From 29122cbee69d89729ab17b0fcfbda7a587198383 Mon Sep 17 00:00:00 2001
From: nf-core-bot <core@nf-co.re>
Date: Tue, 3 Jun 2025 11:02:35 +0000
Subject: [PATCH 01/58] Template update for nf-core/tools version 3.3.1

---
 .editorconfig                                 |  37 -----
 .github/CONTRIBUTING.md                       |   2 +-
 .github/actions/get-shards/action.yml         |  69 +++++++++
 .github/actions/nf-test/action.yml            | 113 ++++++++++++++
 .github/workflows/awsfulltest.yml             |   4 +-
 .github/workflows/awstest.yml                 |   2 +-
 .github/workflows/ci.yml                      |  88 -----------
 .github/workflows/clean-up.yml                |   2 +-
 .github/workflows/download_pipeline.yml       |  20 +--
 .../{fix-linting.yml => fix_linting.yml}      |   4 +-
 .github/workflows/linting.yml                 |  15 +-
 .github/workflows/linting_comment.yml         |   4 +-
 .github/workflows/nf-test.yml                 | 142 ++++++++++++++++++
 .github/workflows/release-announcements.yml   |   2 +-
 ...mment.yml => template-version-comment.yml} |   2 +-
 .nf-core.yml                                  |   5 +-
 .pre-commit-config.yaml                       |  26 +++-
 .prettierrc.yml                               |   5 +
 CHANGELOG.md                                  |   2 +-
 README.md                                     |   7 +-
 conf/base.config                              |   5 +-
 nextflow.config                               |  19 ++-
 nf-test.config                                |  24 +++
 ro-crate-metadata.json                        |  18 +--
 .../main.nf                                   |   1 -
 tests/.nftignore                              |  10 ++
 tests/default.nf.test                         |  35 +++++
 tests/nextflow.config                         |  12 ++
 28 files changed, 491 insertions(+), 184 deletions(-)
 delete mode 100644 .editorconfig
 create mode 100644 .github/actions/get-shards/action.yml
 create mode 100644 .github/actions/nf-test/action.yml
 delete mode 100644 .github/workflows/ci.yml
 rename .github/workflows/{fix-linting.yml => fix_linting.yml} (96%)
 create mode 100644 .github/workflows/nf-test.yml
 rename .github/workflows/{template_version_comment.yml => template-version-comment.yml} (95%)
 create mode 100644 nf-test.config
 create mode 100644 tests/.nftignore
 create mode 100644 tests/default.nf.test
 create mode 100644 tests/nextflow.config

diff --git a/.editorconfig b/.editorconfig
deleted file mode 100644
index 6d9b74cc..00000000
--- a/.editorconfig
+++ /dev/null
@@ -1,37 +0,0 @@
-root = true
-
-[*]
-charset = utf-8
-end_of_line = lf
-insert_final_newline = true
-trim_trailing_whitespace = true
-indent_size = 4
-indent_style = space
-
-[*.{md,yml,yaml,html,css,scss,js}]
-indent_size = 2
-
-# These files are edited and tested upstream in nf-core/modules
-[/modules/nf-core/**]
-charset = unset
-end_of_line = unset
-insert_final_newline = unset
-trim_trailing_whitespace = unset
-indent_style = unset
-[/subworkflows/nf-core/**]
-charset = unset
-end_of_line = unset
-insert_final_newline = unset
-trim_trailing_whitespace = unset
-indent_style = unset
-
-[/assets/email*]
-indent_size = unset
-
-# ignore python and markdown
-[*.{py,md}]
-indent_style = unset
-
-# ignore ro-crate metadata files
-[**/ro-crate-metadata.json]
-insert_final_newline = unset
diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md
index 130e3efd..6fe54a90 100644
--- a/.github/CONTRIBUTING.md
+++ b/.github/CONTRIBUTING.md
@@ -78,7 +78,7 @@ If you wish to contribute a new step, please use the following coding standards:
 5. Add any new parameters to `nextflow_schema.json` with help text (via the `nf-core pipelines schema build` tool).
 6. Add sanity checks and validation for all relevant parameters.
 7. Perform local tests to validate that the new code works as expected.
-8. If applicable, add a new test command in `.github/workflow/ci.yml`.
+8. If applicable, add a new test in the `tests` directory.
 9. Update MultiQC config `assets/multiqc_config.yml` so relevant suffixes, file name clean up and module plots are in the appropriate order. If applicable, add a [MultiQC](https://https://multiqc.info/) module.
 10. Add a description of the output files and if relevant any appropriate images from the MultiQC report to `docs/output.md`.
 
diff --git a/.github/actions/get-shards/action.yml b/.github/actions/get-shards/action.yml
new file mode 100644
index 00000000..34085279
--- /dev/null
+++ b/.github/actions/get-shards/action.yml
@@ -0,0 +1,69 @@
+name: "Get number of shards"
+description: "Get the number of nf-test shards for the current CI job"
+inputs:
+  max_shards:
+    description: "Maximum number of shards allowed"
+    required: true
+  paths:
+    description: "Component paths to test"
+    required: false
+  tags:
+    description: "Tags to pass as argument for nf-test --tag parameter"
+    required: false
+outputs:
+  shard:
+    description: "Array of shard numbers"
+    value: ${{ steps.shards.outputs.shard }}
+  total_shards:
+    description: "Total number of shards"
+    value: ${{ steps.shards.outputs.total_shards }}
+runs:
+  using: "composite"
+  steps:
+    - name: Install nf-test
+      uses: nf-core/setup-nf-test@v1
+      with:
+        version: ${{ env.NFT_VER }}
+    - name: Get number of shards
+      id: shards
+      shell: bash
+      run: |
+        # Run nf-test with dynamic parameter
+        nftest_output=$(nf-test test \
+          --profile +docker \
+          $(if [ -n "${{ inputs.tags }}" ]; then echo "--tag ${{ inputs.tags }}"; fi) \
+          --dry-run \
+          --ci \
+          --changed-since HEAD^) || {
+            echo "nf-test command failed with exit code $?"
+            echo "Full output: $nftest_output"
+            exit 1
+        }
+        echo "nf-test dry-run output: $nftest_output"
+
+        # Default values for shard and total_shards
+        shard="[]"
+        total_shards=0
+
+        # Check if there are related tests
+        if echo "$nftest_output" | grep -q 'No tests to execute'; then
+          echo "No related tests found."
+        else
+          # Extract the number of related tests
+          number_of_shards=$(echo "$nftest_output" | sed -n 's|.*Executed \([0-9]*\) tests.*|\1|p')
+          if [[ -n "$number_of_shards" && "$number_of_shards" -gt 0 ]]; then
+            shards_to_run=$(( $number_of_shards < ${{ inputs.max_shards }} ? $number_of_shards : ${{ inputs.max_shards }} ))
+            shard=$(seq 1 "$shards_to_run" | jq -R . | jq -c -s .)
+            total_shards="$shards_to_run"
+          else
+            echo "Unexpected output format. Falling back to default values."
+          fi
+        fi
+
+        # Write to GitHub Actions outputs
+        echo "shard=$shard" >> $GITHUB_OUTPUT
+        echo "total_shards=$total_shards" >> $GITHUB_OUTPUT
+
+        # Debugging output
+        echo "Final shard array: $shard"
+        echo "Total number of shards: $total_shards"
diff --git a/.github/actions/nf-test/action.yml b/.github/actions/nf-test/action.yml
new file mode 100644
index 00000000..243e7823
--- /dev/null
+++ b/.github/actions/nf-test/action.yml
@@ -0,0 +1,113 @@
+name: "nf-test Action"
+description: "Runs nf-test with common setup steps"
+inputs:
+  profile:
+    description: "Profile to use"
+    required: true
+  shard:
+    description: "Shard number for this CI job"
+    required: true
+  total_shards:
+    description: "Total number of test shards(NOT the total number of matrix jobs)"
+    required: true
+  paths:
+    description: "Test paths"
+    required: true
+  tags:
+    description: "Tags to pass as argument for nf-test --tag parameter"
+    required: false
+runs:
+  using: "composite"
+  steps:
+    - name: Setup Nextflow
+      uses: nf-core/setup-nextflow@v2
+      with:
+        version: "${{ env.NXF_VERSION }}"
+
+    - name: Set up Python
+      uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
+      with:
+        python-version: "3.13"
+
+    - name: Install nf-test
+      uses: nf-core/setup-nf-test@v1
+      with:
+        version: "${{ env.NFT_VER }}"
+        install-pdiff: true
+
+    - name: Setup apptainer
+      if: contains(inputs.profile, 'singularity')
+      uses: eWaterCycle/setup-apptainer@main
+
+    - name: Set up Singularity
+      if: contains(inputs.profile, 'singularity')
+      shell: bash
+      run: |
+        mkdir -p $NXF_SINGULARITY_CACHEDIR
+        mkdir -p $NXF_SINGULARITY_LIBRARYDIR
+
+    - name: Conda setup
+      if: contains(inputs.profile, 'conda')
+      uses: conda-incubator/setup-miniconda@505e6394dae86d6a5c7fbb6e3fb8938e3e863830 # v3
+      with:
+        auto-update-conda: true
+        conda-solver: libmamba
+        conda-remove-defaults: true
+
+      # TODO Skip failing conda tests and document their failures
+      # https://github.com/nf-core/modules/issues/7017
+    - name: Run nf-test
+      shell: bash
+      env:
+        NFT_DIFF: ${{ env.NFT_DIFF }}
+        NFT_DIFF_ARGS: ${{ env.NFT_DIFF_ARGS }}
+        NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
+      run: |
+        nf-test test \
+          --profile=+${{ inputs.profile }} \
+          $(if [ -n "${{ inputs.tags }}" ]; then echo "--tag ${{ inputs.tags }}"; fi) \
+          --ci \
+          --changed-since HEAD^ \
+          --verbose \
+          --tap=test.tap \
+          --shard ${{ inputs.shard }}/${{ inputs.total_shards }}
+
+          # Save the absolute path of the test.tap file to the output
+          echo "tap_file_path=$(realpath test.tap)" >> $GITHUB_OUTPUT
+
+    - name: Generate test summary
+      if: always()
+      shell: bash
+      run: |
+        # Add header if it doesn't exist (using a token file to track this)
+        if [ ! -f ".summary_header" ]; then
+          echo "# 🚀 nf-test results" >> $GITHUB_STEP_SUMMARY
+          echo "" >> $GITHUB_STEP_SUMMARY
+          echo "| Status | Test Name | Profile | Shard |" >> $GITHUB_STEP_SUMMARY
+          echo "|:------:|-----------|---------|-------|" >> $GITHUB_STEP_SUMMARY
+          touch .summary_header
+        fi
+
+        if [ -f test.tap ]; then
+          while IFS= read -r line; do
+            if [[ $line =~ ^ok ]]; then
+              test_name="${line#ok }"
+              # Remove the test number from the beginning
+              test_name="${test_name#* }"
+              echo "| ✅ | ${test_name} | ${{ inputs.profile }} | ${{ inputs.shard }}/${{ inputs.total_shards }} |" >> $GITHUB_STEP_SUMMARY
+            elif [[ $line =~ ^not\ ok ]]; then
+              test_name="${line#not ok }"
+              # Remove the test number from the beginning
+              test_name="${test_name#* }"
+              echo "| ❌ | ${test_name} | ${{ inputs.profile }} | ${{ inputs.shard }}/${{ inputs.total_shards }} |" >> $GITHUB_STEP_SUMMARY
+            fi
+          done < test.tap
+        else
+          echo "| ⚠️ | No test results found | ${{ inputs.profile }} | ${{ inputs.shard }}/${{ inputs.total_shards }} |" >> $GITHUB_STEP_SUMMARY
+        fi
+
+    - name: Clean up
+      if: always()
+      shell: bash
+      run: |
+        sudo rm -rf /home/ubuntu/tests/
diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml
index 7eca4d57..9e70ee33 100644
--- a/.github/workflows/awsfulltest.yml
+++ b/.github/workflows/awsfulltest.yml
@@ -14,7 +14,7 @@ jobs:
   run-platform:
     name: Run AWS full tests
     # run only if the PR is approved by at least 2 reviewers and against the master/main branch or manually triggered
-    if: github.repository == 'nf-core/multiplesequencealign' && github.event.review.state == 'approved' && (github.event.pull_request.base.ref == 'master' || github.event.pull_request.base.ref == 'main') || github.event_name == 'workflow_dispatch'
+    if: github.repository == 'nf-core/multiplesequencealign' && github.event.review.state == 'approved' && (github.event.pull_request.base.ref == 'master' || github.event.pull_request.base.ref == 'main') || github.event_name == 'workflow_dispatch' || github.event_name == 'release'
     runs-on: ubuntu-latest
     steps:
       - name: Set revision variable
@@ -40,7 +40,7 @@ jobs:
             }
           profiles: test_full
 
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
         with:
           name: Seqera Platform debug log file
           path: |
diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml
index f1cf60a5..8727692d 100644
--- a/.github/workflows/awstest.yml
+++ b/.github/workflows/awstest.yml
@@ -25,7 +25,7 @@ jobs:
             }
           profiles: test
 
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
         with:
           name: Seqera Platform debug log file
           path: |
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
deleted file mode 100644
index db16f2a0..00000000
--- a/.github/workflows/ci.yml
+++ /dev/null
@@ -1,88 +0,0 @@
-name: nf-core CI
-# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
-on:
-  push:
-    branches:
-      - dev
-  pull_request:
-  release:
-    types: [published]
-  workflow_dispatch:
-
-env:
-  NXF_ANSI_LOG: false
-  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
-  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
-
-concurrency:
-  group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
-  cancel-in-progress: true
-
-jobs:
-  test:
-    name: "Run pipeline with test data (${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }})"
-    # Only run on push if this is the nf-core dev branch (merged PRs)
-    if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/multiplesequencealign') }}"
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        NXF_VER:
-          - "24.04.2"
-          - "latest-everything"
-        profile:
-          - "conda"
-          - "docker"
-          - "singularity"
-        test_name:
-          - "test"
-        isMaster:
-          - ${{ github.base_ref == 'master' }}
-        # Exclude conda and singularity on dev
-        exclude:
-          - isMaster: false
-            profile: "conda"
-          - isMaster: false
-            profile: "singularity"
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
-        with:
-          fetch-depth: 0
-
-      - name: Set up Nextflow
-        uses: nf-core/setup-nextflow@v2
-        with:
-          version: "${{ matrix.NXF_VER }}"
-
-      - name: Set up Apptainer
-        if: matrix.profile == 'singularity'
-        uses: eWaterCycle/setup-apptainer@main
-
-      - name: Set up Singularity
-        if: matrix.profile == 'singularity'
-        run: |
-          mkdir -p $NXF_SINGULARITY_CACHEDIR
-          mkdir -p $NXF_SINGULARITY_LIBRARYDIR
-
-      - name: Set up Miniconda
-        if: matrix.profile == 'conda'
-        uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca # v3
-        with:
-          miniconda-version: "latest"
-          auto-update-conda: true
-          conda-solver: libmamba
-          channels: conda-forge,bioconda
-
-      - name: Set up Conda
-        if: matrix.profile == 'conda'
-        run: |
-          echo $(realpath $CONDA)/condabin >> $GITHUB_PATH
-          echo $(realpath python) >> $GITHUB_PATH
-
-      - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
-
-      - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
-        continue-on-error: ${{ matrix.NXF_VER == 'latest-everything' }}
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results
diff --git a/.github/workflows/clean-up.yml b/.github/workflows/clean-up.yml
index 0b6b1f27..ac030fd5 100644
--- a/.github/workflows/clean-up.yml
+++ b/.github/workflows/clean-up.yml
@@ -10,7 +10,7 @@ jobs:
       issues: write
       pull-requests: write
     steps:
-      - uses: actions/stale@28ca1036281a5e5922ead5184a1bbf96e5fc984e # v9
+      - uses: actions/stale@5bef64f19d7facfb25b37b414482c7164d639639 # v9
         with:
           stale-issue-message: "This issue has been tagged as awaiting-changes or awaiting-feedback by an nf-core contributor. Remove stale label or add a comment otherwise this issue will be closed in 20 days."
           stale-pr-message: "This PR has been tagged as awaiting-changes or awaiting-feedback by an nf-core contributor. Remove stale label or add a comment if it is still useful."
diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
index ab06316e..999bcc38 100644
--- a/.github/workflows/download_pipeline.yml
+++ b/.github/workflows/download_pipeline.yml
@@ -12,14 +12,6 @@ on:
         required: true
         default: "dev"
   pull_request:
-    types:
-      - opened
-      - edited
-      - synchronize
-    branches:
-      - main
-      - master
-  pull_request_target:
     branches:
       - main
       - master
@@ -52,9 +44,9 @@ jobs:
       - name: Disk space cleanup
         uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
 
-      - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
+      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
           architecture: "x64"
 
       - name: Setup Apptainer
@@ -120,6 +112,7 @@ jobs:
           echo "IMAGE_COUNT_AFTER=$image_count" >> "$GITHUB_OUTPUT"
 
       - name: Compare container image counts
+        id: count_comparison
         run: |
           if [ "${{ steps.count_initial.outputs.IMAGE_COUNT_INITIAL }}" -ne "${{ steps.count_afterwards.outputs.IMAGE_COUNT_AFTER }}" ]; then
             initial_count=${{ steps.count_initial.outputs.IMAGE_COUNT_INITIAL }}
@@ -132,3 +125,10 @@ jobs:
           else
             echo "The pipeline can be downloaded successfully!"
           fi
+
+      - name: Upload Nextflow logfile for debugging purposes
+        uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
+        with:
+          name: nextflow_logfile.txt
+          path: .nextflow.log*
+          include-hidden-files: true
diff --git a/.github/workflows/fix-linting.yml b/.github/workflows/fix_linting.yml
similarity index 96%
rename from .github/workflows/fix-linting.yml
rename to .github/workflows/fix_linting.yml
index 3838bc30..7bc6c02e 100644
--- a/.github/workflows/fix-linting.yml
+++ b/.github/workflows/fix_linting.yml
@@ -32,9 +32,9 @@ jobs:
           GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }}
 
       # Install and run pre-commit
-      - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
+      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: Install pre-commit
         run: pip install pre-commit
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
index dbd52d5a..f2d7d1dd 100644
--- a/.github/workflows/linting.yml
+++ b/.github/workflows/linting.yml
@@ -3,9 +3,6 @@ name: nf-core linting
 # It runs the `nf-core pipelines lint` and markdown lint tests to ensure
 # that the code meets the nf-core guidelines.
 on:
-  push:
-    branches:
-      - dev
   pull_request:
   release:
     types: [published]
@@ -17,9 +14,9 @@ jobs:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
 
       - name: Set up Python 3.12
-        uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
 
       - name: Install pre-commit
         run: pip install pre-commit
@@ -36,13 +33,13 @@ jobs:
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v2
 
-      - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5
+      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
-          python-version: "3.12"
+          python-version: "3.13"
           architecture: "x64"
 
       - name: read .nf-core.yml
-        uses: pietrobolcato/action-read-yaml@1.1.0
+        uses: pietrobolcato/action-read-yaml@9f13718d61111b69f30ab4ac683e67a56d254e1d # 1.1.0
         id: read_yml
         with:
           config: ${{ github.workspace }}/.nf-core.yml
@@ -74,7 +71,7 @@ jobs:
 
       - name: Upload linting log file artifact
         if: ${{ always() }}
-        uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
+        uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
         with:
           name: linting-logs
           path: |
diff --git a/.github/workflows/linting_comment.yml b/.github/workflows/linting_comment.yml
index 95b6b6af..7e8050fb 100644
--- a/.github/workflows/linting_comment.yml
+++ b/.github/workflows/linting_comment.yml
@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download lint results
-        uses: dawidd6/action-download-artifact@20319c5641d495c8a52e688b7dc5fada6c3a9fbc # v8
+        uses: dawidd6/action-download-artifact@4c1e823582f43b179e2cbb49c3eade4e41f992e2 # v10
         with:
           workflow: linting.yml
           workflow_conclusion: completed
@@ -21,7 +21,7 @@ jobs:
         run: echo "pr_number=$(cat linting-logs/PR_number.txt)" >> $GITHUB_OUTPUT
 
       - name: Post PR comment
-        uses: marocchino/sticky-pull-request-comment@331f8f5b4215f0445d3c07b4967662a32a2d3e31 # v2
+        uses: marocchino/sticky-pull-request-comment@52423e01640425a022ef5fd42c6fb5f633a02728 # v2
         with:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           number: ${{ steps.pr_number.outputs.pr_number }}
diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
new file mode 100644
index 00000000..f03aea0c
--- /dev/null
+++ b/.github/workflows/nf-test.yml
@@ -0,0 +1,142 @@
+name: Run nf-test
+on:
+  push:
+    paths-ignore:
+      - "docs/**"
+      - "**/meta.yml"
+      - "**/*.md"
+      - "**/*.png"
+      - "**/*.svg"
+  pull_request:
+    paths-ignore:
+      - "docs/**"
+      - "**/meta.yml"
+      - "**/*.md"
+      - "**/*.png"
+      - "**/*.svg"
+  release:
+    types: [published]
+  workflow_dispatch:
+
+# Cancel if a newer run is started
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+env:
+  GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  NFT_VER: "0.9.2"
+  NFT_WORKDIR: "~"
+  NXF_ANSI_LOG: false
+  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
+  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
+
+jobs:
+  nf-test-changes:
+    name: nf-test-changes
+    runs-on: # use self-hosted runners
+      - runs-on=$-nf-test-changes
+      - runner=4cpu-linux-x64
+    outputs:
+      shard: ${{ steps.set-shards.outputs.shard }}
+      total_shards: ${{ steps.set-shards.outputs.total_shards }}
+    steps:
+      - name: Clean Workspace # Purge the workspace in case it's running on a self-hosted runner
+        run: |
+          ls -la ./
+          rm -rf ./* || true
+          rm -rf ./.??* || true
+          ls -la ./
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+        with:
+          fetch-depth: 0
+
+      - name: get number of shards
+        id: set-shards
+        uses: ./.github/actions/get-shards
+        env:
+          NFT_VER: ${{ env.NFT_VER }}
+        with:
+          max_shards: 7
+
+      - name: debug
+        run: |
+          echo ${{ steps.set-shards.outputs.shard }}
+          echo ${{ steps.set-shards.outputs.total_shards }}
+
+  nf-test:
+    name: "${{ matrix.profile }} | ${{ matrix.NXF_VER }} | ${{ matrix.shard }}/${{ needs.nf-test-changes.outputs.total_shards }}"
+    needs: [nf-test-changes]
+    if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
+    runs-on: # use self-hosted runners
+      - runs-on=$-nf-test
+      - runner=4cpu-linux-x64
+    strategy:
+      fail-fast: false
+      matrix:
+        shard: ${{ fromJson(needs.nf-test-changes.outputs.shard) }}
+        profile: [conda, docker, singularity]
+        isMain:
+          - ${{ github.base_ref == 'master' || github.base_ref == 'main' }}
+        # Exclude conda and singularity on dev
+        exclude:
+          - isMain: false
+            profile: "conda"
+          - isMain: false
+            profile: "singularity"
+        NXF_VER:
+          - "24.04.2"
+          - "latest-everything"
+    env:
+      NXF_ANSI_LOG: false
+      TOTAL_SHARDS: ${{ needs.nf-test-changes.outputs.total_shards }}
+
+    steps:
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+        with:
+          fetch-depth: 0
+
+      - name: Run nf-test
+        uses: ./.github/actions/nf-test
+        env:
+          NFT_DIFF: ${{ env.NFT_DIFF }}
+          NFT_DIFF_ARGS: ${{ env.NFT_DIFF_ARGS }}
+          NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
+        with:
+          profile: ${{ matrix.profile }}
+          shard: ${{ matrix.shard }}
+          total_shards: ${{ env.TOTAL_SHARDS }}
+  confirm-pass:
+    needs: [nf-test]
+    if: always()
+    runs-on: # use self-hosted runners
+      - runs-on=$-confirm-pass
+      - runner=2cpu-linux-x64
+    steps:
+      - name: One or more tests failed
+        if: ${{ contains(needs.*.result, 'failure') }}
+        run: exit 1
+
+      - name: One or more tests cancelled
+        if: ${{ contains(needs.*.result, 'cancelled') }}
+        run: exit 1
+
+      - name: All tests ok
+        if: ${{ contains(needs.*.result, 'success') }}
+        run: exit 0
+
+      - name: debug-print
+        if: always()
+        run: |
+          echo "::group::DEBUG: `needs` Contents"
+          echo "DEBUG: toJSON(needs) = ${{ toJSON(needs) }}"
+          echo "DEBUG: toJSON(needs.*.result) = ${{ toJSON(needs.*.result) }}"
+          echo "::endgroup::"
+
+      - name: Clean Workspace # Purge the workspace in case it's running on a self-hosted runner
+        if: always()
+        run: |
+          ls -la ./
+          rm -rf ./* || true
+          rm -rf ./.??* || true
+          ls -la ./
diff --git a/.github/workflows/release-announcements.yml b/.github/workflows/release-announcements.yml
index 76a9e67e..4abaf484 100644
--- a/.github/workflows/release-announcements.yml
+++ b/.github/workflows/release-announcements.yml
@@ -30,7 +30,7 @@ jobs:
   bsky-post:
     runs-on: ubuntu-latest
     steps:
-      - uses: zentered/bluesky-post-action@80dbe0a7697de18c15ad22f4619919ceb5ccf597 # v0.1.0
+      - uses: zentered/bluesky-post-action@4aa83560bb3eac05dbad1e5f221ee339118abdd2 # v0.2.0
         with:
           post: |
             Pipeline release! ${{ github.repository }} v${{ github.event.release.tag_name }} - ${{ github.event.release.name }}!
diff --git a/.github/workflows/template_version_comment.yml b/.github/workflows/template-version-comment.yml
similarity index 95%
rename from .github/workflows/template_version_comment.yml
rename to .github/workflows/template-version-comment.yml
index 537529bc..beb5c77f 100644
--- a/.github/workflows/template_version_comment.yml
+++ b/.github/workflows/template-version-comment.yml
@@ -14,7 +14,7 @@ jobs:
           ref: ${{ github.event.pull_request.head.sha }}
 
