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Description
Bug report
25.2.0-edge now fails GitHub CICD with the error:
N E X T F L O W ~ version 25.02.0-edge
Launching `/home/runner/work/ear/ear/main.nf` [special_albattani] DSL2 - revision: 0b6016ece9
Downloading plugin [email protected]
A workflow named 'UTILS_NFSCHEMA_PLUGIN' is already defined or included in script: /home/runner/work/ear/ear/subworkflows/local/utils_nfcore_ear_pipeline/main.nf
Is is there... but only once, is it now part of Nextflow it self?
I can't see in the changelog where this issue would have arisen from, but happy to be wrong.
Expected behavior and actual behavior
Yesterday the actions were running fine, updates since, shouldn't have caused any error like this
sanger-tol/ear#26
Steps to reproduce the problem
You can see the issue here:
https://github.com/sanger-tol/ear/actions/runs/13923993657/job/38979195512
The pipeline uses nf-test, but that isn' t the cause.
Program output
(Copy and paste the output produced by the failing execution. Please highlight it as a code block. Whenever possible upload the .nextflow.log
file.)
Environment
- Nextflow version: 25.2.0-edge
- Java version: 17 - setup-nextflow@v2
- Operating system: linux - GitHub Runner
- Bash version: (use the command
$SHELL --version
)
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