Basic documentation for YOLO integration in TrackMate.

Author: tinevez

_pages/plugins/trackmate/detectors/trackmate-yolo.md

@@ -7,7 +7,9 @@ categories: [Segmentation,Tracking,Machine Learning]
 artifact: sc.fiji:TrackMate-YOLO
 ---
 
-{% include img src="/media/plugins/trackmate/detectors/cellpose/trackmate-cellpose-sam-R2_multiC.gif" width='400'  %} {% include img src="/media/plugins/trackmate/detectors/cellpose/trackmate-cellpose-sam-01.png"  width='200' %}
+{% include img src="/media/plugins/trackmate/detectors/YOLO/trackmate-yolo-detector-03.png" width='400'  %}{% include img src="/media/plugins/trackmate/detectors/YOLO/trackmate-yolo-detector-02.png" width='300'  %}
+
+{% include img src="/media/plugins/trackmate/detectors/YOLO/trackmate-yolo-detector-01.gif" width='600'  align='center' %}
 
 This page describes a detector module for [TrackMate](/plugins/trackmate/index) that relies on [YOLO](https://github.com/ultralytics/ultralytics), an AI-based detection algorithm, popular for natural images. 
 It is not included in the core of TrackMate and must be installed via its own [update site](/update-sites/following). 
@@ -27,5 +29,26 @@ We need to subscribe to an extra update site in Fiji, and have a working install
 In Fiji, go to {% include bc path='Help|Update...' %}. Update and restart Fiji until it is up-to-date. Then go to the update menu once more, and click on the `Manage update sites` button, at the bottom-left of the updater window. A new window containing all the known update sites will appear. Click on the  **TrackMate-YOLO** check box and restart Fiji one more time. 
 
 
+### YOLO
+
+This step requires you to have a working conda installation, like for any of the Python tools integrated in TrackMate. 
+We recommend [miniforge](https://github.com/conda-forge/miniforge).
+
+For YOLO specifically, we copy below the installation instruction from the [YOLO GitHub repo](https://github.com/ultralytics/ultralytics#-documentation)
+
+```zsh
+conda create --name yolo python=3.10
+conda activate yolo
+pip install ultralytics
+```
+
+Once this is done, still in the same terminal, test that YOLO was properly installed with e.g.:
+
+```zsh
+❯ yolo version
+8.3.168
+```
+
+### TrackMate conda configuration
 
-### Cellpose-SAM
+If you have not done it yet, you need to [configure the TrackMate conda path in Fiji](/plugins/trackmate/trackmate-conda-path).