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Merge remote-tracking branch 'upstream/petab_test' into require_py311
2 parents 787a67e + dd52b99 commit fd0596d

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pypesto/objective/roadrunner/roadrunner_calculator.py

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@@ -205,10 +205,17 @@ def simulate_per_condition(
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parameter_mapping_per_condition,
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preeq=True,
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)
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roadrunner_instance.setSteadyStateSolver("newton")
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# allow simulation to reach steady state
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roadrunner_instance.getSteadyStateSolver().setValue(
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"allow_presimulation", True
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)
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roadrunner_instance.getSteadyStateSolver().setValue(
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"presimulation_maximum_steps", 1000
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)
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roadrunner_instance.getSteadyStateSolver().setValue(
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"presimulation_time", 1000
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)
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# steady state output = observables + state variables
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steady_state_selections = observables_ids + state_variables
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roadrunner_instance.steadyStateSelections = steady_state_selections

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