       - name: Read template version from .nf-core.yml
-        uses: nichmor/minimal-read-yaml@v0.0.2
+        uses: nichmor/minimal-read-yaml@1f7205277e25e156e1f63815781db80a6d490b8f # v0.0.2
         id: read_yml
         with:
           config: ${{ github.workspace }}/.nf-core.yml
diff --git a/.nf-core.yml b/.nf-core.yml
index 6cf08b00..eb0bf277 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -1,12 +1,11 @@
 lint:
-  actions_ci: false
   files_exist:
     - conf/igenomes.config
     - conf/igenomes_ignored.config
   files_unchanged:
     - .github/CONTRIBUTING.md
   multiqc_config: false
-nf_core_version: 3.2.1
+nf_core_version: 3.3.1
 repository_type: pipeline
 template:
   author: Luisa Santus, Jose Espinosa-Carrasco
@@ -16,4 +15,4 @@ template:
   name: multiplesequencealign
   org: nf-core
   outdir: .
-  version: 1.1.1dev
+  version: 1.2.0dev
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 1dec8650..9d0b248d 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -4,10 +4,24 @@ repos:
     hooks:
       - id: prettier
         additional_dependencies:
-          - prettier@3.2.5
-
-  - repo: https://github.com/editorconfig-checker/editorconfig-checker.python
-    rev: "3.1.2"
+          - prettier@3.5.0
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
     hooks:
-      - id: editorconfig-checker
-        alias: ec
+      - id: trailing-whitespace
+        args: [--markdown-linebreak-ext=md]
+        exclude: |
+          (?x)^(
+              .*ro-crate-metadata.json$|
+              modules/nf-core/.*|
+              subworkflows/nf-core/.*|
+              .*\.snap$
+          )$
+      - id: end-of-file-fixer
+        exclude: |
+          (?x)^(
+              .*ro-crate-metadata.json$|
+              modules/nf-core/.*|
+              subworkflows/nf-core/.*|
+              .*\.snap$
+          )$
diff --git a/.prettierrc.yml b/.prettierrc.yml
index c81f9a76..07dbd8bb 100644
--- a/.prettierrc.yml
+++ b/.prettierrc.yml
@@ -1 +1,6 @@
 printWidth: 120
+tabWidth: 4
+overrides:
+  - files: "*.{md,yml,yaml,html,css,scss,js,cff}"
+    options:
+      tabWidth: 2
diff --git a/CHANGELOG.md b/CHANGELOG.md
index df31626d..59e53809 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.1.1dev - [date]
+## v1.2.0dev - [date]
 
 Initial release of nf-core/multiplesequencealign, created with the [nf-core](https://nf-co.re/) template.
 
diff --git a/README.md b/README.md
index 8cba569d..9c3b7592 100644
--- a/README.md
+++ b/README.md
@@ -9,13 +9,14 @@
 [![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
-[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A524.04.2-23aa62.svg)](https://www.nextflow.io/)
+[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.04.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
+[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.1)
 [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
 [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
 [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
 [![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)
 
-[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Twitter](http://img.shields.io/badge/twitter-%40nf__core-1DA1F2?labelColor=000000&logo=twitter)](https://twitter.com/nf_core)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)
+[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)
 
 ## Introduction
 
@@ -28,7 +29,7 @@
 -->
 
 <!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core
-     workflows use the "tube map" design for that. See https://nf-co.re/docs/contributing/design_guidelines#examples for examples.   -->
+     workflows use the "tube map" design for that. See https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams#examples for examples.   -->
 <!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))
 
 ## Usage
diff --git a/conf/base.config b/conf/base.config
index f1f1d2db..ce14eaec 100644
--- a/conf/base.config
+++ b/conf/base.config
@@ -15,7 +15,7 @@ process {
     memory = { 6.GB   * task.attempt }
     time   = { 4.h    * task.attempt }
 
-    errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }
+    errorStrategy = { task.exitStatus in ((130..145) + 104 + 175) ? 'retry' : 'finish' }
     maxRetries    = 1
     maxErrors     = '-1'
 
@@ -59,4 +59,7 @@ process {
         errorStrategy = 'retry'
         maxRetries    = 2
     }
+    withLabel: process_gpu {
+        ext.use_gpu = { workflow.profile.contains('gpu') }
+    }
 }
diff --git a/nextflow.config b/nextflow.config
index 5cabc1e7..f63cd0b4 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -160,16 +160,25 @@ profiles {
             ]
         }
     }
+    gpu {
+        docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
+        apptainer.runOptions    = '--nv'
+        singularity.runOptions  = '--nv'
+    }
     test      { includeConfig 'conf/test.config'      }
     test_full { includeConfig 'conf/test_full.config' }
 }
 
-// Load nf-core custom profiles from different Institutions
-includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
+// Load nf-core custom profiles from different institutions
+
+// If params.custom_config_base is set AND either the NXF_OFFLINE environment variable is not set or params.custom_config_base is a local path, the nfcore_custom.config file from the specified base path is included.
+// Load nf-core/multiplesequencealign custom profiles from different institutions.
+includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
+
 
 // Load nf-core/multiplesequencealign custom profiles from different institutions.
 // TODO nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
-// includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/multiplesequencealign.config" : "/dev/null"
+// includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/pipeline/multiplesequencealign.config" : "/dev/null"
 
 // Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
 // Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled
@@ -251,13 +260,13 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'master'
     nextflowVersion = '!>=24.04.2'
-    version         = '1.1.1dev'
+    version         = '1.2.0dev'
     doi             = ''
 }
 
 // Nextflow plugins
 plugins {
-    id 'nf-schema@2.2.0' // Validation of pipeline parameters and creation of an input channel from a sample sheet
+    id 'nf-schema@2.3.0' // Validation of pipeline parameters and creation of an input channel from a sample sheet
 }
 
 validation {
diff --git a/nf-test.config b/nf-test.config
new file mode 100644
index 00000000..889df760
--- /dev/null
+++ b/nf-test.config
@@ -0,0 +1,24 @@
+config {
+    // location for all nf-test tests
+    testsDir "."
+
+    // nf-test directory including temporary files for each test
+    workDir System.getenv("NFT_WORKDIR") ?: ".nf-test"
+
+    // location of an optional nextflow.config file specific for executing tests
+    configFile "tests/nextflow.config"
+
+    // ignore tests coming from the nf-core/modules repo
+    ignore 'modules/nf-core/**/*', 'subworkflows/nf-core/**/*'
+
+    // run all test with defined profile(s) from the main nextflow.config
+    profile "test"
+
+    // list of filenames or patterns that should be trigger a full test run
+    triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore'
+
+    // load the necessary plugins
+    plugins {
+        load "nft-utils@0.0.3"
+    }
+}
diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
index 83fd62c3..e6273a39 100644
--- a/ro-crate-metadata.json
+++ b/ro-crate-metadata.json
@@ -22,8 +22,8 @@
             "@id": "./",
             "@type": "Dataset",
             "creativeWorkStatus": "InProgress",
-            "datePublished": "2025-04-30T12:26:53+00:00",
-            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A524.04.2-23aa62.svg)](https://www.nextflow.io/)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Twitter](http://img.shields.io/badge/twitter-%40nf__core-1DA1F2?labelColor=000000&logo=twitter)](https://twitter.com/nf_core)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/multiplesequencealign** is a bioinformatics pipeline that ...\n\n<!-- TODO nf-core:\n   Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the\n   major pipeline sections and the types of output it produces. You're giving an overview to someone new\n   to nf-core here, in 15-20 seconds. For an example, see https://github.com/nf-core/rnaseq/blob/master/README.md#introduction\n-->\n\n<!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core\n     workflows use the \"tube map\" design for that. See https://nf-co.re/docs/contributing/design_guidelines#examples for examples.   -->\n<!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n<!-- TODO nf-core: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.\n     Explain what rows and columns represent. For instance (please edit as appropriate):\n\nFirst, prepare a samplesheet with your input data that looks as follows:\n\n`samplesheet.csv`:\n\n```csv\nsample,fastq_1,fastq_2\nCONTROL_REP1,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz\n```\n\nEach row represents a fastq file (single-end) or a pair of fastq files (paired end).\n\n-->\n\nNow, you can run the pipeline using:\n\n<!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile <docker/singularity/.../institute> \\\n   --input samplesheet.csv \\\n   --outdir <OUTDIR>\n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus, Jose Espinosa-Carrasco.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n<!-- TODO nf-core: If applicable, make list of people who have also contributed -->\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->\n<!-- If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->\n\n<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
+            "datePublished": "2025-06-03T11:02:30+00:00",
+            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.04.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.1)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/multiplesequencealign** is a bioinformatics pipeline that ...\n\n<!-- TODO nf-core:\n   Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the\n   major pipeline sections and the types of output it produces. You're giving an overview to someone new\n   to nf-core here, in 15-20 seconds. For an example, see https://github.com/nf-core/rnaseq/blob/master/README.md#introduction\n-->\n\n<!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core\n     workflows use the \"tube map\" design for that. See https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams#examples for examples.   -->\n<!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n<!-- TODO nf-core: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.\n     Explain what rows and columns represent. For instance (please edit as appropriate):\n\nFirst, prepare a samplesheet with your input data that looks as follows:\n\n`samplesheet.csv`:\n\n```csv\nsample,fastq_1,fastq_2\nCONTROL_REP1,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz\n```\n\nEach row represents a fastq file (single-end) or a pair of fastq files (paired end).\n\n-->\n\nNow, you can run the pipeline using:\n\n<!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile <docker/singularity/.../institute> \\\n   --input samplesheet.csv \\\n   --outdir <OUTDIR>\n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus, Jose Espinosa-Carrasco.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n<!-- TODO nf-core: If applicable, make list of people who have also contributed -->\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->\n<!-- If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->\n\n<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
             "hasPart": [
                 {
                     "@id": "main.nf"
@@ -99,7 +99,7 @@
             },
             "mentions": [
                 {
-                    "@id": "#72839115-07c4-48b5-9805-cdd03ac6044f"
+                    "@id": "#8c7996a8-69d8-4e0f-92e3-66901ad624c3"
                 }
             ],
             "name": "nf-core/multiplesequencealign"
@@ -123,7 +123,7 @@
             "@id": "main.nf",
             "@type": ["File", "SoftwareSourceCode", "ComputationalWorkflow"],
             "dateCreated": "",
-            "dateModified": "2025-04-30T12:26:53Z",
+            "dateModified": "2025-06-03T11:02:30Z",
             "dct:conformsTo": "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE/",
             "keywords": ["nf-core", "nextflow"],
             "license": ["MIT"],
@@ -135,7 +135,7 @@
                 "@id": "https://nf-co.re/"
             },
             "url": ["https://github.com/nf-core/multiplesequencealign", "https://nf-co.re/multiplesequencealign/dev/"],
-            "version": ["1.1.1dev"]
+            "version": ["1.2.0dev"]
         },
         {
             "@id": "https://w3id.org/workflowhub/workflow-ro-crate#nextflow",
@@ -150,11 +150,11 @@
             "version": "!>=24.04.2"
         },
         {
-            "@id": "#72839115-07c4-48b5-9805-cdd03ac6044f",
+            "@id": "#8c7996a8-69d8-4e0f-92e3-66901ad624c3",
             "@type": "TestSuite",
             "instance": [
                 {
-                    "@id": "#93b49396-6b8d-4bf4-9d99-b41e91a1619a"
+                    "@id": "#143914d1-4245-4211-bc59-e70ba93bb711"
                 }
             ],
             "mainEntity": {
@@ -163,10 +163,10 @@
             "name": "Test suite for nf-core/multiplesequencealign"
         },
         {
-            "@id": "#93b49396-6b8d-4bf4-9d99-b41e91a1619a",
+            "@id": "#143914d1-4245-4211-bc59-e70ba93bb711",
             "@type": "TestInstance",
             "name": "GitHub Actions workflow for testing nf-core/multiplesequencealign",
-            "resource": "repos/nf-core/multiplesequencealign/actions/workflows/ci.yml",
+            "resource": "repos/nf-core/multiplesequencealign/actions/workflows/nf-test.yml",
             "runsOn": {
                 "@id": "https://w3id.org/ro/terms/test#GithubService"
             },
diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index bdcf46ab..2a93f2b1 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -261,4 +261,3 @@ def methodsDescriptionText(mqc_methods_yaml) {
 
     return description_html.toString()
 }
-
diff --git a/tests/.nftignore b/tests/.nftignore
new file mode 100644
index 00000000..c10bc1f1
--- /dev/null
+++ b/tests/.nftignore
@@ -0,0 +1,10 @@
+.DS_Store
+multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt
+multiqc/multiqc_data/multiqc.log
+multiqc/multiqc_data/multiqc_data.json
+multiqc/multiqc_data/multiqc_sources.txt
+multiqc/multiqc_data/multiqc_software_versions.txt
+multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
+multiqc/multiqc_report.html
+fastqc/*_fastqc.{html,zip}
+pipeline_info/*.{html,json,txt,yml}
diff --git a/tests/default.nf.test b/tests/default.nf.test
new file mode 100644
index 00000000..ecda5b01
--- /dev/null
+++ b/tests/default.nf.test
@@ -0,0 +1,35 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+
+    test("-profile test") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            assertAll(
+                { assert workflow.success},
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/nextflow.config b/tests/nextflow.config
new file mode 100644
index 00000000..8034c8f0
--- /dev/null
+++ b/tests/nextflow.config
@@ -0,0 +1,12 @@
+/*
+========================================================================================
+    Nextflow config file for running nf-test tests
+========================================================================================
+*/
+
+// TODO nf-core: Specify any additional parameters here
+// Or any resources requirements
+params.modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
+params.pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
+
+aws.client.anonymous = true // fixes S3 access issues on self-hosted runners

From 65939474c5e061c3f3b090ec9b480ac3dba48f81 Mon Sep 17 00:00:00 2001
From: nf-core-bot <core@nf-co.re>
Date: Tue, 8 Jul 2025 11:38:33 +0000
Subject: [PATCH 02/58] Template update for nf-core/tools version 3.3.2

---
 .github/actions/nf-test/action.yml            |   4 -
 .github/workflows/linting.yml                 |   2 +-
 .github/workflows/linting_comment.yml         |   2 +-
 .github/workflows/nf-test.yml                 |  45 +++----
 .github/workflows/release-announcements.yml   |   2 +-
 .nf-core.yml                                  |   2 +-
 .pre-commit-config.yaml                       |   2 +-
 README.md                                     |   6 +-
 assets/schema_input.json                      |   4 +-
 conf/base.config                              |   1 +
 modules.json                                  |   4 +-
 modules/nf-core/fastqc/environment.yml        |   2 +
 modules/nf-core/fastqc/main.nf                |   2 +-
 modules/nf-core/fastqc/meta.yml               |  23 ++--
 modules/nf-core/multiqc/environment.yml       |   4 +-
 modules/nf-core/multiqc/main.nf               |   4 +-
 modules/nf-core/multiqc/meta.yml              | 110 ++++++++++--------
 .../nf-core/multiqc/tests/main.nf.test.snap   |  18 +--
 nextflow.config                               |   5 +-
 nf-test.config                                |   2 +-
 ro-crate-metadata.json                        |  16 +--
 .../tests/nextflow.config                     |   2 +-
 tests/.nftignore                              |   1 +
 tests/nextflow.config                         |   6 +-
 24 files changed, 146 insertions(+), 123 deletions(-)

diff --git a/.github/actions/nf-test/action.yml b/.github/actions/nf-test/action.yml
index 243e7823..bf44d961 100644
--- a/.github/actions/nf-test/action.yml
+++ b/.github/actions/nf-test/action.yml
@@ -54,13 +54,9 @@ runs:
         conda-solver: libmamba
         conda-remove-defaults: true
 
-      # TODO Skip failing conda tests and document their failures
-      # https://github.com/nf-core/modules/issues/7017
     - name: Run nf-test
       shell: bash
       env:
-        NFT_DIFF: ${{ env.NFT_DIFF }}
-        NFT_DIFF_ARGS: ${{ env.NFT_DIFF_ARGS }}
         NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
       run: |
         nf-test test \
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
index f2d7d1dd..8b0f88c3 100644
--- a/.github/workflows/linting.yml
+++ b/.github/workflows/linting.yml
@@ -13,7 +13,7 @@ jobs:
     steps:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
 
-      - name: Set up Python 3.12
+      - name: Set up Python 3.13
         uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
         with:
           python-version: "3.13"
diff --git a/.github/workflows/linting_comment.yml b/.github/workflows/linting_comment.yml
index 7e8050fb..d43797d9 100644
--- a/.github/workflows/linting_comment.yml
+++ b/.github/workflows/linting_comment.yml
@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Download lint results
-        uses: dawidd6/action-download-artifact@4c1e823582f43b179e2cbb49c3eade4e41f992e2 # v10
+        uses: dawidd6/action-download-artifact@ac66b43f0e6a346234dd65d4d0c8fbb31cb316e5 # v11
         with:
           workflow: linting.yml
           workflow_conclusion: completed
diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index f03aea0c..e7b58449 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -1,12 +1,5 @@
 name: Run nf-test
 on:
-  push:
-    paths-ignore:
-      - "docs/**"
-      - "**/meta.yml"
-      - "**/*.md"
-      - "**/*.png"
-      - "**/*.svg"
   pull_request:
     paths-ignore:
       - "docs/**"
@@ -35,7 +28,7 @@ jobs:
   nf-test-changes:
     name: nf-test-changes
     runs-on: # use self-hosted runners
-      - runs-on=$-nf-test-changes
+      - runs-on=${{ github.run_id }}-nf-test-changes
       - runner=4cpu-linux-x64
     outputs:
       shard: ${{ steps.set-shards.outputs.shard }}
@@ -69,7 +62,7 @@ jobs:
     needs: [nf-test-changes]
     if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
     runs-on: # use self-hosted runners
-      - runs-on=$-nf-test
+      - runs-on=${{ github.run_id }}-nf-test
       - runner=4cpu-linux-x64
     strategy:
       fail-fast: false
@@ -85,7 +78,7 @@ jobs:
           - isMain: false
             profile: "singularity"
         NXF_VER:
-          - "24.04.2"
+          - "24.10.5"
           - "latest-everything"
     env:
       NXF_ANSI_LOG: false
@@ -97,23 +90,39 @@ jobs:
           fetch-depth: 0
 
       - name: Run nf-test
+        id: run_nf_test
         uses: ./.github/actions/nf-test
+        continue-on-error: ${{ matrix.NXF_VER == 'latest-everything' }}
         env:
-          NFT_DIFF: ${{ env.NFT_DIFF }}
-          NFT_DIFF_ARGS: ${{ env.NFT_DIFF_ARGS }}
           NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
         with:
           profile: ${{ matrix.profile }}
           shard: ${{ matrix.shard }}
           total_shards: ${{ env.TOTAL_SHARDS }}
+
+      - name: Report test status
+        if: ${{ always() }}
+        run: |
+          if [[ "${{ steps.run_nf_test.outcome }}" == "failure" ]]; then
+            echo "::error::Test with ${{ matrix.NXF_VER }} failed"
+            # Add to workflow summary
+            echo "## ❌ Test failed: ${{ matrix.profile }} | ${{ matrix.NXF_VER }} | Shard ${{ matrix.shard }}/${{ env.TOTAL_SHARDS }}" >> $GITHUB_STEP_SUMMARY
+            if [[ "${{ matrix.NXF_VER }}" == "latest-everything" ]]; then
+              echo "::warning::Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing."
+            fi
+            if [[ "${{ matrix.NXF_VER }}" != "latest-everything" ]]; then
+              exit 1
+            fi
+          fi
+
   confirm-pass:
     needs: [nf-test]
     if: always()
     runs-on: # use self-hosted runners
-      - runs-on=$-confirm-pass
+      - runs-on=${{ github.run_id }}-confirm-pass
       - runner=2cpu-linux-x64
     steps:
-      - name: One or more tests failed
+      - name: One or more tests failed (excluding latest-everything)
         if: ${{ contains(needs.*.result, 'failure') }}
         run: exit 1
 
@@ -132,11 +141,3 @@ jobs:
           echo "DEBUG: toJSON(needs) = ${{ toJSON(needs) }}"
           echo "DEBUG: toJSON(needs.*.result) = ${{ toJSON(needs.*.result) }}"
           echo "::endgroup::"
-
-      - name: Clean Workspace # Purge the workspace in case it's running on a self-hosted runner
-        if: always()
-        run: |
-          ls -la ./
-          rm -rf ./* || true
-          rm -rf ./.??* || true
-          ls -la ./
diff --git a/.github/workflows/release-announcements.yml b/.github/workflows/release-announcements.yml
index 4abaf484..0f732495 100644
--- a/.github/workflows/release-announcements.yml
+++ b/.github/workflows/release-announcements.yml
@@ -30,7 +30,7 @@ jobs:
   bsky-post:
     runs-on: ubuntu-latest
     steps:
-      - uses: zentered/bluesky-post-action@4aa83560bb3eac05dbad1e5f221ee339118abdd2 # v0.2.0
+      - uses: zentered/bluesky-post-action@6461056ea355ea43b977e149f7bf76aaa572e5e8 # v0.3.0
         with:
           post: |
             Pipeline release! ${{ github.repository }} v${{ github.event.release.tag_name }} - ${{ github.event.release.name }}!
diff --git a/.nf-core.yml b/.nf-core.yml
index eb0bf277..fd3b556b 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -5,7 +5,7 @@ lint:
   files_unchanged:
     - .github/CONTRIBUTING.md
   multiqc_config: false
-nf_core_version: 3.3.1
+nf_core_version: 3.3.2
 repository_type: pipeline
 template:
   author: Luisa Santus, Jose Espinosa-Carrasco
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 9d0b248d..bb41beec 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -4,7 +4,7 @@ repos:
     hooks:
       - id: prettier
         additional_dependencies:
-          - prettier@3.5.0
+          - prettier@3.6.2
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v5.0.0
     hooks:
diff --git a/README.md b/README.md
index 9c3b7592..1fef8df1 100644
--- a/README.md
+++ b/README.md
@@ -5,12 +5,12 @@
   </picture>
 </h1>
 
