GTDB doesn't recognize fasta assembly type input

I added two fasta files with contigs in my KBASE narrative and assigned them to FASTA assembly type, but GTDB does not recognize my input. Am I doing something wrong?

[kmmarcello]

This is 7 mo later, but I am also having this issue. Did you ever get it resolved?

[crockettz]

Hi @kmmarcello,
This new version only takes "set-like" inputs - GenomeSets, AssemblySets, or BinnedContigs. That tradeoff is a design choice to streamline job submissions of 1 set rather than a bunch of individual jobs, but it comes at the expense of cases like yours where there is only 1 or 2. You'll need to create a set which contains those assemblies using the Build AssemblySet app, and then input that AssemblySet into GTDB.

[kmmarcello]

thank you @crockettz, this worked!

[silviacretoiu]

Hello, I'm looking for a solution to use the app. I have an assembly set containing 24 SPAdes assemblies and I'm keep getting this error:

Traceback (most recent call last):
File "/kb/module/bin/../lib/kb_gtdbtk/kb_gtdbtkServer.py", line 101, in _call_method
result = method(ctx, *params)
File "/kb/module/lib/kb_gtdbtk/kb_gtdbtkImpl.py", line 174, in run_kb_gtdbtk_classify_wf
(classification, summary_tables) = run_gtdbtk (runner,
File "/kb/module/lib/kb_gtdbtk/core/gtdbtk_runner.py", line 131, in run_gtdbtk
return _process_output_files(temp_output, temp_trees_output, output_dir, id_to_name)
File "/kb/module/lib/kb_gtdbtk/core/gtdbtk_runner.py", line 268, in _process_output_files
if row[field_i] == 'N/A':
IndexError: list index out of range