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Simulations are currently tied to GRCh37/hg19, which is methodologically fine for now. But it would be nice to have options for GRCh38/hg38 soon.
An easy fix would be to include a gene list using these positions, independent loci, and hapmap sites. Then two versions of a sample_script could point to either set of data while recommending the use of the newer GRCh38 high-coverage, recalled genotypes for 1000G.
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enhancementNew feature or requestNew feature or request