-[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml)
+[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml)
 [![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
-[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.04.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
-[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.1)
+[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.5-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
+[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.2)
 [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
 [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
 [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
diff --git a/assets/schema_input.json b/assets/schema_input.json
index 35fbe62c..2636c62f 100644
--- a/assets/schema_input.json
+++ b/assets/schema_input.json
@@ -17,14 +17,14 @@
                 "type": "string",
                 "format": "file-path",
                 "exists": true,
-                "pattern": "^\\S+\\.f(ast)?q\\.gz$",
+                "pattern": "^([\\S\\s]*\\/)?[^\\s\\/]+\\.f(ast)?q\\.gz$",
                 "errorMessage": "FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
             },
             "fastq_2": {
                 "type": "string",
                 "format": "file-path",
                 "exists": true,
-                "pattern": "^\\S+\\.f(ast)?q\\.gz$",
+                "pattern": "^([\\S\\s]*\\/)?[^\\s\\/]+\\.f(ast)?q\\.gz$",
                 "errorMessage": "FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
             }
         },
diff --git a/conf/base.config b/conf/base.config
index ce14eaec..8a43bf86 100644
--- a/conf/base.config
+++ b/conf/base.config
@@ -61,5 +61,6 @@ process {
     }
     withLabel: process_gpu {
         ext.use_gpu = { workflow.profile.contains('gpu') }
+        accelerator = { workflow.profile.contains('gpu') ? 1 : null }
     }
 }
diff --git a/modules.json b/modules.json
index db93d38f..ee541285 100644
--- a/modules.json
+++ b/modules.json
@@ -7,12 +7,12 @@
                 "nf-core": {
                     "fastqc": {
                         "branch": "master",
-                        "git_sha": "08108058ea36a63f141c25c4e75f9f872a5b2296",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "f0719ae309075ae4a291533883847c3f7c441dad",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     }
                 }
diff --git a/modules/nf-core/fastqc/environment.yml b/modules/nf-core/fastqc/environment.yml
index 691d4c76..f9f54ee9 100644
--- a/modules/nf-core/fastqc/environment.yml
+++ b/modules/nf-core/fastqc/environment.yml
@@ -1,3 +1,5 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
diff --git a/modules/nf-core/fastqc/main.nf b/modules/nf-core/fastqc/main.nf
index 033f4154..23e16634 100644
--- a/modules/nf-core/fastqc/main.nf
+++ b/modules/nf-core/fastqc/main.nf
@@ -29,7 +29,7 @@ process FASTQC {
     // The total amount of allocated RAM by FastQC is equal to the number of threads defined (--threads) time the amount of RAM defined (--memory)
     // https://github.com/s-andrews/FastQC/blob/1faeea0412093224d7f6a07f777fad60a5650795/fastqc#L211-L222
     // Dividing the task.memory by task.cpu allows to stick to requested amount of RAM in the label
-    def memory_in_mb = task.memory ? task.memory.toUnit('MB').toFloat() / task.cpus : null
+    def memory_in_mb = task.memory ? task.memory.toUnit('MB') / task.cpus : null
     // FastQC memory value allowed range (100 - 10000)
     def fastqc_memory = memory_in_mb > 10000 ? 10000 : (memory_in_mb < 100 ? 100 : memory_in_mb)
 
diff --git a/modules/nf-core/fastqc/meta.yml b/modules/nf-core/fastqc/meta.yml
index 2b2e62b8..c8d9d025 100644
--- a/modules/nf-core/fastqc/meta.yml
+++ b/modules/nf-core/fastqc/meta.yml
@@ -29,9 +29,10 @@ input:
         description: |
           List of input FastQ files of size 1 and 2 for single-end and paired-end data,
           respectively.
+        ontologies: []
 output:
-  - html:
-      - meta:
+  html:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -40,8 +41,9 @@ output:
           type: file
           description: FastQC report
           pattern: "*_{fastqc.html}"
-  - zip:
-      - meta:
+          ontologies: []
+  zip:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -50,11 +52,14 @@ output:
           type: file
           description: FastQC report archive
           pattern: "*_{fastqc.zip}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@drpatelh"
   - "@grst"
diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml
index a27122ce..812fc4c5 100644
--- a/modules/nf-core/multiqc/environment.yml
+++ b/modules/nf-core/multiqc/environment.yml
@@ -1,5 +1,7 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
 channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::multiqc=1.27
+  - bioconda::multiqc=1.29
diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
index 58d9313c..0ac3c369 100644
--- a/modules/nf-core/multiqc/main.nf
+++ b/modules/nf-core/multiqc/main.nf
@@ -3,8 +3,8 @@ process MULTIQC {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.27--pyhdfd78af_0' :
-        'biocontainers/multiqc:1.27--pyhdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/multiqc:1.29--pyhdfd78af_0' :
+        'biocontainers/multiqc:1.29--pyhdfd78af_0' }"
 
     input:
     path  multiqc_files, stageAs: "?/*"
diff --git a/modules/nf-core/multiqc/meta.yml b/modules/nf-core/multiqc/meta.yml
index b16c1879..ce30eb73 100644
--- a/modules/nf-core/multiqc/meta.yml
+++ b/modules/nf-core/multiqc/meta.yml
@@ -15,57 +15,71 @@ tools:
       licence: ["GPL-3.0-or-later"]
       identifier: biotools:multiqc
 input:
-  - - multiqc_files:
-        type: file
-        description: |
-          List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
-  - - multiqc_config:
-        type: file
-        description: Optional config yml for MultiQC
-        pattern: "*.{yml,yaml}"
-  - - extra_multiqc_config:
-        type: file
-        description: Second optional config yml for MultiQC. Will override common sections
-          in multiqc_config.
-        pattern: "*.{yml,yaml}"
-  - - multiqc_logo:
+  - multiqc_files:
+      type: file
+      description: |
+        List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
+      ontologies: []
+  - multiqc_config:
+      type: file
+      description: Optional config yml for MultiQC
+      pattern: "*.{yml,yaml}"
+      ontologies:
+        - edam: http://edamontology.org/format_3750 # YAML
+  - extra_multiqc_config:
+      type: file
+      description: Second optional config yml for MultiQC. Will override common sections
+        in multiqc_config.
+      pattern: "*.{yml,yaml}"
+      ontologies:
+        - edam: http://edamontology.org/format_3750 # YAML
+  - multiqc_logo:
+      type: file
+      description: Optional logo file for MultiQC
+      pattern: "*.{png}"
+      ontologies: []
+  - replace_names:
+      type: file
+      description: |
+        Optional two-column sample renaming file. First column a set of
+        patterns, second column a set of corresponding replacements. Passed via
+        MultiQC's `--replace-names` option.
+      pattern: "*.{tsv}"
+      ontologies:
+        - edam: http://edamontology.org/format_3475 # TSV
+  - sample_names:
+      type: file
+      description: |
+        Optional TSV file with headers, passed to the MultiQC --sample_names
+        argument.
+      pattern: "*.{tsv}"
+      ontologies:
+        - edam: http://edamontology.org/format_3475 # TSV
+output:
+  report:
+    - "*multiqc_report.html":
         type: file
-        description: Optional logo file for MultiQC
-        pattern: "*.{png}"
-  - - replace_names:
+        description: MultiQC report file
+        pattern: "multiqc_report.html"
+        ontologies: []
+  data:
+    - "*_data":
+        type: directory
+        description: MultiQC data dir
+        pattern: "multiqc_data"
+  plots:
+    - "*_plots":
         type: file
-        description: |
-          Optional two-column sample renaming file. First column a set of
-          patterns, second column a set of corresponding replacements. Passed via
-          MultiQC's `--replace-names` option.
-        pattern: "*.{tsv}"
-  - - sample_names:
+        description: Plots created by MultiQC
+        pattern: "*_data"
+        ontologies: []
+  versions:
+    - versions.yml:
         type: file
-        description: |
-          Optional TSV file with headers, passed to the MultiQC --sample_names
-          argument.
-        pattern: "*.{tsv}"
-output:
-  - report:
-      - "*multiqc_report.html":
-          type: file
-          description: MultiQC report file
-          pattern: "multiqc_report.html"
-  - data:
-      - "*_data":
-          type: directory
-          description: MultiQC data dir
-          pattern: "multiqc_data"
-  - plots:
-      - "*_plots":
-          type: file
-          description: Plots created by MultiQC
-          pattern: "*_data"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@abhi18av"
   - "@bunop"
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap
index 7b7c1322..88e90571 100644
--- a/modules/nf-core/multiqc/tests/main.nf.test.snap
+++ b/modules/nf-core/multiqc/tests/main.nf.test.snap
@@ -2,14 +2,14 @@
     "multiqc_versions_single": {
         "content": [
             [
-                "versions.yml:md5,8f3b8c1cec5388cf2708be948c9fa42f"
+                "versions.yml:md5,c1fe644a37468f6dae548d98bc72c2c1"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "24.10.4"
+            "nextflow": "25.04.2"
         },
-        "timestamp": "2025-01-27T09:29:57.631982377"
+        "timestamp": "2025-05-22T11:50:41.182332996"
     },
     "multiqc_stub": {
         "content": [
@@ -17,25 +17,25 @@
                 "multiqc_report.html",
                 "multiqc_data",
                 "multiqc_plots",
-                "versions.yml:md5,8f3b8c1cec5388cf2708be948c9fa42f"
+                "versions.yml:md5,c1fe644a37468f6dae548d98bc72c2c1"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "24.10.4"
+            "nextflow": "25.04.2"
         },
-        "timestamp": "2025-01-27T09:30:34.743726958"
+        "timestamp": "2025-05-22T11:51:22.448739369"
     },
     "multiqc_versions_config": {
         "content": [
             [
-                "versions.yml:md5,8f3b8c1cec5388cf2708be948c9fa42f"
+                "versions.yml:md5,c1fe644a37468f6dae548d98bc72c2c1"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "24.10.4"
+            "nextflow": "25.04.2"
         },
-        "timestamp": "2025-01-27T09:30:21.44383553"
+        "timestamp": "2025-05-22T11:51:06.198928424"
     }
 }
\ No newline at end of file
diff --git a/nextflow.config b/nextflow.config
index f63cd0b4..a7478897 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -235,7 +235,6 @@ dag {
 
 manifest {
     name            = 'nf-core/multiplesequencealign'
-    author          = """Luisa Santus, Jose Espinosa-Carrasco""" // The author field is deprecated from Nextflow version 24.10.0, use contributors instead
     contributors    = [
         // TODO nf-core: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0
         [
@@ -259,14 +258,14 @@ manifest {
     description     = """Pipeline to run and benchmark multiple sequence alignment tools."""
     mainScript      = 'main.nf'
     defaultBranch   = 'master'
-    nextflowVersion = '!>=24.04.2'
+    nextflowVersion = '!>=24.10.5'
     version         = '1.2.0dev'
     doi             = ''
 }
 
 // Nextflow plugins
 plugins {
-    id 'nf-schema@2.3.0' // Validation of pipeline parameters and creation of an input channel from a sample sheet
+    id 'nf-schema@2.4.2' // Validation of pipeline parameters and creation of an input channel from a sample sheet
 }
 
 validation {
diff --git a/nf-test.config b/nf-test.config
index 889df760..3a1fff59 100644
--- a/nf-test.config
+++ b/nf-test.config
@@ -9,7 +9,7 @@ config {
     configFile "tests/nextflow.config"
 
     // ignore tests coming from the nf-core/modules repo
-    ignore 'modules/nf-core/**/*', 'subworkflows/nf-core/**/*'
+    ignore 'modules/nf-core/**/tests/*', 'subworkflows/nf-core/**/tests/*'
 
     // run all test with defined profile(s) from the main nextflow.config
     profile "test"
diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
index e6273a39..116ad63a 100644
--- a/ro-crate-metadata.json
+++ b/ro-crate-metadata.json
@@ -22,8 +22,8 @@
             "@id": "./",
             "@type": "Dataset",
             "creativeWorkStatus": "InProgress",
-            "datePublished": "2025-06-03T11:02:30+00:00",
-            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/ci.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.04.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.1)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/multiplesequencealign** is a bioinformatics pipeline that ...\n\n<!-- TODO nf-core:\n   Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the\n   major pipeline sections and the types of output it produces. You're giving an overview to someone new\n   to nf-core here, in 15-20 seconds. For an example, see https://github.com/nf-core/rnaseq/blob/master/README.md#introduction\n-->\n\n<!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core\n     workflows use the \"tube map\" design for that. See https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams#examples for examples.   -->\n<!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n<!-- TODO nf-core: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.\n     Explain what rows and columns represent. For instance (please edit as appropriate):\n\nFirst, prepare a samplesheet with your input data that looks as follows:\n\n`samplesheet.csv`:\n\n```csv\nsample,fastq_1,fastq_2\nCONTROL_REP1,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz\n```\n\nEach row represents a fastq file (single-end) or a pair of fastq files (paired end).\n\n-->\n\nNow, you can run the pipeline using:\n\n<!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile <docker/singularity/.../institute> \\\n   --input samplesheet.csv \\\n   --outdir <OUTDIR>\n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus, Jose Espinosa-Carrasco.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n<!-- TODO nf-core: If applicable, make list of people who have also contributed -->\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->\n<!-- If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->\n\n<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
+            "datePublished": "2025-07-08T11:38:29+00:00",
+            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.5-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.2)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/multiplesequencealign** is a bioinformatics pipeline that ...\n\n<!-- TODO nf-core:\n   Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the\n   major pipeline sections and the types of output it produces. You're giving an overview to someone new\n   to nf-core here, in 15-20 seconds. For an example, see https://github.com/nf-core/rnaseq/blob/master/README.md#introduction\n-->\n\n<!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core\n     workflows use the \"tube map\" design for that. See https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams#examples for examples.   -->\n<!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n<!-- TODO nf-core: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.\n     Explain what rows and columns represent. For instance (please edit as appropriate):\n\nFirst, prepare a samplesheet with your input data that looks as follows:\n\n`samplesheet.csv`:\n\n```csv\nsample,fastq_1,fastq_2\nCONTROL_REP1,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz\n```\n\nEach row represents a fastq file (single-end) or a pair of fastq files (paired end).\n\n-->\n\nNow, you can run the pipeline using:\n\n<!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile <docker/singularity/.../institute> \\\n   --input samplesheet.csv \\\n   --outdir <OUTDIR>\n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus, Jose Espinosa-Carrasco.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n<!-- TODO nf-core: If applicable, make list of people who have also contributed -->\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->\n<!-- If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->\n\n<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
             "hasPart": [
                 {
                     "@id": "main.nf"
@@ -99,7 +99,7 @@
             },
             "mentions": [
                 {
-                    "@id": "#8c7996a8-69d8-4e0f-92e3-66901ad624c3"
+                    "@id": "#a8ef94cf-8c02-4748-b3b1-e05b80d475c3"
                 }
             ],
             "name": "nf-core/multiplesequencealign"
@@ -123,7 +123,7 @@
             "@id": "main.nf",
             "@type": ["File", "SoftwareSourceCode", "ComputationalWorkflow"],
             "dateCreated": "",
-            "dateModified": "2025-06-03T11:02:30Z",
+            "dateModified": "2025-07-08T11:38:29Z",
             "dct:conformsTo": "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE/",
             "keywords": ["nf-core", "nextflow"],
             "license": ["MIT"],
@@ -147,14 +147,14 @@
             "url": {
                 "@id": "https://www.nextflow.io/"
             },
-            "version": "!>=24.04.2"
+            "version": "!>=24.10.5"
         },
         {
-            "@id": "#8c7996a8-69d8-4e0f-92e3-66901ad624c3",
+            "@id": "#a8ef94cf-8c02-4748-b3b1-e05b80d475c3",
             "@type": "TestSuite",
             "instance": [
                 {
-                    "@id": "#143914d1-4245-4211-bc59-e70ba93bb711"
+                    "@id": "#76633d73-bd93-4c95-ac14-b9bf4004fc37"
                 }
             ],
             "mainEntity": {
@@ -163,7 +163,7 @@
             "name": "Test suite for nf-core/multiplesequencealign"
         },
         {
-            "@id": "#143914d1-4245-4211-bc59-e70ba93bb711",
+            "@id": "#76633d73-bd93-4c95-ac14-b9bf4004fc37",
             "@type": "TestInstance",
             "name": "GitHub Actions workflow for testing nf-core/multiplesequencealign",
             "resource": "repos/nf-core/multiplesequencealign/actions/workflows/nf-test.yml",
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config b/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config
index 0907ac58..09ef842a 100644
--- a/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config
+++ b/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config
@@ -1,5 +1,5 @@
 plugins {
-    id "nf-schema@2.1.0"
+    id "nf-schema@2.4.2"
 }
 
 validation {
diff --git a/tests/.nftignore b/tests/.nftignore
index c10bc1f1..158c83c5 100644
--- a/tests/.nftignore
+++ b/tests/.nftignore
@@ -1,5 +1,6 @@
 .DS_Store
 multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt
+multiqc/multiqc_data/BETA-multiqc.parquet
 multiqc/multiqc_data/multiqc.log
 multiqc/multiqc_data/multiqc_data.json
 multiqc/multiqc_data/multiqc_sources.txt
diff --git a/tests/nextflow.config b/tests/nextflow.config
index 8034c8f0..04553a81 100644
--- a/tests/nextflow.config
+++ b/tests/nextflow.config
@@ -6,7 +6,9 @@
 
 // TODO nf-core: Specify any additional parameters here
 // Or any resources requirements
-params.modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
-params.pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
+params {
+    modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
+    pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
+}
 
 aws.client.anonymous = true // fixes S3 access issues on self-hosted runners

From eeae6520acdcb2301ef1c6f7b6aa23a6674da64b Mon Sep 17 00:00:00 2001
From: nf-core-bot <core@nf-co.re>
Date: Thu, 16 Oct 2025 13:39:07 +0000
Subject: [PATCH 03/58] Template update for nf-core/tools version 3.4.1

---
 .devcontainer/devcontainer.json               | 28 ++++----
 .devcontainer/setup.sh                        | 13 ++++
 .github/actions/nf-test/action.yml            |  6 +-
 .github/workflows/awsfulltest.yml             | 12 ++--
 .github/workflows/awstest.yml                 | 12 ++--
 .github/workflows/clean-up.yml                |  2 +-
 .github/workflows/download_pipeline.yml       |  6 +-
 .github/workflows/fix_linting.yml             | 16 ++---
 .github/workflows/linting.yml                 | 14 ++--
 .github/workflows/linting_comment.yml         |  2 +-
 .github/workflows/nf-test.yml                 |  9 +--
 .github/workflows/release-announcements.yml   |  7 ++
 .../workflows/template-version-comment.yml    |  2 +-
 .gitpod.yml                                   | 10 ---
 .nf-core.yml                                  |  2 +-
 .pre-commit-config.yaml                       |  2 +-
 .prettierignore                               |  1 +
 README.md                                     |  5 +-
 docs/usage.md                                 |  2 +-
 main.nf                                       |  5 +-
 modules.json                                  |  8 +--
 modules/nf-core/multiqc/environment.yml       |  2 +-
 modules/nf-core/multiqc/main.nf               |  4 +-
 .../nf-core/multiqc/tests/main.nf.test.snap   | 18 +++---
 modules/nf-core/multiqc/tests/tags.yml        |  2 -
 nextflow.config                               | 64 ++++++-------------
 nextflow_schema.json                          | 12 ++++
 ro-crate-metadata.json                        | 16 ++---
 .../main.nf                                   | 31 ++++++++-
 .../utils_nextflow_pipeline/tests/tags.yml    |  2 -
 .../utils_nfcore_pipeline/tests/tags.yml      |  2 -
 .../nf-core/utils_nfschema_plugin/main.nf     | 40 ++++++++++--
 .../utils_nfschema_plugin/tests/main.nf.test  | 56 ++++++++++++++++
 .../tests/nextflow.config                     |  4 +-
 tests/.nftignore                              |  3 +-
 tests/default.nf.test                         |  2 -
 36 files changed, 267 insertions(+), 155 deletions(-)
 create mode 100755 .devcontainer/setup.sh
 delete mode 100644 .gitpod.yml
 delete mode 100644 modules/nf-core/multiqc/tests/tags.yml
 delete mode 100644 subworkflows/nf-core/utils_nextflow_pipeline/tests/tags.yml
 delete mode 100644 subworkflows/nf-core/utils_nfcore_pipeline/tests/tags.yml

diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
index b290e090..97c8c97f 100644
--- a/.devcontainer/devcontainer.json
+++ b/.devcontainer/devcontainer.json
@@ -1,20 +1,20 @@
 {
     "name": "nfcore",
-    "image": "nfcore/gitpod:latest",
-    "remoteUser": "gitpod",
-    "runArgs": ["--privileged"],
+    "image": "nfcore/devcontainer:latest",
 
-    // Configure tool-specific properties.
-    "customizations": {
-        // Configure properties specific to VS Code.
-        "vscode": {
-            // Set *default* container specific settings.json values on container create.
-            "settings": {
-                "python.defaultInterpreterPath": "/opt/conda/bin/python"
-            },
+    "remoteUser": "root",
+    "privileged": true,
 
-            // Add the IDs of extensions you want installed when the container is created.
-            "extensions": ["ms-python.python", "ms-python.vscode-pylance", "nf-core.nf-core-extensionpack"]
-        }
+    "remoteEnv": {
+        // Workspace path on the host for mounting with docker-outside-of-docker
+        "LOCAL_WORKSPACE_FOLDER": "${localWorkspaceFolder}"
+    },
+
+    "onCreateCommand": "./.devcontainer/setup.sh",
+
+    "hostRequirements": {
+        "cpus": 4,
+        "memory": "16gb",
+        "storage": "32gb"
     }
 }
diff --git a/.devcontainer/setup.sh b/.devcontainer/setup.sh
new file mode 100755
index 00000000..63df98d2
--- /dev/null
+++ b/.devcontainer/setup.sh
@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+# Customise the terminal command prompt
+echo "export PROMPT_DIRTRIM=2" >> $HOME/.bashrc
+echo "export PS1='\[\e[3;36m\]\w ->\[\e[0m\\] '" >> $HOME/.bashrc
+export PROMPT_DIRTRIM=2
+export PS1='\[\e[3;36m\]\w ->\[\e[0m\\] '
+
+# Update Nextflow
+nextflow self-update
+
+# Update welcome message
+echo "Welcome to the nf-core/multiplesequencealign devcontainer!" > /usr/local/etc/vscode-dev-containers/first-run-notice.txt
diff --git a/.github/actions/nf-test/action.yml b/.github/actions/nf-test/action.yml
index bf44d961..3b9724c7 100644
--- a/.github/actions/nf-test/action.yml
+++ b/.github/actions/nf-test/action.yml
@@ -25,9 +25,9 @@ runs:
         version: "${{ env.NXF_VERSION }}"
 
     - name: Set up Python
-      uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
+      uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6
       with:
-        python-version: "3.13"
+        python-version: "3.14"
 
     - name: Install nf-test
       uses: nf-core/setup-nf-test@v1
@@ -52,6 +52,8 @@ runs:
       with:
         auto-update-conda: true
         conda-solver: libmamba
+        channels: conda-forge
+        channel-priority: strict
         conda-remove-defaults: true
 
     - name: Run nf-test
diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml
index 9e70ee33..98f66efd 100644
--- a/.github/workflows/awsfulltest.yml
+++ b/.github/workflows/awsfulltest.yml
@@ -28,15 +28,15 @@ jobs:
         # Add full size test data (but still relatively small datasets for few samples)
         # on the `test_full.config` test runs with only one set of parameters
         with:
-          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
+          workspace_id: ${{ vars.TOWER_WORKSPACE_ID }}
           access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
-          compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
+          compute_env: ${{ vars.TOWER_COMPUTE_ENV }}
           revision: ${{ steps.revision.outputs.revision }}
-          workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/multiplesequencealign/work-${{ steps.revision.outputs.revision }}
+          workdir: s3://${{ vars.AWS_S3_BUCKET }}/work/multiplesequencealign/work-${{ steps.revision.outputs.revision }}
           parameters: |
             {
               "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/multiplesequencealign/results-${{ steps.revision.outputs.revision }}"
+              "outdir": "s3://${{ vars.AWS_S3_BUCKET }}/multiplesequencealign/results-${{ steps.revision.outputs.revision }}"
             }
           profiles: test_full
 
@@ -44,5 +44,5 @@ jobs:
         with:
           name: Seqera Platform debug log file
           path: |
-            seqera_platform_action_*.log
-            seqera_platform_action_*.json
+            tower_action_*.log
+            tower_action_*.json
diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml
index 8727692d..650782d8 100644
--- a/.github/workflows/awstest.yml
+++ b/.github/workflows/awstest.yml
@@ -14,14 +14,14 @@ jobs:
       - name: Launch workflow via Seqera Platform
         uses: seqeralabs/action-tower-launch@v2
         with:
-          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
+          workspace_id: ${{ vars.TOWER_WORKSPACE_ID }}
           access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
-          compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
+          compute_env: ${{ vars.TOWER_COMPUTE_ENV }}
           revision: ${{ github.sha }}
-          workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/multiplesequencealign/work-${{ github.sha }}
+          workdir: s3://${{ vars.AWS_S3_BUCKET }}/work/multiplesequencealign/work-${{ github.sha }}
           parameters: |
             {
-              "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/multiplesequencealign/results-test-${{ github.sha }}"
+              "outdir": "s3://${{ vars.AWS_S3_BUCKET }}/multiplesequencealign/results-test-${{ github.sha }}"
             }
           profiles: test
 
@@ -29,5 +29,5 @@ jobs:
         with:
           name: Seqera Platform debug log file
           path: |
-            seqera_platform_action_*.log
-            seqera_platform_action_*.json
+            tower_action_*.log
+            tower_action_*.json
diff --git a/.github/workflows/clean-up.yml b/.github/workflows/clean-up.yml
index ac030fd5..6adb0fff 100644
--- a/.github/workflows/clean-up.yml
+++ b/.github/workflows/clean-up.yml
@@ -10,7 +10,7 @@ jobs:
       issues: write
       pull-requests: write
     steps:
-      - uses: actions/stale@5bef64f19d7facfb25b37b414482c7164d639639 # v9
+      - uses: actions/stale@5f858e3efba33a5ca4407a664cc011ad407f2008 # v10
         with:
           stale-issue-message: "This issue has been tagged as awaiting-changes or awaiting-feedback by an nf-core contributor. Remove stale label or add a comment otherwise this issue will be closed in 20 days."
           stale-pr-message: "This PR has been tagged as awaiting-changes or awaiting-feedback by an nf-core contributor. Remove stale label or add a comment if it is still useful."
diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
index 999bcc38..6d94bcbf 100644
--- a/.github/workflows/download_pipeline.yml
+++ b/.github/workflows/download_pipeline.yml
@@ -44,9 +44,9 @@ jobs:
       - name: Disk space cleanup
         uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
 
-      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
+      - uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6
         with:
-          python-version: "3.13"
+          python-version: "3.14"
           architecture: "x64"
 
       - name: Setup Apptainer
@@ -57,7 +57,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install git+https://github.com/nf-core/tools.git@dev
+          pip install git+https://github.com/nf-core/tools.git
 
       - name: Make a cache directory for the container images
         run: |
diff --git a/.github/workflows/fix_linting.yml b/.github/workflows/fix_linting.yml
index 7bc6c02e..c076de58 100644
--- a/.github/workflows/fix_linting.yml
+++ b/.github/workflows/fix_linting.yml
@@ -13,13 +13,13 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       # Use the @nf-core-bot token to check out so we can push later
-      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+      - uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
         with:
           token: ${{ secrets.nf_core_bot_auth_token }}
 
       # indication that the linting is being fixed
       - name: React on comment
-        uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4
+        uses: peter-evans/create-or-update-comment@e8674b075228eee787fea43ef493e45ece1004c9 # v5
         with:
           comment-id: ${{ github.event.comment.id }}
           reactions: eyes
@@ -32,9 +32,9 @@ jobs:
           GITHUB_TOKEN: ${{ secrets.nf_core_bot_auth_token }}
 
       # Install and run pre-commit
-      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
+      - uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6
         with:
-          python-version: "3.13"
+          python-version: "3.14"
 
