@@ -9,9 +9,47 @@ categories: [Image processing and vistualization]
99source-url : https://github.com/chenli-git/FijiGui
1010---
1111
12- ## Overview
13- please check github link for relevant info
14- https://github.com/chenli-git/FijiGui
12+ ## Welcome to EasyFiji
13+ please check [ Github link] ( https://github.com/chenli-git/FijiGui ) for relevant info
1514
15+ ** EasyFiji** is a graphical user interface for fluorescence image display and processing in Fiji.
16+ <p align =" center " >
17+ <img src="https://github.com/chenli-git/FijiGui/blob/main/media/Gui_layout.png" width="600">
18+ </p >
19+
20+ ## Download options:
21+ * Download via Github:
22+ 1 . [ Click here to download ⬇️] ( https://github.com/chenli-git/FijiGui/raw/main/target/EasyFiji_2-1.2.0.jar )
23+ 2 . After downloading, copy the ` .jar ` file into your ** Fiji.app/plugins/** folder.
24+ 3 . Restart Fiji.
25+ ---
26+ * Download via the ImageJ Update Site:
27+ 1 . Launch Fiji and navigate to Help > Update.. in the menu bar.
28+ 2 . In the updater window, click Manage Update sites and Search for "EasyFiji" and click "Apply and Close".
29+ 3 . Restart Fiji.
30+
31+ ## Quick start
32+ * [ Tutorial video] ( https://www.youtube.com/watch?v=MzzeFybe4ZY )
33+ * Procotol paper (To be continued).
34+
35+ ## Dependencies
36+ EasyFiji is fully compatiable with native Fiji.
37+ EasyFiji is compatible with ImageJ but requires Bioformats and Kymograph builder plugins to be installed separately for some functions.
38+
39+ ## Sample images
40+
41+ Example images used in the paper [ Source image repo] ( https://github.com/chenli-git/EasyFiji_figures ) :
42+
43+ * [ Fluorescence two-channel displays] ( https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig2_INPUT.tif )
44+ * [ Fluorescence grayscale(DIC) display] ( https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig4_DIC_INPUT.tif )
45+ * [ Fluorescence grayscale(EM) display] ( https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig4_EM_INPUT.tif )
46+ * [ Colocalization display] ( https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig3_INPUT.tif )
47+ * [ Axial bleach correction] ( https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig5_ORG_INPUT.tif )
48+ * [ Temporal bleach correction] ( https://github.com/chenli-git/EasyFiji_figures/raw/main/Fig5_TCELLS_INPUT.tif )
49+
50+ ## Additional Help
51+ * For 'how to' questions please post to our Image.sc thread.
52+ * For issues or feature requests, please open an issue on [ GitHub repository] ( https://github.com/chenli-git/FijiGui/issues ) .
53+
1654## Reference
1755
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