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_pages/plugins/foci-analyzer.md

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@@ -231,7 +231,7 @@ The following output tables are displayed after analysis of each image/frame. Th
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2. When `Also detect foci in Channel B and perform colocalization` is checked: a `.zip` file ending with `foci_coloc_map.zip`, containing the [colocalization maps](https://imagej.net/plugins/foci-analyzer#colocalization-maps). Here, analysis settings are also stored in the metadata (`Image` -> `Show Info... in Fiji).
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3. A `.tsv` file ending with `Foci_results.tsv` with statistics _per cell/nucleus_, with the following columns: _cell area/volume, background intensity, mean intensity, sum intensity, foci count, mean foci intensity, median foci intensity, mean foci volume, median foci volume, total foci volume, total foci intensity_ for the foci channel(s), as well as _background intensity, mean intensity, sum intensity_ for the nucleus channel. When colocalization is performed, the table also contains: _overlapping foci count, overlapping foci volume, overlap count % ch_A, overlap volume ch_A, count % ch_B, overlap count % ch_B, overlap volume ch_B_.
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3. A `.tsv` file ending with `Foci_results.tsv` with statistics _per cell/nucleus_, with the following columns: _cell area/volume, background intensity_ (outside the nuclei)_, mean intensity, sum intensity, threshold (filtered image), foci count, mean foci intensity, median foci intensity, mean foci volume, median foci volume, total foci volume, total foci intensity_ for the foci channel(s), as well as _background intensity, mean intensity, sum intensity_ for the nucleus channel. When colocalization is performed, the table also contains: _overlapping foci count, overlapping foci volume, overlap count % ch_A, overlap volume ch_A, count % ch_B, overlap count % ch_B, overlap volume ch_B_.
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4. A `.tsv` file ending with `All_Foci_statistics.tsv` containing relationship info and intensity info for every individual focus: _label, Cell ID, Mean, StdDev, Max, Min, Median, Skewness, Area/Volume, Circularity/Sphericity, Centroid.X, Centroid.Y, (Centroid.Z)_. (Centroids coordinates with respect to the image origin.)
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