       - name: Install pre-commit
         run: pip install pre-commit
@@ -47,7 +47,7 @@ jobs:
       # indication that the linting has finished
       - name: react if linting finished succesfully
         if: steps.pre-commit.outcome == 'success'
-        uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4
+        uses: peter-evans/create-or-update-comment@e8674b075228eee787fea43ef493e45ece1004c9 # v5
         with:
           comment-id: ${{ github.event.comment.id }}
           reactions: "+1"
@@ -67,21 +67,21 @@ jobs:
       - name: react if linting errors were fixed
         id: react-if-fixed
         if: steps.commit-and-push.outcome == 'success'
-        uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4
+        uses: peter-evans/create-or-update-comment@e8674b075228eee787fea43ef493e45ece1004c9 # v5
         with:
           comment-id: ${{ github.event.comment.id }}
           reactions: hooray
 
       - name: react if linting errors were not fixed
         if: steps.commit-and-push.outcome == 'failure'
-        uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4
+        uses: peter-evans/create-or-update-comment@e8674b075228eee787fea43ef493e45ece1004c9 # v5
         with:
           comment-id: ${{ github.event.comment.id }}
           reactions: confused
 
       - name: react if linting errors were not fixed
         if: steps.commit-and-push.outcome  == 'failure'
-        uses: peter-evans/create-or-update-comment@71345be0265236311c031f5c7866368bd1eff043 # v4
+        uses: peter-evans/create-or-update-comment@e8674b075228eee787fea43ef493e45ece1004c9 # v5
         with:
           issue-number: ${{ github.event.issue.number }}
           body: |
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
index 8b0f88c3..30e66026 100644
--- a/.github/workflows/linting.yml
+++ b/.github/workflows/linting.yml
@@ -11,12 +11,12 @@ jobs:
   pre-commit:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+      - uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
 
-      - name: Set up Python 3.13
-        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
+      - name: Set up Python 3.14
+        uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6
         with:
-          python-version: "3.13"
+          python-version: "3.14"
 
       - name: Install pre-commit
         run: pip install pre-commit
@@ -28,14 +28,14 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out pipeline code
-        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+        uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
 
       - name: Install Nextflow
         uses: nf-core/setup-nextflow@v2
 
-      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5
+      - uses: actions/setup-python@e797f83bcb11b83ae66e0230d6156d7c80228e7c # v6
         with:
-          python-version: "3.13"
+          python-version: "3.14"
           architecture: "x64"
 
       - name: read .nf-core.yml
diff --git a/.github/workflows/linting_comment.yml b/.github/workflows/linting_comment.yml
index d43797d9..e6e9bc26 100644
--- a/.github/workflows/linting_comment.yml
+++ b/.github/workflows/linting_comment.yml
@@ -21,7 +21,7 @@ jobs:
         run: echo "pr_number=$(cat linting-logs/PR_number.txt)" >> $GITHUB_OUTPUT
 
       - name: Post PR comment
-        uses: marocchino/sticky-pull-request-comment@52423e01640425a022ef5fd42c6fb5f633a02728 # v2
+        uses: marocchino/sticky-pull-request-comment@773744901bac0e8cbb5a0dc842800d45e9b2b405 # v2
         with:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           number: ${{ steps.pr_number.outputs.pr_number }}
diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index e7b58449..e20bf6d0 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -18,7 +18,7 @@ concurrency:
 
 env:
   GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  NFT_VER: "0.9.2"
+  NFT_VER: "0.9.3"
   NFT_WORKDIR: "~"
   NXF_ANSI_LOG: false
   NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
@@ -40,7 +40,7 @@ jobs:
           rm -rf ./* || true
           rm -rf ./.??* || true
           ls -la ./
-      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+      - uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
         with:
           fetch-depth: 0
 
@@ -78,14 +78,14 @@ jobs:
           - isMain: false
             profile: "singularity"
         NXF_VER:
-          - "24.10.5"
+          - "25.04.0"
           - "latest-everything"
     env:
       NXF_ANSI_LOG: false
       TOTAL_SHARDS: ${{ needs.nf-test-changes.outputs.total_shards }}
 
     steps:
-      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+      - uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
         with:
           fetch-depth: 0
 
@@ -95,6 +95,7 @@ jobs:
         continue-on-error: ${{ matrix.NXF_VER == 'latest-everything' }}
         env:
           NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
+          NXF_VERSION: ${{ matrix.NXF_VER }}
         with:
           profile: ${{ matrix.profile }}
           shard: ${{ matrix.shard }}
diff --git a/.github/workflows/release-announcements.yml b/.github/workflows/release-announcements.yml
index 0f732495..e64cebd6 100644
--- a/.github/workflows/release-announcements.yml
+++ b/.github/workflows/release-announcements.yml
@@ -14,6 +14,11 @@ jobs:
         run: |
           echo "topics=$(curl -s https://nf-co.re/pipelines.json | jq -r '.remote_workflows[] | select(.full_name == "${{ github.repository }}") | .topics[]' | awk '{print "#"$0}' | tr '\n' ' ')" | sed 's/-//g' >> $GITHUB_OUTPUT
 
+      - name: get description
+        id: get_topics
+        run: |
+          echo "description=$(curl -s https://nf-co.re/pipelines.json | jq -r '.remote_workflows[] | select(.full_name == "${{ github.repository }}") | .description' >> $GITHUB_OUTPUT
+
       - uses: rzr/fediverse-action@master
         with:
           access-token: ${{ secrets.MASTODON_ACCESS_TOKEN }}
@@ -23,6 +28,8 @@ jobs:
           message: |
             Pipeline release! ${{ github.repository }} v${{ github.event.release.tag_name }} - ${{ github.event.release.name }}!
 
+            ${{ steps.get_topics.outputs.description }}
+
             Please see the changelog: ${{ github.event.release.html_url }}
 
             ${{ steps.get_topics.outputs.topics }} #nfcore #openscience #nextflow #bioinformatics
diff --git a/.github/workflows/template-version-comment.yml b/.github/workflows/template-version-comment.yml
index beb5c77f..c5988af9 100644
--- a/.github/workflows/template-version-comment.yml
+++ b/.github/workflows/template-version-comment.yml
@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out pipeline code
-        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
+        uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5
         with:
           ref: ${{ github.event.pull_request.head.sha }}
 
diff --git a/.gitpod.yml b/.gitpod.yml
deleted file mode 100644
index 83599f63..00000000
--- a/.gitpod.yml
+++ /dev/null
@@ -1,10 +0,0 @@
-image: nfcore/gitpod:latest
-tasks:
-  - name: Update Nextflow and setup pre-commit
-    command: |
-      pre-commit install --install-hooks
-      nextflow self-update
-
-vscode:
-  extensions:
-    - nf-core.nf-core-extensionpack # https://github.com/nf-core/vscode-extensionpack
diff --git a/.nf-core.yml b/.nf-core.yml
index fd3b556b..2dde97cc 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -5,7 +5,7 @@ lint:
   files_unchanged:
     - .github/CONTRIBUTING.md
   multiqc_config: false
-nf_core_version: 3.3.2
+nf_core_version: 3.4.1
 repository_type: pipeline
 template:
   author: Luisa Santus, Jose Espinosa-Carrasco
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index bb41beec..d06777a8 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -6,7 +6,7 @@ repos:
         additional_dependencies:
           - prettier@3.6.2
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
       - id: trailing-whitespace
         args: [--markdown-linebreak-ext=md]
diff --git a/.prettierignore b/.prettierignore
index edd29f01..2255e3e3 100644
--- a/.prettierignore
+++ b/.prettierignore
@@ -10,4 +10,5 @@ testing/
 testing*
 *.pyc
 bin/
+.nf-test/
 ro-crate-metadata.json
diff --git a/README.md b/README.md
index 1fef8df1..9469b556 100644
--- a/README.md
+++ b/README.md
@@ -5,12 +5,13 @@
   </picture>
 </h1>
 
+[![Open in GitHub Codespaces](https://github.com/codespaces/badge.svg)](https://github.com/codespaces/new/nf-core/multiplesequencealign)
 [![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml)
 [![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)
 [![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
 
-[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.5-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
-[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.2)
+[![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.04.0-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
+[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.4.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.4.1)
 [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
 [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
 [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
diff --git a/docs/usage.md b/docs/usage.md
index 94e2c71d..831a92e0 100644
--- a/docs/usage.md
+++ b/docs/usage.md
@@ -149,7 +149,7 @@ If `-profile` is not specified, the pipeline will run locally and expect all sof
 - `shifter`
   - A generic configuration profile to be used with [Shifter](https://nersc.gitlab.io/development/shifter/how-to-use/)
 - `charliecloud`
-  - A generic configuration profile to be used with [Charliecloud](https://hpc.github.io/charliecloud/)
+  - A generic configuration profile to be used with [Charliecloud](https://charliecloud.io/)
 - `apptainer`
   - A generic configuration profile to be used with [Apptainer](https://apptainer.org/)
 - `wave`
diff --git a/main.nf b/main.nf
index 0076a504..9e1377c8 100644
--- a/main.nf
+++ b/main.nf
@@ -74,7 +74,10 @@ workflow {
         params.monochrome_logs,
         args,
         params.outdir,
-        params.input
+        params.input,
+        params.help,
+        params.help_full,
+        params.show_hidden
     )
 
     //
diff --git a/modules.json b/modules.json
index ee541285..bb8b613c 100644
--- a/modules.json
+++ b/modules.json
@@ -12,7 +12,7 @@
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
+                        "git_sha": "e10b76ca0c66213581bec2833e30d31f239dec0b",
                         "installed_by": ["modules"]
                     }
                 }
@@ -21,17 +21,17 @@
                 "nf-core": {
                     "utils_nextflow_pipeline": {
                         "branch": "master",
-                        "git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
+                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nfcore_pipeline": {
                         "branch": "master",
-                        "git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
+                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nfschema_plugin": {
                         "branch": "master",
-                        "git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
+                        "git_sha": "4b406a74dc0449c0401ed87d5bfff4252fd277fd",
                         "installed_by": ["subworkflows"]
                     }
                 }
diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml
index 812fc4c5..dd513cbd 100644
--- a/modules/nf-core/multiqc/environment.yml
+++ b/modules/nf-core/multiqc/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::multiqc=1.29
+  - bioconda::multiqc=1.31
diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
index 0ac3c369..5288f5cc 100644
--- a/modules/nf-core/multiqc/main.nf
+++ b/modules/nf-core/multiqc/main.nf
@@ -3,8 +3,8 @@ process MULTIQC {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.29--pyhdfd78af_0' :
-        'biocontainers/multiqc:1.29--pyhdfd78af_0' }"
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/ef/eff0eafe78d5f3b65a6639265a16b89fdca88d06d18894f90fcdb50142004329/data' :
+        'community.wave.seqera.io/library/multiqc:1.31--1efbafd542a23882' }"
 
     input:
     path  multiqc_files, stageAs: "?/*"
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap
index 88e90571..17881d15 100644
--- a/modules/nf-core/multiqc/tests/main.nf.test.snap
+++ b/modules/nf-core/multiqc/tests/main.nf.test.snap
@@ -2,14 +2,14 @@
     "multiqc_versions_single": {
         "content": [
             [
-                "versions.yml:md5,c1fe644a37468f6dae548d98bc72c2c1"
+                "versions.yml:md5,8968b114a3e20756d8af2b80713bcc4f"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.2"
+            "nextflow": "25.04.6"
         },
-        "timestamp": "2025-05-22T11:50:41.182332996"
+        "timestamp": "2025-09-08T20:57:36.139055243"
     },
     "multiqc_stub": {
         "content": [
@@ -17,25 +17,25 @@
                 "multiqc_report.html",
                 "multiqc_data",
                 "multiqc_plots",
-                "versions.yml:md5,c1fe644a37468f6dae548d98bc72c2c1"
+                "versions.yml:md5,8968b114a3e20756d8af2b80713bcc4f"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.2"
+            "nextflow": "25.04.6"
         },
-        "timestamp": "2025-05-22T11:51:22.448739369"
+        "timestamp": "2025-09-08T20:59:15.142230631"
     },
     "multiqc_versions_config": {
         "content": [
             [
-                "versions.yml:md5,c1fe644a37468f6dae548d98bc72c2c1"
+                "versions.yml:md5,8968b114a3e20756d8af2b80713bcc4f"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.2"
+            "nextflow": "25.04.6"
         },
-        "timestamp": "2025-05-22T11:51:06.198928424"
+        "timestamp": "2025-09-08T20:58:29.629087066"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/multiqc/tests/tags.yml b/modules/nf-core/multiqc/tests/tags.yml
deleted file mode 100644
index bea6c0d3..00000000
--- a/modules/nf-core/multiqc/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-multiqc:
-  - modules/nf-core/multiqc/**
diff --git a/nextflow.config b/nextflow.config
index a7478897..bf1f6772 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -32,13 +32,15 @@ params {
     email_on_fail                = null
     plaintext_email              = false
     monochrome_logs              = false
-    hook_url                     = null
+    hook_url                     = System.getenv('HOOK_URL')
     help                         = false
     help_full                    = false
     show_hidden                  = false
     version                      = false
     pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/'
-    trace_report_suffix          = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')// Config options
+    trace_report_suffix          = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss')
+
+    // Config options
     config_profile_name        = null
     config_profile_description = null
 
@@ -91,7 +93,18 @@ profiles {
         apptainer.enabled       = false
         docker.runOptions       = '-u $(id -u):$(id -g)'
     }
-    arm {
+    arm64 {
+        process.arch            = 'arm64'
+        // TODO https://github.com/nf-core/modules/issues/6694
+        // For now if you're using arm64 you have to use wave for the sake of the maintainers
+        // wave profile
+        apptainer.ociAutoPull   = true
+        singularity.ociAutoPull = true
+        wave.enabled            = true
+        wave.freeze             = true
+        wave.strategy           = 'conda,container'
+    }
+    emulate_amd64 {
         docker.runOptions       = '-u $(id -u):$(id -g) --platform=linux/amd64'
     }
     singularity {
@@ -148,18 +161,6 @@ profiles {
         wave.freeze             = true
         wave.strategy           = 'conda,container'
     }
-    gitpod {
-        executor.name           = 'local'
-        executor.cpus           = 4
-        executor.memory         = 8.GB
-        process {
-            resourceLimits = [
-                memory: 8.GB,
-                cpus  : 4,
-                time  : 1.h
-            ]
-        }
-    }
     gpu {
         docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
         apptainer.runOptions    = '--nv'
@@ -169,6 +170,8 @@ profiles {
     test_full { includeConfig 'conf/test_full.config' }
 }
 
+// Set AWS client to anonymous when using the default igenomes_base
+aws.client.anonymous = !params.igenomes_ignore && params.igenomes_base?.startsWith('s3://ngi-igenomes/igenomes/') ?: false
 // Load nf-core custom profiles from different institutions
 
 // If params.custom_config_base is set AND either the NXF_OFFLINE environment variable is not set or params.custom_config_base is a local path, the nfcore_custom.config file from the specified base path is included.
@@ -258,46 +261,19 @@ manifest {
     description     = """Pipeline to run and benchmark multiple sequence alignment tools."""
     mainScript      = 'main.nf'
     defaultBranch   = 'master'
-    nextflowVersion = '!>=24.10.5'
+    nextflowVersion = '!>=25.04.0'
     version         = '1.2.0dev'
     doi             = ''
 }
 
 // Nextflow plugins
 plugins {
-    id 'nf-schema@2.4.2' // Validation of pipeline parameters and creation of an input channel from a sample sheet
+    id 'nf-schema@2.5.1' // Validation of pipeline parameters and creation of an input channel from a sample sheet
 }
 
 validation {
     defaultIgnoreParams = ["genomes"]
     monochromeLogs = params.monochrome_logs
-    help {
-        enabled = true
-        command = "nextflow run nf-core/multiplesequencealign -profile <docker/singularity/.../institute> --input samplesheet.csv --outdir <OUTDIR>"
-        fullParameter = "help_full"
-        showHiddenParameter = "show_hidden"
-        beforeText = """
--\033[2m----------------------------------------------------\033[0m-
-                                        \033[0;32m,--.\033[0;30m/\033[0;32m,-.\033[0m
-\033[0;34m        ___     __   __   __   ___     \033[0;32m/,-._.--~\'\033[0m
-\033[0;34m  |\\ | |__  __ /  ` /  \\ |__) |__         \033[0;33m}  {\033[0m
-\033[0;34m  | \\| |       \\__, \\__/ |  \\ |___     \033[0;32m\\`-._,-`-,\033[0m
-                                        \033[0;32m`._,._,\'\033[0m
-\033[0;35m  nf-core/multiplesequencealign ${manifest.version}\033[0m
--\033[2m----------------------------------------------------\033[0m-
-"""
-        afterText = """${manifest.doi ? "\n* The pipeline\n" : ""}${manifest.doi.tokenize(",").collect { "    https://doi.org/${it.trim().replace('https://doi.org/','')}"}.join("\n")}${manifest.doi ? "\n" : ""}
-* The nf-core framework
-    https://doi.org/10.1038/s41587-020-0439-x
-
-* Software dependencies
-    https://github.com/nf-core/multiplesequencealign/blob/master/CITATIONS.md
-"""
-    }
-    summary {
-        beforeText = validation.help.beforeText
-        afterText = validation.help.afterText
-    }
 }
 
 // Load modules.config for DSL2 module specific options
diff --git a/nextflow_schema.json b/nextflow_schema.json
index afc24ce9..7b318434 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -224,6 +224,18 @@
                     "fa_icon": "far calendar",
                     "description": "Suffix to add to the trace report filename. Default is the date and time in the format yyyy-MM-dd_HH-mm-ss.",
                     "hidden": true
+                },
+                "help": {
+                    "type": ["boolean", "string"],
+                    "description": "Display the help message."
+                },
+                "help_full": {
+                    "type": "boolean",
+                    "description": "Display the full detailed help message."
+                },
+                "show_hidden": {
+                    "type": "boolean",
+                    "description": "Display hidden parameters in the help message (only works when --help or --help_full are provided)."
                 }
             }
         }
diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
index 116ad63a..c8631a45 100644
--- a/ro-crate-metadata.json
+++ b/ro-crate-metadata.json
@@ -22,8 +22,8 @@
             "@id": "./",
             "@type": "Dataset",
             "creativeWorkStatus": "InProgress",
-            "datePublished": "2025-07-08T11:38:29+00:00",
-            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A524.10.5-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.3.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.3.2)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/multiplesequencealign** is a bioinformatics pipeline that ...\n\n<!-- TODO nf-core:\n   Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the\n   major pipeline sections and the types of output it produces. You're giving an overview to someone new\n   to nf-core here, in 15-20 seconds. For an example, see https://github.com/nf-core/rnaseq/blob/master/README.md#introduction\n-->\n\n<!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core\n     workflows use the \"tube map\" design for that. See https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams#examples for examples.   -->\n<!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n<!-- TODO nf-core: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.\n     Explain what rows and columns represent. For instance (please edit as appropriate):\n\nFirst, prepare a samplesheet with your input data that looks as follows:\n\n`samplesheet.csv`:\n\n```csv\nsample,fastq_1,fastq_2\nCONTROL_REP1,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz\n```\n\nEach row represents a fastq file (single-end) or a pair of fastq files (paired end).\n\n-->\n\nNow, you can run the pipeline using:\n\n<!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile <docker/singularity/.../institute> \\\n   --input samplesheet.csv \\\n   --outdir <OUTDIR>\n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus, Jose Espinosa-Carrasco.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n<!-- TODO nf-core: If applicable, make list of people who have also contributed -->\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->\n<!-- If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->\n\n<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
+            "datePublished": "2025-10-16T13:39:01+00:00",
+            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![Open in GitHub Codespaces](https://github.com/codespaces/badge.svg)](https://github.com/codespaces/new/nf-core/multiplesequencealign)\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.04.0-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.4.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.4.1)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/multiplesequencealign** is a bioinformatics pipeline that ...\n\n<!-- TODO nf-core:\n   Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the\n   major pipeline sections and the types of output it produces. You're giving an overview to someone new\n   to nf-core here, in 15-20 seconds. For an example, see https://github.com/nf-core/rnaseq/blob/master/README.md#introduction\n-->\n\n<!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core\n     workflows use the \"tube map\" design for that. See https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams#examples for examples.   -->\n<!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n<!-- TODO nf-core: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.\n     Explain what rows and columns represent. For instance (please edit as appropriate):\n\nFirst, prepare a samplesheet with your input data that looks as follows:\n\n`samplesheet.csv`:\n\n```csv\nsample,fastq_1,fastq_2\nCONTROL_REP1,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz\n```\n\nEach row represents a fastq file (single-end) or a pair of fastq files (paired end).\n\n-->\n\nNow, you can run the pipeline using:\n\n<!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile <docker/singularity/.../institute> \\\n   --input samplesheet.csv \\\n   --outdir <OUTDIR>\n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus, Jose Espinosa-Carrasco.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n<!-- TODO nf-core: If applicable, make list of people who have also contributed -->\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->\n<!-- If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->\n\n<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
             "hasPart": [
                 {
                     "@id": "main.nf"
@@ -99,7 +99,7 @@
             },
             "mentions": [
                 {
-                    "@id": "#a8ef94cf-8c02-4748-b3b1-e05b80d475c3"
+                    "@id": "#00ed17a8-45ab-4694-a5e6-6807505dec5a"
                 }
             ],
             "name": "nf-core/multiplesequencealign"
@@ -123,7 +123,7 @@
             "@id": "main.nf",
             "@type": ["File", "SoftwareSourceCode", "ComputationalWorkflow"],
             "dateCreated": "",
-            "dateModified": "2025-07-08T11:38:29Z",
+            "dateModified": "2025-10-16T13:39:01Z",
             "dct:conformsTo": "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE/",
             "keywords": ["nf-core", "nextflow"],
             "license": ["MIT"],
@@ -147,14 +147,14 @@
             "url": {
                 "@id": "https://www.nextflow.io/"
             },
-            "version": "!>=24.10.5"
+            "version": "!>=25.04.0"
         },
         {
-            "@id": "#a8ef94cf-8c02-4748-b3b1-e05b80d475c3",
+            "@id": "#00ed17a8-45ab-4694-a5e6-6807505dec5a",
             "@type": "TestSuite",
             "instance": [
                 {
-                    "@id": "#76633d73-bd93-4c95-ac14-b9bf4004fc37"
+                    "@id": "#e84f91ad-ff47-4bcc-b10f-674e45b93b98"
                 }
             ],
             "mainEntity": {
@@ -163,7 +163,7 @@
             "name": "Test suite for nf-core/multiplesequencealign"
         },
         {
-            "@id": "#76633d73-bd93-4c95-ac14-b9bf4004fc37",
+            "@id": "#e84f91ad-ff47-4bcc-b10f-674e45b93b98",
             "@type": "TestInstance",
             "name": "GitHub Actions workflow for testing nf-core/multiplesequencealign",
             "resource": "repos/nf-core/multiplesequencealign/actions/workflows/nf-test.yml",
diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index 2a93f2b1..bcf83ef5 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -11,6 +11,7 @@
 include { UTILS_NFSCHEMA_PLUGIN     } from '../../nf-core/utils_nfschema_plugin'
 include { paramsSummaryMap          } from 'plugin/nf-schema'
 include { samplesheetToList         } from 'plugin/nf-schema'
+include { paramsHelp                } from 'plugin/nf-schema'
 include { completionEmail           } from '../../nf-core/utils_nfcore_pipeline'
 include { completionSummary         } from '../../nf-core/utils_nfcore_pipeline'
 include { imNotification            } from '../../nf-core/utils_nfcore_pipeline'
@@ -32,6 +33,9 @@ workflow PIPELINE_INITIALISATION {
     nextflow_cli_args //   array: List of positional nextflow CLI args
     outdir            //  string: The output directory where the results will be saved
     input             //  string: Path to input samplesheet
+    help              // boolean: Display help message and exit
+    help_full         // boolean: Show the full help message
+    show_hidden       // boolean: Show hidden parameters in the help message
 
     main:
 
@@ -50,10 +54,35 @@ workflow PIPELINE_INITIALISATION {
     //
     // Validate parameters and generate parameter summary to stdout
     //
+    before_text = """
+-\033[2m----------------------------------------------------\033[0m-
+                                        \033[0;32m,--.\033[0;30m/\033[0;32m,-.\033[0m
+\033[0;34m        ___     __   __   __   ___     \033[0;32m/,-._.--~\'\033[0m
+\033[0;34m  |\\ | |__  __ /  ` /  \\ |__) |__         \033[0;33m}  {\033[0m
+\033[0;34m  | \\| |       \\__, \\__/ |  \\ |___     \033[0;32m\\`-._,-`-,\033[0m
+                                        \033[0;32m`._,._,\'\033[0m
+\033[0;35m  nf-core/multiplesequencealign ${workflow.manifest.version}\033[0m
+-\033[2m----------------------------------------------------\033[0m-
+"""
+    after_text = """${workflow.manifest.doi ? "\n* The pipeline\n" : ""}${workflow.manifest.doi.tokenize(",").collect { "    https://doi.org/${it.trim().replace('https://doi.org/','')}"}.join("\n")}${workflow.manifest.doi ? "\n" : ""}
+* The nf-core framework
+    https://doi.org/10.1038/s41587-020-0439-x
+
+* Software dependencies
+    https://github.com/nf-core/multiplesequencealign/blob/master/CITATIONS.md
+"""
+    command = "nextflow run ${workflow.manifest.name} -profile <docker/singularity/.../institute> --input samplesheet.csv --outdir <OUTDIR>"
+
     UTILS_NFSCHEMA_PLUGIN (
         workflow,
         validate_params,
-        null
+        null,
+        help,
+        help_full,
+        show_hidden,
+        before_text,
+        after_text,
+        command
     )
 
