runs action-updater on ci.yml

 - changed indentation

 - updates versions of: seutp-python, alls-green, codecov-action

 - change get-notebooks step to deal with deprecation of `set-output`
   command: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Author: billbrod

.github/workflows/ci.yml

@@ -2,13 +2,13 @@ name: build
 on:
   workflow_dispatch:
   schedule:
-    - cron: "0 0 * * 0" # weekly
+  - cron: 0 0 * * 0     # weekly
   pull_request:
     branches:
-      - main
+    - main
   push:
     branches:
-      - main
+    - main
 
 jobs:
   # based on https://slashgear.github.io/how-to-split-test-by-folder-with-github-action/
@@ -17,10 +17,11 @@ jobs:
     outputs:
       notebook: ${{ steps.get-notebooks.outputs.nb }}
     steps:
-      - uses: actions/checkout@v3
-      - id: get-notebooks
+    - uses: actions/checkout@v3
+    - id: get-notebooks
         # it's weird to me, but the quotes around \n should *not* be escaped or it breaks
-        run: echo "::set-output name=nb::$(ls TUTORIALS/*ipynb | jq -R -s -c 'split("\n")[:-1]')"
+      run: "echo \"nb=$(ls TUTORIALS/*ipynb | jq -R -s -c 'split(\"\\n\")[:-1]')\"\
+        \ >> $GITHUB_OUTPUT\n"
   notebooks:
     runs-on: ubuntu-latest
     needs: [get_notebooks]
@@ -31,22 +32,22 @@ jobs:
       fail-fast: false
     name: Execute notebooks
     steps:
-      - uses: actions/checkout@v3
-      - uses: actions/setup-python@v2
-        with:
-          python-version: ${{ matrix.python-version }}
-          cache: pip
-          cache-dependency-path: setup.py
-      - name: Setup FFmpeg
-        uses: FedericoCarboni/setup-ffmpeg@v2
-      - name: Install dependencies
+    - uses: actions/checkout@v3
+    - uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+        cache: pip
+        cache-dependency-path: setup.py
+    - name: Setup FFmpeg
+      uses: FedericoCarboni/setup-ffmpeg@102916131ac71e9c7ad6fa9d98fed2c9d86722e6 # v1.1.0
+    - name: Install dependencies
         # nbclient 0.5.5 is the first version that includes jupyter execute
-        run: |
-          pip install --upgrade --upgrade-strategy eager .
-          pip install jupyter ipywidgets
-          pip install "nbclient>=0.5.5"
-      - name: Run notebooks
-        run: "jupyter execute ${{ matrix.notebook }}.ipynb --kernel_name=python3"
+      run: |
+        pip install --upgrade --upgrade-strategy eager .
+        pip install jupyter ipywidgets
+        pip install "nbclient>=0.5.5"
+    - name: Run notebooks
+      run: jupyter execute ${{ matrix.notebook }}.ipynb --kernel_name=python3
   tests:
     runs-on: ubuntu-latest
     strategy:
@@ -55,30 +56,30 @@ jobs:
       fail-fast: false
     name: Run tests
     steps:
-      - uses: actions/checkout@v3
-      - name: Install Python 3
-        uses: actions/setup-python@v2
-        with:
-          python-version: ${{ matrix.python-version }}
-          cache: pip
-          cache-dependency-path: setup.py
-      - name: Install dependencies
-        run: |
-          # using the --upgrade and --upgrade-strategy eager flags ensures that
-          # pip will always install the latest allowed version of all
-          # dependencies, to make sure the cache doesn't go stale
-          pip install --upgrade --upgrade-strategy eager .
-          pip install coverage
-      - name: Run tests
-        run: |
-          # for some reason, need to run this in the TESTS dir in order to get
-          # coverage to work (I couldn't get an analogous .coveragerc working in
-          # the root directory)
-          cd TESTS && coverage run unitTests.py
-          # generate the xml file and move it to root dir for codecov
-          coverage xml -o ../coverage.xml
-      - name: Upload coverage to Codecov
-        uses: codecov/codecov-action@v3
+    - uses: actions/checkout@v3
+    - name: Install Python 3
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+        cache: pip
+        cache-dependency-path: setup.py
+    - name: Install dependencies
+      run: |
+        # using the --upgrade and --upgrade-strategy eager flags ensures that
+        # pip will always install the latest allowed version of all
+        # dependencies, to make sure the cache doesn't go stale
+        pip install --upgrade --upgrade-strategy eager .
+        pip install coverage
+    - name: Run tests
+      run: |
+        # for some reason, need to run this in the TESTS dir in order to get
+        # coverage to work (I couldn't get an analogous .coveragerc working in
+        # the root directory)
+        cd TESTS && coverage run unitTests.py
+        # generate the xml file and move it to root dir for codecov
+        coverage xml -o ../coverage.xml
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@858dd794fbb81941b6d60b0dca860878cba60fa9 # v3.1.1
   all_tutorials_in_docs:
     runs-on: ubuntu-latest
     name: Check that all tutorial notebooks are included in docs
@@ -87,30 +88,31 @@ jobs:
       matrix:
         notebook: ${{fromJson(needs.get_notebooks.outputs.notebook)}}
     steps:
-      - uses: actions/checkout@v3
-      - name: Check for file
-        shell: bash
-        run: if [[ -z "$(grep ${{ matrix.notebook }} docs/tutorials/*nblink)" ]] ; then exit 1; fi
+    - uses: actions/checkout@v3
+    - name: Check for file
+      shell: bash
+      run: if [[ -z "$(grep ${{ matrix.notebook }} docs/tutorials/*nblink)" ]] ; then
+        exit 1; fi
   no_extra_nblinks:
     runs-on: ubuntu-latest
     name: Check that we don't have any extra nblink files
     steps:
-      - uses: actions/checkout@v3
-      - name: Check same number of nblink and notebooks
-        shell: bash
-        run: |
-          n_nblink=0; for file in docs/tutorials/*nblink; do let "n_nblink+=1"; done;
-          n_ipynb=0; for file in TUTORIALS/*ipynb; do let "n_ipynb+=1"; done;
-          if [[ $n_nblink != $n_ipynb ]]; then exit 1; fi;
+    - uses: actions/checkout@v3
+    - name: Check same number of nblink and notebooks
+      shell: bash
+      run: |
+        n_nblink=0; for file in docs/tutorials/*nblink; do let "n_nblink+=1"; done;
+        n_ipynb=0; for file in TUTORIALS/*ipynb; do let "n_ipynb+=1"; done;
+        if [[ $n_nblink != $n_ipynb ]]; then exit 1; fi;
 
   check:
     if: always()
     needs:
-      - notebooks
-      - tests
+    - notebooks
+    - tests
     runs-on: ubuntu-latest
     steps:
-      - name: Decide whether all tests and notebooks succeeded
-        uses: re-actors/alls-green@release/v1
-        with:
-          jobs: ${{ toJSON(needs) }}
+    - name: Decide whether all tests and notebooks succeeded
+      uses: re-actors/alls-green@afee1c1eac2a506084c274e9c02c8e0687b48d9e # v1.2.2
+      with:
+        jobs: ${{ toJSON(needs) }}