v0.3.12.dev

What's Changed

• Attempt one to implement superclassOf by @matentzn in #4
• ptable by @cmungall in #8
• Major IO restructure by @matentzn in #7
• test files by @cmungall in #10
• cliques by @cmungall in #9
• Various changes by @matentzn in #11
• adding ability to summarize cliques by @cmungall in #13
• Update cliquesummary.yaml by @matentzn in #14
• Some small fixes to correlations and crosstab by @matentzn in #15
• Add fail when set of unmatched entities is empty by @matentzn in #16
• Making sure context can be read in distro by @matentzn in #18
• Add mapping_cardinality field by @matentzn in #20
• added dosql, diff commands by @cmungall in #26
• Issue31 by @hrshdhgd in #37
• WIP: random stuff on top of the sparql-util branch by @cmungall in #40
• sparql_util and MappingSetDataFrame by @cmungall in #36
• one remnant mdoc => msdf fixed by @hrshdhgd in #41
• fixed #42 by @hrshdhgd in #43
• Some missing msdf returns #44 : MSDoc => MSDF by @hrshdhgd in #45
• Refactoring parse by @matentzn in #46
• Adding split method by @matentzn in #48
• Cli edit by @hrshdhgd in #49
• Bump urllib3 from 1.26.4 to 1.26.5 by @dependabot in #54
• Adding mapping set description by @matentzn in #53
• Cli edit by @hrshdhgd in #50
• Improving obographs parser by @matentzn in #66
• Trying to add mapping_cardinality enum by @matentzn in #52
• fix nl bug by @cmungall in #76
• Issue 56 by @hrshdhgd in #72
• Apply black and add tox configuration by @cthoyt in #71
• First round of formatting fixes (black) by @matentzn in #84
• Running tests.sh when runniong make test by @matentzn in #86
• Adding "clean prefixes" parameter by @matentzn in #82
• Adding toString method to msdf by @matentzn in #83
• Make QC run on pull requests by @cthoyt in #93
• Migrating to Linkml 1.0.0 by @matentzn in #67
• Update qc.yml by @matentzn in #102
• Input option to argument (click, #100) by @hrshdhgd in #101
• Bugfix: Missing 'validators' install by @joeflack4 in #104
• OLD Cliquesummary by @matentzn in #94
• accommodating for blank confidence #97 by @hrshdhgd in #98
• Edit code for filter_out_prefixes in utils.py by @hrshdhgd in #88
• --input should accept URLs along with local paths by @hrshdhgd in #103
• Sphinx docs by @hrshdhgd in #108
• upgrade linkml by @cmungall in #110
• Rerunning linkml pipeline again by @matentzn in #111
• General refactor (renaming, import/export) by @matentzn in #96
• rewire command by @cmungall in #119
• Update installation (redux) by @cthoyt in #114
• Fixing flake8 and black issues by @matentzn in #127
• Keep imports properly sorted with isort by @cthoyt in #128
• Simplify loading data from inside package by @cthoyt in #132
• Add HMS contributor acknowledgement on README by @cthoyt in #131
• Fix RDF bugs by @matentzn in #134
• Add easy flake8 plugins by @cthoyt in #129
• Including contexts as .py files by @matentzn in #135
• Code cleanup by @cthoyt in #142
• include equivalent properties in rewire by @cmungall in #140
• Improve file handling by @cthoyt in #145
• Add rdflib-jsonld module? by @matentzn in #148
• remove unused linkml dependencies by @cmungall in #151
• Add static type checking with MyPy by @cthoyt in #143
• Normalize usage to prefix_map by @cthoyt in #155
• Remove deprecated MetaTSVConverter by @cthoyt in #146
• Continue the descent into Flake8 Hell by @cthoyt in #156
• Flake8 Round 2: We have to go deeper by @cthoyt in #158
• Flake8 Round 3: We're going to make you an overnight celebrity by @cthoyt in #164
• Update external context and Makefile that generates them by @matentzn in #168
• Bump version to 0.3.3 by @cthoyt in #175
• Post-release updates by @cthoyt in #176
• Updating to new SSSOM model by @matentzn in #172
• reverted back to original url by @hrshdhgd in #178
• Path for sssom.yaml discoverable by other functions through constants.py by @hrshdhgd in #182
• Add MANIFEST.in for PyPI release #183 by @hrshdhgd in #184
• Attempt 2 to solve the issue of sssom.yaml not showing in site-packages after pip install by @hrshdhgd in #185
• Make sure multivalued elements in the model are parsed correctly by @hrshdhgd in #163
• updated sphinx docs per changes in docstrings by @hrshdhgd in #166
• Remove url to old documentation by @hrshdhgd in #192
• Testing, see linkml/linkml#529 by @cmungall in #190
• unpinned rdflib by @hrshdhgd in #193
• remove jsonasobj dependency by @hrshdhgd in #194
• Delete docs on design decisions to not confuse users by @cmungall in #187
• Add windows testing and update path construction by @cthoyt in #171
• Merge can now take n inputs #147 by @hrshdhgd in #195
• make files - refresh sssom by @matentzn in #204
• changed metadata = metadata.prefix_map -> metadata = metadata.metadata by @hrshdhgd in #206
• Curie detection patch by @hrshdhgd in #213
• Get dict of schema by @hrshdhgd in #219
• Add metadata to the results to the dosql function by @hrshdhgd in #222
• Added sort function and tested! fixes #51 by @hrshdhgd in #223
• Make --output-directory default to pwd by @hrshdhgd in #231
• Empty df by @hrshdhgd in #232
• Empty df by @hrshdhgd in #233
• Fixing bug with rewire and updating test by @matentzn in #235
• Solves multiple issues by @hrshdhgd in #234
• Fix bug with default metadata by @matentzn in #238
• Adding mapping predicates to parse() by...