bugfix trinity assembly

Author: Tobias Hofmann

recipe/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "1.1.8" %}
+{% set version = "1.1.9" %}
 
 package:
   name: secapr
@@ -7,7 +7,7 @@ package:
 source:
   fn: secapr_{{ version }}.tar.gz
   url: https://github.com/AntonelliLab/seqcap_processor/archive/v{{ version }}.tar.gz
-  sha256: 88cb3ea4ddb5e77175aedba0419855274fc8a624e8c5a856e6e5d107ca9d3cbe
+  sha256: ca80b1d8fa99e572ffe0a7a7c09f77cfa0f2701cb4ffeb21a6b1a4468640b059
 
 build:
   skip: True  # [not py27]

secapr/assemble_reads.py

@@ -180,7 +180,7 @@ def main(args):
         except:
             print('INFO: Stats could NOT be appended to %s. Maybe file does not excist? If contig files were not created, try using the --disable_stats flag and run again' %(os.path.join(input_folder,'sample_stats.txt')))
 
-def assembly_trinity(forw,backw,output_folder,id_sample,cores,min_length):
+def assembly_trinity(forw,backw,output_folder,id_sample,cores,min_length,max_memory):
     print ("De-novo assembly with Trinity of sample %s:" %id_sample)
     print(output_folder)
     command = [