BUG: Update CI configuration for build targets

Update and fix versions of the actions used and runners.

Replace build-complete with build-meca and other pixi tasks.

The MECA build target now targets the reproducible MECA zip with built
PDFs, JATS XML, source code and data.

Author: thewtex

.github/workflows/build-myst.yml

@@ -1,4 +1,4 @@
-name: Build MyST Document
+name: Build MyST Documents
 
 on:
   push:
@@ -9,29 +9,29 @@ on:
 
 jobs:
   build-myst:
-    runs-on: ubuntu-latest
-    
+    runs-on: ubuntu-24.04
+
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
-      
+      uses: actions/checkout@v5
+
     - name: Setup Pixi
-      uses: prefix-dev/setup-pixi@v0.4.1
+      uses: prefix-dev/setup-pixi@v0.9.0
       with:
         pixi-version: latest
-        
+
     - name: Install dependencies
       run: pixi install
-      
+
     - name: Build HTML
       run: pixi run build-html
-      
+
     - name: Build PDF
       run: pixi run build-pdf
-      
-    - name: Build all formats
-      run: pixi run build-complete
-      
+
+    - name: Build MECA
+      run: pixi run build-meca
+
     - name: Upload build artifacts
       uses: actions/upload-artifact@v4
       with:
@@ -42,26 +42,26 @@ jobs:
         retention-days: 30
 
   build-source:
-    runs-on: ubuntu-latest
-    
+    runs-on: ubuntu-24.04
+
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
-      
+      uses: actions/checkout@v5
+
     - name: Setup Pixi
-      uses: prefix-dev/setup-pixi@v0.4.1
+      uses: prefix-dev/setup-pixi@v0.9.0
       with:
         pixi-version: latest
-        
+
     - name: Install dependencies
       run: pixi install
-      
+
     - name: Build source code
       run: pixi run build-src
-      
+
     - name: Run tests
       run: pixi run test-src
-      
+
     - name: Upload test results
       uses: actions/upload-artifact@v4
       if: always()
@@ -75,26 +75,25 @@ jobs:
     runs-on: ubuntu-latest
     needs: [build-myst, build-source]
     if: github.ref == 'refs/heads/main' || github.ref == 'refs/heads/myst'
-    
+
     steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
-      
+      uses: actions/checkout@v5
+
     - name: Setup Pixi
-      uses: prefix-dev/setup-pixi@v0.4.1
+      uses: prefix-dev/setup-pixi@v0.9.0
       with:
         pixi-version: latest
-        
+
     - name: Install dependencies
       run: pixi install
-      
+
     - name: Build for deployment
-      run: pixi run build-complete
-      
+      run: pixi run build-html
+
     - name: Deploy to GitHub Pages
       uses: peaceiris/actions-gh-pages@v3
       if: github.ref == 'refs/heads/main'
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: ./_build/html
-        cname: insight-journal-template.readthedocs.io

.github/workflows/build-test-latex.yml

@@ -1,22 +1,31 @@
-name: Build LaTeX document
+name: Build LaTeX Document
 
 on: [push,pull_request]
 
 jobs:
-  build_latex:
-    runs-on: ubuntu-latest
+  build-latex:
+    runs-on: ubuntu-24.04
     steps:
       - name: Set up Git repository
-        uses: actions/checkout@v2
+        uses: actions/checkout@v5
+
       - name: Set up LaTeX packages
         run: |
           sudo apt-get update
           sudo apt-get install texlive texlive-publishers texlive-science latexmk
-      - name: Compile LaTeX document
-        run: |
-          cd Document/LaTeX
-          make
-      - name: Check pdf files
-        run: |
-          set -e
-          file Document/LaTeX/ArticleExample.pdf | grep -q ' PDF '
+
+      - name: Setup Pixi
+        uses: prefix-dev/[email protected]
+        with:
+          pixi-version: latest
+
+      - name: Build PDF
+        run: pixi run build-arxiv
+
+      - name: Upload build artifacts
+        uses: actions/upload-artifact@v4
+        with:
+          name: arxiv-pdf-outputs
+          path: |
+            exports/
+          retention-days: 30

README.md

@@ -123,8 +123,8 @@ pixi run -e cxx <task-name>
 | `configure-itk` | Configure ITK build with CMake |
 | `build-itk` | Compile ITK libraries |
 | `configure-project` | Configure project against built ITK |
-| `build-project` | Compile project executables |
-| `test-project` | Run project test suite |
+| `build-src` | Compile project executables |
+| `test-src` | Run project test suite |
 
 ### Example Workflows
 
@@ -145,10 +145,10 @@ pixi run build
 **Work with C++ code:**
 ```bash
 # Build ITK and project code
-pixi run -e cxx build-project
+pixi run -e cxx build-src
 
 # Run tests
-pixi run -e cxx test-project
+pixi run -e cxx test-src
 ```
 
 **Create journal submission:**

pixi.toml

@@ -62,7 +62,7 @@ dev = { depends-on = ["serve"] }
 clean = "myst clean"
 
 # Aggregate, standard build task
-build = { depends-on = ["build-manuscript", "test-project"] }
+build = { depends-on = ["build-manuscript", "test-src"] }
 
 [feature.cxx.dependencies]
 cmake = "*"
@@ -98,15 +98,15 @@ depends-on = ["build-itk"]
 outputs = ["build/project-build/CMakeFiles/**"]
 description = "Configure the project"
 
-[feature.cxx.tasks.build-project]
+[feature.cxx.tasks.build-src]
 cmd = "cmake --build build/project-build"
 depends-on = ["configure-project"]
 outputs = ["build/project-build/**"]
 description = "Build the project"
 
-[feature.cxx.tasks.test-project]
+[feature.cxx.tasks.test-src]
 cmd = "cd build/project-build && ctest"
-depends-on = ["build-project"]
+depends-on = ["build-src"]
 description = "Test the project"
 
 [environments]