diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml
index a910d420..4cfa7432 100644
--- a/.github/workflows/qc.yml
+++ b/.github/workflows/qc.yml
@@ -60,4 +60,5 @@ jobs:
         run: |
           poetry add "pandas<2.0.0"
           poetry add "numpy<1.24"
-          poetry run tox -e py
\ No newline at end of file
+          poetry add "scipy<1.16.3"
+          poetry run tox -e py
diff --git a/poetry.lock b/poetry.lock
index 3e346a94..40ad7e74 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2,14 +2,27 @@
 
 [[package]]
 name = "alabaster"
-version = "0.7.16"
+version = "1.0.0"
 description = "A light, configurable Sphinx theme"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
+groups = ["main"]
+files = [
+    {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"},
+    {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"},
+]
+
+[[package]]
+name = "annotated-doc"
+version = "0.0.3"
+description = "Document parameters, class attributes, return types, and variables inline, with Annotated."
+optional = true
+python-versions = ">=3.8"
 groups = ["main"]
+markers = "extra == \"rdflib-endpoint\""
 files = [
-    {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"},
-    {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"},
+    {file = "annotated_doc-0.0.3-py3-none-any.whl", hash = "sha256:348ec6664a76f1fd3be81f43dffbee4c7e8ce931ba71ec67cc7f4ade7fbbb580"},
+    {file = "annotated_doc-0.0.3.tar.gz", hash = "sha256:e18370014c70187422c33e945053ff4c286f453a984eba84d0dbfa0c935adeda"},
 ]
 
 [[package]]
@@ -37,15 +50,15 @@ files = [
 
 [[package]]
 name = "anyio"
-version = "4.10.0"
+version = "4.11.0"
 description = "High-level concurrency and networking framework on top of asyncio or Trio"
 optional = true
 python-versions = ">=3.9"
 groups = ["main"]
 markers = "extra == \"rdflib-endpoint\""
 files = [
-    {file = "anyio-4.10.0-py3-none-any.whl", hash = "sha256:60e474ac86736bbfd6f210f7a61218939c318f43f9972497381f1c5e930ed3d1"},
-    {file = "anyio-4.10.0.tar.gz", hash = "sha256:3f3fae35c96039744587aa5b8371e7e8e603c0702999535961dd336026973ba6"},
+    {file = "anyio-4.11.0-py3-none-any.whl", hash = "sha256:0287e96f4d26d4149305414d4e3bc32f0dcd0862365a4bddea19d7a1ec38c4fc"},
+    {file = "anyio-4.11.0.tar.gz", hash = "sha256:82a8d0b81e318cc5ce71a5f1f8b5c4e63619620b63141ef8c995fa0db95a57c4"},
 ]
 
 [package.dependencies]
@@ -55,48 +68,40 @@ sniffio = ">=1.1"
 typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""}
 
 [package.extras]
-trio = ["trio (>=0.26.1)"]
+trio = ["trio (>=0.31.0)"]
 
 [[package]]
 name = "arrow"
-version = "1.3.0"
+version = "1.4.0"
 description = "Better dates & times for Python"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
 files = [
-    {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
-    {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
+    {file = "arrow-1.4.0-py3-none-any.whl", hash = "sha256:749f0769958ebdc79c173ff0b0670d59051a535fa26e8eba02953dc19eb43205"},
+    {file = "arrow-1.4.0.tar.gz", hash = "sha256:ed0cc050e98001b8779e84d461b0098c4ac597e88704a655582b21d116e526d7"},
 ]
 
 [package.dependencies]
 python-dateutil = ">=2.7.0"
-types-python-dateutil = ">=2.8.10"
+tzdata = {version = "*", markers = "python_version >= \"3.9\""}
 
 [package.extras]
 doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
-test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2025.2)", "simplejson (==3.*)"]
 
 [[package]]
 name = "attrs"
-version = "25.3.0"
+version = "25.4.0"
 description = "Classes Without Boilerplate"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 groups = ["main"]
 files = [
-    {file = "attrs-25.3.0-py3-none-any.whl", hash = "sha256:427318ce031701fea540783410126f03899a97ffc6f61596ad581ac2e40e3bc3"},
-    {file = "attrs-25.3.0.tar.gz", hash = "sha256:75d7cefc7fb576747b2c81b4442d4d4a1ce0900973527c011d1030fd3bf4af1b"},
+    {file = "attrs-25.4.0-py3-none-any.whl", hash = "sha256:adcf7e2a1fb3b36ac48d97835bb6d8ade15b8dcce26aba8bf1d14847b57a3373"},
+    {file = "attrs-25.4.0.tar.gz", hash = "sha256:16d5969b87f0859ef33a48b35d55ac1be6e42ae49d5e853b597db70c35c57e11"},
 ]
 
-[package.extras]
-benchmark = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
-cov = ["cloudpickle ; platform_python_implementation == \"CPython\"", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
-dev = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
-docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"]
-tests = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
-tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\""]
-
 [[package]]
 name = "babel"
 version = "2.17.0"
@@ -114,26 +119,26 @@ dev = ["backports.zoneinfo ; python_version < \"3.9\"", "freezegun (>=1.0,<2.0)"
 
 [[package]]
 name = "cachetools"
-version = "5.5.2"
+version = "6.2.1"
 description = "Extensible memoizing collections and decorators"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
 groups = ["dev"]
 files = [
-    {file = "cachetools-5.5.2-py3-none-any.whl", hash = "sha256:d26a22bcc62eb95c3beabd9f1ee5e820d3d2704fe2967cbe350e20c8ffcd3f0a"},
-    {file = "cachetools-5.5.2.tar.gz", hash = "sha256:1a661caa9175d26759571b2e19580f9d6393969e5dfca11fdb1f947a23e640d4"},
+    {file = "cachetools-6.2.1-py3-none-any.whl", hash = "sha256:09868944b6dde876dfd44e1d47e18484541eaf12f26f29b7af91b26cc892d701"},
+    {file = "cachetools-6.2.1.tar.gz", hash = "sha256:3f391e4bd8f8bf0931169baf7456cc822705f4e2a31f840d218f445b9a854201"},
 ]
 
 [[package]]
 name = "certifi"
-version = "2025.4.26"
+version = "2025.10.5"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 groups = ["main"]
 files = [
-    {file = "certifi-2025.4.26-py3-none-any.whl", hash = "sha256:30350364dfe371162649852c63336a15c70c6510c2ad5015b21c2345311805f3"},
-    {file = "certifi-2025.4.26.tar.gz", hash = "sha256:0a816057ea3cdefcef70270d2c515e4506bbc954f417fa5ade2021213bb8f0c6"},
+    {file = "certifi-2025.10.5-py3-none-any.whl", hash = "sha256:0f212c2744a9bb6de0c56639a6f68afe01ecd92d91f14ae897c4fe7bbeeef0de"},
+    {file = "certifi-2025.10.5.tar.gz", hash = "sha256:47c09d31ccf2acf0be3f701ea53595ee7e0b8fa08801c6624be771df09ae7b43"},
 ]
 
 [[package]]
@@ -164,104 +169,125 @@ files = [
 
 [[package]]
 name = "charset-normalizer"
-version = "3.4.2"
+version = "3.4.4"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7"
 groups = ["main"]
 files = [
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-    {file = "charset_normalizer-3.4.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:b2d318c11350e10662026ad0eb71bb51c7812fc8590825304ae0bdd4ac283acd"},
-    {file = "charset_normalizer-3.4.2-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:9cbfacf36cb0ec2897ce0ebc5d08ca44213af24265bd56eca54bee7923c48fd6"},
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 ]
 
 [[package]]
@@ -294,14 +320,14 @@ markers = {main = "platform_system == \"Windows\" or sys_platform == \"win32\""}
 
 [[package]]
 name = "curies"
-version = "0.12.1"
+version = "0.12.3"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)"
 optional = false
 python-versions = ">=3.10"
 groups = ["main"]
 files = [
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+    {file = "curies-0.12.3.tar.gz", hash = "sha256:b55e266c3f92f0ad8ce13727c3d4e81d622b2422f5df230a6ff2f9e98733f2a2"},
 ]
 
 [package.dependencies]
@@ -353,14 +379,14 @@ packaging = "*"
 
 [[package]]
 name = "distlib"
-version = "0.3.9"
+version = "0.4.0"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
 groups = ["dev"]
 files = [
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+    {file = "distlib-0.4.0.tar.gz", hash = "sha256:feec40075be03a04501a973d81f633735b4b69f98b05450592310c0f401a4e0d"},
 ]
 
 [[package]]
@@ -408,44 +434,40 @@ test = ["pytest (>=6)"]
 
 [[package]]
 name = "fastapi"
-version = "0.116.2"
+version = "0.120.1"
 description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production"
 optional = true
 python-versions = ">=3.8"
 groups = ["main"]
 markers = "extra == \"rdflib-endpoint\""
 files = [
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+    {file = "fastapi-0.120.1.tar.gz", hash = "sha256:b5c6217e9ddca6dfcf54c97986180d4a1955e10c693d74943fc5327700178bff"},
 ]
 
 [package.dependencies]
+annotated-doc = ">=0.0.2"
 pydantic = ">=1.7.4,<1.8 || >1.8,<1.8.1 || >1.8.1,<2.0.0 || >2.0.0,<2.0.1 || >2.0.1,<2.1.0 || >2.1.0,<3.0.0"
-starlette = ">=0.40.0,<0.49.0"
+starlette = ">=0.40.0,<0.50.0"
 typing-extensions = ">=4.8.0"
 
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+    {file = "greenlet-3.2.4.tar.gz", hash = "sha256:0dca0d95ff849f9a364385f36ab49f50065d76964944638be9691e1832e9f86d"},
 ]
 
