From 701e3513fbd54afbfc87d9cabe168939917967f6 Mon Sep 17 00:00:00 2001 From: llbbl Date: Fri, 27 Jun 2025 18:36:28 -0500 Subject: [PATCH] feat: Set up Python testing infrastructure with Poetry and pytest - Initialize Poetry package manager with pyproject.toml configuration - Add pytest, pytest-cov, and pytest-mock as dev dependencies - Configure pytest with custom markers (unit, integration, slow) - Set up coverage reporting with HTML and XML output - Create test directory structure with shared fixtures in conftest.py - Add validation tests to verify the testing setup works correctly - Update .gitignore with testing and development artifacts - Configure test commands accessible via `poetry run test` or `poetry run tests` --- .gitignore | 53 ++ poetry.lock | 1453 ++++++++++++++++++++++++++++++++ pyproject.toml | 84 ++ tests/__init__.py | 0 tests/conftest.py | 156 ++++ tests/integration/__init__.py | 0 tests/test_setup_validation.py | 120 +++ tests/unit/__init__.py | 0 8 files changed, 1866 insertions(+) create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 tests/__init__.py create mode 100644 tests/conftest.py create mode 100644 tests/integration/__init__.py create mode 100644 tests/test_setup_validation.py create mode 100644 tests/unit/__init__.py diff --git a/.gitignore b/.gitignore index fe5883f4..e00148b3 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,55 @@ *.pyc *.bin + +# Testing related +.pytest_cache/ +.coverage +htmlcov/ +coverage.xml +*.cover +*.py,cover +.hypothesis/ +pytest_cache/ + +# Claude settings +.claude/* + +# Virtual environments +venv/ +.venv/ +env/ +.env/ +ENV/ +env.bak/ +venv.bak/ + +# Poetry +# Note: poetry.lock should be committed to ensure reproducible builds + +# Build artifacts +build/ +dist/ +*.egg-info/ +.eggs/ +__pycache__/ +*.pyo +*.pyd + +# IDE files +.idea/ +.vscode/ +*.swp +*.swo +*~ +.DS_Store + +# Jupyter Notebook +.ipynb_checkpoints + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre 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@@ -0,0 +1,84 @@ +[tool.poetry] +name = "pointer-summarizer" +version = "0.1.0" +description = "PyTorch implementation of Get To The Point: Summarization with Pointer-Generator Networks" +authors = ["Your Name "] +readme = "README.md" +license = "MIT" +packages = [ + { include = "data_util" }, + { include = "training_ptr_gen" } +] + +[tool.poetry.dependencies] +python = "^3.8" +torch = ">=1.0.0" +numpy = "*" +# pyrouge = "*" # Note: pyrouge needs to be installed separately following its instructions + +[tool.poetry.group.dev.dependencies] +pytest = "^7.4.0" +pytest-cov = "^4.1.0" +pytest-mock = "^3.11.0" + +[tool.poetry.scripts] +test = "pytest:main" +tests = "pytest:main" + +[tool.pytest.ini_options] +minversion = "7.0" +testpaths = ["tests"] +python_files = ["test_*.py", "*_test.py"] +python_classes = ["Test*"] +python_functions = ["test_*"] +addopts = [ + "-ra", + "--strict-markers", + "--cov=data_util", + "--cov=training_ptr_gen", + "--cov-report=html", + "--cov-report=xml", + "--cov-report=term-missing", + "--cov-fail-under=0", # Set to 0 for initial setup, increase when adding real tests + "-v", + "--tb=short" +] +markers = [ + "unit: marks tests as unit tests (fast)", + "integration: marks tests as integration tests (slower)", + "slow: marks tests as slow running" +] + +[tool.coverage.run] +source = ["data_util", "training_ptr_gen"] +omit = [ + "*/tests/*", + "*/__init__.py", + "*/setup.py", + "*/venv/*", + "*/.venv/*", + "data_util/data.py" # Python 2 syntax file, needs migration +] + +[tool.coverage.report] +precision = 2 +show_missing = true +skip_covered = false +exclude_lines = [ + "pragma: no cover", + "def __repr__", + "raise AssertionError", + "raise NotImplementedError", + "if __name__ == .