fixing integration tests

Author: sagehen03

cypress/e2e/hermes/hermes-upload.cy.js

@@ -9,20 +9,25 @@ describe('Hermes Upload', {retries: 0}, () => {
     cy.wait('@loginRequest');
     cy.visit('/hermes/new', { timeout: 10000 });
     cy.get('#dataSetName').type('Cypress dataset');
-    cy.get('#genomeBuild').type('GRCh38').type('{enter}');
-    cy.get('#cohort').type('My Hermes Cohort');
-    cy.get('#acknowledgements').type('My Hermes Acknowledgements');
-    cy.get("#cases").type("1000{enter}");
+    // cy.get('#genomeBuild').type('GRCh38').type('{enter}');
+    cy.get('[data-cy="cohort"]').type('UKBio').type('{enter}');
+    cy.get('#contactPerson').type('Point of Contact');
+    cy.get('#dataCollectionStart').type('2006/01/01');
+    cy.get('[data-cy="sex"]').type('Male').type('{enter}');
+    cy.get('#dataCollectionEnd').type('2006/01/31');
     cy.get('[data-cy="ancestry"]').type('European').type('{enter}');
     cy.get('[data-cy="case-ascertainment"]').eq(0).type('Electronic').type('{enter}');
-    cy.get('[data-cy="case-type"]').type('Prevalent').type('{enter}');
     cy.get("#phenotype").type('T2D');
-    cy.get("#participants").type('20');
-    cy.get("#sexProportion").type('20');
-    cy.get("#age").type('20');
-    cy.get("#analysisSoftware").type('Big Analysis Software');
-    cy.get("#statisticalModel").type('Complex Model');
-    cy.get("#covariates").type('Here are some covariates');
+    cy.get("#caseDefinition").type("My case definition");
+    cy.get("#totalSampleSize").type("989");
+    cy.get("#maleProportionCohort").type("1");
+
+    // cy.get("#participants").type('20');
+    // cy.get("#sexProportion").type('20');
+    // cy.get("#age").type('20');
+    // cy.get("#analysisSoftware").type('Big Analysis Software');
+    // cy.get("#statisticalModel").type('Complex Model');
+    // cy.get("#covariates").type('Here are some covariates');
     cy.get('input[type="file"]').attachFile('sample-gwas.csv');
     cy.get('[data-cy="column-dropdown"]').eq(1).type('chromosome').type('{enter}');
     cy.get('[data-cy="column-dropdown"]').eq(2).type('position').type('{enter}');

pages/hermes/new.vue

@@ -429,7 +429,7 @@ async function uploadSubmit(){
                     <div v-tooltip="'e.g. “UKBiobank”'">
                     <Dropdown placeholder="Select Cohort" v-model="cohort" :options="cohortOptions" id="cohort" optionLabel="name"
                               optionValue="value" :class="{ 'p-invalid': errors.cohort }"
-                              aria-describedby="cohort-help"
+                              aria-describedby="cohort-help" data-cy="cohort"
 
                     />
                     </div>
@@ -545,6 +545,7 @@ async function uploadSubmit(){
                               optionLabel="name" optionValue="value"
                               placeholder="Select Sex Stratification"
                               aria-describedby="sex-help"
+                              data-cy="sex"
                               :class="{'p-invalid': errors.sex}"
                     />
                     <small id="sex-help" class="p-error">