 [package.extras]
 docs = ["Sphinx", "furo"]
-test = ["objgraph", "psutil"]
+test = ["objgraph", "psutil", "setuptools"]
 
 [[package]]
 name = "h11"
@@ -621,14 +642,14 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "idna"
-version = "3.10"
+version = "3.11"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 groups = ["main"]
 files = [
-    {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
-    {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
+    {file = "idna-3.11-py3-none-any.whl", hash = "sha256:771a87f49d9defaf64091e6e6fe9c18d4833f140bd19464795bc32d966ca37ea"},
+    {file = "idna-3.11.tar.gz", hash = "sha256:795dafcc9c04ed0c1fb032c2aa73654d8e8c5023a7df64a53f39190ada629902"},
 ]
 
 [package.extras]
@@ -648,14 +669,14 @@ files = [
 
 [[package]]
 name = "iniconfig"
-version = "2.1.0"
+version = "2.3.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["main", "dev"]
 files = [
-    {file = "iniconfig-2.1.0-py3-none-any.whl", hash = "sha256:9deba5723312380e77435581c6bf4935c94cbfab9b1ed33ef8d238ea168eb760"},
-    {file = "iniconfig-2.1.0.tar.gz", hash = "sha256:3abbd2e30b36733fee78f9c7f7308f2d0050e88f0087fd25c2645f63c773e1c7"},
+    {file = "iniconfig-2.3.0-py3-none-any.whl", hash = "sha256:f631c04d2c48c52b84d0d0549c99ff3859c98df65b3101406327ecc7d53fbf12"},
+    {file = "iniconfig-2.3.0.tar.gz", hash = "sha256:c76315c77db068650d49c5b56314774a7804df16fee4402c1f19d6d15d8c4730"},
 ]
 
 [[package]]
@@ -705,34 +726,34 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "jinjanator"
-version = "25.2.0"
+version = "25.3.0"
 description = "Command-line interface to Jinja2 for templating in shell scripts."
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 groups = ["main"]
 files = [
-    {file = "jinjanator-25.2.0-py3-none-any.whl", hash = "sha256:b74f86b6daa447c2154b63386c7fcfcd4eb012b24d7c018b2e1c4ec7b8351930"},
-    {file = "jinjanator-25.2.0.tar.gz", hash = "sha256:d3df38c267f9274ad5460a4f29b88b460de40a9155dfc9b28633c38ac42df766"},
+    {file = "jinjanator-25.3.0-py3-none-any.whl", hash = "sha256:f0ed0ab25775521254e1f4faf8c510e75efd0f437425c3d3b8ce0f6724c00f9c"},
+    {file = "jinjanator-25.3.0.tar.gz", hash = "sha256:ca0d9f290c8d89c32d11bf27ce06d0329388ce96e6ed5f35810f532d7d219473"},
 ]
 
 [package.dependencies]
 attrs = "*"
 jinja2 = ">=2.7.2"
-jinjanator-plugins = "==24.2.*"
+jinjanator-plugins = "==25.1.*"
 python-dotenv = ">=1"
 pyyaml = "*"
 typing-extensions = "*"
 
 [[package]]
 name = "jinjanator-plugins"
-version = "24.2.0"
+version = "25.1.0"
 description = "Package which provides the plugin API for the jinjanator tool"
 optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.10"
 groups = ["main"]
 files = [
-    {file = "jinjanator_plugins-24.2.0-py3-none-any.whl", hash = "sha256:a0adfe5df0e8bd1a025602bc1867505b243eac5783464f8ce2b8600ac41e73ba"},
-    {file = "jinjanator_plugins-24.2.0.tar.gz", hash = "sha256:5fa8eecb6d9fbef5e7947b3820da4bd7b2ef3f102721e42382de5e71e52b409a"},
+    {file = "jinjanator_plugins-25.1.0-py3-none-any.whl", hash = "sha256:7c4361fd2450e4b0928a47e252ea384ca6c93ac389f7dde07875d0709e22b849"},
+    {file = "jinjanator_plugins-25.1.0.tar.gz", hash = "sha256:46fdc53dc375bd6f460b2095f3073579a7a7a115487418156e9611ca5c8a96a8"},
 ]
 
 [package.dependencies]
@@ -797,14 +818,14 @@ files = [
 
 [[package]]
 name = "jsonschema"
-version = "4.23.0"
+version = "4.25.1"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 groups = ["main"]
 files = [
-    {file = "jsonschema-4.23.0-py3-none-any.whl", hash = "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"},
-    {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"},
+    {file = "jsonschema-4.25.1-py3-none-any.whl", hash = "sha256:3fba0169e345c7175110351d456342c364814cfcf3b964ba4587f22915230a63"},
+    {file = "jsonschema-4.25.1.tar.gz", hash = "sha256:e4a9655ce0da0c0b67a085847e00a3a51449e1157f4f75e9fb5aa545e122eb85"},
 ]
 
 [package.dependencies]
@@ -823,18 +844,18 @@ webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format\"
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=24.6.0)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "rfc3987-syntax (>=1.1.0)", "uri-template", "webcolors (>=24.6.0)"]
 
 [[package]]
 name = "jsonschema-specifications"
-version = "2025.4.1"
+version = "2025.9.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
 files = [
-    {file = "jsonschema_specifications-2025.4.1-py3-none-any.whl", hash = "sha256:4653bffbd6584f7de83a67e0d620ef16900b390ddc7939d56684d6c81e33f1af"},
-    {file = "jsonschema_specifications-2025.4.1.tar.gz", hash = "sha256:630159c9f4dbea161a6a2205c3011cc4f18ff381b189fff48bb39b9bf26ae608"},
+    {file = "jsonschema_specifications-2025.9.1-py3-none-any.whl", hash = "sha256:98802fee3a11ee76ecaca44429fda8a41bff98b00a0f2838151b113f210cc6fe"},
+    {file = "jsonschema_specifications-2025.9.1.tar.gz", hash = "sha256:b540987f239e745613c7a9176f3edb72b832a4ac465cf02712288397832b5e8d"},
 ]
 
 [package.dependencies]
@@ -842,26 +863,26 @@ referencing = ">=0.31.0"
 
 [[package]]
 name = "linkml"
-version = "1.9.2"
+version = "1.9.5"
 description = "Linked Open Data Modeling Language"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
 files = [
-    {file = "linkml-1.9.2-py3-none-any.whl", hash = "sha256:4c9cf217948367df8a20cdf68e8f6da24ba23ab97a551f8ae32e9d4264e702cc"},
-    {file = "linkml-1.9.2.tar.gz", hash = "sha256:2f9141d2bc8a93bfe1d4b86a015ad0acbb94c2af099177f5687a50d3331d2b34"},
+    {file = "linkml-1.9.5-py3-none-any.whl", hash = "sha256:7544c8221a083029ee37ec12eeaa3978237c8181f08d6f2abf9789561375a58f"},
+    {file = "linkml-1.9.5.tar.gz", hash = "sha256:736765dfdf35054497452771f8fd5653f7a2b6aec735b4e9e8171730ddf93582"},
 ]
 
 [package.dependencies]
 antlr4-python3-runtime = ">=4.9.0,<4.10"
-click = ">=7.0"
+click = ">=8.0,<8.2"
 graphviz = ">=0.10.1"
 hbreader = "*"
 isodate = ">=0.6.0"
 jinja2 = ">=3.1.0"
 jsonasobj2 = ">=1.0.3,<2.0.0"
 jsonschema = {version = ">=4.0.0", extras = ["format"]}
-linkml-runtime = ">=1.9.2,<2.0.0"
+linkml-runtime = ">=1.9.5,<2.0.0"
 openpyxl = "*"
 parse = "*"
 prefixcommons = ">=0.1.7"
@@ -879,24 +900,16 @@ sqlalchemy = ">=1.4.31"
 typing-extensions = {version = ">=4.6.0", markers = "python_version < \"3.12\""}
 watchdog = ">=0.9.0"
 
-[package.extras]
-black = ["black (>=24.0.0)"]
-numpydantic = ["numpydantic (>=1.6.1)"]
-pandera = ["pandera (>=0.19.0)"]
-polars-lts-cpu = ["polars-lts-cpu (>=1.0.0)"]
-shacl = ["pyshacl (>=0.25.0)"]
-tests = ["black (>=24.0.0)", "numpydantic (>=1.6.1)", "pyshacl (>=0.25.0)"]
-
 [[package]]
 name = "linkml-runtime"
-version = "1.9.2"
+version = "1.9.5"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
 files = [
-    {file = "linkml_runtime-1.9.2-py3-none-any.whl", hash = "sha256:ff9fd51d38e5c6b991b88e90fb603120629b9da28861f334ea48139c7266f941"},
-    {file = "linkml_runtime-1.9.2.tar.gz", hash = "sha256:d37b3ca479464ec1fec04551f98e8e0e74620ee62a45bbd80da1ff2022132d92"},
+    {file = "linkml_runtime-1.9.5-py3-none-any.whl", hash = "sha256:fece3e8aa25a4246165c6528b6a7fe83a929b985d2ce1951cc8a0f4da1a30b90"},
+    {file = "linkml_runtime-1.9.5.tar.gz", hash = "sha256:78dc1383adf11ad5f20bb11b6adde56ed566fbd2429a292d57699ad4596c738a"},
 ]
 
 [package.dependencies]
@@ -943,90 +956,118 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
 [[package]]
 name = "markupsafe"
-version = "3.0.2"
+version = "3.0.3"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.9"
 groups = ["main"]
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 [package.extras]
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+version = "2.19.2"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
-groups = ["main"]
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 [package.extras]
@@ -1527,14 +1718,14 @@ jsonasobj = ">=1.2.1"
 
 [[package]]
 name = "pyparsing"
-version = "3.2.3"
-description = "pyparsing module - Classes and methods to define and execute parsing grammars"
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+description = "pyparsing - Classes and methods to define and execute parsing grammars"
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 python-versions = ">=3.9"
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 [package.extras]
@@ -1542,23 +1733,23 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
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 ]
 
