Merge pull request #83 from mhuguesaws/bugfix/#82_netcdf_version

Bugfix/#82 netcdf version

Author: mhuguesaws

apps/wrf/README.md

@@ -169,10 +169,10 @@ tar -xzf wrf_simulation_CONUS12km.tar.gz
 cd /fsx/conus_12km
 
 cp /opt/wrf-omp/src/run/{\
-        CAMtr_volume_mixing_ratio,\
         GENPARM.TBL,\
         HLC.TBL,\
         LANDUSE.TBL,\
+        MPTABLE.TBL,\
         RRTM_DATA,\
         RRTM_DATA_DBL,\
         RRTMG_LW_DATA,\
@@ -209,7 +209,7 @@ export I_MPI_OFI_LIBRARY_INTERNAL=0
 export I_MPI_OFI_PROVIDER=efa
 
 module purge
-module load wrf-omp/4.4.1-intel-2022.2.0
+module load wrf-omp/4.2.2-intel-2022.2.0
 
 mpirun wrf.exe
 EOF

apps/wrf/amis/amzn2-pc-wrf/variables.json

@@ -2,7 +2,7 @@
   "aws_region": "us-east-1",
   "parallel_cluster_version": "3.2.0",
   "application_name": "wrf",
-  "application_version": "4.4.1",
+  "application_version": "4.2.2",
   "intel_serial_number": "",
   "instance_type": "m5zn.3xlarge",
   "encrypt_boot": "false",

apps/wrf/docs/packer_ami_variables.md

@@ -10,7 +10,7 @@ Here is a description of the variables and their default value:
 | Name                       | Description                                      | Type    | Default          | Required |
 | -------------------------- | ------------------------------------------------ | ------- | ---------------- | -------- |
 | application\_name          | Application name                                 | String  | wrf              | no       |
-| application\_version       | WRF version                                      | String  | 4.4.1            | no       |
+| application\_version       | WRF version                                      | String  | 4.2.2            | no       |
 | aws\_region                | AWS Region where packer will create the instance | String  | us-east-1        | no       |
 | company\_name              | Company Name used as AMI name prefix             | String  | None             | yes      |
 | encrypt\_boot              | Encrypt snaphot and AMI                          | Boolean | False            | no       |

apps/wrf/scripts/setup/create_parallelcluster_config.sh

@@ -109,7 +109,7 @@ PCLUSTER_VERSION=`pcluster version | yq '.version'`
 # Retrieve WRF Image ID
 export WRF_AMI=`aws ec2 describe-images --owners self \
     --query 'Images[*].{ImageId:ImageId,CreationDate:CreationDate}' \
-    --filters "Name=name,Values=*-${OS_TYPE}-parallelcluster-${PCLUSTER_VERSION}-wrf-4.4.1-*" \
+    --filters "Name=name,Values=*-${OS_TYPE}-parallelcluster-${PCLUSTER_VERSION}-wrf-4.2.2-*" \
     --region ${AWS_REGION} \
     | jq -r 'sort_by(.CreationDate)[-1] | .ImageId'`
 

scripts/install/hdf5_install.sh

@@ -18,7 +18,7 @@
 set -e
 
 MODULES_PATH="/usr/share/Modules/modulefiles"
-HDF5_VERSION="1.12.1"
+HDF5_VERSION="1.10.6"
 
 HDF5_URL="https://github.com/HDFGroup/hdf5.git"
 

scripts/install/mpas_install.sh

@@ -53,7 +53,7 @@ done
 
 MODULES_PATH="/usr/share/Modules/modulefiles"
 
-DEPENDS_ON="hdf5-parallel/1.12.1 pnetcdf/1.12.3 netcdf-c/4.9.0 netcdf-fortran/4.6.0 pio/2.5.8"
+DEPENDS_ON="hdf5-parallel/1.10.6 pnetcdf/1.12.2 netcdf-c/4.7.4 netcdf-fortran/4.5.3 pio/2.5.4"
 
 MPAS_URL="https://github.com/MPAS-Dev/MPAS-Model.git"
 

scripts/install/netcdf_c_install.sh

@@ -19,8 +19,8 @@ set -e
 
 MODULES_PATH="/usr/share/Modules/modulefiles"
 
-NETCDF_C_VERSION="4.9.0"
-DEPENDS_ON="hdf5-parallel/1.12.1 pnetcdf/1.12.3"
+NETCDF_C_VERSION="4.7.4"
+DEPENDS_ON="hdf5-parallel/1.10.6 pnetcdf/1.12.2"
 
 NETCDF_C_ARCHIVE="netcdf-c-${NETCDF_C_VERSION}.tar.gz"
 NETCDF_C_URL="https://codeload.github.com/Unidata/netcdf-c/tar.gz/refs/tags/v${NETCDF_C_VERSION}"

scripts/install/netcdf_fortran_install.sh

@@ -19,8 +19,8 @@ set -e
 
 MODULES_PATH="/usr/share/Modules/modulefiles"
 
-NETCDF_FORTRAN_VERSION="4.6.0"
-DEPENDS_ON="hdf5-parallel/1.12.1 netcdf-c/4.9.0"
+NETCDF_FORTRAN_VERSION="4.5.3"
+DEPENDS_ON="hdf5-parallel/1.10.6 netcdf-c/4.7.4"
 
 NETCDF_FORTRAN_ARCHIVE="netcdf-fortran-${NETCDF_FORTRAN_VERSION}.tar.gz"
 NETCDF_FORTRAN_URL="https://codeload.github.com/Unidata/netcdf-fortran/tar.gz/refs/tags/v${NETCDF_FORTRAN_VERSION}"

scripts/install/pio_install.sh

@@ -22,7 +22,7 @@ MODULES_PATH="/usr/share/Modules/modulefiles"
 PACKAGE_NAME="pio"
 
 PACKAGE_VERSION="2.5.4"
-DEPENDS_ON="hdf5-parallel/1.12.1 pnetcdf/1.12.3 netcdf-c/4.9.0 netcdf-fortran/4.6.0"
+DEPENDS_ON="hdf5-parallel/1.10.6 pnetcdf/1.12.2 netcdf-c/4.7.4 netcdf-fortran/4.5.3"
 
 PACKAGE_ARCHIVE="${PACKAGE_NAME}${PACKAGE_VERSION//./_}/${PACKAGE_NAME}-${PACKAGE_VERSION}.tar.gz"
 PACKAGE_TAR=$(echo $PACKAGE_ARCHIVE | cut -d'/' -f2)

scripts/install/pnetcdf_install.sh

@@ -19,7 +19,7 @@ set -e
 
 MODULES_PATH="/usr/share/Modules/modulefiles"
 
-PNETCDF_VERSION="1.12.3"
+PNETCDF_VERSION="1.12.2"
 
 PNETCDF_ARCHIVE="pnetcdf-${PNETCDF_VERSION}.tar.gz"
 PNETCDF_URL="https://parallel-netcdf.github.io/Release/${PNETCDF_ARCHIVE}"