__main__.:", + "if TYPE_CHECKING:" +] + +[tool.coverage.html] +directory = "htmlcov" + +[tool.coverage.xml] +output = "coverage.xml" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" \ No newline at end of file diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 00000000..bfa3e33e --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,156 @@ +"""Shared pytest fixtures and configuration for all tests.""" + +import os +import shutil +import tempfile +from pathlib import Path +from typing import Generator, Dict, Any + +import pytest +import torch + + +@pytest.fixture +def temp_dir() -> Generator[Path, None, None]: + """Create a temporary directory for test files.""" + temp_path = tempfile.mkdtemp() + yield Path(temp_path) + shutil.rmtree(temp_path, ignore_errors=True) + + +@pytest.fixture +def mock_config() -> Dict[str, Any]: + """Provide a mock configuration dictionary for testing.""" + return { + "hidden_dim": 256, + "emb_dim": 128, + "batch_size": 8, + "max_enc_steps": 400, + "max_dec_steps": 100, + "beam_size": 4, + "min_dec_steps": 35, + "vocab_size": 50000, + "lr": 0.15, + "adagrad_init_acc": 0.1, + "rand_unif_init_mag": 0.02, + "trunc_norm_init_std": 1e-4, + "max_grad_norm": 2.0, + "pointer_gen": True, + "is_coverage": True, + "cov_loss_wt": 1.0, + "eps": 1e-12, + } + + +@pytest.fixture +def sample_vocab() -> Dict[str, Any]: + """Create a sample vocabulary for testing.""" + vocab_dict = { + "[PAD]": 0, + "[UNK]": 1, + "[START]": 2, + "[STOP]": 3, + "the": 4, + "a": 5, + "is": 6, + "was": 7, + "are": 8, + "were": 9, + } + + class MockVocab: + def __init__(self, vocab_dict): + self._word_to_id = vocab_dict + self._id_to_word = {v: k for k, v in vocab_dict.items()} + + def word2id(self, word): + return self._word_to_id.get(word, 1) # Return UNK id for unknown words + + def id2word(self, idx): + return self._id_to_word.get(idx, "[UNK]") + + def size(self): + return len(self._word_to_id) + + return MockVocab(vocab_dict) + + +@pytest.fixture +def sample_batch_data() -> Dict[str, Any]: + """Create sample batch data for model testing.""" + batch_size = 4 + max_enc_steps = 50 + max_dec_steps = 20 + + return { + "enc_batch": torch.randint(0, 100, (batch_size, max_enc_steps)), + "enc_padding_mask": torch.ones(batch_size, max_enc_steps), + "enc_lens": torch.tensor([45, 48, 50, 42]), + "enc_batch_extend_vocab": torch.randint(0, 150, (batch_size, max_enc_steps)), + "extra_zeros": torch.zeros((batch_size, 50)), + "c_t_1": torch.zeros((batch_size, 2 * 256)), # 2 * hidden_dim for bidirectional + "coverage": torch.zeros(batch_size, max_enc_steps), + "dec_batch": torch.randint(0, 100, (batch_size, max_dec_steps)), + "target_batch": torch.randint(0, 100, (batch_size, max_dec_steps)), + "dec_padding_mask": torch.ones(batch_size, max_dec_steps), + "max_art_oovs": 10, + } + + +@pytest.fixture +def device(): + """Return the appropriate device for testing.""" + return torch.device("cuda" if torch.cuda.is_available() else "cpu") + + +@pytest.fixture(autouse=True) +def reset_random_seeds(): + """Reset random seeds before each test for reproducibility.""" + import random + import numpy as np + + random.seed(42) + np.random.seed(42) + torch.manual_seed(42) + if torch.cuda.is_available(): + torch.cuda.manual_seed_all(42) + + +@pytest.fixture +def mock_data_path(temp_dir: Path) -> Path: + """Create mock data directory structure.""" + data_path = temp_dir / "data" + data_path.mkdir() + + # Create subdirectories + (data_path / "finished_files").mkdir() + (data_path / "chunked").mkdir() + + # Create a mock vocab file + vocab_path = data_path / "finished_files" / "vocab" + vocab_words = ["[PAD]", "[UNK]", "[START]", "[STOP]", "the", "a", "is", "was"] + vocab_path.write_text("\n".join(vocab_words)) + + return data_path + + +@pytest.fixture +def mock_model_path(temp_dir: Path) -> Path: + """Create mock model directory.""" + model_path = temp_dir / "models" + model_path.mkdir() + return model_path + + +@pytest.fixture +def mock_log_path(temp_dir: Path) -> Path: + """Create mock log directory.""" + log_path = temp_dir / "logs" + log_path.mkdir() + return log_path + + +@pytest.mark.timeout(60) +class TimeoutMarker: + """Marker for tests with custom timeout.""" + pass \ No newline at end of file diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/tests/test_setup_validation.py b/tests/test_setup_validation.py new file mode 100644 index 00000000..e8205cb9 --- /dev/null +++ b/tests/test_setup_validation.py @@ -0,0 +1,120 @@ +"""Validation tests to ensure the testing infrastructure is properly set up.""" + +import pytest +from pathlib import Path +import sys +import os + + +class TestSetupValidation: + """Test class to validate the testing infrastructure setup.""" + + @pytest.mark.unit + def test_pytest_installed(self): + """Test that pytest is properly installed.""" + assert pytest.