 [package.dependencies]
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-tomli = {version = ">=2.2.1", markers = "python_version < \"3.11\""}
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 [package.extras]
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 [[package]]
 name = "pyshex"
@@ -1605,26 +1796,27 @@ shexjsg = ">=0.8.1"
 
 [[package]]
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-iniconfig = "*"
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 [package.extras]
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+dev = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "pytest-logging"
@@ -1657,14 +1849,14 @@ six = ">=1.5"
 
 [[package]]
 name = "python-dotenv"
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 [package.extras]
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 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
 optional = false
-python-versions = "<4.0.0,>=3.8.1"
+python-versions = ">=3.8.1"
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 [package.dependencies]
@@ -1823,14 +2035,14 @@ rdflib-jsonld = "0.6.1"
 
 [[package]]
 name = "referencing"
-version = "0.36.2"
+version = "0.37.0"
 description = "JSON Referencing + Python"
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 ]
 
 [package.dependencies]
@@ -1840,19 +2052,19 @@ typing-extensions = {version = ">=4.4.0", markers = "python_version < \"3.13\""}
 
 [[package]]
 name = "requests"
-version = "2.32.3"
+version = "2.32.5"
 description = "Python HTTP for Humans."
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+python-versions = ">=3.9"
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-charset-normalizer = ">=2,<4"
+charset_normalizer = ">=2,<4"
 idna = ">=2.5,<4"
 urllib3 = ">=1.21.1,<3"
 
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 ]
 
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+description = "Manipulate well-formed Roman numerals"
+optional = false
+python-versions = ">=3.9"
+groups = ["main"]
+markers = "python_version >= \"3.11\""
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+lint = ["mypy (==1.15.0)", "pyright (==1.1.394)", "ruff (==0.9.7)"]
+test = ["pytest (>=8)"]
+
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 [[package]]
 name = "shexjsg"
@@ -2147,18 +2478,19 @@ pandas = ["pandas (>=1.3.5)"]
 
 [[package]]
 name = "sphinx"
-version = "7.4.7"
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 description = "Python documentation generator"
 optional = false
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 groups = ["main"]
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 colorama = {version = ">=0.4.6", markers = "sys_platform == \"win32\""}
 docutils = ">=0.20,<0.22"
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 [package.extras]
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+
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+python-versions = ">=3.11"
+groups = ["main"]
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+version = "6.1.0"
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-python-versions = ">=3.8"
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 ]
 
 [package.dependencies]
@@ -2219,6 +2607,10 @@ click = ">=8.0"
 docutils = "*"
 sphinx = ">=4.0"
 
+[package.extras]
+docs = ["reno"]
+test = ["pytest", "pytest-cov"]
+
 [[package]]
 name = "sphinx-rtd-theme"
 version = "3.0.2"
@@ -2358,73 +2750,73 @@ test = ["pytest"]
 
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 optional = false
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-
-[package.extras]
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-
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+virtualenv = ">=20.34"
 
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 name = "typing-extensions"
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-description = "Backported and Experimental Type Hints for Python 3.8+"
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 [[package]]
 name = "typing-inspection"
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 description = "Runtime typing introspection tools"
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 python-versions = ">=3.9"
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 [package.dependencies]
@@ -2631,14 +3018,14 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake
 
 [[package]]
 name = "urllib3"
-version = "2.4.0"
+version = "2.5.0"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
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 python-versions = ">=3.9"
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 ]
 
 [package.extras]
@@ -2649,15 +3036,15 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "uvicorn"
-version = "0.35.0"
+version = "0.38.0"
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 python-versions = ">=3.9"
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 [package.dependencies]
@@ -2685,20 +3072,21 @@ crypto-eth-addresses = ["eth-hash[pycryptodome] (>=0.7.0)"]
 
 [[package]]
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 [package.dependencies]
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 filelock = ">=3.12.2,<4"
 platformdirs = ">=3.9.1,<5"
+typing-extensions = {version = ">=4.13.2", markers = "python_version < \"3.11\""}
 
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@@ -2761,91 +3149,93 @@ files = [
 
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+    {file = "wrapt-1.17.3.tar.gz", hash = "sha256:f66eb08feaa410fe4eebd17f2a2c8e2e46d3476e9f8c783daa8e09e0faa666d0"},
 ]
 
 [extras]
@@ -2858,4 +3248,4 @@ scipy = ["scipy"]
 [metadata]
 lock-version = "2.1"
 python-versions = ">=3.10,<4.0.0"
-content-hash = "89512dc2b80b1d5fb3dbbf3b5b472527a84d4f2f939d815233207795937cd634"
+content-hash = "f2233f569211985c04212206cd953e17ac018398e75371c199cf3d56d5838a77"
diff --git a/pyproject.toml b/pyproject.toml
index 79f6d68a..afce3fd3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,7 +18,7 @@ dependencies = [
     "linkml-runtime>=1.7.5",
     "linkml>1.7.10",
     "pandas>1.0.3",
-    "sssom-schema==1.1.0a2",
+    "sssom-schema==1.1.0a3",
     "sparqlwrapper>=2.0.0",
     "validators>=0.20.0",
     "deprecation>=2.1.0",
diff --git a/src/sssom/constants.py b/src/sssom/constants.py
index 41d52452..bf505a9e 100644
--- a/src/sssom/constants.py
+++ b/src/sssom/constants.py
@@ -82,6 +82,7 @@
 PREDICATE_MODIFIER_NOT = "Not"
 PREDICATE_LABEL = "predicate_label"
 PREDICATE_TYPE = "predicate_type"
+PUBLICATION_DATE = "publication_date"
 OBJECT_ID = "object_id"
 OBJECT_LABEL = "object_label"
 OBJECT_CATEGORY = "object_category"
@@ -120,6 +121,7 @@
 MATCH_STRING = "match_string"
 SUBJECT_PREPROCESSING = "subject_preprocessing"
 OBJECT_PREPROCESSING = "object_preprocessing"
+RECORD_ID = "record_id"
 SEMANTIC_SIMILARITY_SCORE = "semantic_similarity_score"
 SEMANTIC_SIMILARITY_MEASURE = "semantic_similarity_measure"
 SEE_ALSO = "see_also"
@@ -136,6 +138,8 @@
 # see <https://mapping-commons.github.io/sssom/spec-model/#representing-unmapped-entities>
 NO_TERM_FOUND = "sssom:NoTermFound"
 
+ENTITY_TYPE_RDFS_LITERAL = "rdfs literal"
+
 # PREDICATES
 OWL_EQUIVALENT_CLASS = "owl:equivalentClass"
 OWL_EQUIVALENT_PROPERTY = "owl:equivalentProperty"
diff --git a/src/sssom/parsers.py b/src/sssom/parsers.py
index ea4399bc..86382f66 100644
--- a/src/sssom/parsers.py
+++ b/src/sssom/parsers.py
@@ -39,7 +39,6 @@
     get_filter_df_by_prefixes_index,
 )
 from linkml_runtime.loaders.json_loader import JSONLoader
-from linkml_runtime.loaders.rdflib_loader import RDFLibLoader
 from pandas.errors import EmptyDataError
 from rdflib import Graph
 from sssom_schema import EntityTypeEnum, Mapping, MappingSet
@@ -80,6 +79,7 @@
 )
 
 from .context import ConverterHint, _get_built_in_prefix_map, ensure_converter
+from .rdf_internal import MappingSetRDFConverter
 from .sssom_document import MappingSetDocument
 from .util import (
     SSSOM_DEFAULT_RDF_SERIALISATION,
@@ -617,24 +617,15 @@ def from_sssom_rdf(
     :returns: MappingSetDataFrame object
     """
     converter = ensure_converter(prefix_map)
-    mapping_set = cast(
-        MappingSet,
-        RDFLibLoader().load(
-            source=g,
-            target_class=MappingSet,
-            schemaview=_get_sssom_schema_object().view,
-            prefix_map=converter.bimap,
-            ignore_unmapped_predicates=True,
-        ),
-    )
 
     # The priority order for combining metadata is:
     #  1. Metadata appearing in the SSSOM document
     #  2. Metadata passed through ``meta`` to this function
     #  3. Default metadata
 
-    # As the Metadata appearing in the SSSOM document is already parsed by LinkML
-    # we only need to overwrite the metadata from 2 and 3 if it is not present
+    # We prepare a default dictionary with (2) and (3), which will be
+    # automatically combined with the metadata extracted from the RDF
+    # graph by the RDF converter.
     combine_meta = dict(
         ChainMap(
             meta or {},
@@ -642,9 +633,7 @@ def from_sssom_rdf(
         )
     )
 
