Skip to content

Add an interface for just getting the matching k-mer coordinates between two sequences #15

@fedarko

Description

@fedarko

Not placing them in a matrix -- just returning the match coordinates (given strings s1 and s2 and a value of k) in an easy-to-parse format. Would be useful for @IshaanSD's work.

I'm not sure about what output format would be best -- should we return separate lists of forward, reverse-complementary, and palindromic matches? (Where each "match" is just a tuple of (s1 coord, s2 coord).) Maybe the most elegant option is making some sort of MatchResults class that stores all of these lists of matches.

Metadata

Metadata

Assignees

No one assigned

    Labels

    enhancementNew feature or request

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions