From 8c5104c09bfe77039c5a49fe55e53df08102c42b Mon Sep 17 00:00:00 2001 From: Maxime Borry Date: Fri, 29 Nov 2024 10:19:14 +0000 Subject: [PATCH 1/2] feat: add wget retry wait time --- modules/local/sra_fastq_ftp/nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/local/sra_fastq_ftp/nextflow.config b/modules/local/sra_fastq_ftp/nextflow.config index 56e43959..172e93ed 100644 --- a/modules/local/sra_fastq_ftp/nextflow.config +++ b/modules/local/sra_fastq_ftp/nextflow.config @@ -1,6 +1,6 @@ process { withName: 'SRA_FASTQ_FTP' { - ext.args = '-t 5 -nv -c -T 60' + ext.args = '-t 5 -nv -w 5 --random-wait -c -T 60' publishDir = [ [ path: { "${params.outdir}/fastq" }, From ef399e854b888b2f73911f429902cc8bf4a0c0e3 Mon Sep 17 00:00:00 2001 From: Maxime Borry Date: Fri, 29 Nov 2024 10:27:11 +0000 Subject: [PATCH 2/2] doc: changelog update --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 8283f2ed..562d2c5e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -15,6 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [PR #320](https://github.com/nf-core/fetchngs/pull/320) - Update module multiqc_mappings_config and sratools/prefetch for TES compliance - [PR #320](https://github.com/nf-core/fetchngs/pull/320) - Refactor workflow tests - [PR #323](https://github.com/nf-core/fetchngs/pull/323) - Template update for nf-core/tools v3.0.2 +- [PR #325](https://github.com/nf-core/fetchngs/pull/325) - Add wget wait time for retries ### Software dependencies