-    _set_metadata_in_mapping_set(mapping_set, metadata=combine_meta, overwrite=False)
-    mdoc = MappingSetDocument(mapping_set=mapping_set, converter=converter)
-    return to_mapping_set_dataframe(mdoc)
+    return MappingSetRDFConverter().msdf_from_rdf(g, cc=converter, meta=combine_meta)
 
 
 def from_sssom_json(
diff --git a/src/sssom/rdf_internal.py b/src/sssom/rdf_internal.py
new file mode 100644
index 00000000..cd7d378d
--- /dev/null
+++ b/src/sssom/rdf_internal.py
@@ -0,0 +1,992 @@
+"""Internal code for RDF import and export."""
+
+from __future__ import annotations
+
+import logging
+from datetime import date
+from typing import Any, Callable, Dict, List, Optional, Set, Type, Union, cast
+
+from curies import Converter
+from linkml_runtime.linkml_model.meta import SlotDefinition
+from linkml_runtime.utils.schemaview import SchemaView
+from pandas import DataFrame, Series
+from rdflib import BNode, Graph, Literal, Node, URIRef
+from rdflib.namespace import RDF, RDFS, XSD
+from typing_extensions import override
+
+from .constants import (
+    ENTITY_TYPE_RDFS_LITERAL,
+    EXTENSION_DEFINITIONS,
+    MAPPING_SET_ID,
+    MAPPINGS,
+    NO_TERM_FOUND,
+    OBJECT_ID,
+    OBJECT_TYPE,
+    PREDICATE_ID,
+    PREDICATE_MODIFIER,
+    PREDICATE_MODIFIER_NOT,
+    RECORD_ID,
+    SSSOM_URI_PREFIX,
+    SUBJECT_ID,
+    SUBJECT_TYPE,
+    SSSOMSchemaView,
+)
+from .util import MappingSetDataFrame, sort_df_rows_columns
+
+__all__ = ["MappingSetRDFConverter"]
+
+TRIPLE = tuple[Node, Node, Node]
+DICT_OR_SERIES = Union[Dict[str, Any], Series]
+MAPPINGS_IRI = URIRef(MAPPINGS, SSSOM_URI_PREFIX)
+EXTENSION_DEFINITION_IRI = URIRef(EXTENSION_DEFINITIONS, SSSOM_URI_PREFIX)
+
+CurieConverterProvider = Callable[[], Converter]
+"""A function that can provide a CURIE converter.
+
+We need this contraption because we have to create objects that will
+need to use a CURIE converter at some point, but we want to create such
+objects _before_ we get the converter -- because the converter to use
+will be specific to a given MSDF or a given RDF graph, which is not yet
+known at initialisation time.
+"""
+
+
+class ValueConverter(object):
+    """Base class for all value converters.
+
+    A value converter converts a slot value to or from its RDF
+    representation.
+    """
+
+    def from_rdf(self, obj: Node) -> Any:
+        """Convert a RDF node into a SSSOM slot value.
+
+        :param obj: The node to convert.
+
+        :returns: The converted value.
+
+        :raises ValueError: If the node cannot be converted into the
+            correct type of value for the slot.
+        """
+        raise NotImplementedError
+
+    def to_rdf(self, value: Any) -> Node:
+        """Convert a SSSOM slot value into a RDF node.
+
+        For multi-valued slots, this method will be called once for
+        every value in the slot.
+
+        :param value: The value to convert.
+
+        :returns: A RDF node representing the value.
+        """
+        raise NotImplementedError
+
+
+class BaseStringValueConverter(ValueConverter):
+    """Converter for all string-based slots."""
+
+    primary_type: URIRef
+    allowed_types: Set[URIRef]
+
+    def __init__(
+        self,
+        primary_type: URIRef = XSD.string,
+        allowed_types: Optional[List[URIRef]] = None,
+    ):
+        """Create a new instance.
+
+        :param primary_type: The datatype used to represent the value in
+            RDF context, according to the SSSOM/RDF specification. A
+            value of `rdfs:Resource` means the value is represented as
+            a named resource (IRI) rather than as a literal.
+        :param allowed_types: Additional RDF types that are acceptable
+            to represent the value in RDF context.
+        """
+        self.primary_type = primary_type
+        if allowed_types is not None:
+            self.allowed_types = set(allowed_types)
+        else:
+            self.allowed_types = set()
+
+    @override
+    def from_rdf(self, obj: Node) -> str:
+        """Convert a RDF node into a string-based value."""
+        if isinstance(obj, URIRef) and (
+            self.primary_type == RDFS.Resource or RDFS.Resource in self.allowed_types
+        ):
+            return str(obj)
+        elif isinstance(obj, Literal):
+            # A "naked" literal is a xsd:string literal
+            datatype = obj.datatype or XSD.string
+            if datatype == self.primary_type or datatype in self.allowed_types:
+                return str(obj.value)
+
+        if self.primary_type == RDFS.Resource:
+            msg = "Invalid node type (named resource expected)"
+        else:
+            msg = f"Invalid node type ({self.primary_type} literal expected)"
+        raise ValueError(msg)
+
+    @override
+    def to_rdf(self, value: str) -> Node:
+        """Convert a string-based value into a RDF node."""
+        if self.primary_type == RDFS.Resource:
+            return URIRef(value)
+        elif self.primary_type == XSD.string:
+            # Datatype is not needed for a xsd:string
+            return Literal(value)
+        else:
+            return Literal(value, datatype=self.primary_type)
+
+
+class StringValueConverter(BaseStringValueConverter):
+    """Converter for string-typed slots.
+
+    A string-typed slot is quite naturally represented by a string
+    literal. However, for compatibility with the LinkML-based loader,
+    we also accept a named resource when converting from RDF.
+    """
+
+    def __init__(self) -> None:
+        """Create a new instance."""
+        super().__init__(allowed_types=[RDFS.Resource])
+
+
+class NonRelativeURIValueConverter(BaseStringValueConverter):
+    """Converter for SSSOM URI-typed slots.
+
+    As par the SSSOM/RDF specification, a URI-typed slot is represented
+    as a named RDF resource. However when converting from RDF, we also
+    accept (1) `xsd:anyURI` literals (as recommended by the spec) and
+    (2) `xsd:string` literals (for compatibility with the LinkML-based
+    loader).
+    """
+
+    def __init__(self) -> None:
+        """Create a new instance."""
+        super().__init__(primary_type=RDFS.Resource, allowed_types=[XSD.string, XSD.anyURI])
+
+
+class EntityReferenceValueConverter(BaseStringValueConverter):
+    """Converter for EntityReference-typed slots.
+
+    Entity references are represented as named resources in RDF, but we
+    also accept string literals for backwards compatibility.
+
+    Importantly, throughout SSSOM-Py entity references are expected to
+    be stored in CURIE form, so this converter must take care of
+    compressing the values when converting from RDF and conversely
+    expanding them when converting to RDF.
+    """
+
+    ccp: CurieConverterProvider
+
+    def __init__(self, ccp: CurieConverterProvider):
+        """Create a new instance.
+
+        :param ccp: An object that shall provide the CURIE converter to
+            use for CURIE expansion/contraction.
+        """
+        super().__init__(primary_type=RDFS.Resource, allowed_types=[XSD.string])
+        self.ccp = ccp
+
+    @override
+    def from_rdf(self, obj: Node) -> str:
+        """Convert a RDF node into an entity reference value."""
+        value = super().from_rdf(obj)
+        return self.ccp().compress(value, passthrough=True)
+
+    @override
+    def to_rdf(self, value: str) -> Node:
+        """Convert an entity reference value into a RDF node."""
+        value = self.ccp().expand(value, passthrough=True)
+        return super().to_rdf(value)
+
+
+class DateValueConverter(ValueConverter):
+    """Converter for date-typed slots.
+
+    Date-typed slots are represented in RDF as ISO-formatted `xsd:date`
+    literals.
+    """
+
+    @override
+    def from_rdf(self, obj: Node) -> date:
+        """Convert a RDF node into a SSSOM date value."""
+        if isinstance(obj, Literal) and obj.datatype == XSD.date:
+            # RDFLib guarantees us to return a date
+            return cast(date, obj.toPython())
+
+        raise ValueError("Invalid node type (xsd:date literal expected)")
+
+    @override
+    def to_rdf(self, value: Union[str, date]) -> Node:
+        """Convert a SSSOM date value into a RDF node."""
+        if isinstance(value, date):
+            return Literal(value, datatype=XSD.date)
+        else:
+            # Let's just hope the value is already in the shape
+            # of an ISO-formatted date...
+            return Literal(str(value), datatype=XSD.date)
+
+
+class DoubleValueConverter(ValueConverter):
+    """Converter for double-typed slots.
+
+    Double-typed slots are represented in RDF as `xsd:double` literals.
+    """
+
+    @override
+    def from_rdf(self, obj: Node) -> float:
+        """Convert a RDF node into a SSSOM double value."""
+        if isinstance(obj, Literal) and obj.datatype == XSD.double:
+            # RDFLib guarantees us to return a float
+            return cast(float, obj.toPython())
+
+        raise ValueError("Invalid node type (xsd:double expected)")
+
+    @override
+    def to_rdf(self, value: float) -> Node:
+        """Convert a SSSOM double value into a RDF node."""
+        return Literal(value, datatype=XSD.double)
+
+
+class EnumValueConverter(ValueConverter):
+    """Converter for enum-typed slots.
+
+    An enum value is represented in RDF as a named resource if the value
+    is defined (in the LinkML model) as having a `meaning` IRI, or as a
+    string literal otherwise.
+
+    When parsing, even if the value does have a `meaning` IRI we accept
+    both the named resource form and the string literal form.
+    """
+
+    allowed_values: Set[str]
+    values_by_uri: Dict[URIRef, str]
+    uris_by_value: Dict[str, URIRef]
+
+    def __init__(self, schema: SchemaView, name: str):
+        """Create a new instance.
+
+        :param schema: The SSSOM LinkML schema.
+        :param name: The name of the enum type.
+        """
+        self.values_by_iri = {}
+        self.uris_by_value = {}
+
+        definition = schema.get_enum(name)
+        self.allowed_values = set(definition.permissible_values.keys())
+        for k, v in definition.permissible_values.items():
+            if v.meaning is not None:
+                uri = URIRef(schema.expand_curie(v.meaning))
+                self.values_by_iri[uri] = k
+                self.uris_by_value[k] = uri
+
+    @override
+    def from_rdf(self, obj: Node) -> Any:
+        """Convert a RDF node into a SSSOM enum value."""
+        if isinstance(obj, URIRef):
+            value = self.values_by_iri.get(obj)
+            if value is None:
+                raise ValueError(f"Invalid enum value {obj}")
+            return value
+        elif isinstance(obj, Literal):
+            if obj.datatype is None or obj.datatype == XSD.string:
+                if obj.value not in self.allowed_values:
+                    raise ValueError(f"Invalid enum value {obj}")
+                return obj.value
+
+        raise ValueError("Invalid node type (IRI or string literal expected)")
+
+    @override
+    def to_rdf(self, value: Any) -> Node:
+        """Convert a SSSOM enum value into a RDF node."""
+        # Make sure we have a _text_ value, regardless what the rest of
+        # SSSOM-Py can give us...
+        value = str(value)
+        uri = self.uris_by_value.get(value)
+        if uri is not None:
+            return uri
+        else:
+            # We do _not_ check whether the value is a valid value for
+            # the enum. If it is not, then something wrong happened
+            # upstream of us (a set was constructed or accepted with
+            # invalid values) and it's not up to us to deal with the
+            # the fallout.
+            return Literal(value)
+
+
+class ValueConverterFactory(object):
+    """Helper object to create value converters."""
+
+    constructors: Dict[str, Type[ValueConverter]]
+
+    def __init__(self) -> None:
+        """Create a new instance."""
+        self.constructors = {
+            "date": DateValueConverter,
+            "double": DoubleValueConverter,
+            "string": StringValueConverter,
+            "ncname": StringValueConverter,
+            "EntityReference": EntityReferenceValueConverter,
+            "uriorcurie": EntityReferenceValueConverter,
+            "NonRelativeURI": NonRelativeURIValueConverter,
+        }
+
+    def create(
+        self, range_name: str, schema: SchemaView, ccp: CurieConverterProvider
+    ) -> Optional[ValueConverter]:
+        """Create a new value converter.
+
+        :param range_name: The range for which a value converter is
+            wanted.
+        :param schema: The SSSOM LinkML schema.
+        :param ccp: The object that will provide the CURIE converter to
+            use, for the value converters that need one.
+
+        :returns: A suitable value converter for the range. May be None
