Skip to content

Commit e4e7e2a

Browse files
committed
performance enhancements for PCA diagnostic plots and Heatmaps
1 parent 643db86 commit e4e7e2a

21 files changed

+5418
-5401
lines changed

.test/report.html

Lines changed: 8 additions & 7 deletions
Large diffs are not rendered by default.

.test/results/configs/unsupervised_analysis/digits_config.yaml

Lines changed: 22 additions & 27 deletions
Original file line numberDiff line numberDiff line change
@@ -4,37 +4,32 @@ features_to_plot:
44
- pixel_0_1
55
- pixel_0_2
66
- pixel_0_3
7-
heatmap: !!python/object/apply:collections.OrderedDict
8-
- - - metrics
9-
- - spearman
10-
- - hclust_methods
11-
- - complete
12-
- average
7+
heatmap:
8+
hclust_methods:
9+
- complete
10+
- average
11+
metrics:
12+
- spearman
1313
mem: '32000'
1414
mem_small: '16000'
1515
metadata_of_interest: target
1616
partition: shortq
1717
project_name: digits
1818
result_path: .test/results/
19-
scatterplot2d: !!python/object/apply:collections.OrderedDict
20-
- - - size
21-
- 2
22-
- - alpha
23-
- 1
19+
scatterplot2d:
20+
alpha: 1
21+
size: 1
2422
threads: 2
25-
umap: !!python/object/apply:collections.OrderedDict
26-
- - - metrics
27-
- - euclidean
28-
- - n_neighbors
29-
- - 100
30-
- - min_dist
31-
- - 0.1
32-
- - n_components
33-
- - 2
34-
- 3
35-
- - densmap
36-
- 1
37-
- - connectivity
38-
- 1
39-
- - diagnostics
40-
- 1
23+
umap:
24+
connectivity: 1
25+
densmap: 1
26+
diagnostics: 1
27+
metrics:
28+
- euclidean
29+
min_dist:
30+
- 0.1
31+
n_components:
32+
- 2
33+
- 3
34+
n_neighbors:
35+
- 100

0 commit comments

Comments
 (0)