fixed phasing bug

Tobias Hofmann · Tobias Hofmann · commit df6c5e9cdcb6 · 2018-09-27T16:29:13.000+02:00
diff --git a/secapr/phase_alleles.py b/secapr/phase_alleles.py
@@ -46,7 +46,7 @@ def add_arguments(parser):
 		required=True,
 		action=CompletePath,
 		default=None,
-		help='Provide the reference that was used for read-mapping. If you used the alignment-consensus method, provide the joined_references.fasta which is found in the reference folder within the reference-assembly output.'
+		help='Provide the reference that was used for read-mapping. If you used the alignment-consensus method, provide the joined_fasta_library.fasta which is found in the reference_seqs folder within the reference-assembly output.'
 	)
 
 

Original file line number	Diff line number	Diff line change
`@@ -46,7 +46,7 @@ def add_arguments(parser):`
`46`	`46`	`required=True,`
`47`	`47`	`action=CompletePath,`
`48`	`48`	`default=None,`
`49`		`- help='Provide the reference that was used for read-mapping. If you used the alignment-consensus method, provide the joined_references.fasta which is found in the reference folder within the reference-assembly output.'`
	`49`	`+ help='Provide the reference that was used for read-mapping. If you used the alignment-consensus method, provide the joined_fasta_library.fasta which is found in the reference_seqs folder within the reference-assembly output.'`
`50`	`50`	`)`
`51`	`51`
`52`	`52`