+            if the range is not a scalar range.
+        """
+        if schema.get_class(range_name) is not None:
+            # This range is for objects, not scalar values
+            return None
+
+        if range_name.endswith("_enum"):
+            return EnumValueConverter(schema, range_name)
+
+        ctor = self.constructors.get(range_name)
+        if ctor == EntityReferenceValueConverter:
+            # CURIE provider needed
+            return EntityReferenceValueConverter(ccp)
+        elif ctor is not None:
+            return ctor()
+        else:
+            # This should only happen if a brand new type of slot has
+            # been introduced in the SSSOM schema
+            raise NotImplementedError(f"Range {range_name} is not supported")
+
+
+class ObjectConverter(object):
+    """Base class for conversion of SSSOM objects to and from RDF.
+
+    One instance of this class will handle the (de)serialisation of one
+    particular type of object (e.g. MappingSet, Mapping).
+
+    The base class implements the logic that is common to all types of
+    objects. It should be subclassed for objects that require specific
+    logic.
+    """
+
+    name: str
+    """The name of the SSSOM class whose conversion is handled by this
+    object."""
+
+    object_uri: URIRef
+    """The URI representing the SSSOM class in RDF context."""
+
+    slots_by_name: Dict[str, SlotDefinition]
+    """All the valid slots for the class, addressed by their names."""
+
+    slots_by_uri: Dict[URIRef, SlotDefinition]
+    """All the valid slots for the class, addressed by the URIs that
+    represent them in RDF context."""
+
+    value_converters: Dict[str, ValueConverter]
+    """All the value converters used to convert slot values to/from RDF,
+    addressed by slot range."""
+
+    schema: SSSOMSchemaView
+    """Helper object to access information from the SSSOM schema."""
+
+    ccp: CurieConverterProvider
+    """The object to call when CURIE expansion/contraction is needed."""
+
+    def __init__(self, class_name: str, ccp: CurieConverterProvider):
+        """Create a new instance for a class of objects.
+
+        :param class_name: The name of the SSSOM class of objects to
+            convert.
+        :param ccp: A callable object that shall provide a CURIE
+            converter on demand.
+        """
+        self.schema = SSSOMSchemaView()
+        self.ccp = ccp
+
+        # Prepare the slot tables...
+        self.slots_by_name = {}
+        self.slots_by_uri = {}
+        ranges: List[SlotDefinition] = []
+        for slot in self.schema.view.class_induced_slots(class_name):
+            self.slots_by_name[slot.name] = slot
+            self.slots_by_uri[self._get_slot_uri(slot)] = slot
+            ranges.append(slot.range)
+
+        # ... and the scalar converters table
+        self.value_converters = {}
+        factory = ValueConverterFactory()
+        for rng in set(ranges):
+            vc = factory.create(rng, self.schema.view, ccp)
+            if vc is not None:
+                self.value_converters[rng] = vc
+
+        # The name and URI of the class
+        self.name = self._fix_class_name(class_name)
+        object_class = self.schema.view.get_class(class_name)
+        if object_class.class_uri is not None:
+            self.object_uri = URIRef(self.schema.view.expand_curie(object_class.class_uri))
+        else:
+            self.object_uri = URIRef(self.name, SSSOM_URI_PREFIX)
+
+    #
+    # Conversion from RDF
+    #
+
+    def dict_from_rdf(
+        self, g: Graph, subject: Node, dest: Optional[Dict[str, Any]] = None
+    ) -> Dict[str, Any]:
+        """Parse a SSSOM object from a RDF node.
+
+        Given a RDF node representing a SSSOM object, this method
+        constructs a dictionary from all the triples where the node is
+        the subject.
+
+        :param g: The graph to parse the object from.
+        :param subject: The root node of the object to extract.
+        :param dest: The dictionary into which the parsed object will be
+            stored, if specified. Client code may use this argument to
+            provide a "pre-filled" dictionary with default values. If
+            not provided, a new empty dictionary will be used instead.
+
+        :returns: A dictionary representing the SSSOM object, where keys
+            are the slot names. This will be the same dictionary as the
+            `dest` argument, if present.
+
+        :raises ValueError: If the contents of the RDF graph does not
+            represent a valid SSSOM object.
+        """
+        if dest is None:
+            dest = {}
+        self._init_dict_from_rdf(g, subject, dest)
+
+        for pred, obj in g.predicate_objects(subject):
+            pred = cast(URIRef, pred)
+            if pred == RDF.type:
+                if obj != self.object_uri:
+                    raise ValueError(f"Invalid type {obj} for a {self.name} object")
+                continue
+
+            if self._process_triple(g, cast(TRIPLE, [subject, pred, obj]), dest):
+                continue
+
+            slot = self.slots_by_uri.get(pred)
+            if slot is not None:
+                try:
+                    value = self._get_value_converter(slot).from_rdf(obj)
+                except ValueError as e:
+                    raise ValueError(f"Invalid value for {slot.name}", e)
+                if slot.multivalued:
+                    self._multivalue_from_rdf(value, slot.name, dest)
+                else:
+                    dest[slot.name] = value
+            elif not self._extension_from_rdf(cast(TRIPLE, [subject, pred, obj]), dest):
+                logging.warning(f"Ignoring unexpected triple {subject} {pred} {obj}")
+
+        return dest
+
+    # Helper methods for conversion from RDF
+
+    def _init_dict_from_rdf(self, g: Graph, subject: Node, dest: Dict[str, Any]) -> None:
+        """Initialize a dictionary representing a parsed object.
+
+        This method is used to check that the subject node is of a
+        suitable type for the object to be parsed. Subclasses may
+        override it to alter the check as needed and also to perform
+        any additional specific operations at the beginning of the
+        conversion.
+
+        :param g: The graph to parse the object from.
+        :param subject: The root node of the object to extract.
+        :param dest: The dictionary in which to store the parsed object.
+
+        :raises ValueError: If the provided root node is not suitable
+            for the type of object to extract.
+        """
+        if not isinstance(subject, BNode):
+            raise ValueError(f"Invalid node type for a {self.name} object")
+
+    def _process_triple(self, g: Graph, triple: TRIPLE, dest: Dict[str, Any]) -> bool:
+        """Process an individual triple associated with a SSSOM object.
+
+        This method is intended to allow subclasses to implement custom
+        processing of some RDF triples, before letting the triple being
+        handled by the common logic in the `dict_from_rdf` method.
+
+        :param g: The graph to parse the object from.
+        :param triple: The triple to process.
+        :param dest: The dictionary in which to store the parsed object.
+
+        :returns: True if the triple has been processed successfully, or
+            False to let the triple be handed by the common logic.
+        """
+        return False
+
+    def _extension_from_rdf(self, triple: TRIPLE, dest: Dict[str, Any]) -> bool:
+        """Process a triple that may represent an extension slot.
+
+        :param triple: The triple to process.
+        :param dest: The dictionary in which to store the parsed object.
+
+        :returns: True if the triple does represent a valid extension
+            slot, False otherwise.
+        """
+        # FIXME: Not implemented yet, ignore all for now
+        return False
+
+    def _multivalue_from_rdf(self, value: Any, slot_name: str, dest: Dict[str, Any]) -> None:
+        """Store a single value into a multi-valued slot.
+
+        Subclasses should override this method if the object for which
+        they are intended does not represent multi-valued slots as a
+        simple list.
+
+        :param value: The value to store.
+        :param slot_name: The name of the slot the value is for.
+        :param dest: The dictionary in which to store the parsed object.
+        """
+        if slot_name not in dest:
+            dest[slot_name] = [value]
+        else:
+            dest[slot_name].append(value)
+
+    #
+    # Conversion to RDF
+    #
+
+    def dict_to_rdf(self, g: Graph, obj: DICT_OR_SERIES) -> Node:
+        """Export a SSSOM object to a RDF graph.
+
+        :param g: The graph to export the object to.
+        :param obj: The dictionary representing the SSSOM object to
+            export.
+
+        :returns: The root node representing the exporting object.
+        """
+        subject = self._init_dict_to_rdf(g, obj)
+        g.add(cast(TRIPLE, [subject, RDF.type, self.object_uri]))
+
+        for k, v in obj.items():
+            key = str(k)
+            if self._process_slot(g, subject, key, v):
+                continue
+
+            slot = self.slots_by_name.get(key)
+            if slot is not None:
+                pred = self._get_slot_uri(slot)
+                converter = self._get_value_converter(slot)
+                if slot.multivalued:
+                    for value in self._get_multi_values(v):
+                        if not self._is_empty(value):
+                            o = converter.to_rdf(value)
+                            g.add(cast(TRIPLE, [subject, pred, o]))
+                else:
+                    if not self._is_empty(v):
+                        g.add(cast(TRIPLE, [subject, pred, converter.to_rdf(v)]))
+            elif not self._extension_to_rdf(g, subject, key, v):
+                logging.warning(f"Ignoring unexpected {key}={v} slot")
+
+        return subject
+
+    # Helper methods for conversion to RDF
+
+    def _is_empty(self, value: Any) -> bool:
+        """Check is value is an empty value.
+
+        This method is mostly a hack to cope with the fact that "empty"
+        values are not properly represented as such in the data frame
+        part of a MSDF (apart for double-typed slots).
+
+        :param value: The value to check.
+
+        :returns: True if the value is empty.
+        """
+        return value is None or (hasattr(value, "__len__") and len(value) == 0)
+
+    def _init_dict_to_rdf(self, g: Graph, obj: DICT_OR_SERIES) -> Node:
+        """Create the root node representing a SSSOM object.
+
+        Subclasses should override this method to customize the way
+        their SSSOM object is represented in RDF. The default bhaviour
+        is to represent the object as a blank node.
+        """
+        return BNode()
+
+    def _process_slot(self, g: Graph, subject: Node, name: str, value: Any) -> bool:
+        """Process an individual slot for RDF export.
+
+        This method is intended to allow subclasses to implement custom
+        processing to export some SSSOM slots, before letting the slot
+        being handled by the common logic in the `dict_to_rdf` method.
+
+        :param g: The graph the object is exported to.
+        :param subject: The node representing the exported object.
+        :param name: The name of the slot to process.
+        :param value: The value of the slot:
+
+        :returns: True if the slot has been processed successfully, or
+            False to let the slot be handled by the common logic.
+        """
+        return False
+
+    def _extension_to_rdf(self, g: Graph, subject: Node, name: str, value: Any) -> bool:
+        """Export an extension slot to RDF.
+
+        :param g: The graph to export to.
+        :param subject: The node representing the exported object.
+        :param name: The name of the extension slot.
+        :param value: The value of the extension slot.
+
+        :returns: True if `name` is the name of a valid extension,
+            otherwise False.
+        """
+        # FIXME: Not implemented yet, ignore all for now
+        return False
+
+    def _get_multi_values(self, value: Any) -> List[Any]:
+        """Get the values of a multi valued slot as a list.
+
+        Subclasses should override this method if their object does not
+        represent multi-valued slots as a simple list.
+
+        :param value: The object representing the value of a multivalued
+            slot.
+
+        :returns: The list of values.
+        """
+        if not isinstance(value, list):
+            # Should not really happen (the value of a multi-valued slot
+            # should always be a list, even if it has only one value),
+            # but just in case