     //
diff --git a/subworkflows/nf-core/utils_nextflow_pipeline/tests/tags.yml b/subworkflows/nf-core/utils_nextflow_pipeline/tests/tags.yml
deleted file mode 100644
index f8476112..00000000
--- a/subworkflows/nf-core/utils_nextflow_pipeline/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-subworkflows/utils_nextflow_pipeline:
-  - subworkflows/nf-core/utils_nextflow_pipeline/**
diff --git a/subworkflows/nf-core/utils_nfcore_pipeline/tests/tags.yml b/subworkflows/nf-core/utils_nfcore_pipeline/tests/tags.yml
deleted file mode 100644
index ac8523c9..00000000
--- a/subworkflows/nf-core/utils_nfcore_pipeline/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-subworkflows/utils_nfcore_pipeline:
-  - subworkflows/nf-core/utils_nfcore_pipeline/**
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/main.nf b/subworkflows/nf-core/utils_nfschema_plugin/main.nf
index 4994303e..ee4738c8 100644
--- a/subworkflows/nf-core/utils_nfschema_plugin/main.nf
+++ b/subworkflows/nf-core/utils_nfschema_plugin/main.nf
@@ -4,6 +4,7 @@
 
 include { paramsSummaryLog   } from 'plugin/nf-schema'
 include { validateParameters } from 'plugin/nf-schema'
+include { paramsHelp         } from 'plugin/nf-schema'
 
 workflow UTILS_NFSCHEMA_PLUGIN {
 
@@ -15,29 +16,56 @@ workflow UTILS_NFSCHEMA_PLUGIN {
                         //           when this input is empty it will automatically use the configured schema or
                         //           "${projectDir}/nextflow_schema.json" as default. This input should not be empty
                         //           for meta pipelines
+    help                // boolean:  show help message
+    help_full           // boolean:  show full help message
+    show_hidden         // boolean:  show hidden parameters in help message
+    before_text         // string:   text to show before the help message and parameters summary
+    after_text          // string:   text to show after the help message and parameters summary
+    command             // string:   an example command of the pipeline
 
     main:
 
+    if(help || help_full) {
+        help_options = [
+            beforeText: before_text,
+            afterText: after_text,
+            command: command,
+            showHidden: show_hidden,
+            fullHelp: help_full,
+        ]
+        if(parameters_schema) {
+            help_options << [parametersSchema: parameters_schema]
+        }
+        log.info paramsHelp(
+            help_options,
+            params.help instanceof String ? params.help : "",
+        )
+        exit 0
+    }
+
     //
     // Print parameter summary to stdout. This will display the parameters
     // that differ from the default given in the JSON schema
     //
+
+    summary_options = [:]
     if(parameters_schema) {
-        log.info paramsSummaryLog(input_workflow, parameters_schema:parameters_schema)
-    } else {
-        log.info paramsSummaryLog(input_workflow)
+        summary_options << [parametersSchema: parameters_schema]
     }
+    log.info before_text
+    log.info paramsSummaryLog(summary_options, input_workflow)
+    log.info after_text
 
     //
     // Validate the parameters using nextflow_schema.json or the schema
     // given via the validation.parametersSchema configuration option
     //
     if(validate_params) {
+        validateOptions = [:]
         if(parameters_schema) {
-            validateParameters(parameters_schema:parameters_schema)
-        } else {
-            validateParameters()
+            validateOptions << [parametersSchema: parameters_schema]
         }
+        validateParameters(validateOptions)
     }
 
     emit:
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test
index 8fb30164..c977917a 100644
--- a/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test
+++ b/subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test
@@ -25,6 +25,12 @@ nextflow_workflow {
                 input[0] = workflow
                 input[1] = validate_params
                 input[2] = ""
+                input[3] = false
+                input[4] = false
+                input[5] = false
+                input[6] = ""
+                input[7] = ""
+                input[8] = ""
                 """
             }
         }
@@ -51,6 +57,12 @@ nextflow_workflow {
                 input[0] = workflow
                 input[1] = validate_params
                 input[2] = ""
+                input[3] = false
+                input[4] = false
+                input[5] = false
+                input[6] = ""
+                input[7] = ""
+                input[8] = ""
                 """
             }
         }
@@ -77,6 +89,12 @@ nextflow_workflow {
                 input[0] = workflow
                 input[1] = validate_params
                 input[2] = "${projectDir}/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow_schema.json"
+                input[3] = false
+                input[4] = false
+                input[5] = false
+                input[6] = ""
+                input[7] = ""
+                input[8] = ""
                 """
             }
         }
@@ -103,6 +121,12 @@ nextflow_workflow {
                 input[0] = workflow
                 input[1] = validate_params
                 input[2] = "${projectDir}/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow_schema.json"
+                input[3] = false
+                input[4] = false
+                input[5] = false
+                input[6] = ""
+                input[7] = ""
+                input[8] = ""
                 """
             }
         }
@@ -114,4 +138,36 @@ nextflow_workflow {
             )
         }
     }
+
+    test("Should create a help message") {
+
+        when {
+
+            params {
+                test_data   = ''
+                outdir      = null
+            }
+
+            workflow {
+                """
+                validate_params = true
+                input[0] = workflow
+                input[1] = validate_params
+                input[2] = "${projectDir}/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow_schema.json"
+                input[3] = true
+                input[4] = false
+                input[5] = false
+                input[6] = "Before"
+                input[7] = "After"
+                input[8] = "nextflow run test/test"
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert workflow.success }
+            )
+        }
+    }
 }
diff --git a/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config b/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config
index 09ef842a..8d8c7371 100644
--- a/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config
+++ b/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow.config
@@ -1,8 +1,8 @@
 plugins {
-    id "nf-schema@2.4.2"
+    id "nf-schema@2.5.1"
 }
 
 validation {
     parametersSchema = "${projectDir}/subworkflows/nf-core/utils_nfschema_plugin/tests/nextflow_schema.json"
     monochromeLogs = true
-}
\ No newline at end of file
+}
diff --git a/tests/.nftignore b/tests/.nftignore
index 158c83c5..e128a128 100644
--- a/tests/.nftignore
+++ b/tests/.nftignore
@@ -1,10 +1,11 @@
 .DS_Store
 multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt
-multiqc/multiqc_data/BETA-multiqc.parquet
+multiqc/multiqc_data/multiqc.parquet
 multiqc/multiqc_data/multiqc.log
 multiqc/multiqc_data/multiqc_data.json
 multiqc/multiqc_data/multiqc_sources.txt
 multiqc/multiqc_data/multiqc_software_versions.txt
+multiqc/multiqc_data/llms-full.txt
 multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
 multiqc/multiqc_report.html
 fastqc/*_fastqc.{html,zip}
diff --git a/tests/default.nf.test b/tests/default.nf.test
index ecda5b01..841c717f 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -20,8 +20,6 @@ nextflow_pipeline {
             assertAll(
                 { assert workflow.success},
                 { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
                     // All stable path name, with a relative path

From 1fae4b2d5758b49fee32ed3c6356c7059f9c3740 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 11:41:49 +0200
Subject: [PATCH 04/58] Update merging

---
 .github/workflows/nf-test.yml            |  2 +-
 ro-crate-metadata.json                   | 11 ++++++++---
 subworkflows/local/COMPUTE_TREES/main.nf |  2 --
 tests/main.nf.test                       |  2 +-
 4 files changed, 10 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index e20bf6d0..94d123f0 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -78,7 +78,7 @@ jobs:
           - isMain: false
             profile: "singularity"
         NXF_VER:
-          - "25.04.0"
+          - "25.04.2"
           - "latest-everything"
     env:
       NXF_ANSI_LOG: false
diff --git a/ro-crate-metadata.json b/ro-crate-metadata.json
index 75881198..f0ed7b1c 100644
--- a/ro-crate-metadata.json
+++ b/ro-crate-metadata.json
@@ -23,7 +23,7 @@
             "@type": "Dataset",
             "creativeWorkStatus": "InProgress",
             "datePublished": "2025-10-16T13:39:01+00:00",
-            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![Open in GitHub Codespaces](https://github.com/codespaces/badge.svg)](https://github.com/codespaces/new/nf-core/multiplesequencealign)\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.04.0-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.4.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.4.1)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\n**nf-core/multiplesequencealign** is a bioinformatics pipeline that ...\n\n<!-- TODO nf-core:\n   Complete this sentence with a 2-3 sentence summary of what types of data the pipeline ingests, a brief overview of the\n   major pipeline sections and the types of output it produces. You're giving an overview to someone new\n   to nf-core here, in 15-20 seconds. For an example, see https://github.com/nf-core/rnaseq/blob/master/README.md#introduction\n-->\n\n<!-- TODO nf-core: Include a figure that guides the user through the major workflow steps. Many nf-core\n     workflows use the \"tube map\" design for that. See https://nf-co.re/docs/guidelines/graphic_design/workflow_diagrams#examples for examples.   -->\n<!-- TODO nf-core: Fill in short bullet-pointed list of the default steps in the pipeline -->1. Read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))2. Present QC for raw reads ([`MultiQC`](http://multiqc.info/))\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n<!-- TODO nf-core: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.\n     Explain what rows and columns represent. For instance (please edit as appropriate):\n\nFirst, prepare a samplesheet with your input data that looks as follows:\n\n`samplesheet.csv`:\n\n```csv\nsample,fastq_1,fastq_2\nCONTROL_REP1,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz\n```\n\nEach row represents a fastq file (single-end) or a pair of fastq files (paired end).\n\n-->\n\nNow, you can run the pipeline using:\n\n<!-- TODO nf-core: update the following command to include all required parameters for a minimal example -->\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile <docker/singularity/.../institute> \\\n   --input samplesheet.csv \\\n   --outdir <OUTDIR>\n```\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\nFor more details and further functionality, please refer to the [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n## Pipeline output\n\nTo see the results of an example test run with a full size dataset refer to the [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details about the output files and reports, please refer to the\n[output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus, Jose Espinosa-Carrasco.\n\nWe thank the following people for their extensive assistance in the development of this pipeline:\n\n<!-- TODO nf-core: If applicable, make list of people who have also contributed -->\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\n<!-- TODO nf-core: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file. -->\n<!-- If you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.XXXXXX](https://doi.org/10.5281/zenodo.XXXXXX) -->\n\n<!-- TODO nf-core: Add bibliography of tools and data used in your pipeline -->\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
+            "description": "<h1>\n  <picture>\n    <source media=\"(prefers-color-scheme: dark)\" srcset=\"docs/images/nf-core-multiplesequencealign_logo_dark.png\">\n    <img alt=\"nf-core/multiplesequencealign\" src=\"docs/images/nf-core-multiplesequencealign_logo_light.png\">\n  </picture>\n</h1>\n\n[![Open in GitHub Codespaces](https://github.com/codespaces/badge.svg)](https://github.com/codespaces/new/nf-core/multiplesequencealign)\n[![GitHub Actions CI Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/nf-test.yml)\n[![GitHub Actions Linting Status](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/multiplesequencealign/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/multiplesequencealign/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.13889386-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.13889386)\n[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)\n\n[![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.04.2-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)\n[![nf-core template version](https://img.shields.io/badge/nf--core_template-3.4.1-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/3.4.1)\n[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)\n[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)\n[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)\n[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/multiplesequencealign)\n\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23multiplesequencealign-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/multiplesequencealign)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)\n\n## Introduction\n\nUse **nf-core/multiplesequencealign** to:\n\n1. **Deploy** one (or many) of the most popular Multiple Sequence Alignment (MSA) tools.\n2. **Benchmark** MSA tools (and their inputs) using various metrics.\n\nMain steps:\n\n  <details>\n      <summary><strong>Inputs summary</strong> (Optional)</summary>\n      <p>Computation of summary statistics on the input files (e.g., average sequence similarity across the input sequences, their length, pLDDT extraction if available).</p>\n  </details>\n\n  <details>\n      <summary><strong>Guide Tree</strong> (Optional)</summary>\n      <p>Renders a guide tree with a chosen tool (list available in <a href=\"https://nf-co.re/multiplesequencealign/usage#2-guide-trees\">usage</a>). Some aligners use guide trees to define the order in which the sequences are aligned.</p>\n  </details>\n\n  <details>\n      <summary><strong>Align</strong> (Required)</summary>\n      <p>Aligns the sequences with a chosen tool (list available in <a href=\"https://nf-co.re/multiplesequencealign/usage#3-align\">usage</a>).</p>\n  </details>\n\n  <details>\n      <summary><strong>Evaluate</strong> (Optional)</summary>\n      <p>Evaluates the generated alignments with different metrics: Sum Of Pairs (SoP), Total Column score (TC), iRMSD, Total Consistency Score (TCS), etc.</p>\n  </details>\n\n  <details>\n      <summary><strong>Report</strong>(Optional)</summary>\n      <p>Reports the collected information of the runs in a Shiny app and a summary table in MultiQC. Optionally, it can also render the <a href=\"https://github.com/steineggerlab/foldmason\">Foldmason</a> MSA visualization in HTML format.</p>\n  </details>\n\n<br>\n\nMore introductory material: [bytesize talk](https://youtu.be/iRY-Y1p5gtc), [nextflow summit talk](https://www.youtube.com/watch?v=suNulysHIN0), [poster](https://github.com/nf-core/multiplesequencealign/blob/dev/docs/images/poster-nf-msa.pdf).\n\n![Alt text](docs/images/nf-core-msa_metro_map.png?raw=true \"nf-core-msa metro map\")\n\n## Usage\n\n> [!NOTE]\n> If you are new to Nextflow and nf-core, please refer to [this page](https://nf-co.re/docs/usage/installation) on how to set-up Nextflow. Make sure to [test your setup](https://nf-co.re/docs/usage/introduction#how-to-run-a-pipeline) with `-profile test` before running the workflow on actual data.\n\n### Quick start - test run\n\nTo get a feeling of what the pipeline does, run:\n\n(You don't need to download or provide any file, try it!)\n\n```\nnextflow run nf-core/multiplesequencealign \\\n   -profile test_tiny,docker \\\n   --outdir results\n```\n\nand if you want to see how a more complete run looks like, you can try:\n\n```\nnextflow run nf-core/multiplesequencealign \\\n   -profile test,docker \\\n   --outdir results\n```\n\n## How to set up an easy run:\n\n> [!NOTE]\n> We have a lot more of use cases examples under [FAQs](\"https://nf-co.re/multiplesequencealign/usage/FAQs)\n\n### Input data\n\nYou can provide either (or both) a **fasta** file or a set of **protein structures**.\n\nAlternatively, you can provide a [samplesheet](https://nf-co.re/multiplesequencealign/usage/#samplesheet-input) and a [toolsheet](https://nf-co.re/multiplesequencealign/usage/#toolsheet-input).\n\nSee below how to provide them.\n\n> Find some example input data [here](https://github.com/nf-core/test-datasets/tree/multiplesequencealign)\n\n### CASE 1: One input dataset, one tool.\n\nIf you only have one dataset and want to align it using one specific MSA tool (e.g. FAMSA or FOLDMASON), you can run the pipeline with one single command.\n\nIs your input a fasta file ([example](https://github.com/nf-core/test-datasets/blob/multiplesequencealign/testdata/setoxin-ref.fa))? Then:\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile easy_deploy,docker \\\n   --seqs <YOUR_FASTA.fa> \\\n   --aligner FAMSA \\\n   --outdir outdir\n```\n\nIs your input a directory where your PDB files are stored ([example](https://github.com/nf-core/test-datasets/blob/multiplesequencealign/testdata/af2_structures/seatoxin-ref.tar.gz))? Then:\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile easy_deploy,docker \\\n   --pdbs_dir <PATH_TO_YOUR_PDB_DIR> \\\n   --aligner FOLDMASON \\\n   --outdir outdir\n```\n\n<details>\n  <summary> FAQ: Which are the available tools I can use?</summary>\n  Check the list here: <a href=\"https://nf-co.re/multiplesequencealign/usage/#3-align\"> available tools</a>.\n</details>\n\n<details>\n  <summary> FAQ: Can I use both <em>--seqs</em> and <em>--pdbs_dir</em>?</summary>\n  Yes, go for it! This might be useful if you want a structural evaluation of a sequence-based aligner for instance.\n</details>\n\n<details>\n  <summary> FAQ: Can I specify also which guidetree to use? </summary>\n  Yes, use the <code>--tree</code> flag. More info: <a href=\"https://nf-co.re/multiplesequencealign/usage\">usage</a> and <a href=\"https://nf-co.re/multiplesequencealign/parameters\">parameters</a>.\n</details>\n\n<details>\n  <summary> FAQ: Can I specify the arguments of the tools (tree and aligner)? </summary>\n  Yes, use the <code>--args_tree</code> and <code>--args_aligner</code> flags. More info: <a href=\"https://nf-co.re/multiplesequencealign/usage\">usage</a> and <a href=\"https://nf-co.re/multiplesequencealign/parameters\">parameters</a>.\n</details>\n\n### CASE 2: Multiple datasets, multiple tools.\n\n```bash\nnextflow run nf-core/multiplesequencealign \\\n   -profile test,docker \\\n   --input <samplesheet.csv> \\\n   --tools <toolsheet.csv> \\\n   --outdir outdir\n```\n\nYou need **2 input files**:\n\n- **samplesheet** (your datasets)\n- **toolsheet** (which tools you want to use).\n\n<details>\n  <summary> What is a samplesheet?</summary>\n  The sample sheet defines the <b>input datasets</b> (sequences, structures, etc.) that the pipeline will process.\n\nA minimal version:\n\n```csv\nid,fasta\nseatoxin,seatoxin.fa\ntoxin,toxin.fa\n```\n\nA more complete one:\n\n```csv\nid,fasta,reference,optional_data\nseatoxin,seatoxin.fa,seatoxin-ref.fa,seatoxin_structures\ntoxin,toxin.fa,toxin-ref.fa,toxin_structures\n```\n\nEach row represents a set of sequences (in this case the seatoxin and toxin protein families) to be aligned and the associated (if available) reference alignments and dependency files (this can be anything from protein structure or any other information you would want to use in your favourite MSA tool).\n\nPlease check: <a href=\"https://nf-co.re/multiplesequencealign/usage/#samplesheet-input\">usage</a>.\n\n> [!NOTE]\n> The only required input is the id column and either fasta or optional_data.\n\n</details>\n\n<details>\n  <summary> What is a toolsheet?</summary>\n  The toolsheet specifies <em>which combination of tools will be deployed and benchmarked in the pipeline</em>.\n\nEach line defines a combination of guide tree and multiple sequence aligner to run with the respective arguments to be used.\n\nThe only required field is `aligner`. The fields `tree`, `args_tree` and `args_aligner` are optional and can be left empty.\n\nA minimal version:\n\n```csv\ntree,args_tree,aligner,args_aligner\n,,FAMSA,\n```\n\nThis will run the FAMSA aligner.\n\nA more complex one:\n\n```csv\ntree,args_tree,aligner,args_aligner\nFAMSA, -gt upgma -medoidtree, FAMSA,\n, ,TCOFFEE,\nFAMSA,,REGRESSIVE,\n```\n\nThis will run, in parallel:\n\n- the FAMSA guidetree with the arguments <em>-gt upgma -medoidtree</em>. This guidetree is then used as input for the FAMSA aligner.\n- the TCOFFEE aligner\n- the FAMSA guidetree with default arguments. This guidetree is then used as input for the REGRESSIVE aligner.\n\nPlease check: <a href=\"https://nf-co.re/multiplesequencealign/usage/#toolsheet-input\">usage</a>.\n\n> [!NOTE]\n> The only required input is `aligner`.\n\n</details>\n\nFor more details on more advanced runs: [usage documentation](https://nf-co.re/multiplesequencealign/usage) and the [parameter documentation](https://nf-co.re/multiplesequencealign/parameters).\n\n> [!WARNING]\n> Please provide pipeline parameters via the CLI or Nextflow `-params-file` option. Custom config files including those provided by the `-c` Nextflow option can be used to provide any configuration _**except for parameters**_; see [docs](https://nf-co.re/docs/usage/getting_started/configuration#custom-configuration-files).\n\n## Pipeline resources\n\nWhich resources is the pipeline using? You can find the default resources used in [base.config](conf/base.config).\n\nIf you are using specific profiles, e.g. [test](conf/test.config), these will overwrite the defaults.\n\nIf you want to modify the needed resources, please refer [usage](https://nf-co.re/multiplesequencealign/docs/usage/#custom-configuration).\n\n## Pipeline output\n\nExample results: [results](https://nf-co.re/multiplesequencealign/results) tab on the nf-core website pipeline page.\nFor more details: [output documentation](https://nf-co.re/multiplesequencealign/output).\n\n## Extending the pipeline\n\nFor details on how to add your favourite guide tree, MSA or evaluation step in nf-core/multiplesequencealign please refer to the [extending documentation](https://nf-co.re/multiplesequencealign/usage/adding_a_tool).\n\n## Credits\n\nnf-core/multiplesequencealign was originally written by Luisa Santus ([@luisas](https://github.com/luisas)) and Jose Espinosa-Carrasco ([@JoseEspinosa](https://github.com/JoseEspinosa)) from The Comparative Bioinformatics Group at The Centre for Genomic Regulation, Spain.\n\nThe following people have significantly contributed to the development of the pipeline and its modules: Leon Rauschning ([@lrauschning](https://github.com/lrauschning)), Alessio Vignoli ([@alessiovignoli](https://github.com/alessiovignoli)), Igor Trujnara ([@itrujnara](https://github.com/itrujnara)) and Leila Mansouri ([@l-mansouri](https://github.com/l-mansouri)).\n\n## Contributions and Support\n\nIf you would like to contribute to this pipeline, please see the [contributing guidelines](.github/CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#multiplesequencealign` channel](https://nfcore.slack.com/channels/multiplesequencealign) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citations\n\nIf you use nf-core/multiplesequencealign for your analysis, please cite it using the following doi: [10.5281/zenodo.13889386](https://doi.org/10.5281/zenodo.13889386)\n\nAn extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.\n\nYou can cite the `nf-core` publication as follows:\n\n> **The nf-core framework for community-curated bioinformatics pipelines.**\n>\n> Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso & Sven Nahnsen.\n>\n> _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n",
             "hasPart": [
                 {
                     "@id": "main.nf"
@@ -167,8 +167,13 @@
             "sdPublisher": {
                 "@id": "https://nf-co.re/"
             },
-            "url": ["https://github.com/nf-core/multiplesequencealign", "https://nf-co.re/multiplesequencealign/dev/"],
-            "version": ["1.2.0dev"]
+            "url": [
+                "https://github.com/nf-core/multiplesequencealign",
+                "https://nf-co.re/multiplesequencealign/dev/"
+            ],
+            "version": [
+                "1.2.0dev"
+            ]
         },
         {
             "@id": "https://w3id.org/workflowhub/workflow-ro-crate#nextflow",
diff --git a/subworkflows/local/COMPUTE_TREES/main.nf b/subworkflows/local/COMPUTE_TREES/main.nf
index bd33593a..66de6dfa 100644
--- a/subworkflows/local/COMPUTE_TREES/main.nf
+++ b/subworkflows/local/COMPUTE_TREES/main.nf
@@ -6,8 +6,6 @@ include { FAMSA_GUIDETREE    } from '../../../modules/nf-core/famsa/guidetree/ma
 include { CLUSTALO_GUIDETREE } from '../../../modules/nf-core/clustalo/guidetree/main'
 include { MAFFT_GUIDETREE    } from '../../../modules/nf-core/mafft/guidetree/main'
 
-include { CUSTOM_PDBSTOFASTA } from '../../../modules/local/custom/pdbtofasta'
-include { FASTAVALIDATOR     } from '../../../modules/nf-core/fastavalidator/main'
 
 workflow COMPUTE_TREES {
 
diff --git a/tests/main.nf.test b/tests/main.nf.test
index 12277da7..113bda85 100644
--- a/tests/main.nf.test
+++ b/tests/main.nf.test
@@ -13,7 +13,7 @@ nextflow_pipeline {
                 tools  = 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv'
 
                 // Output directory
-                outdir = "./outdir/"
+                outdir = "$outputDir"
             }
         }
 

From d50e595a0cc5a8d628ea172b4ee33162a080754d Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 11:44:01 +0200
Subject: [PATCH 05/58] remove redundant import

---
 .../local/utils_nfcore_multiplesequencealign_pipeline/main.nf    | 1 -
 1 file changed, 1 deletion(-)

diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index 9149d553..8f475c62 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -11,7 +11,6 @@
 include { UTILS_NFSCHEMA_PLUGIN     } from '../../nf-core/utils_nfschema_plugin'
 include { paramsSummaryMap          } from 'plugin/nf-schema'
 include { samplesheetToList         } from 'plugin/nf-schema'
-include { paramsHelp                } from 'plugin/nf-schema'
 include { completionEmail           } from '../../nf-core/utils_nfcore_pipeline'
 include { completionSummary         } from '../../nf-core/utils_nfcore_pipeline'
 include { imNotification            } from '../../nf-core/utils_nfcore_pipeline'

From bbeab637d3c62343bc6df067ccd35ffb4be5f3d9 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 11:57:17 +0200
Subject: [PATCH 06/58] Fix precommit

