feat!: separate file access from entity endpoints and add RO-Crate metadata endpoint #6
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BREAKING CHANGE: File access endpoints have been restructured
Replace /entity/{id}/file/{fileId} with /file/{id} for direct file
access. Add /entity/{id}/crate endpoint to retrieve raw RO-Crate
JSON-LD metadata. Add /files endpoint for listing files with filtering
and pagination.
This improves API clarity by distinguishing between RO-Crate entities
(Collections, Objects, MediaObjects) and the underlying file system.