+            return [value]
+        else:
+            return value
+
+    #
+    # Other helper methods
+    #
+
+    def _get_value_converter(self, slot: SlotDefinition) -> ValueConverter:
+        """Get the value converter for a given slot.
+
+        :param slot: The slot for which to convert value.
+
+        :returns: A value converter suitable to convert a RDF node into
+            a SSSOM slot value, or a SSSOM slot value into a RDF node.
+        """
+        converter = self.value_converters.get(slot.range)
+        if converter is None:
+            # This should have been caught already at init time by the
+            # ValueConverterFactory
+            raise NotImplementedError(f"Unsupported range {slot.range} for {slot.name}")
+        return converter
+
+    def _get_slot_uri(self, slot: SlotDefinition) -> URIRef:
+        """Get the URI that represents a SSSOM slot.
+
+        A SSSOM slot is represented by a property whose URI is either
+        explicitly defined in the LinkML model (in which case it is
+        available in the `slot_uri` field of the slot definition), or
+        constructed as `sssom:slot_name`.
+
+        :param slot: The slot definition.
+
+        :returns: The URI that represents the slot in RDF context.
+        """
+        if slot.slot_uri is not None:
+            return URIRef(self.schema.view.expand_curie(slot.slot_uri))
+        else:
+            return URIRef(slot.name, SSSOM_URI_PREFIX)
+
+    def _fix_class_name(self, name: str) -> str:
+        """Transform a LinkML class name.
+
+        The SSSOM LinkML schema defines its classes with lower-case,
+        space-containing names, which must be transformed into
+        Pascal-cased names (e.g. `mapping set` becomes `MappingSet`).
+        There does not seem to be a way to obtain the transformed name
+        from the SSSOMSchemaView object (or any other LinkML object),
+        so we do the transformation here.
+
+        :param name: The original name of a LinkML-defined class.
+
+        :returns: The Pascal-case form of the name.
+        """
+        fixed: List[str] = []
+        upper = True
+        for _, c in enumerate(name):
+            if c == " ":
+                upper = True
+            elif upper:
+                fixed.append(c.upper())
+                upper = False
+            else:
+                fixed.append(c)
+        return "".join(fixed)
+
+
+class MappingSetRDFConverter(ObjectConverter):
+    """Helper class to convert mapping sets to/from RDF.
+
+    Use this class to deserialise a mapping set from a RDF graph into a
+    MappingSetDataFrame object::
+
+        from rdflib import Graph
+
+        g = Graph().parse("my_set.sssom.ttl")
+        rdf_converter = MappingSetRDFConverter()
+        msdf = rdf_converter.msdf_from_rdf(g)
+
+    or to serialise a MappingSetDataFrame into a RDF graph::
+
+        g = rdf_converter().msdf_to_rdf(msdf)
+        g.serialize("my_set.sssom.ttl")
+
+    """
+
+    mapping_converter: ObjectConverter
+    extension_definition_converter: ObjectConverter
+    curie_converter: Converter
+    hydrate: bool
+
+    def __init__(self, hydrate: bool = False):
+        """Create a new instance.
+
+        :param hydrate: Default value for the `hydrate` parameter of the
+            `msdf_to_rdf` method.
+        """
+        super().__init__("mapping set", self.get_curie_converter)
+        self.mapping_converter = MappingConverter(self.get_curie_converter)
+        self.extension_definition_converter = ObjectConverter(
+            "extension definition", self.get_curie_converter
+        )
+        self.hydrate = hydrate
+        self.curie_converter = Converter()
+
+    def get_curie_converter(self) -> Converter:
+        """Provide the current CURIE converter."""
+        return self.curie_converter
+
+    #
+    # Conversion from RDF
+    #
+
+    def msdf_from_rdf(
+        self, g: Graph, cc: Optional[Converter] = None, meta: Optional[Dict[str, Any]] = None
+    ) -> MappingSetDataFrame:
+        """Extract a MappingSetDataFrame from a RDF graph.
+
+        This is the main method intended for use by client code for RDF
+        parsing.
+
+        :param g: The graph to parse from.
+        :param cc: The CURIE converter to use for all CURIE expansion
+            or contraction operations. If not specified, a converter
+            based on the namespaces declared within the graph will be
+            used instead. This is the converter that will be associated
+            with the returned MappingSetDataFrame object.
+        :param meta: Default metadata to use, if any.
+
+        :returns: The first MappingSetDataFrame found in the graph.
+        """
+        if cc is None:
+            cc = Converter.from_rdflib(g)
+        self.curie_converter = cc
+
+        sets = [s for s in g.subjects(RDF.type, self.object_uri)]
+        if len(sets) == 0:
+            raise Exception("No mapping set in graph")
+        elif len(sets) > 1:
+            logging.warning("More than one mapping set in graph, ignoring supernumerary sets")
+
+        meta = self.dict_from_rdf(g, sets[0], dest=meta)
+        if MAPPINGS in meta:
+            # dict_from_rdf returns a dictionary containing everything,
+            # including the mappings. We must take the mappings out and
+            # turn them into a data frame instead.
+            mappings = meta.pop(MAPPINGS)
+            df = sort_df_rows_columns(DataFrame(m for m in mappings))
+        else:
+            # Empty set?
+            df = DataFrame()
+
+        return MappingSetDataFrame.with_converter(df=df, metadata=meta, converter=cc)
+
+    @override
+    def _init_dict_from_rdf(self, g: Graph, subject: Node, dest: Dict[str, Any]) -> None:
+        # A mapping set can (and in fact *should*) be represented by a
+        # named resource, which is then interpreted as the value of the
+        # MAPPING_SET_ID slot.
+        if isinstance(subject, URIRef):
+            dest[MAPPING_SET_ID] = str(subject)
+        elif not isinstance(subject, BNode):
+            raise ValueError("Invalid node type for a MappingSet object")
+
+        # Extension definitions should be processed early on, so that we
+        # have them at hand when we'll process the individual triples.
+        extension_definitions: List[Dict[str, Any]] = []
+        for ed_node in g.objects(subject, EXTENSION_DEFINITION_IRI):
+            ed = self.extension_definition_converter.dict_from_rdf(g, ed_node)
+            extension_definitions.append(ed)
+        if len(extension_definitions) > 0:
+            dest[EXTENSION_DEFINITIONS] = extension_definitions
+
+    @override
+    def _process_triple(self, g: Graph, triple: TRIPLE, dest: Dict[str, Any]) -> bool:
+        done = False
+        if triple[1] == MAPPINGS_IRI:
+            mapping = self.mapping_converter.dict_from_rdf(g, triple[2])
+            if MAPPINGS not in dest:
+                dest[MAPPINGS] = [mapping]
+            else:
+                dest[MAPPINGS].append(mapping)
+            done = True
+        elif triple[1] == EXTENSION_DEFINITION_IRI:
+            # Already dealt with in the initialisation step
+            done = True
+
+        return done
+
+    #
+    # Conversion to RDF
+    #
+
+    def msdf_to_rdf(
+        self,
+        msdf: MappingSetDataFrame,
+        g: Optional[Graph] = None,
+        cc: Optional[Converter] = None,
+        hydrate: Optional[bool] = None,
+    ) -> Graph:
+        """Export a MappingSetDataFrame into a RDF graph.
+
+        This is the main method intended for use by client code for RDF
+        export.
+
+        :param msdf: The MappingSetDataFrame to export.
+        :param g: The graph to export to. If not given a new graph will
+            be created.
+        :param cc: The CURIE converter to use for all CURIE expansion or
+            contraction operations. If not given, the converter bound to
+            the MappingSetDataFrame will be used instead.
+        :param hydrate: Whether to generate "direct triples" for each
+            mapping in the MappingSetDataFrame.
+
+        :returns: The RDF graph with the exported MappingSetDataFrame.
+            This will be the same object as the `g` argument, if given.
+        """
+        if g is None:
+            g = Graph()
+        self.curie_converter = cc or msdf.converter
+        for k, v in self.curie_converter.bimap.items():
+            g.namespace_manager.bind(k, v)
+        if hydrate is None:
+            hydrate = self.hydrate
+        ms_node = self.dict_to_rdf(g, msdf.metadata)
+        for _, row in msdf.df.iterrows():
+            self._mapping_to_rdf(g, ms_node, row, hydrate)
+
+        return g
+
+    @override
+    def _init_dict_to_rdf(self, g: Graph, obj: DICT_OR_SERIES) -> Node:
+        if MAPPING_SET_ID in obj:
+            return URIRef(obj[MAPPING_SET_ID])
+        else:
+            return BNode()
+
+    @override
+    def _process_slot(self, g: Graph, subject: Node, name: str, value: Any) -> bool:
+        done = False
+        if name == MAPPING_SET_ID:
+            # Already dealt with in the initialisation step
+            done = True
+        elif name == EXTENSION_DEFINITIONS:
+            for ed in value:
+                ed_node = self.extension_definition_converter.dict_to_rdf(g, ed)
+                g.add(cast(TRIPLE, [subject, EXTENSION_DEFINITION_IRI, ed_node]))
+            done = True
+        elif name == MAPPINGS:
+            # We don't really expect to have any mappings here, as the
+            # dict_to_rdf method is supposed to be called with only the
+            # metadata part of a MappingSetDataFrame. Still, we cover
+            # possibility, just in case.
+            for mapping in value:
+                self._mapping_to_rdf(g, subject, mapping, self.hydrate)
+            done = True
+
+        return done
+
+    def _mapping_to_rdf(
+        self, g: Graph, subject: Node, mapping: DICT_OR_SERIES, hydrate: bool
+    ) -> None:
+        mapping_node = self.mapping_converter.dict_to_rdf(g, mapping)
+        g.add(cast(TRIPLE, [subject, MAPPINGS_IRI, mapping_node]))
+
+        if hydrate:
+            subject_id = mapping.get(SUBJECT_ID)
+            predicate_id = mapping.get(PREDICATE_ID)
+            object_id = mapping.get(OBJECT_ID)
+
+            if (
+                mapping.get(SUBJECT_TYPE) != ENTITY_TYPE_RDFS_LITERAL
+                and mapping.get(OBJECT_TYPE) != ENTITY_TYPE_RDFS_LITERAL
+                and mapping.get(PREDICATE_MODIFIER) != PREDICATE_MODIFIER_NOT
+                and subject_id is not None
+                and subject_id != NO_TERM_FOUND
+                and object_id is not None
+                and object_id != NO_TERM_FOUND
+                and predicate_id is not None
+            ):
+                subject_ref = URIRef(self.curie_converter.expand(subject_id))
+                pred_ref = URIRef(self.curie_converter.expand(predicate_id))
+                object_ref = URIRef(self.curie_converter.expand(object_id))
+                g.add(cast(TRIPLE, [subject_ref, pred_ref, object_ref]))
+
+
+class MappingConverter(ObjectConverter):
+    """Specialised class to (de)serialise Mapping objects."""
+
+    def __init__(self, ccp: CurieConverterProvider) -> None:
+        """Create a new instance."""
+        super().__init__("mapping", ccp)
+
+    @override
+    def _init_dict_from_rdf(self, g: Graph, subject: Node, dest: Dict[str, Any]) -> None:
+        # If the root node is a named resource, then it is interpreted
+        # as the RECORD_ID for the mapping.
+        if isinstance(subject, URIRef):
+            dest[RECORD_ID] = self.ccp().compress(str(subject), passthrough=True)
+        elif not isinstance(subject, BNode):
+            raise ValueError(f"Invalid node type for a {self.name} object")
+
+    @override
+    def _multivalue_from_rdf(self, value: Any, slot_name: str, dest: Dict[str, Any]) -> None:
+        # Within the data frame part of a MappingSetDataFrame, a
+        # multivalued slot is expected to be represented as a single
+        # string containing |-separated values.
+        if slot_name not in dest:
+            dest[slot_name] = value
+        else:
+            dest[slot_name] = dest[slot_name] + "|" + value
+
+    @override
+    def _init_dict_to_rdf(self, g: Graph, obj: DICT_OR_SERIES) -> Node:
+        if RECORD_ID in obj:
+            return URIRef(self.ccp().expand(obj[RECORD_ID]))
+        else:
+            return BNode()
+
+    @override
+    def _get_multi_values(self, value: Any) -> List[Any]:
+        return cast(List[Any], value.split("|"))
diff --git a/src/sssom/writers.py b/src/sssom/writers.py
index 387496c1..345c31e2 100644
--- a/src/sssom/writers.py
+++ b/src/sssom/writers.py
@@ -18,7 +18,6 @@
     TextIO,
     Tuple,
     Union,
-    cast,
 )
 