---
 bin/calc_seqstats.py                            | 1 -
 bin/shiny_app/static/bootstrap.min.css          | 2 +-
 modules/local/custom/calculate_seqstats/main.nf | 2 --
 workflows/multiplesequencealign.nf              | 2 --
 4 files changed, 1 insertion(+), 6 deletions(-)

diff --git a/bin/calc_seqstats.py b/bin/calc_seqstats.py
index 68ca39ae..4bfe987c 100755
--- a/bin/calc_seqstats.py
+++ b/bin/calc_seqstats.py
@@ -36,4 +36,3 @@ def get_seq_lengths(fasta_file):
 stats_df["n_sequences"] = len(summary_lengths)
 stats_df.rename(columns={"mean": "seqlength_mean", "max": "seqlength_max", "median": "seqlength_median"}, inplace=True)
 stats_df.to_csv(outfile_summary, sep=",", index=False)
-
diff --git a/bin/shiny_app/static/bootstrap.min.css b/bin/shiny_app/static/bootstrap.min.css
index 7b9b77cc..28f170a4 100644
--- a/bin/shiny_app/static/bootstrap.min.css
+++ b/bin/shiny_app/static/bootstrap.min.css
@@ -1 +1 @@
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diff --git a/modules/local/custom/calculate_seqstats/main.nf b/modules/local/custom/calculate_seqstats/main.nf
index 1975b26f..65286816 100644
--- a/modules/local/custom/calculate_seqstats/main.nf
+++ b/modules/local/custom/calculate_seqstats/main.nf
@@ -45,5 +45,3 @@ process CALCULATE_SEQSTATS {
     END_VERSIONS
     """
 }
-
-
diff --git a/workflows/multiplesequencealign.nf b/workflows/multiplesequencealign.nf
index d9202ef4..e42e10c4 100644
--- a/workflows/multiplesequencealign.nf
+++ b/workflows/multiplesequencealign.nf
@@ -426,5 +426,3 @@ workflow MULTIPLESEQUENCEALIGN{
     THE END
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 */
-
-

From c710379e469521141b46cd554d8a89c4d9d10023 Mon Sep 17 00:00:00 2001
From: Luisa Santus <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 12:34:21 +0200
Subject: [PATCH 07/58] Update main.nf
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
---
 main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/main.nf b/main.nf
index 515fcff0..65d08a70 100644
--- a/main.nf
+++ b/main.nf
@@ -68,7 +68,7 @@ workflow {
         args,
         params.outdir,
         params.input,
-        params.tools
+        params.tools,
         params.help,
         params.help_full,
         params.show_hidden

From a24cdeba4541e66ec8ce9f64fbbbc3cc7ed39d42 Mon Sep 17 00:00:00 2001
From: Luisa Santus <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 12:34:59 +0200
Subject: [PATCH 08/58] Update nextflow.config
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Co-authored-by: Júlia Mir Pedrol <mirp.julia@gmail.com>
---
 nextflow.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index 81d53e79..b0a7e882 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -147,7 +147,7 @@ profiles {
         wave.strategy           = 'conda,container'
     }
     emulate_amd64 {
-        docker.runOptions       = '-u $(id -u):$(id -g) --platform=linux/amd64'
+        docker.runOptions       = params.use_gpu ? '-u $(id -u):$(id -g) --platform=linux/amd64 --gpus all' : '-u $(id -u):$(id -g) --platform=linux/amd64'
     }
     singularity {
         singularity.enabled     = true

From f6d7726f82095bb9353425f170c3b21e63e3a315 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 12:45:04 +0200
Subject: [PATCH 09/58] fix

---
 .nf-test.log    |  2 ++
 main.nf         |  2 +-
 nextflow.config | 11 +++--------
 3 files changed, 6 insertions(+), 9 deletions(-)
 create mode 100644 .nf-test.log

diff --git a/.nf-test.log b/.nf-test.log
new file mode 100644
index 00000000..4cac59c5
--- /dev/null
+++ b/.nf-test.log
@@ -0,0 +1,2 @@
+Oct-17 12:27:53.509 [main] INFO  com.askimed.nf.test.App - nf-test 0.8.2
+Oct-17 12:27:53.522 [main] INFO  com.askimed.nf.test.App - Arguments: [version]
diff --git a/main.nf b/main.nf
index 515fcff0..65d08a70 100644
--- a/main.nf
+++ b/main.nf
@@ -68,7 +68,7 @@ workflow {
         args,
         params.outdir,
         params.input,
-        params.tools
+        params.tools,
         params.help,
         params.help_full,
         params.show_hidden
diff --git a/nextflow.config b/nextflow.config
index 81d53e79..bdaccf80 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -147,7 +147,7 @@ profiles {
         wave.strategy           = 'conda,container'
     }
     emulate_amd64 {
-        docker.runOptions       = '-u $(id -u):$(id -g) --platform=linux/amd64'
+        docker.runOptions       = params.use_gpu ? '-u $(id -u):$(id -g) --platform=linux/amd64 --gpus all' : '-u $(id -u):$(id -g) --platform=linux/amd64'
     }
     singularity {
         singularity.enabled     = true
@@ -220,17 +220,12 @@ profiles {
     easy_deploy             { includeConfig 'conf/easy_deploy.config'       }
 }
 
-// Set AWS client to anonymous when using the default igenomes_base
-// aws.client.anonymous = !params.igenomes_ignore && params.igenomes_base?.startsWith('s3://ngi-igenomes/igenomes/') ?: false
-// Load nf-core custom profiles from different institutions
 
 // If params.custom_config_base is set AND either the NXF_OFFLINE environment variable is not set or params.custom_config_base is a local path, the nfcore_custom.config file from the specified base path is included.
-// Load nf-core/multiplesequencealign custom profiles from different institutions.
-// includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
-
+includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
 
 // Load nf-core/multiplesequencealign custom profiles from different institutions.
-includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/multiplesequencealign.config" : "/dev/null"
+includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/pipeline/multiplesequencealign.config" : "/dev/null"
 
 // Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
 // Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled

From d96a0ad8e38b83891b081d71ca6d20c6ae5be17c Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 12:48:56 +0200
Subject: [PATCH 10/58] Fix template

---
 .nf-core.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.nf-core.yml b/.nf-core.yml
index 2dde97cc..aa722518 100644
--- a/.nf-core.yml
+++ b/.nf-core.yml
@@ -16,3 +16,6 @@ template:
   org: nf-core
   outdir: .
   version: 1.2.0dev
+  skip_features:
+    - fastqc
+    - igenomes

From 0b1dd747237f58a906af4aae383866add89041df Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 12:51:04 +0200
Subject: [PATCH 11/58] Fix prettier

---
 CHANGELOG.md                | 2 +-
 docs/usage/adding_a_tool.md | 3 ---
 package-lock.json           | 8 ++++----
 3 files changed, 5 insertions(+), 8 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 28ce8714..6d05b0c3 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.2.0dev 
+## v1.2.0dev
 
 ### Enhancements & fixes
 
diff --git a/docs/usage/adding_a_tool.md b/docs/usage/adding_a_tool.md
index 0d5dfb4c..759b1199 100644
--- a/docs/usage/adding_a_tool.md
+++ b/docs/usage/adding_a_tool.md
@@ -23,7 +23,6 @@ These steps will guide you to include a new MSA tool into the pipeline. Once don
 
 - [ ] **1.** **Fork** this repository and create a **new branch** (e.g. add-famsa)
 - [ ] **2. Include the module in the alignment subworkflow** (`subworkflows/local/align.nf`)
-
   - [ ] Install the module. E.g. with the command `nf-core modules install famsa/align`.
   - [ ] Include the module in `subworkflows/local/align.nf`, example [here](https://github.com/nf-core/multiplesequencealign/blob/4623d19f68b20f0ab16410eba496c329e4f31fa3/subworkflows/local/align.nf#L12).
   - [ ] Add a branch to the correct channel, depending on your tool input. Example for sequence-based tools [here](https://github.com/nf-core/multiplesequencealign/blob/4623d19f68b20f0ab16410eba496c329e4f31fa3/subworkflows/local/align.nf#L83) and structure-based [here](https://github.com/nf-core/multiplesequencealign/blob/4623d19f68b20f0ab16410eba496c329e4f31fa3/subworkflows/local/align.nf#L101).
@@ -32,7 +31,6 @@ These steps will guide you to include a new MSA tool into the pipeline. Once don
 
 - [ ] **3.** Add the aligner to the **aligner config** in [conf/modules.config](https://github.com/nf-core/multiplesequencealign/blob/dev/conf/modules.config). [Example](https://github.com/nf-core/multiplesequencealign/blob/4623d19f68b20f0ab16410eba496c329e4f31fa3/conf/modules.config#L125-L143).
 - [ ] **4. Update Docs**
-
   - [ ] Update docs/usage.md
   - [ ] Update CITATIONS.md
   - [ ] Update CHANGELOG.md
@@ -56,7 +54,6 @@ Adding a new evaluation mainly requires changes in the [evaluate.nf](https://git
 - [ ] **1.** **Fork** this repository and create a **new branch** (e.g. add-tcoffee-alncompare)
 
 - [ ] **2. Include the module in the evaluate subworkflow** (`subworkflows/local/evaluate.nf`)
-
   - [ ] Add a `calc_yourscore` parameter to the pipeline in `nextflow.config` and document it in `nextflow_schema.json`. The parameter can then be passed by the user to decide whether to run your evaluation workflow. [Example](https://github.com/nf-core/multiplesequencealign/blob/4623d19f68b20f0ab16410eba496c329e4f31fa3/nextflow.config#L32).
   - [ ] Add a codeblock to `subworkflows/local/evaluate` that calls the newly added evaluation module if the appropriate parameter is passed to the pipeline. [Example](https://github.com/nf-core/multiplesequencealign/blob/4623d19f68b20f0ab16410eba496c329e4f31fa3/subworkflows/local/evaluate.nf#L59-L77).
   - [ ] To ensure the called module produces an output file with the correct name for merging evaluation outputs, add a config option in `conf/modules.config`. [Example](https://github.com/nf-core/multiplesequencealign/blob/4623d19f68b20f0ab16410eba496c329e4f31fa3/conf/modules.config#L189-L192).
diff --git a/package-lock.json b/package-lock.json
index ac44a3c3..95873eaa 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -1,6 +1,6 @@
 {
-  "name": "multiplesequencealign",
-  "lockfileVersion": 3,
-  "requires": true,
-  "packages": {}
+    "name": "multiplesequencealign",
+    "lockfileVersion": 3,
+    "requires": true,
+    "packages": {}
 }

From fd4c04a0b6417e6673e247c52b0e77d5770865bc Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 13:03:17 +0200
Subject: [PATCH 12/58] Add snapshot version

---
 tests/main.nf.test | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/tests/main.nf.test b/tests/main.nf.test
index 113bda85..0cc5c72c 100644
--- a/tests/main.nf.test
+++ b/tests/main.nf.test
@@ -18,7 +18,13 @@ nextflow_pipeline {
         }
 
         then {
-            assert workflow.success
+            assertAll(
+                { assert workflow.success },
+                // Capture versions snapshot
+                { assert snapshot(
+                    workflow.out.versions
+                ).match() }
+            )
         }
     }
 }

From 2c68a852daad8a5ff1250b590096e2d8548ed458 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 16:15:28 +0200
Subject: [PATCH 13/58] Update modules and add meta.yml

---
 .nf-test.log                                  |   56 +-
 .../769ef9cb3e09a5479af8ae24f9f6ea54.json     |  158 ++
 .../nft-utils/0.0.3/nft-utils-0.0.3.jar       |  Bin 0 -> 349612 bytes
 .../meta/nextflow.log                         |   16 +
 .../meta/params.json                          |    1 +
 .../meta/std.err                              |    0
 .../meta/std.out                              |    0
 .../meta/nextflow.log                         | 1043 +++++++++++++
 .../meta/params.json                          |    1 +
 .../meta/std.err                              |    1 +
 .../meta/std.out                              |   50 +
 .../meta/trace.csv                            |  100 ++
 ...rgs-default_REGRESSIVE-args-default.aln.gz |  Bin 0 -> 808 bytes
 ...pgma_-medoidtree_FAMSA-args-default.aln.gz |  Bin 0 -> 821 bytes
 ...MSA-args-default_MAGUS-args-default.aln.gz |  Bin 0 -> 802 bytes
 ...default_REGRESSIVE-args-default_tcs.scores |    2 +
 ...gs-default_REGRESSIVE-args-default_tcs.tcs |   78 +
 ..._-medoidtree_FAMSA-args-default_tcs.scores |    2 +
 ...gma_-medoidtree_FAMSA-args-default_tcs.tcs |   78 +
 ...args-default_MAGUS-args-default_tcs.scores |    2 +
 ...SA-args-default_MAGUS-args-default_tcs.tcs |   78 +
 ...2footprint_report_2025-10-17_15-37-58.html | 1385 +++++++++++++++++
 ...2footprint_summary_2025-10-17_15-37-58.txt |   29 +
 ...co2footprint_trace_2025-10-17_15-37-58.txt |  100 ++
 ...plesequencealign_software_mqc_versions.yml |   67 +
 .../params_2025-10-17_15-38-07.json           |   57 +
 .../stats/sequences/perc_sim/toxin-ref.txt    |  426 +++++
 .../sequences/seqstats/toxin-ref_seqstats.csv |   21 +
 .../toxin-ref_CLUSTALO-args-default.dnd       |   78 +
 ...n-ref_FAMSA-args--gt_upgma_-medoidtree.dnd |    1 +
 .../toxin-ref_FAMSA-args-default.dnd          |    1 +
 .../toxin-ref_MAFFT-args-default.dnd          |   41 +
 .../meta/nextflow.log                         |  759 +++++++++
 .../meta/params.json                          |    1 +
 .../meta/std.err                              |    1 +
 .../meta/std.out                              |   29 +
 .../meta/trace.csv                            |   12 +
 ...2footprint_report_2025-10-17_13-11-11.html | 1364 ++++++++++++++++
 ...2footprint_summary_2025-10-17_13-11-11.txt |   29 +
 ...co2footprint_trace_2025-10-17_13-11-11.txt |   12 +
 ...plesequencealign_software_mqc_versions.yml |    7 +
 .../params_2025-10-17_13-11-21.json           |   57 +
 .../sequences/seqstats/toxin-ref_seqstats.csv |   21 +
 .../toxin-ref_CLUSTALO-args-default.dnd       |   78 +
 modules.json                                  |   61 +-
 modules/nf-core/clustalo/align/meta.yml       |   81 +-
 modules/nf-core/clustalo/align/tests/tags.yml |    2 -
 modules/nf-core/clustalo/guidetree/meta.yml   |   21 +-
 .../nf-core/clustalo/guidetree/tests/tags.yml |    2 -
 modules/nf-core/csvtk/concat/meta.yml         |   38 +-
 modules/nf-core/csvtk/concat/tests/tags.yml   |    2 -
 modules/nf-core/csvtk/join/csvtk-join.diff    |    5 +-
 modules/nf-core/csvtk/join/meta.yml           |   22 +-
 modules/nf-core/csvtk/join/tests/tags.yml     |    2 -
 modules/nf-core/famsa/align/environment.yml   |    2 +-
 modules/nf-core/famsa/align/main.nf           |    4 +-
 modules/nf-core/famsa/align/meta.yml          |   35 +-
 .../nf-core/famsa/align/tests/main.nf.test    |   47 +-
 .../famsa/align/tests/main.nf.test.snap       |  160 +-
 modules/nf-core/famsa/align/tests/tags.yml    |    2 -
 modules/nf-core/famsa/guidetree/meta.yml      |   21 +-
 .../nf-core/famsa/guidetree/tests/tags.yml    |    2 -
 modules/nf-core/fastavalidator/meta.yml       |   23 +-
 modules/nf-core/fastavalidator/tests/tags.yml |    2 -
 modules/nf-core/foldmason/createdb/meta.yml   |   20 +-
 .../foldmason/easymsa/foldmason-easymsa.diff  |    7 +-
 modules/nf-core/foldmason/easymsa/meta.yml    |   44 +-
 .../nf-core/foldmason/easymsa/tests/tags.yml  |    2 -
 .../nf-core/foldmason/msa2lddtreport/meta.yml |   23 +-
 .../nf-core/kalign/align/kalign-align.diff    |    5 +-
 modules/nf-core/kalign/align/meta.yml         |   37 +-
 modules/nf-core/kalign/align/tests/tags.yml   |    2 -
 modules/nf-core/learnmsa/align/meta.yml       |   23 +-
 modules/nf-core/learnmsa/align/tests/tags.yml |    2 -
 modules/nf-core/mafft/align/meta.yml          |   48 +-
 modules/nf-core/mafft/align/tests/tags.yml    |    2 -
 modules/nf-core/mafft/guidetree/meta.yml      |   21 +-
 modules/nf-core/magus/align/meta.yml          |   41 +-
 modules/nf-core/magus/align/tests/tags.yml    |    2 -
 modules/nf-core/mtmalign/align/meta.yml       |   39 +-
 modules/nf-core/mtmalign/align/tests/tags.yml |    2 -
 modules/nf-core/muscle5/super5/meta.yml       |   37 +-
 .../nf-core/muscle5/super5/tests/main.nf.test |   18 +-
 .../muscle5/super5/tests/main.nf.test.snap    |   27 +-
 modules/nf-core/muscle5/super5/tests/tags.yml |    2 -
 modules/nf-core/pigz/compress/main.nf         |    4 +-
 modules/nf-core/pigz/compress/meta.yml        |   19 +-
 modules/nf-core/pigz/compress/tests/tags.yml  |    2 -
 modules/nf-core/pigz/uncompress/main.nf       |    6 +-
 modules/nf-core/pigz/uncompress/meta.yml      |   19 +-
 .../pigz/uncompress/tests/main.nf.test        |   25 +
 .../pigz/uncompress/tests/main.nf.test.snap   |   43 +-
 .../nf-core/pigz/uncompress/tests/tags.yml    |    2 -
 modules/nf-core/tcoffee/align/main.nf         |    2 +-
 modules/nf-core/tcoffee/align/meta.yml        |   46 +-
 modules/nf-core/tcoffee/align/tests/tags.yml  |    2 -
 modules/nf-core/tcoffee/alncompare/meta.yml   |   18 +-
 modules/nf-core/tcoffee/consensus/meta.yml    |   38 +-
 .../tcoffee/consensus/tests/main.nf.test.snap |   16 +
 .../nf-core/tcoffee/consensus/tests/tags.yml  |    2 -
 .../nf-core/tcoffee/extractfrompdb/meta.yml   |   18 +-
 .../tcoffee-extractfrompdb.diff               |    4 +-
 modules/nf-core/tcoffee/irmsd/meta.yml        |   27 +-
 modules/nf-core/tcoffee/irmsd/tests/tags.yml  |    2 -
 modules/nf-core/tcoffee/regressive/meta.yml   |   34 +-
 modules/nf-core/tcoffee/seqreformat/meta.yml  |   18 +-
 .../tcoffee/seqreformat/tests/tags.yml        |    2 -
 modules/nf-core/tcoffee/tcs/meta.yml          |   28 +-
 modules/nf-core/tcoffee/tcs/tests/tags.yml    |    2 -
 modules/nf-core/untar/meta.yml                |   27 +-
 modules/nf-core/untar/tests/tags.yml          |    2 -
 modules/nf-core/upp/align/meta.yml            |   27 +-
 modules/nf-core/upp/align/tests/tags.yml      |    2 -
 subworkflows/local/ALIGN/main.nf              |    1 -
 subworkflows/local/ALIGN/meta.yml             |    0
 subworkflows/local/COMPUTE_TREES/main.nf      |    1 -
 subworkflows/local/COMPUTE_TREES/meta.yml     |   52 +
 tests/default.nf.test                         |    4 +-
 tests/default.nf.test.snap                    |  456 ++++++
 tests/main.nf.test                            |   30 -
 120 files changed, 7649 insertions(+), 512 deletions(-)
 create mode 100644 .nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json
 create mode 100644 .nf-test/plugins/nft-utils/0.0.3/nft-utils-0.0.3.jar
 create mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log
 create mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json
 create mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.err
 create mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.out
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd
 create mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
 create mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
 delete mode 100644 modules/nf-core/clustalo/align/tests/tags.yml
 delete mode 100644 modules/nf-core/clustalo/guidetree/tests/tags.yml
 delete mode 100644 modules/nf-core/csvtk/concat/tests/tags.yml
 delete mode 100644 modules/nf-core/csvtk/join/tests/tags.yml
 delete mode 100644 modules/nf-core/famsa/align/tests/tags.yml
 delete mode 100644 modules/nf-core/famsa/guidetree/tests/tags.yml
 delete mode 100644 modules/nf-core/fastavalidator/tests/tags.yml
 delete mode 100644 modules/nf-core/foldmason/easymsa/tests/tags.yml
 delete mode 100644 modules/nf-core/kalign/align/tests/tags.yml
 delete mode 100644 modules/nf-core/learnmsa/align/tests/tags.yml
 delete mode 100644 modules/nf-core/mafft/align/tests/tags.yml
 delete mode 100644 modules/nf-core/magus/align/tests/tags.yml
 delete mode 100644 modules/nf-core/mtmalign/align/tests/tags.yml
 delete mode 100644 modules/nf-core/muscle5/super5/tests/tags.yml
 delete mode 100644 modules/nf-core/pigz/compress/tests/tags.yml
 delete mode 100644 modules/nf-core/pigz/uncompress/tests/tags.yml
 delete mode 100644 modules/nf-core/tcoffee/align/tests/tags.yml
 delete mode 100644 modules/nf-core/tcoffee/consensus/tests/tags.yml
 delete mode 100644 modules/nf-core/tcoffee/irmsd/tests/tags.yml
 delete mode 100644 modules/nf-core/tcoffee/seqreformat/tests/tags.yml
 delete mode 100644 modules/nf-core/tcoffee/tcs/tests/tags.yml
 delete mode 100644 modules/nf-core/untar/tests/tags.yml
 delete mode 100644 modules/nf-core/upp/align/tests/tags.yml
 create mode 100644 subworkflows/local/ALIGN/meta.yml
 create mode 100644 subworkflows/local/COMPUTE_TREES/meta.yml
 create mode 100644 tests/default.nf.test.snap
 delete mode 100644 tests/main.nf.test