__version__ + + @pytest.mark.unit + def test_project_structure_exists(self): + """Test that the project modules can be imported.""" + # Add project root to path + project_root = Path(__file__).parent.parent + if str(project_root) not in sys.path: + sys.path.insert(0, str(project_root)) + + # Test imports + import data_util + import training_ptr_gen + + assert data_util.__name__ == "data_util" + assert training_ptr_gen.__name__ == "training_ptr_gen" + + @pytest.mark.unit + def test_fixtures_available(self, temp_dir, mock_config, sample_vocab): + """Test that pytest fixtures are working correctly.""" + # Test temp_dir fixture + assert isinstance(temp_dir, Path) + assert temp_dir.exists() + + # Test mock_config fixture + assert isinstance(mock_config, dict) + assert "hidden_dim" in mock_config + assert mock_config["hidden_dim"] == 256 + + # Test sample_vocab fixture + assert hasattr(sample_vocab, "word2id") + assert hasattr(sample_vocab, "id2word") + assert sample_vocab.word2id("the") == 4 + assert sample_vocab.id2word(4) == "the" + + @pytest.mark.unit + def test_torch_available(self): + """Test that PyTorch is available for testing.""" + import torch + assert torch.__version__ + + # Create a simple tensor to verify torch is working + tensor = torch.tensor([1, 2, 3]) + assert tensor.shape == (3,) + + @pytest.mark.unit + def test_markers_defined(self, request): + """Test that custom pytest markers are properly defined.""" + # This test itself uses the unit marker + marker = request.node.get_closest_marker("unit") + assert marker is not None + + @pytest.mark.integration + def test_coverage_configured(self): + """Test that coverage is properly configured.""" + # This test will be included in coverage report + # Coverage configuration is tested by running the test suite + assert True + + @pytest.mark.unit + def test_test_directory_structure(self): + """Test that test directory structure is correct.""" + test_root = Path(__file__).parent + + assert test_root.name == "tests" + assert (test_root / "__init__.py").exists() + assert (test_root / "conftest.py").exists() + assert (test_root / "unit" / "__init__.py").exists() + assert (test_root / "integration" / "__init__.py").exists() + + @pytest.mark.slow + @pytest.mark.unit + def test_slow_marker(self): + """Test that slow marker works (this is not actually slow).""" + import time + # Simulate a test that would be slow + start = time.time() + # Do nothing - this is just to test the marker + elapsed = time.time() - start + assert elapsed < 1.0 # Should be fast + + @pytest.mark.unit + def test_sample_batch_fixture(self, sample_batch_data, device): + """Test the sample batch data fixture.""" + assert "enc_batch" in sample_batch_data + assert "dec_batch" in sample_batch_data + assert "target_batch" in sample_batch_data + + # Test tensor shapes + assert sample_batch_data["enc_batch"].shape[0] == 4 # batch size + assert sample_batch_data["dec_batch"].shape[0] == 4 + + # Test device fixture + assert device.type in ["cpu", "cuda"] + + @pytest.mark.unit + def test_mock_paths(self, mock_data_path, mock_model_path, mock_log_path): + """Test mock path fixtures.""" + assert mock_data_path.exists() + assert mock_model_path.exists() + assert mock_log_path.exists() + + # Test data path structure + assert (mock_data_path / "finished_files").exists() + assert (mock_data_path / "chunked").exists() + assert (mock_data_path / "finished_files" / "vocab").exists() \ No newline at end of file diff --git a/tests/unit/__init__.py b/tests/unit/__init__.py new file mode 100644 index 00000000..e69de29b