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Run make all (#303)
This PR does not change the underlying schema, it just runs `make all` This also motivates some kind of CI check that when the schema is updated, then this gets run. I want to do this to reduce spurious diff in #302
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project/excel/sssom_schema.xlsx

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project/graphql/sssom_schema.graphql

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@@ -74,6 +74,7 @@ type MappingSet
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objectSourceVersion: String
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mappingProvider: Uri
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mappingTool: String
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mappingToolVersion: String
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mappingDate: Date
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subjectMatchField: [EntityReference]
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objectMatchField: [EntityReference]

project/jsonld/sssom_schema.context.jsonld

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{
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"_comments": "Auto generated from sssom_schema.yaml by jsonldcontextgen.py version: 0.1.1\n Generation date: 2023-06-19T15:06:30\n Schema: sssom\n metamodel version: 1.7.0\n model version: None\n \n id: https://w3id.org/sssom/schema/\n description: Datamodel for Simple Standard for Sharing Ontological Mappings (SSSOM)\n license: https://creativecommons.org/publicdomain/zero/1.0/\n ",
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"comments": {
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"description": "Auto generated by LinkML jsonld context generator",
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"generation_date": "2023-07-25T09:55:30",
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"source": "sssom_schema.yaml"
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},
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"@context": {
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"dc": "http://purl.org/dc/terms/",
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"dcterms": "http://purl.org/dc/terms/",

project/jsonld/sssom_schema.jsonld

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"slot_uri": "https://w3id.org/sssom/mapping_tool_version",
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"owner": "Mapping",
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"domain_of": [
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"MappingSet",
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"Mapping"
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],
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"range": "string",
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"object_source_version",
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"mapping_provider",
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"mapping_tool",
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"mapping_tool_version",
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"mapping_date",
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"subject_match_field",
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"object_match_field",
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],
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"metamodel_version": "1.7.0",
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"source_file": "sssom_schema.yaml",
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"source_file_date": "2023-06-19T14:51:37",
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"source_file_size": 25627,
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"generation_date": "2023-06-19T15:06:31",
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"source_file_date": "2023-07-25T09:52:38",
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"source_file_size": 25654,
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"generation_date": "2023-07-25T09:55:31",
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"@type": "SchemaDefinition",
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"@context": [
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"project/jsonld/sssom_schema.context.jsonld",

project/jsonschema/sssom_schema.schema.json

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project/owl/sssom_schema.owl.ttl

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project/protobuf/sssom_schema.proto

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@@ -75,6 +75,7 @@ message MappingSet
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string objectSourceVersion = 0
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uri mappingProvider = 0
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string mappingTool = 0
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string mappingToolVersion = 0
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date mappingDate = 0
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repeated entityReference subjectMatchField = 0
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repeated entityReference objectMatchField = 0

project/shacl/sssom_schema.shacl.ttl

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project/shex/sssom_schema.shex

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BASE <https://w3id.org/sssom/>
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PREFIX prov: <http://www.w3.org/ns/prov#>
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PREFIX owl: <http://www.w3.org/2002/07/owl#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
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PREFIX linkml: <https://w3id.org/linkml/>
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PREFIX pav: <http://purl.org/pav/>
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PREFIX prov: <http://www.w3.org/ns/prov#>
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PREFIX dcterms: <http://purl.org/dc/terms/>
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<object_source_version> @linkml:String ? ;
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<mapping_provider> @linkml:Uri ? ;
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<mapping_tool> @linkml:String ? ;
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<mapping_tool_version> @linkml:String ? ;
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pav:authoredOn @linkml:Date ? ;
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<subject_match_field> @<EntityReference> * ;
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<object_match_field> @<EntityReference> * ;

project/sqlschema/sssom_schema.sql

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@@ -75,6 +75,7 @@ CREATE TABLE mapping_set (
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object_source_version TEXT,
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mapping_provider TEXT,
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mapping_tool TEXT,
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mapping_tool_version TEXT,
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mapping_date DATE,
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subject_match_field TEXT,
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object_match_field TEXT,
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see_also TEXT,
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other TEXT,
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comment TEXT,
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PRIMARY KEY (mappings, mapping_set_id, mapping_set_version, mapping_set_source, mapping_set_title, mapping_set_description, creator_id, creator_label, license, subject_type, subject_source, subject_source_version, object_type, object_source, object_source_version, mapping_provider, mapping_tool, mapping_date, subject_match_field, object_match_field, subject_preprocessing, object_preprocessing, see_also, other, comment)
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PRIMARY KEY (mappings, mapping_set_id, mapping_set_version, mapping_set_source, mapping_set_title, mapping_set_description, creator_id, creator_label, license, subject_type, subject_source, subject_source_version, object_type, object_source, object_source_version, mapping_provider, mapping_tool, mapping_tool_version, mapping_date, subject_match_field, object_match_field, subject_preprocessing, object_preprocessing, see_also, other, comment)
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);
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CREATE TABLE mapping_set_reference (

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