diff --git a/.nf-test.log b/.nf-test.log
index 4cac59c5..dc1029ed 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,2 +1,54 @@
-Oct-17 12:27:53.509 [main] INFO  com.askimed.nf.test.App - nf-test 0.8.2
-Oct-17 12:27:53.522 [main] INFO  com.askimed.nf.test.App - Arguments: [version]
+Oct-17 15:37:52.569 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Oct-17 15:37:52.589 [main] INFO  com.askimed.nf.test.App - Arguments: [test, --profile, test,docker, --update-snapshot]
+Oct-17 15:37:53.577 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.04.6
+Oct-17 15:37:53.579 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Oct-17 15:37:54.224 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.085 sec
+Oct-17 15:37:54.225 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Oct-17 15:37:54.225 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Oct-17 15:37:54.393 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Oct-17 15:37:54.394 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Oct-17 15:37:54.394 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Oct-17 15:37:54.394 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '3b90429f: -profile test'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Oct-17 15:41:32.089 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Oct-17 15:41:32.168 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test' do not match. Update snapshots flag set.
+Oct-17 15:41:32.169 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test'
+Oct-17 15:41:32.212 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Oct-17 15:41:32.213 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '3b90429f: -profile test' finished. status: FAILED
+org.codehaus.groovy.runtime.powerassert.PowerAssertionError: 1 of 2 assertions failed
+	at com.askimed.nf.test.lang.extensions.GlobalMethods.assertAll(GlobalMethods.java:48)
+	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
+	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
+	at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107)
+	at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
+	at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.invoke(StaticMetaMethodSite.java:44)
+	at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.callStatic(StaticMetaMethodSite.java:100)
+	at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallStatic(CallSiteArray.java:55)
+	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:217)
+	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:240)
+	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test:20)
+	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test)
+	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
+	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
+	at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107)
+	at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
+	at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:274)
+	at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1030)
+	at groovy.lang.Closure.call(Closure.java:427)
+	at groovy.lang.Closure.call(Closure.java:406)
+	at com.askimed.nf.test.lang.TestCode.execute(TestCode.java:16)
+	at com.askimed.nf.test.lang.pipeline.PipelineTest.execute(PipelineTest.java:135)
+	at com.askimed.nf.test.core.TestExecutionEngine.execute(TestExecutionEngine.java:172)
+	at com.askimed.nf.test.commands.RunTestsCommand.execute(RunTestsCommand.java:322)
+	at com.askimed.nf.test.commands.AbstractCommand.call(AbstractCommand.java:43)
+	at com.askimed.nf.test.commands.AbstractCommand.call(AbstractCommand.java:18)
+	at picocli.CommandLine.executeUserObject(CommandLine.java:1953)
+	at picocli.CommandLine.access$1300(CommandLine.java:145)
+	at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2352)
+	at picocli.CommandLine$RunLast.handle(CommandLine.java:2346)
+	at picocli.CommandLine$RunLast.handle(CommandLine.java:2311)
+	at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
+	at picocli.CommandLine.execute(CommandLine.java:2078)
+	at com.askimed.nf.test.App.run(App.java:39)
+	at com.askimed.nf.test.App.main(App.java:46)
+Oct-17 15:41:32.224 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: true
+Oct-17 15:41:32.228 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 1 tests failed. Done!
diff --git a/.nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json b/.nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json
new file mode 100644
index 00000000..3bea5344
--- /dev/null
+++ b/.nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json
@@ -0,0 +1,158 @@
+[{
+  "id": "nft-fasta",
+  "latest": "1.0.0",
+  "url": "https://github.com/askimed/nft-fasta",
+  "github": "askimed/nft-fasta",
+  "description": "Provides support for FASTA files.",
+  "author": "Lukas Forer",
+  "keywords": [],
+  "releases": [{
+    "version": "1.0.0",
+    "url": "https://github.com/askimed/nft-fasta/releases/download/v1.0.0/nft-fasta-1.0.0.jar"
+  }]
+},{
+  "id": "nft-vcf",
+  "latest": "1.0.7",
+  "url": "https://github.com/seppinho/nft-vcf",
+  "github": "seppinho/nft-vcf",
+  "description": "Provides support for VCF files.",
+  "author": "Sebastian Schönherr",
+  "keywords": [],
+  "releases": [{
+    "version": "1.0.2",
+    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.2/nft-vcf-1.0.2-jar-with-dependencies.jar"
+  },{
+    "version": "1.0.4",
+    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.4/nft-vcf-1.0.4.jar"
+  },{
+    "version": "1.0.5",
+    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.5/nft-vcf-1.0.5.jar"
+  },{
+    "version": "1.0.6",
+    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.6/nft-vcf-1.0.6.jar"
+  },{
+    "version": "1.0.7",
+    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.7/nft-vcf-1.0.7.jar"
+  }]
+},{
+  "id": "nft-bam",
+  "latest": "0.6.0",
+  "url": "https://nvnieuwk.github.io/nft-bam",
+  "github": "nvnieuwk/nft-bam",
+  "description": "Provides some helper functionality for handling SAM/BAM/CRAM files during tests",
+  "author": "Nicolas Vannieuwkerke",
+  "keywords": [],
+  "releases": [{
+    "version": "0.1.0",
+    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.1.0/nft-bam-0.1.0.jar"
+  },{
+    "version": "0.1.1",
+    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.1.1/nft-bam-0.1.1.jar"
+  },{
+    "version": "0.2.0",
+    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.2.0/nft-bam-0.2.0.jar"
+  },{
+    "version": "0.3.0",
+    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.3.0/nft-bam-0.3.0.jar"
+  },{
+    "version": "0.4.0",
+    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.4.0/nft-bam-0.4.0.jar"
+  },{
+    "version": "0.5.0",
+    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.5.0/nft-bam-0.5.0.jar"
+  },{
+    "version": "0.6.0",
+    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.6.0/nft-bam-0.6.0.jar"
+  }]
+},{
+  "id": "nft-compress",
+  "latest": "0.1.0",
+  "url": "https://github.com/lukfor/nft-compress",
+  "github": "lukfor/nft-compress",
+  "description": "Provides support for ZIP files.",
+  "author": "Lukas Forer",
+  "keywords": [],
+  "releases": [{
+    "version": "0.1.0",
+    "url": "https://github.com/lukfor/nft-compress/releases/download/0.1.0/nft-compress-0.1.0.jar"
+  }]
+},{
+  "id": "nft-csv",
+  "latest": "0.1.0",
+  "url": "https://github.com/lukfor/nft-csv",
+  "github": "lukfor/nft-csv",
+  "description": "Provides support for CSV files.",
+  "author": "Lukas Forer",
+  "keywords": [],
+  "releases": [{
+    "version": "0.1.0",
+    "url": "https://github.com/lukfor/nft-csv/releases/download/0.1.0/nft-csv-0.1.0.jar"
+  }]
+},{
+  "id": "nft-utils",
+  "latest": "0.0.7",
+  "url": "https://github.com/nf-core/nft-utils",
+  "github": "nf-core/nft-utils",
+  "description": "nf-test utility functions for Nextflow pipelines.",
+  "author": "nf-core",
+  "keywords": [],
+  "releases": [{
+    "version": "0.0.1",
+    "url": "https://github.com/nf-core/nft-utils/releases/download/0.0.1/nft-utils-0.0.1.jar"
+  },{
+    "version": "0.0.2",
+    "url": "https://github.com/nf-core/nft-utils/releases/download/0.0.2/nft-utils-0.0.2.jar"
+  },{
+    "version": "0.0.3",
+    "url": "https://github.com/nf-core/nft-utils/releases/download/0.0.3/nft-utils-0.0.3.jar"
+  },{
+    "version": "0.0.4",
+    "url": "https://github.com/nf-core/nft-utils/releases/download/0.0.4/nft-utils-0.0.4.jar"
+  },{
+    "version": "0.0.5",
+    "url": "https://github.com/nf-core/nft-utils/releases/download/0.0.5/nft-utils-0.0.5.jar"
+  },{
+    "version": "0.0.6",
+    "url": "https://github.com/nf-core/nft-utils/releases/download/0.0.6/nft-utils-0.0.6.jar"
+  },{
+    "version": "0.0.7",
+    "url": "https://github.com/nf-core/nft-utils/releases/download/0.0.7/nft-utils-0.0.7.jar"
+  }]
+},{
+  "id": "nft-fastq",
+  "latest": "0.0.1",
+  "url": "https://github.com/lukfor/nft-fastq",
+  "github": "lukfor/nft-fastq",
+  "description": "Provides support for FASTQ files.",
+  "author": "Lukas Forer",
+  "keywords": [],
+  "releases": [{
+    "version": "0.0.1",
+    "url": "https://github.com/lukfor/nft-fastq/releases/download/v0.0.1/nft-fastq-0.0.1-all.jar"
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+  "keywords": [],
+  "releases": [{
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+}
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diff --git a/.nf-test/plugins/nft-utils/0.0.3/nft-utils-0.0.3.jar b/.nf-test/plugins/nft-utils/0.0.3/nft-utils-0.0.3.jar
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diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log
new file mode 100644
index 00000000..f277b1f9
--- /dev/null
+++ b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log
@@ -0,0 +1,16 @@
+Oct-17 15:37:27.022 [main] DEBUG nextflow.cli.Launcher - $> nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json -ansi-log false -profile test,docker -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/work
+Oct-17 15:37:27.127 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 25.04.6
+Oct-17 15:37:27.160 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/luisasantus/.nextflow/plugins; core-plugins: nf-amazon@2.15.0,nf-azure@1.16.0,nf-cloudcache@0.4.3,nf-codecommit@0.2.3,nf-console@1.2.1,nf-google@1.21.1,nf-k8s@1.0.0,nf-tower@1.11.4,nf-wave@1.12.1
+Oct-17 15:37:27.194 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
+Oct-17 15:37:27.195 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
+Oct-17 15:37:27.201 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
+Oct-17 15:37:27.218 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
+Oct-17 15:37:27.250 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:27.258 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:27.258 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+Oct-17 15:37:27.260 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:27.261 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:27.261 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+Oct-17 15:37:27.318 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /home/luisasantus/.nextflow/secrets/store.json
+Oct-17 15:37:27.325 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@f9b5552] - activable => nextflow.secret.LocalSecretsProvider@f9b5552
+Oct-17 15:37:27.360 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json
new file mode 100644
index 00000000..31582cef
--- /dev/null
+++ b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json
@@ -0,0 +1 @@
+{"outdir":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/output"}
\ No newline at end of file
diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.err b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.err
new file mode 100644
index 00000000..e69de29b
diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.out b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.out
new file mode 100644
index 00000000..e69de29b
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log
new file mode 100644
index 00000000..3eb0b1ea
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log
@@ -0,0 +1,1043 @@
+Oct-17 15:37:55.629 [main] DEBUG nextflow.cli.Launcher - $> nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json -ansi-log false -profile test,docker -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work
+Oct-17 15:37:55.724 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 25.04.6
+Oct-17 15:37:55.756 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/luisasantus/.nextflow/plugins; core-plugins: nf-amazon@2.15.0,nf-azure@1.16.0,nf-cloudcache@0.4.3,nf-codecommit@0.2.3,nf-console@1.2.1,nf-google@1.21.1,nf-k8s@1.0.0,nf-tower@1.11.4,nf-wave@1.12.1
+Oct-17 15:37:55.788 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
+Oct-17 15:37:55.789 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
+Oct-17 15:37:55.793 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
+Oct-17 15:37:55.813 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
+Oct-17 15:37:55.854 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:55.859 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:55.859 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+Oct-17 15:37:55.861 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:55.861 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 15:37:55.862 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+Oct-17 15:37:55.906 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /home/luisasantus/.nextflow/secrets/store.json
+Oct-17 15:37:55.911 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@f9b5552] - activable => nextflow.secret.LocalSecretsProvider@f9b5552
+Oct-17 15:37:55.944 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
+Oct-17 15:37:58.604 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
+Oct-17 15:37:59.194 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
+Oct-17 15:37:59.239 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [bih, cfc_dev, uzl_omics, ifb_core, embl_hd, denbi_qbic, alice, mjolnir_globe, uppmax, giga, incliva, ilifu, ki_luria, uge, icr_alma, rosalind_uge, test_conda, lugh, mccleary, unibe_ibu, vai, czbiohub_aws, jax, roslin, tes, test_tiny, scw, unc_longleaf, tigem, tubingen_apg, apollo, ipop_up, vsc_calcua, pdc_kth, ceci_nic5, ccga_cau, humantechnopole, stjude, daisybio, eddie, medair, biowulf, apptainer, bi, bigpurple, adcra, cedars, pawsey_setonix, vsc_kul_uhasselt, pawsey_nimbus, ucl_myriad, utd_ganymede, charliecloud, fred_hutch, seattlechildrens, icr_davros, ceres, munin, rosalind, hasta, cfc, emulate_amd64, uzh, shu_bmrc, ebi_codon_slurm, ebc, ccga_dx, crick, test_pdb, ku_sund_danhead, marvin, shifter, biohpc_gen, mana, mamba, york_viking, unc_lccc, wehi, test_no_sheet, awsbatch, wustl_htcf, arcc, ceci_dragon2, imperial, maestro, software_license, cannon, genotoul, nci_gadi, abims, eva_grace, janelia, nu_genomics, googlebatch, oist, sahmri, kaust, alliance_canada, arm64, mpcdf, leicester, vsc_ugent, create, sage, cambridge, jex, podman, ebi_codon, cheaha, xanadu, nyu_hpc, test, marjorie, computerome, ucd_sonic, gpu, seg_globe, mssm, sanger, dkfz, bluebear, pasteur, einstein, ethz_euler, m3c, test_full, imb, ucl_cscluster, tuos_stanage, azurebatch, hki, seadragon, crukmi, csiro_petrichor, qmul_apocrita, wave, docker, engaging, gis, hypatia, psmn, eva, unity, cropdiversityhpc, nygc, easy_deploy, fgcz, conda, crg, singularity, mpcdf_viper, pe2, dirac, self_hosted_runner, tufts, uw_hyak_pedslabs, binac2, debug, genouest, cbe, unsw_katana, utd_juno, phoenix, seawulf, uod_hpc, fub_curta, lovelace, uct_hpc, aws_tower, binac, fsu_draco]
+Oct-17 15:37:59.290 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default
+Oct-17 15:37:59.312 [main] INFO  nextflow.cli.CmdRun - Launching `/home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf` [ecstatic_pesquet] DSL2 - revision: af24e956f9
+Oct-17 15:37:59.313 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins declared=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2]
+Oct-17 15:37:59.315 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
+Oct-17 15:37:59.317 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2, nf-tower@1.11.4]
+Oct-17 15:37:59.320 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-schema version: 2.5.1
+Oct-17 15:37:59.335 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-schema@2.5.1' resolved
+Oct-17 15:37:59.335 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-schema@2.5.1'
+Oct-17 15:37:59.344 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-schema@2.5.1
+Oct-17 15:37:59.344 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-co2footprint version: 1.0.0
+Oct-17 15:37:59.348 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-co2footprint@1.0.0' resolved
+Oct-17 15:37:59.349 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-co2footprint@1.0.0'
+Oct-17 15:37:59.351 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-co2footprint@1.0.0
+Oct-17 15:37:59.352 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-prov version: 1.2.2
+Oct-17 15:37:59.354 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-prov@1.2.2' resolved
+Oct-17 15:37:59.354 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-prov@1.2.2'
+Oct-17 15:37:59.357 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-prov@1.2.2
+Oct-17 15:37:59.357 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-tower version: 1.11.4
+Oct-17 15:37:59.359 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-tower@1.11.4' resolved
+Oct-17 15:37:59.360 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-tower@1.11.4'
+Oct-17 15:37:59.375 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-tower@1.11.4
+Oct-17 15:37:59.445 [main] DEBUG nextflow.Session - Session UUID: fbc329ea-376b-4651-a144-fe8ddfd305b1
+Oct-17 15:37:59.446 [main] DEBUG nextflow.Session - Run name: ecstatic_pesquet
+Oct-17 15:37:59.446 [main] DEBUG nextflow.Session - Executor pool size: 8
+Oct-17 15:37:59.459 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null
+Oct-17 15:37:59.467 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
+Oct-17 15:37:59.529 [main] DEBUG nextflow.cli.CmdRun - 
+  Version: 25.04.6 build 5954
+  Created: 01-07-2025 11:27 UTC (13:27 CEST)
+  System: Linux 5.15.0-134-generic
+  Runtime: Groovy 4.0.26 on OpenJDK 64-Bit Server VM 21.0.7+6-Ubuntu-0ubuntu120.04
+  Encoding: UTF-8 (UTF-8)
+  Process: 3939830@luisasantus-HP-EliteDesk-800-G5-TWR [127.0.1.1]
+  CPUs: 8 - Mem: 31.1 GB (532.3 MB) - Swap: 2 GB (0)
+Oct-17 15:37:59.584 [main] DEBUG nextflow.Session - Work-dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work [ext2/ext3]
+Oct-17 15:37:59.666 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
+Oct-17 15:37:59.700 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
+Oct-17 15:37:59.719 [main] DEBUG nextflow.Session - Observer factory: CO2FootprintFactory
+Oct-17 15:37:59.776 [main] INFO  n.co2footprint.CO2FootprintFactory - nf-co2footprint plugin  ~  version 1.0.0
+Oct-17 15:37:59.776 [main] INFO  n.co2footprint.CO2FootprintFactory - 🔕 Repeated task-specific messages (🔁) are only logged once in the console. Further occurrences are logged at DEBUG level, appearing only in the `.nextflow.log` file.
+Oct-17 15:38:01.072 [main] WARN  n.c.DataContainers.CIValueComputer - No location provided. Attempting to retrieve GLOBAL carbon intensity value.
+Oct-17 15:38:01.077 [main] INFO  n.c.DataContainers.CIDataMatrix - Using carbon intensity for GLOBAL from fallback table: 480.0 gCO₂eq/kWh.
+Oct-17 15:38:01.078 [main] DEBUG n.co2footprint.CO2FootprintConfig - No executor found in config under process.executor.
+Oct-17 15:38:01.106 [main] DEBUG nextflow.Session - Observer factory: ProvObserverFactory
+Oct-17 15:38:01.153 [main] DEBUG nextflow.Session - Observer factory: TowerFactory
+Oct-17 15:38:01.160 [main] DEBUG nextflow.Session - Observer factory (v2): LinObserverFactory
+Oct-17 15:38:01.168 [main] DEBUG nextflow.Session - Observer factory (v2): ValidationObserverFactory
+Oct-17 15:38:01.224 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
+Oct-17 15:38:01.251 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 9; maxThreads: 1000
+Oct-17 15:38:01.342 [main] DEBUG nextflow.Session - Session start
+Oct-17 15:38:01.345 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
+Oct-17 15:38:01.347 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow started -- co2e outputs: [co2eTrace:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt, co2eSummary:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt, co2eReport:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html]
+Oct-17 15:38:01.539 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
+Oct-17 15:38:02.171 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
+Oct-17 15:38:02.188 [main] DEBUG n.validation.config.ValidationConfig - Set `validation.monochromeLogs` to true due to the ANSI log settings.
+Oct-17 15:38:02.192 [main] DEBUG n.validation.config.ValidationConfig - Added the following parameters to the ignored parameters: [genomes, fasta, igenomes_base, genome]
+Oct-17 15:38:03.045 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
+Oct-17 15:38:03.046 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
+Oct-17 15:38:03.047 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
+Oct-17 15:38:03.053 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
+Oct-17 15:38:03.055 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
+Oct-17 15:38:07.059 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
+Oct-17 15:38:07.060 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
+Oct-17 15:38:07.061 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
+Oct-17 15:38:07.063 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
+Oct-17 15:38:07.064 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
+Oct-17 15:38:07.316 [main] INFO  nextflow.Nextflow - 
+------------------------------------------------------
+                                        ,--./,-.
+        ___     __   __   __   ___     /,-._.--~'
+  |\ | |__  __ /  ` /  \ |__) |__         }  {
+  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
+                                        `._,._,'
+  nf-core/multiplesequencealign 1.2.0dev
+------------------------------------------------------
+
+Oct-17 15:38:07.351 [main] INFO  nextflow.Nextflow - Basic Input/output options
+  input                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv
+  outdir                      : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output
+
+Tools input options
+  tools                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv
+
+Align options
+  build_consensus             : true
+
+Stats options
+  calc_sim                    : true
+  calc_seq_stats              : true
+  extract_plddt               : true
+
+Eval options
+  calc_irmsd                  : true
+  calc_tcs                    : true
+
+Reports options
+  shiny_app                   : /home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app
+
+Institutional config options
+  config_profile_name         : Test profile
+  config_profile_description  : Minimal test dataset to check pipeline function
+
+Generic options
+  pipelines_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign
+  trace_report_suffix         : 2025-10-17_15-37-58
+
+Core Nextflow options
+  runName                     : ecstatic_pesquet
+  containerEngine             : docker
+  launchDir                   : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6
+  workDir                     : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work
+  projectDir                  : /home/luisasantus/Desktop/multiplesequencealign
+  userName                    : luisasantus
+  profile                     : test,docker
+  configFiles                 : /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+
+!! Only displaying parameters that differ from the pipeline defaults !!
+------------------------------------------------------
+Oct-17 15:38:07.352 [main] INFO  nextflow.Nextflow - 
+* The pipeline
+    https://doi.org/10.5281/zenodo.13889386
+
+* The nf-core framework
+    https://doi.org/10.1038/s41587-020-0439-x
+
+* Software dependencies
+    https://github.com/nf-core/multiplesequencealign/blob/master/CITATIONS.md
+
+Oct-17 15:38:07.358 [main] DEBUG n.v.parameters.ParameterValidator - Starting parameters validation
+Oct-17 15:38:07.753 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv
+Oct-17 15:38:09.486 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv' passed!
+Oct-17 15:38:09.866 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv
+Oct-17 15:38:09.934 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv' passed!
+Oct-17 15:38:10.080 [main] WARN  n.v.logging.ValidationLogger - The following invalid input values have been detected:
+
+* --modules_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/
+
+
+Oct-17 15:38:10.083 [main] DEBUG n.v.parameters.ParameterValidator - Finishing parameters validation
+Oct-17 15:38:11.312 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 15:38:11.317 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 15:38:11.319 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 15:38:11.327 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.327 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.337 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
+Oct-17 15:38:11.344 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=8; memory=31.1 GB; capacity=8; pollInterval=100ms; dumpInterval=5m
+Oct-17 15:38:11.347 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
+Oct-17 15:38:11.375 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.424 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 15:38:11.426 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 15:38:11.428 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 15:38:11.429 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.430 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.432 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.448 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 15:38:11.451 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 15:38:11.452 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 15:38:11.456 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.456 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.457 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.474 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 15:38:11.475 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 15:38:11.475 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 15:38:11.477 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.477 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.477 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.512 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 15:38:11.513 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CREATE_TEMPLATE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 15:38:11.516 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 15:38:11.518 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 15:38:11.521 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.521 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.522 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.561 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 15:38:11.563 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 15:38:11.564 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_SEQREFORMAT_SIM` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 15:38:11.569 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 15:38:11.571 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 15:38:11.574 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.574 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.575 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.591 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 15:38:11.592 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 15:38:11.593 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 15:38:11.594 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.595 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.595 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.620 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 15:38:11.621 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 15:38:11.622 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SIMSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 15:38:11.623 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 15:38:11.624 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 15:38:11.626 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.626 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.627 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.643 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 15:38:11.643 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALCULATE_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 15:38:11.644 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 15:38:11.645 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 15:38:11.648 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.649 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.650 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.667 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 15:38:11.668 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 15:38:11.669 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 15:38:11.670 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 15:38:11.670 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 15:38:11.673 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.673 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.674 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 15:38:11.691 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:EXTRACT_PLDDT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 15:38:11.692 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 15:38:11.692 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 15:38:11.694 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.694 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.695 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.714 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 15:38:11.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 15:38:11.718 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 15:38:11.719 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 15:38:11.721 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.721 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.722 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.758 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 15:38:11.760 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 15:38:11.761 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 15:38:11.762 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 15:38:11.762 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 15:38:11.765 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.766 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.767 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 15:38:11.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 15:38:11.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 15:38:11.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 15:38:11.811 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.811 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.811 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.826 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 15:38:11.826 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 15:38:11.827 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 15:38:11.828 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 15:38:11.829 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.829 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.830 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 15:38:11.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 15:38:11.847 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 15:38:11.848 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 15:38:11.850 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.851 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.852 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.939 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 15:38:11.940 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 15:38:11.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 15:38:11.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 15:38:11.943 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.943 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.943 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:11.968 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 15:38:11.969 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 15:38:11.970 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 15:38:11.971 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 15:38:11.972 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:11.973 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:11.974 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.002 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 15:38:12.003 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 15:38:12.004 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 15:38:12.005 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 15:38:12.008 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.008 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.009 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.029 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 15:38:12.030 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:LEARNMSA_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 15:38:12.031 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 15:38:12.034 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 15:38:12.037 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.038 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.039 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.064 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 15:38:12.066 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 15:38:12.067 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 15:38:12.068 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 15:38:12.071 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.071 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.072 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.094 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 15:38:12.095 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 15:38:12.095 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 15:38:12.096 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 15:38:12.100 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.100 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.101 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.134 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 15:38:12.135 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 15:38:12.136 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 15:38:12.136 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 15:38:12.139 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 15:38:12.141 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.141 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.142 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.176 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 15:38:12.177 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 15:38:12.178 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 15:38:12.178 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 15:38:12.184 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.184 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.186 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.213 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 15:38:12.215 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 15:38:12.216 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 15:38:12.217 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 15:38:12.218 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 15:38:12.220 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.220 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.220 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.241 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 15:38:12.242 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 15:38:12.242 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 15:38:12.243 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 15:38:12.244 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.244 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.245 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.281 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 15:38:12.282 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 15:38:12.283 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 15:38:12.283 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 15:38:12.284 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 15:38:12.285 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 15:38:12.288 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.288 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.292 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.320 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 15:38:12.320 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MTMALIGN_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 15:38:12.321 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 15:38:12.324 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 15:38:12.329 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.329 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.330 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.380 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 15:38:12.384 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 15:38:12.386 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 15:38:12.388 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 15:38:12.390 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 15:38:12.392 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.394 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.395 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.446 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 15:38:12.450 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 15:38:12.451 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONSENSUS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 15:38:12.452 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 15:38:12.453 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 15:38:12.455 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.456 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.457 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.480 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 15:38:12.484 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PIGZ_COMPRESS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 15:38:12.484 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 15:38:12.485 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 15:38:12.488 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.488 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.489 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.520 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 15:38:12.522 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 15:38:12.522 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 15:38:12.522 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 15:38:12.523 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 15:38:12.525 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.525 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.526 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.544 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 15:38:12.545 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 15:38:12.546 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 15:38:12.546 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 15:38:12.546 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 15:38:12.549 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.549 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.550 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.559 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 15:38:12.560 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 15:38:12.560 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 15:38:12.560 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 15:38:12.561 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 15:38:12.562 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.562 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.563 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.577 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 15:38:12.578 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 15:38:12.579 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 15:38:12.579 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 15:38:12.579 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 15:38:12.582 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.583 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.584 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.595 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 15:38:12.596 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALC_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 15:38:12.596 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 15:38:12.596 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 15:38:12.599 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.599 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.600 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.612 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 15:38:12.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 15:38:12.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 15:38:12.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 15:38:12.614 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 15:38:12.616 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.616 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.617 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.636 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 15:38:12.636 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 15:38:12.637 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 15:38:12.637 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 15:38:12.639 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.639 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.639 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.650 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 15:38:12.651 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PARSE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 15:38:12.652 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 15:38:12.654 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 15:38:12.656 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.656 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.657 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.671 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 15:38:12.672 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 15:38:12.673 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 15:38:12.673 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 15:38:12.674 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 15:38:12.675 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.675 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.675 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.689 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 15:38:12.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 15:38:12.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 15:38:12.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 15:38:12.692 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.692 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.693 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.713 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 15:38:12.714 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 15:38:12.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 15:38:12.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 15:38:12.717 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 15:38:12.719 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.720 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.720 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.758 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 15:38:12.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 15:38:12.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 15:38:12.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 15:38:12.760 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 15:38:12.761 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.761 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.762 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.788 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 15:38:12.789 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 15:38:12.790 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 15:38:12.790 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 15:38:12.791 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 15:38:12.792 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.792 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.793 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 15:38:12.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PREPARE_SHINY` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 15:38:12.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 15:38:12.810 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 15:38:12.812 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.812 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.812 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.844 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 15:38:12.844 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 15:38:12.845 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 15:38:12.846 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.847 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.848 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.869 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 15:38:12.870 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:FOLDMASON_MSA2LDDTREPORT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 15:38:12.870 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 15:38:12.871 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 15:38:12.872 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.872 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.872 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT': maxForks=0; fair=false; array=0
