sty: ruff check --fix && ruff format [ignore-rev]

Author: effigies

src/bids_validator/__main__.py

@@ -9,7 +9,7 @@
 
 import sys
 from collections.abc import Iterator
-from typing import Annotated, Optional
+from typing import Annotated
 
 from bidsschematools.schema import load_schema
 from bidsschematools.types import Namespace
@@ -100,7 +100,7 @@ def version_callback(value: bool):
 @app.command()
 def main(
     bids_path: str,
-    schema_path: Optional[str] = None,
+    schema_path: str | None = None,
     verbose: Annotated[bool, typer.Option('--verbose', '-v', help='Show verbose output')] = False,
     version: Annotated[
         bool,

src/bids_validator/bidsignore.py

@@ -3,15 +3,15 @@
 import os
 import re
 from functools import lru_cache
-from typing import Protocol, Union
+from typing import Protocol
 
 import attrs
 
 from .types.files import FileTree
 
 
 @lru_cache
-def compile_pat(pattern: str) -> Union[re.Pattern, None]:
+def compile_pat(pattern: str) -> re.Pattern | None:
     """Compile .gitignore-style ignore lines to regular expressions."""
     orig = pattern
     # A line starting with # serves as a comment.

src/bids_validator/context.py

@@ -67,7 +67,7 @@ def load_tsv(file: FileTree, *, max_rows=0) -> Namespace:
             fobj = itertools.islice(fobj, max_rows)
         contents = (line.rstrip('\r\n').split('\t') for line in fobj)
         # Extract headers then transpose rows to columns
-        return Namespace(zip(next(contents), zip(*contents)))
+        return Namespace(zip(next(contents), zip(*contents, strict=False), strict=False))
 
 
 @cache
@@ -78,7 +78,7 @@ def load_tsv_gz(file: FileTree, headers: tuple[str], *, max_rows=0) -> Namespace
         if max_rows > 0:
             gzobj = itertools.islice(gzobj, max_rows)
         contents = (line.decode().rstrip('\r\n').split('\t') for line in gzobj)
-        return Namespace(zip(headers, zip(*contents)))
+        return Namespace(zip(headers, zip(*contents, strict=False), strict=False))
 
 
 @cache

tests/test_context.py

@@ -163,24 +163,28 @@ def test_sessions(synthetic_dataset):
 
 
 def test_load_tsv(synthetic_dataset):
-
     tsv_file_tree = synthetic_dataset / 'participants.tsv'
     tsv_file = context.load_tsv(tsv_file_tree)
 
     data_set = {
-        "participant_id": ("sub-01", "sub-02", "sub-03", "sub-04", "sub-05"),
-        "age": (34, 38, 22, 21, 42),
-        "sex": ("F", "M", "M", "F", "M")
+        'participant_id': ('sub-01', 'sub-02', 'sub-03', 'sub-04', 'sub-05'),
+        'age': (34, 38, 22, 21, 42),
+        'sex': ('F', 'M', 'M', 'F', 'M'),
     }
 
     assert tsv_file.keys() == data_set.keys()
-    assert [tsv_file[key] == data_set[key] for key in tsv_file.keys()]  
+    assert [tsv_file[key] == data_set[key] for key in tsv_file.keys()]
 
 
 def test_load_tsv_gz(synthetic_dataset):
-
-    headers = ("respiratory", "cardiac")
-    tsvgz_file_tree = synthetic_dataset / "sub-01" / "ses-01" / "func" /"sub-01_ses-01_task-nback_run-01_stim.tsv.gz"
+    headers = ('respiratory', 'cardiac')
+    tsvgz_file_tree = (
+        synthetic_dataset
+        / 'sub-01'
+        / 'ses-01'
+        / 'func'
+        / 'sub-01_ses-01_task-nback_run-01_stim.tsv.gz'
+    )
 
     tsvgz_file = context.load_tsv_gz(tsvgz_file_tree, headers)