 import pandas as pd
@@ -27,17 +26,17 @@
 from curies import Converter
 from deprecation import deprecated
 from jsonasobj2 import JsonObj
-from linkml_runtime.dumpers import JSONDumper, rdflib_dumper
-from linkml_runtime.utils.schemaview import SchemaView
+from linkml_runtime.dumpers import JSONDumper
 from rdflib import Graph, URIRef
 from rdflib.namespace import OWL, RDF
 from sssom_schema import slots
 
 from sssom.validators import check_all_prefixes_in_curie_map
 
-from .constants import CURIE_MAP, PREDICATE_MODIFIER_NOT, SCHEMA_YAML, SSSOM_URI_PREFIX, PathOrIO
+from .constants import CURIE_MAP, PREDICATE_MODIFIER_NOT, SSSOM_URI_PREFIX, PathOrIO
 from .context import _load_sssom_context
 from .parsers import to_mapping_set_document
+from .rdf_internal import MappingSetRDFConverter
 from .util import (
     RDF_FORMATS,
     SSSOM_DEFAULT_RDF_SERIALISATION,
@@ -372,16 +371,7 @@ def to_owl_graph(msdf: MappingSetDataFrame) -> Graph:
 
 def to_rdf_graph(msdf: MappingSetDataFrame, *, hydrate: bool = False) -> Graph:
     """Convert a mapping set dataframe to an RDF graph."""
-    doc = to_mapping_set_document(msdf)
-    graph = rdflib_dumper.as_rdf_graph(
-        element=doc.mapping_set,
-        schemaview=SchemaView(SCHEMA_YAML),
-        # TODO Use msdf.converter directly via https://github.com/linkml/linkml-runtime/pull/278
-        prefix_map=msdf.converter.bimap,
-    )
-    if hydrate:
-        _hydrate_axioms(graph, add_no_term_found=False, add_negative=False)
-    return cast(Graph, graph)
+    return MappingSetRDFConverter().msdf_to_rdf(msdf, hydrate=hydrate)
 
