Release 2.3.0

[jeanetteclark]

• close any issues assigned to this release
• check and update contributors list and update DESCRIPTION/CITATION if needed
• Update version number, publish date, etc. in DESCRIPTION
• check that all new functions have unit tests
• run spell_check()
• TEST - with token set and internet -- devtools::check()
  • macOS
  • ubuntu
• TEST - as CRAN, with no internet
  • devtools::check(vignettes = FALSE, env_vars = c(NOT_CRAN = "false"))
• TEST - windows via win-builder
  • devtools::check_win_devel()
  • devtools::check_win_release()
  • devtools::check_win_old_release()
• TEST - GuthubActions
  • Ubuntu R-release
  • Ubuntu R-old-release
  • Ubuntu R-devel
  • MacOS R-release
  • Windows R-release
• Check reverse dependencies revdepcheck::revdep_check()
• update NEWS
• update cran_comments
  Once passing:
• run devtools::release()
  After release is posted by CRAN:
• create release tag
• update package revision (in 'develop' branch) to development version i.e. 2.2.2.9000

[mbjones]

Uploaded to CRAN, awaiting review:

Dear Matthew B. Jones
Someone has submitted the package dataone to CRAN.
You are receiving this email to confirm the submission as the maintainer of
this package.
To confirm the submission to CRAN, follow or copy & paste the following
link into your browser:

https://xmpalantir.wu.ac.at/cransubmit/conf_mail.php?code=d67d009f73ca692dc3dd9e7d87599641

If you did not submit the package or do not wish for it to be submitted to
CRAN, simply ignore this email

Submission Information:
Submitter: Matthew B. Jones <[jones@nceas.ucsb.edu](mailto:jones@nceas.ucsb.edu)>
Package: dataone
Version: 2.3.0
Title: R Interface to the DataONE REST API
Author(s): Matthew B. Jones [aut, cre] (ORCID:
  <https://orcid.org/0000-0003-0077-4738>), Peter Slaughter [aut]
  (ORCID: <https://orcid.org/0000-0002-2192-403X>), Rob Nahf
  [aut], Carl Boettiger [aut] (ORCID:
  <https://orcid.org/0000-0002-1642-628X>), Chris Jones [aut]
  (ORCID: <https://orcid.org/0000-0002-8121-2341>), Bryce Mecum
  [aut] (ORCID: <https://orcid.org/0000-0002-0381-3766>),
  Jeanette Clark [aut] (ORCID:
  <https://orcid.org/0000-0003-4703-1974>), Jordan Read [ctb]
  (ORCID: <https://orcid.org/0000-0002-3888-6631>), Lauren Walker
  [aut] (ORCID: <https://orcid.org/0000-0003-2192-431X>), Edmund
  Hart [ctb] (ORCID: <https://orcid.org/0000-0001-7367-7969>),
  Scott Chamberlain [ctb] (ORCID:
  <https://orcid.org/0000-0003-1444-9135>), Regents of the
  University of California [cph]
Maintainer: Matthew B. Jones <[jones@nceas.ucsb.edu](mailto:jones@nceas.ucsb.edu)>
Depends: R (>= 3.1.1)
Suggests: curl, knitr, rmarkdown, testthat, digest, openssl (>= 0.9.3),
  xml2
Description: Provides read and write access to data and metadata from the
  DataONE network <https://www.dataone.org/> of data
  repositories.  Each DataONE repository implements a
  consistent repository application  programming interface.
  Users call methods in R to access these remote  repository
  functions, such as methods to query the metadata catalog, get
   access to metadata for particular data packages, and read
  the data objects  from the data repository. Users can also
  insert and update data objects on  repositories that support
  these methods.
License: Apache License 2.0
Imports: XML (>= 3.95-0.1), httr, methods, stringi, stringr, datapack
  (>= 1.4.0), plyr, parsedate, uuid, base64enc, jsonlite


Submitter's comment: Dear CRAN maintainers,

Please find a new release of
  the R package 'dataone' for your consideration. This
  package was recently archived because I had been
  unable to fix issues with TLS 1.3 support on Windows
  clients. I have temporarily disabled TLS 1.3 support
  and fallback to TLS 1.2 in the underlying 'curl'
  package on windows clients, which has resolved the
  issue. I will continue to investigate a more
  permanent solution for future releases, but it seems
  that Windows clients are not yet fully compatible
  with TLS 1.3 (see

https://windowsforum.com/threads/tls-1-3-iis-express-on-windows-11-mtls-breakage-workarounds-and-outlook.379408/).

##
  Test environments

* Windows (via win-builder):
  x86_64-w64-mingw32 (64-bit) R version 4.5.2
  (2025-10-31 ucrt)
* Windows (via win-builder):
  x86_64-w64-mingw32 (64-bit) R Under development
  (unstable) (2025-12-04 r89100 ucrt)
* macOS Sequoia
  15.7.2: aarch64-apple-darwin20 R version 4.5.2
  (2025-10-31)
* macOS Ventura 13.7.6:
  aarch64-apple-darwin20 R version 4.5.2 (2025-10-31)
*
  Ubuntu 24.04.3 LTS: x86_64-pc-linux-gnu R version
  4.5.2 (2025-10-31)
* Ubuntu 24.04.3 LTS:
  x86_64-pc-linux-gnu R version 4.4.3 (2025-02-28)
*
  Ubuntu 24.04.3 LTS: x86_64-pc-linux-gnu R Under
  development (unstable) (2025-12-02 r89085)

## R CMD
  check results

* There were no NOTEs, ERRORs, or
  WARNINGs except for those related to this being a new
  package submission after archive, and a false
  positive on a spelling check for a proper noun.

[mbjones]

Failed CRAN tests due to Debian Forky using a different TLS library (GnuTLS). I have no way to easily test on Forky, so I just patched it and skipped that test on cran, and hoped for the best. They reviewed, but then kicked it back over spelling the proper noun DataONE (ugh). So, I quoted DataONE and we'll see how that goes. Such a crime that CRAN doesn't use the WORDLIST from the spelling package. CRAN uses aspell, which does have a convoluted way to save a wordlist in an RDS file of all things (see https://ropensci.org/blog/2022/01/21/ropensci-news-digest-january-2022/#to-quote-or-not-to-quote-non-existing-words-in-description). Resubmitted to CRAN on 2025-12-09 (fourth time is the charm).