 
 EXAMPLE_SPARQL_QUERY = """\
diff --git a/tests/data/pre-standard-rdf.ttl b/tests/data/pre-standard-rdf.ttl
new file mode 100644
index 00000000..c82869c3
--- /dev/null
+++ b/tests/data/pre-standard-rdf.ttl
@@ -0,0 +1,26 @@
+@prefix COMENT: <https://example.com/entities/> .
+@prefix ORGENT: <https://example.org/entities/> .
+@prefix dcterms: <http://purl.org/dc/terms/> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix semapv: <https://w3id.org/semapv/vocab/> .
+@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
+@prefix sssom: <https://w3id.org/sssom/> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+
+[] a sssom:MappingSet;
+  dcterms:issued "2025-10-28"^^xsd:date;
+  dcterms:license "https://creativecommons.org/licenses/by/4.0/"^^xsd:anyURI;
+  sssom:mapping_set_id "https://example.org/sets/standard-rdf"^^xsd:anyURI;
+  sssom:mappings [ a owl:Axiom;
+      dcterms:created "2025-10-27"^^xsd:date;
+      owl:annotatedProperty skos:closeMatch;
+      owl:annotatedSource ORGENT:0001;
+      owl:annotatedTarget COMENT:0011;
+      sssom:confidence 7.0E-1;
+      sssom:mapping_cardinality "1:1";
+      sssom:mapping_justification semapv:ManualMappingCuration;
+      sssom:object_label "alpha";
+      sssom:predicate_modifier "Not";
+      sssom:subject_label "alice";
+      sssom:subject_type "owl class"
+    ] .
diff --git a/tests/data/record-id-as-node.ttl b/tests/data/record-id-as-node.ttl
new file mode 100644
index 00000000..a528c192
--- /dev/null
+++ b/tests/data/record-id-as-node.ttl
@@ -0,0 +1,19 @@
+@prefix COMENT: <https://example.com/entities/> .
+@prefix ORGENT: <https://example.org/entities/> .
+@prefix dcterms: <http://purl.org/dc/terms/> .
+@prefix mymaps: <https://example.org/sets/mapping/> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix semapv: <https://w3id.org/semapv/vocab/> .
+@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
+@prefix sssom: <https://w3id.org/sssom/> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+
+mymaps:0001 a owl:Axiom;
+  owl:annotatedProperty skos:closeMatch;
+  owl:annotatedSource ORGENT:0001;
+  owl:annotatedTarget COMENT:0011;
+  sssom:mapping_justification semapv:ManualMappingCuration .
+
+<https://example.org/sets/standard-rdf> a sssom:MappingSet;
+  dcterms:license <https://creativecommons.org/licenses/by/4.0/>;
+  sssom:mappings mymaps:0001 .
diff --git a/tests/data/standard-rdf.ttl b/tests/data/standard-rdf.ttl
new file mode 100644
index 00000000..e40c1f8a
--- /dev/null
+++ b/tests/data/standard-rdf.ttl
@@ -0,0 +1,25 @@
+@prefix COMENT: <https://example.com/entities/> .
+@prefix ORGENT: <https://example.org/entities/> .
+@prefix dcterms: <http://purl.org/dc/terms/> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix semapv: <https://w3id.org/semapv/vocab/> .
+@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
+@prefix sssom: <https://w3id.org/sssom/> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+
+<https://example.org/sets/standard-rdf> a sssom:MappingSet;
+  dcterms:issued "2025-10-28"^^xsd:date;
+  dcterms:license <https://creativecommons.org/licenses/by/4.0/>;
+  sssom:mappings [ a owl:Axiom;
+      dcterms:created "2025-10-27"^^xsd:date;
+      owl:annotatedProperty skos:closeMatch;
+      owl:annotatedSource ORGENT:0001;
+      owl:annotatedTarget COMENT:0011;
+      sssom:confidence 7.0E-1;
+      sssom:mapping_cardinality "1:1";
+      sssom:mapping_justification semapv:ManualMappingCuration;
+      sssom:object_label "alpha";
+      sssom:predicate_modifier sssom:NegatedPredicate;
+      sssom:subject_label "alice";
+      sssom:subject_type owl:Class
+    ] .
diff --git a/tests/test_convert.py b/tests/test_convert.py
index e1a15286..f8a40d21 100644
--- a/tests/test_convert.py
+++ b/tests/test_convert.py
@@ -126,7 +126,7 @@ def test_to_rdf_hydrated(self) -> None:
                 "skos:exactMatch",
                 "HP:0003348",
                 SEMAPV.ManualMappingCuration.value,
-                "NOT",
+                "Not",
             ),
             (
                 "mesh:C563052",
@@ -158,6 +158,8 @@ def test_to_rdf_hydrated(self) -> None:
                 "UMLS": "https://uts.nlm.nih.gov/uts/umls/concept/",
                 "mesh": "http://id.nlm.nih.gov/mesh/",
                 "sssom": "https://w3id.org/sssom/",
+                "skos": "http://www.w3.org/2004/02/skos/core#",
+                "semapv": "https://w3id.org/semapv/vocab/",
             }
         )
         msdf = MappingSetDataFrame(df, converter=converter)
diff --git a/tests/test_parsers.py b/tests/test_parsers.py
index 2f37f2e2..369f5d38 100644
--- a/tests/test_parsers.py
+++ b/tests/test_parsers.py
@@ -4,12 +4,13 @@
 import json
 import math
 import os
-import typing
 import unittest
 from collections import ChainMap
+from datetime import date
 from pathlib import Path
 from tempfile import TemporaryDirectory
 from textwrap import dedent
+from typing import Any, Dict, Union, cast, get_args
 from xml.dom import minidom
 
 import numpy as np
@@ -18,7 +19,25 @@
 from curies import Converter
 from rdflib import Graph
 
-from sssom.constants import CURIE_MAP, get_default_metadata
+from sssom.constants import (
+    CONFIDENCE,
+    CURIE_MAP,
+    LICENSE,
+    MAPPING_CARDINALITY,
+    MAPPING_DATE,
+    MAPPING_JUSTIFICATION,
+    MAPPING_SET_ID,
+    OBJECT_ID,
+    OBJECT_LABEL,
+    PREDICATE_ID,
+    PREDICATE_MODIFIER,
+    PUBLICATION_DATE,
+    RECORD_ID,
+    SUBJECT_ID,
+    SUBJECT_LABEL,
+    SUBJECT_TYPE,
+    get_default_metadata,
+)
 from sssom.context import SSSOM_BUILT_IN_PREFIXES, ensure_converter, get_converter
 from sssom.io import parse_file
 from sssom.parsers import (
@@ -29,6 +48,7 @@
     from_sssom_dataframe,
     from_sssom_json,
     from_sssom_rdf,
+    parse_sssom_rdf,
     parse_sssom_table,
     split_dataframe_by_prefix,
 )
@@ -38,6 +58,19 @@
 from tests.constants import test_out_dir
 
 
+def assert_dict_contains(
+    test: unittest.TestCase,
+    expected_values: Dict[str, Any],
+    actual_values: Union[Dict[str, Any], pd.Series],
+) -> None:
+    """Check that a dictionary contains expected values."""
+    for k, v in expected_values.items():
+        if isinstance(v, float):
+            test.assertTrue(np.isclose(v, actual_values[k]))
+        else:
+            test.assertEqual(v, actual_values[k])
+
+
 class TestParse(unittest.TestCase):
     """A test case for parser functionality."""
 
@@ -277,6 +310,38 @@ def test_parse_sssom_rdf(self) -> None:
             f"{self.rdf_graph_file} has the wrong number of mappings.",
         )
 
+    def test_parse_standard_and_old_style_rdf(self) -> None:
+        """Test parsing a RDF conforming to pre-standard and standard SSSOM/RDF serialisation."""
+        msdf = parse_sssom_rdf(f"{test_data_dir}/standard-rdf.ttl")
+        self.assertEqual(msdf.metadata[MAPPING_SET_ID], "https://example.org/sets/standard-rdf")
+        self.assertEqual(msdf.metadata[LICENSE], "https://creativecommons.org/licenses/by/4.0/")
+        self.assertEqual(msdf.metadata[PUBLICATION_DATE], date(2025, 10, 28))
+        expected_values = {
+            SUBJECT_ID: "ORGENT:0001",
+            OBJECT_ID: "COMENT:0011",
+            PREDICATE_ID: "skos:closeMatch",
+            MAPPING_JUSTIFICATION: "semapv:ManualMappingCuration",
+            SUBJECT_LABEL: "alice",
+            OBJECT_LABEL: "alpha",
+            SUBJECT_TYPE: "owl class",
+            MAPPING_CARDINALITY: "1:1",
+            PREDICATE_MODIFIER: "Not",
+            CONFIDENCE: 0.7,
+            MAPPING_DATE: date(2025, 10, 27),
+        }
+        assert_dict_contains(self, expected_values, cast(pd.Series, msdf.df.loc[0]))
+
+        msdf = parse_sssom_rdf(f"{test_data_dir}/pre-standard-rdf.ttl")
+        self.assertEqual(msdf.metadata[MAPPING_SET_ID], "https://example.org/sets/standard-rdf")
+        self.assertEqual(msdf.metadata[LICENSE], "https://creativecommons.org/licenses/by/4.0/")
+        self.assertEqual(msdf.metadata[PUBLICATION_DATE], date(2025, 10, 28))
+        assert_dict_contains(self, expected_values, cast(pd.Series, msdf.df.loc[0]))
+
+    def test_parse_rdf_with_record_id(self) -> None:
+        """Test parsing a RDF file containing record IDs as named resources."""
+        msdf = parse_sssom_rdf(f"{test_data_dir}/record-id-as-node.ttl")
+        self.assertEqual("mymaps:0001", msdf.df.loc[0][RECORD_ID])
+
     def test_parse_sssom_json(self) -> None:
         """Test parsing JSON."""
         msdf = from_sssom_json(
@@ -577,7 +642,7 @@ def test_split_df(self) -> None:
 
         sdf = pd.DataFrame(subrows, columns=columns)
 
-        for method in [None, *typing.get_args(SplitMethod)]:
+        for method in [None, *get_args(SplitMethod)]:
             with self.subTest(method=method):
                 self.assert_msdf(msdf, sdf, method)
 
diff --git a/tests/test_writers.py b/tests/test_writers.py
index 526401c6..3780adf4 100644
--- a/tests/test_writers.py
+++ b/tests/test_writers.py
@@ -13,6 +13,7 @@
 from sssom import MappingSetDataFrame
 from sssom.constants import (
     CREATOR_ID,
+    MAPPING_JUSTIFICATION,
     OBJECT_ID,
     OBJECT_LABEL,
     PREDICATE_ID,
@@ -203,13 +204,15 @@ def test_rdflib_endpoint(self) -> None:
             SUBJECT_ID,
             PREDICATE_ID,
             OBJECT_ID,
-            SEMAPV.ManualMappingCuration.value,
+            MAPPING_JUSTIFICATION,
         ]
         df = pd.DataFrame(rows, columns=columns)
         converter = curies.Converter.from_prefix_map(
             {
                 "DOID": "http://purl.obolibrary.org/obo/DOID_",
                 "UMLS": "https://uts.nlm.nih.gov/uts/umls/concept/",
+                "skos": "http://www.w3.org/2004/02/skos/core#",
+                "semapv": "https://w3id.org/semapv/vocab/",
             }
         )
         msdf = MappingSetDataFrame(df, converter=converter)