+Oct-17 15:38:12.975 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 15:38:12.976 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 15:38:12.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 15:38:12.979 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:12.979 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:12.979 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC': maxForks=0; fair=false; array=0
+Oct-17 15:38:13.020 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 15:38:13.021 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MULTIQC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 15:38:13.021 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 15:38:13.022 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 15:38:13.023 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 15:38:13.023 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 15:38:13.024 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC': maxForks=0; fair=false; array=0
+Oct-17 15:38:13.054 [main] DEBUG nextflow.Session - Config process names validation disabled as requested
+Oct-17 15:38:13.057 [main] DEBUG nextflow.Session - Igniting dataflow network (90)
+Oct-17 15:38:13.059 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 15:38:13.059 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 15:38:13.059 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 15:38:13.065 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 15:38:13.065 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 15:38:13.066 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 15:38:13.086 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 15:38:13.086 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 15:38:13.086 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 15:38:13.089 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 15:38:13.090 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 15:38:13.091 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files:
+  Script_8251928f53ed1e0e: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/multiqc/main.nf
+  Script_ec6d7c00dbe116f1: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/guidetree/main.nf
+  Script_57af96f2e16e9c7d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_multiqc/main.nf
+  Script_63ce457e8ec7f8af: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/upp/align/main.nf
+  Script_524f120a05221479: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/kalign/align/main.nf
+  Script_09ffe02c0c021b08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/irmsd/main.nf
+  Script_8425f66c1fadad9f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/regressive/main.nf
+  Script_5729c854db3bca08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/align/main.nf
+  Script_bad8f411f3f6ffa1: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+  Script_48b407151e6b24a5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/easymsa/main.nf
+  Script_7d22c6ec5ed4460e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/ALIGN/main.nf
+  Script_eda0c798b2c6de8e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/EVALUATE/main.nf
+  Script_fca9eae676f246fb: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/TEMPLATES/main.nf
+  Script_2a3123de5fac596c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/untar/main.nf
+  Script_35a72570ce85b0d1: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/pigz/compress/main.nf
+  Script_941048245083b1e2: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/concat/main.nf
+  Script_e0e9c77b2ae8e9b3: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/pdbtofasta/main.nf
+  Script_e823de7f89fcdd71: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/STATS/main.nf
+  Script_f0051a4616b96900: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/tcs/main.nf
+  Script_0dd893b3b9df6f1f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/guidetree/main.nf
+  Script_328b81a9521dfef3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/learnmsa/align/main.nf
+  Script_45033c525735daa5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mtmalign/align/main.nf
+  Script_7b4cef2b5410f808: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/magus/align/main.nf
+  Script_6bd16897fec1d5bc: /home/luisasantus/Desktop/multiplesequencealign/main.nf
+  Script_6cb5b9c70ca32fe9: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/msa2lddtreport/main.nf
+  Script_08462a39a86bdf01: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/PREPROCESS/main.nf
+  Script_32fec9f5ca14d441: /home/luisasantus/Desktop/multiplesequencealign/workflows/multiplesequencealign.nf
+  Script_2388659803e1fbf6: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/align/main.nf
+  Script_4a2e0f0221aa895f: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/VISUALIZATION/main.nf
+  Script_c468d244616aec2a: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/COMPUTE_TREES/main.nf
+  Script_5c4e8d4051efa81e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfcore_pipeline/main.nf
+  Script_0f4f66d244e61313: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/align/main.nf
+  Script_44d8335569596992: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/guidetree/main.nf
+  Script_a64a54a01f8015c7: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfschema_plugin/main.nf
+  Script_b93ee6233f5bb49c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/muscle5/super5/main.nf
+  Script_bca4a30519de91f7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/join/main.nf
+  Script_5eaf85488d283048: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/extractfrompdb/main.nf
+  Script_4f612cfd8c52e8cd: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nextflow_pipeline/main.nf
+  Script_71bf7e9900254bc9: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_seqstats/main.nf
+  Script_e1b81db8f4ff2371: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_sim/main.nf
+  Script_2cabea47677e033a: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/create_template/main.nf
+  Script_dcd3c7cec52a7525: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/align/main.nf
+  Script_fb9cf57a2c68281a: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/consensus/main.nf
+  Script_fd6913e0285b949d: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/fastavalidator/main.nf
+  Script_6ce6839019cc82da: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_shiny/main.nf
+  Script_35f6720269e842a7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/seqreformat/main.nf
+  Script_33c0168aace67863: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_gaps/main.nf
+  Script_008f1bb55a32fd55: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/createdb/main.nf
+  Script_9621fcdbdfd33417: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/extract_plddt/main.nf
+  Script_f3636f12629b7eb3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/alncompare/main.nf
+  Script_417dd392a2b3179d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_irmsd/main.nf
+Oct-17 15:38:13.091 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination 
+Oct-17 15:38:13.091 [main] DEBUG nextflow.Session - Session await
+Oct-17 15:38:13.214 [Actor Thread 9] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.002 s; external sort time: 0.011 s; total time: 0.013 s
+Oct-17 15:38:13.214 [Actor Thread 7] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.002 s; external sort time: 0.011 s; total time: 0.013 s
+Oct-17 15:38:13.225 [Actor Thread 7] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/collect-file/098e0ecb32e4d0c9c1489431eef1b033
+Oct-17 15:38:13.228 [Actor Thread 9] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/collect-file/281e1ca3c8d37bd1231c2a8a7920ee20
+Oct-17 15:38:13.234 [Actor Thread 9] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-5662845354858256861
+Oct-17 15:38:13.235 [Actor Thread 7] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-10908594045099829935
+Oct-17 15:38:13.699 [FileTransfer-1] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/2f/b7d8d62fc862d561063fae1aef424e/toxin-ref.fa
+Oct-17 15:38:13.700 [FileTransfer-2] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/af2_structures/seatoxin-ref.tar.gz to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/97/37c82dc967d1263835ae55950a7cd0/seatoxin-ref.tar.gz
+Oct-17 15:38:13.700 [FileTransfer-3] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/c1/97dba9b3951abe9c50e31f6a29054c/setoxin-ref.fa
+Oct-17 15:38:13.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:13.894 [Task submitter] INFO  nextflow.Session - [63/c1b5a4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)
+Oct-17 15:38:13.912 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:13.913 [Task submitter] INFO  nextflow.Session - [b2/868270] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)
+Oct-17 15:38:13.927 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:13.929 [Task submitter] INFO  nextflow.Session - [d7/9634ad] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)
+Oct-17 15:38:13.947 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:13.957 [Task submitter] INFO  nextflow.Session - [04/d2fa32] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)
+Oct-17 15:38:15.374 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/63/c1b5a4228808870070d846151335af]
+Oct-17 15:38:15.375 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
+Oct-17 15:38:15.392 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:15.402 [Task submitter] INFO  nextflow.Session - [09/3b3d9c] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)
+Oct-17 15:38:15.435 [TaskFinalizer-1] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
+Oct-17 15:38:15.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b2/868270283d98027f9195c5b3e8945f]
+Oct-17 15:38:15.484 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:15.487 [Task submitter] INFO  nextflow.Session - [91/391252] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)
+Oct-17 15:38:15.891 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/04/d2fa32297709021c35bbbac3d3a68e]
+Oct-17 15:38:15.904 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:15.906 [Task submitter] INFO  nextflow.Session - [cc/9ed30f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)
+Oct-17 15:38:17.728 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/91/391252a674316c7f6ee8e6a7dbf771]
+Oct-17 15:38:17.737 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:17.738 [Task submitter] INFO  nextflow.Session - [18/15794f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)
+Oct-17 15:38:17.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/09/3b3d9cc763bf3ae1090e0b4c959a95]
+Oct-17 15:38:17.801 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:17.802 [Task submitter] INFO  nextflow.Session - [9c/4a6d30] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)
+Oct-17 15:38:18.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/d7/9634ad5f79a0a0b7f3e953d2efa223]
+Oct-17 15:38:18.385 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:18.387 [Task submitter] INFO  nextflow.Session - [c6/adef86] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)
+Oct-17 15:38:18.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/cc/9ed30f4fe47653c9fc382cf6f57b72]
+Oct-17 15:38:18.662 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:18.663 [Task submitter] INFO  nextflow.Session - [b8/c1b643] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)
+Oct-17 15:38:18.977 [TaskFinalizer-7] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
+Oct-17 15:38:19.735 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/9c/4a6d301f5fefb83d28022415fa5665]
+Oct-17 15:38:19.800 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:19.800 [Task submitter] INFO  nextflow.Session - [84/935af3] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)
+Oct-17 15:38:20.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/c6/adef86ad2990167cbfae0be810c265]
+Oct-17 15:38:20.207 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:20.208 [Task submitter] INFO  nextflow.Session - [f5/bf27a4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)
+Oct-17 15:38:20.730 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b8/c1b643d8a8f06cef54d801c4a35184]
+Oct-17 15:38:20.770 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:20.770 [Task submitter] INFO  nextflow.Session - [15/5f2ac1] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)
+Oct-17 15:38:21.350 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/18/15794f34b664c1cb5423e7887022cb]
+Oct-17 15:38:21.364 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:21.367 [Task submitter] INFO  nextflow.Session - [ac/f17128] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)
+Oct-17 15:38:21.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/84/935af333d51426c239c5ad2065feb0]
+Oct-17 15:38:21.624 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:21.625 [Task submitter] INFO  nextflow.Session - [44/242579] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)
+Oct-17 15:38:22.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/f5/bf27a4ac87ab0098fcfd1a47f7cd0c]
+Oct-17 15:38:22.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:22.068 [Task submitter] INFO  nextflow.Session - [8e/dcc998] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)
+Oct-17 15:38:22.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/15/5f2ac15c26656afd4c1eda1bb79f9c]
+Oct-17 15:38:22.578 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:22.580 [Task submitter] INFO  nextflow.Session - [02/b5d862] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
+Oct-17 15:38:23.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 15; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ac/f171288f49a5b075a7dded3a2e428b]
+Oct-17 15:38:23.520 [TaskFinalizer-5] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
+Oct-17 15:38:23.539 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:23.540 [Task submitter] INFO  nextflow.Session - [4a/6cc074] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
+Oct-17 15:38:23.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/8e/dcc998ecad069c29fd35191bea9d21]
+Oct-17 15:38:23.917 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:23.918 [Task submitter] INFO  nextflow.Session - [cd/57377d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
+Oct-17 15:38:24.025 [FileTransfer-4] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin.ref to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/8e/1a4ac64d365ab2c450ecf798bad6ca/toxin.ref
+Oct-17 15:38:24.922 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 20; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/02/b5d86213fa1b24e35aefc01333ff23]
+Oct-17 15:38:24.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:24.970 [Task submitter] INFO  nextflow.Session - [e4/9d98f8] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
+Oct-17 15:38:26.060 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/4a/6cc074951a9bda6d270d34a06fb4f2]
+Oct-17 15:38:26.077 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:26.077 [Task submitter] INFO  nextflow.Session - [95/7af10d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
+Oct-17 15:38:26.419 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/cd/57377dc490458f4171954b893aed55]
+Oct-17 15:38:26.437 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:26.440 [Task submitter] INFO  nextflow.Session - [7f/41a79a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)
+Oct-17 15:38:27.391 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/e4/9d98f850d8eb17ba549b1fb3acbee6]
+Oct-17 15:38:27.400 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:27.400 [Task submitter] INFO  nextflow.Session - [52/5f8a8e] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)
+Oct-17 15:38:27.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7f/41a79a3f057ca25d5fd125920bd18f]
+Oct-17 15:38:27.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:27.934 [Task submitter] INFO  nextflow.Session - [69/45937d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)
+Oct-17 15:38:28.003 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 19; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/95/7af10dd098fd25836311414adc5f45]
+Oct-17 15:38:28.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:28.029 [Task submitter] INFO  nextflow.Session - [02/8e36da] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)
+Oct-17 15:38:30.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 25; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/69/45937d045598995cc9a6db67e7619d]
+Oct-17 15:38:30.114 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:30.116 [Task submitter] INFO  nextflow.Session - [1c/6d6917] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)
+Oct-17 15:38:30.184 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 26; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/02/8e36da97c40755ab69095a27066935]
+Oct-17 15:38:30.201 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:30.202 [Task submitter] INFO  nextflow.Session - [5f/949425] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)
+Oct-17 15:38:30.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/44/242579aeaefb8a4cd6a2639d6afde8]
+Oct-17 15:38:30.419 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:30.420 [Task submitter] INFO  nextflow.Session - [7a/7de8b8] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)
+Oct-17 15:38:30.505 [FileTransfer-5] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin.ref to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/eb/46f19bf2ba140d0bb7c73a3547c4bf/setoxin.ref
+Oct-17 15:38:31.785 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 28; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5f/949425e8cc31c5e46ddbd916fe208f]
+Oct-17 15:38:31.801 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:31.802 [Task submitter] INFO  nextflow.Session - [05/d3df2e] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)
+Oct-17 15:38:32.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 31; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7a/7de8b8bffc97f8a9aa0da39046eaf6]
+Oct-17 15:38:32.045 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:32.046 [Task submitter] INFO  nextflow.Session - [b6/63d553] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)
+Oct-17 15:38:32.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 27; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/1c/6d691772dc7257a4904d7f6b001b54]
+Oct-17 15:38:32.439 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:32.440 [Task submitter] INFO  nextflow.Session - [fd/9167c6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)
+Oct-17 15:38:34.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 29; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/05/d3df2e2e6def6012c3be58a6b8a90a]
+Oct-17 15:38:34.070 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:34.074 [Task submitter] INFO  nextflow.Session - [c8/fa1032] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)
+Oct-17 15:38:35.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 24; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/52/5f8a8ee1e74371e2e2ba9178b4135a]
+Oct-17 15:38:35.511 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:35.511 [Task submitter] INFO  nextflow.Session - [fa/3a57d1] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)
+Oct-17 15:38:35.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 30; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/c8/fa1032d2e6434d6e742a57ceec973c]
+Oct-17 15:38:35.908 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:35.909 [Task submitter] INFO  nextflow.Session - [e2/340e4a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)
+Oct-17 15:38:38.311 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 48; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/e2/340e4a87e39b27af4beb10ce3ffae1]
+Oct-17 15:38:38.318 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:38.318 [Task submitter] INFO  nextflow.Session - [5e/94a732] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)
+Oct-17 15:38:39.378 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 53; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fd/9167c6773c404197c4350b5b964a4b]
+Oct-17 15:38:39.383 [TaskFinalizer-3] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
+Oct-17 15:38:39.386 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:39.390 [Task submitter] INFO  nextflow.Session - [a5/6574f9] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)
+Oct-17 15:38:39.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 52; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fa/3a57d1c0c7266a81ce7cf2769d3fcb]
+Oct-17 15:38:39.544 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:39.544 [Task submitter] INFO  nextflow.Session - [3e/bcfb71] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)
+Oct-17 15:38:39.555 [TaskFinalizer-4] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
+Oct-17 15:38:41.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 49; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a5/6574f9be8e1623ad49486203d12d9f]
+Oct-17 15:38:41.196 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:41.197 [Task submitter] INFO  nextflow.Session - [27/a1c836] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)
+Oct-17 15:38:41.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 41; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3e/bcfb71e2ba1668565e422982c6dfb5]
+Oct-17 15:38:41.333 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:41.334 [Task submitter] INFO  nextflow.Session - [5c/65869a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)
+Oct-17 15:38:42.276 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 50; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b6/63d55356a422f916a7d9a432289eb7]
+Oct-17 15:38:42.280 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:42.281 [Task submitter] INFO  nextflow.Session - [96/cd03b6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)
+Oct-17 15:38:43.773 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 36; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/96/cd03b633776a524f2d36b08d8cd805]
+Oct-17 15:38:43.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:43.779 [Task submitter] INFO  nextflow.Session - [6f/fae71b] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)
+Oct-17 15:38:43.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 33; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5c/65869a6e7c77799f32c6e57d9337d0]
+Oct-17 15:38:43.858 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:43.858 [Task submitter] INFO  nextflow.Session - [77/1442cd] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)
+Oct-17 15:38:44.118 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 47; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/27/a1c8363fd72a4bfeb3154778799ff6]
+Oct-17 15:38:44.125 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:44.125 [Task submitter] INFO  nextflow.Session - [ad/36d18c] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)
+Oct-17 15:38:45.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 42; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ad/36d18c3927b1daaf2b33159fe61e8f]
+Oct-17 15:38:45.913 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:45.913 [Task submitter] INFO  nextflow.Session - [5e/d57124] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)
+Oct-17 15:38:46.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 37; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/77/1442cd131e38dddab926cf84748204]
+Oct-17 15:38:46.546 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:46.547 [Task submitter] INFO  nextflow.Session - [4e/ed5324] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)
+Oct-17 15:38:47.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 44; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5e/d57124124b734ad16a8ff190a77b30]
+Oct-17 15:38:47.870 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:47.871 [Task submitter] INFO  nextflow.Session - [4a/a882d6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)
+Oct-17 15:38:48.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 32; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/4e/ed5324e3886c50b562aaa986fa5dc7]
+Oct-17 15:38:48.199 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:48.200 [Task submitter] INFO  nextflow.Session - [6d/a52445] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)
+Oct-17 15:38:48.200 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 51; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5e/94a7321f77b7de2641403ad259703a]
+Oct-17 15:38:48.212 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:48.212 [Task submitter] INFO  nextflow.Session - [86/ee78df] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)
+Oct-17 15:38:51.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 39; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/86/ee78df29096e45a68f93a09d40c92f]
+Oct-17 15:38:51.213 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:51.218 [Task submitter] INFO  nextflow.Session - [57/c0ad2f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)
+Oct-17 15:38:51.322 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 35; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6d/a52445ee20069dade26e364700fab4]
+Oct-17 15:38:51.327 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:38:51.339 [Task submitter] INFO  nextflow.Session - [14/c768d2] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)
+Oct-17 15:39:05.256 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 43; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6f/fae71b875764d25e5f50c38c2dc350]
+Oct-17 15:39:05.260 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:05.261 [Task submitter] INFO  nextflow.Session - [bc/9b5fae] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)
+Oct-17 15:39:05.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 46; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/57/c0ad2f4eec7301fd57e8c3c5f8ec3c]
+Oct-17 15:39:05.367 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:05.369 [Task submitter] INFO  nextflow.Session - [0f/6d0d55] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)
+Oct-17 15:39:05.427 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 34; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/4a/a882d6173a23c114fd660881acef0b]
+Oct-17 15:39:05.434 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:05.434 [Task submitter] INFO  nextflow.Session - [ad/561d6d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
+Oct-17 15:39:08.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 54; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ad/561d6df39984543a9cccf199449239]
+Oct-17 15:39:08.675 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:08.675 [Task submitter] INFO  nextflow.Session - [b8/f98978] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)
+Oct-17 15:39:11.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 55; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b8/f98978b8ccf766537323ffa5e2a572]
+Oct-17 15:39:11.831 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:11.833 [Task submitter] INFO  nextflow.Session - [99/0324ab] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)
+Oct-17 15:39:13.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 45; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/0f/6d0d55f5c2f5b3154b95cf1fcef25f]
+Oct-17 15:39:13.104 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:13.104 [Task submitter] INFO  nextflow.Session - [a7/e5e123] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)
+Oct-17 15:39:15.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 58; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a7/e5e1231ed2af4a57783db30e639b27]
+Oct-17 15:39:15.643 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:15.643 [Task submitter] INFO  nextflow.Session - [51/0da7d0] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)
+Oct-17 15:39:16.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 56; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/99/0324ab042a9ef2138d5e98ade6f255]
+Oct-17 15:39:16.641 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:16.641 [Task submitter] INFO  nextflow.Session - [23/8d7873] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)
+Oct-17 15:39:18.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 57; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/51/0da7d0c7d3e969fa6ce6d9aace1386]
+Oct-17 15:39:18.173 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:18.174 [Task submitter] INFO  nextflow.Session - [c7/8b49aa] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)
+Oct-17 15:39:19.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 60; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/23/8d78739cb774d83c33164bd2a84878]
+Oct-17 15:39:19.623 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:19.624 [Task submitter] INFO  nextflow.Session - [34/be4e8a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)
+Oct-17 15:39:22.022 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 59; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/c7/8b49aa316c9b67574ed672ba44a390]
+Oct-17 15:39:22.026 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:22.026 [Task submitter] INFO  nextflow.Session - [42/0d4086] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)
+Oct-17 15:39:24.028 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 61; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/34/be4e8a3c457f4763c239095ed717e6]
+Oct-17 15:39:24.043 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:24.043 [Task submitter] INFO  nextflow.Session - [d4/5e3777] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
+Oct-17 15:39:25.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 62; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/42/0d4086b9997f7d6f326850e65c1463]
+Oct-17 15:39:25.559 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:25.559 [Task submitter] INFO  nextflow.Session - [49/b9014d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
+Oct-17 15:39:27.467 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 63; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/d4/5e377747dc210add63af499e5aa79f]
+Oct-17 15:39:27.472 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:27.473 [Task submitter] INFO  nextflow.Session - [e6/4eb766] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
+Oct-17 15:39:29.595 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 65; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/49/b9014d52cef49bdf3de75674b793dd]
+Oct-17 15:39:29.606 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:29.606 [Task submitter] INFO  nextflow.Session - [3c/8ee85f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
+Oct-17 15:39:30.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 64; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/e6/4eb766a97e3d961c6322c84bfa334b]
+Oct-17 15:39:30.058 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:30.061 [Task submitter] INFO  nextflow.Session - [f7/c88f6a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
+Oct-17 15:39:32.226 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 67; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3c/8ee85ff5469526b73dee5eab2771c3]
+Oct-17 15:39:32.233 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:32.235 [Task submitter] INFO  nextflow.Session - [6e/16d0e0] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
+Oct-17 15:39:32.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 66; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/f7/c88f6a12463d26b1857c693fcfe3c4]
+Oct-17 15:39:32.328 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:32.334 [Task submitter] INFO  nextflow.Session - [89/8660b0] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
+Oct-17 15:39:34.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 68; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6e/16d0e0889dab97a5c67aabfccf645b]
+Oct-17 15:39:34.891 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:34.894 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 71; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/89/8660b0258e87ae57bbaf952039dabb]
+Oct-17 15:39:34.903 [Task submitter] INFO  nextflow.Session - [48/10cdaa] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
+Oct-17 15:39:34.909 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:34.909 [Task submitter] INFO  nextflow.Session - [ee/a81f26] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
+Oct-17 15:39:37.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 70; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ee/a81f26a64b252bcdc4a31fc6d051e5]
+Oct-17 15:39:37.629 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:37.631 [Task submitter] INFO  nextflow.Session - [6f/78bcec] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
+Oct-17 15:39:37.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 69; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/48/10cdaa6da12bb595215052e9b0623b]
+Oct-17 15:39:37.664 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:37.666 [Task submitter] INFO  nextflow.Session - [a5/9af165] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
+Oct-17 15:39:40.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 73; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a5/9af165ec3d8b9a165fad0bdc3878a6]
+Oct-17 15:39:40.769 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:40.775 [Task submitter] INFO  nextflow.Session - [85/71ca89] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
+Oct-17 15:39:40.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 72; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6f/78bcecaa97d83b0a353d7c087118f8]
+Oct-17 15:39:40.810 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:40.820 [Task submitter] INFO  nextflow.Session - [65/0479c2] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
+Oct-17 15:39:44.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 74; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/85/71ca8973e3f7a523fcb6ab9e1c2dda]
+Oct-17 15:39:44.908 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:44.908 [Task submitter] INFO  nextflow.Session - [7b/f1b211] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
+Oct-17 15:39:44.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 75; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/65/0479c27e9006d85716565c5404a197]
+Oct-17 15:39:44.986 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:44.987 [Task submitter] INFO  nextflow.Session - [7a/3fd442] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
+Oct-17 15:39:47.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 77; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7a/3fd4422516841159828c88ed6c1ddf]
+Oct-17 15:39:47.088 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:47.089 [Task submitter] INFO  nextflow.Session - [57/f1ac83] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)
+Oct-17 15:39:47.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 76; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7b/f1b211f548821a4007e69672188c1e]
+Oct-17 15:39:47.135 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:47.136 [Task submitter] INFO  nextflow.Session - [93/9525e6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)
+Oct-17 15:39:49.449 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 79; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/93/9525e6bdcc9b8f6e82071262eec268]
+Oct-17 15:39:49.455 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:49.455 [Task submitter] INFO  nextflow.Session - [ae/612f8e] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
+Oct-17 15:39:51.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 80; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ae/612f8e8d5e664c4d4c6c995dff7adc]
+Oct-17 15:39:51.978 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:51.980 [Task submitter] INFO  nextflow.Session - [54/73dbfe] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)
+Oct-17 15:39:52.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 78; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/57/f1ac83991bb454269bf13dfd7b1161]
+Oct-17 15:39:52.541 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:52.541 [Task submitter] INFO  nextflow.Session - [d7/b5238a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)
+Oct-17 15:39:54.761 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 81; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/54/73dbfe19891a4a781754b707a83d78]
+Oct-17 15:39:54.776 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:54.777 [Task submitter] INFO  nextflow.Session - [84/6592a7] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
+Oct-17 15:39:54.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 82; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/d7/b5238acb8a97630f43bf3c88c3a610]
+Oct-17 15:39:54.827 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:54.828 [Task submitter] INFO  nextflow.Session - [3f/faa3cb] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
+Oct-17 15:39:57.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 165; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3f/faa3cb59e21347cff5fc5f69b2d8e5]
+Oct-17 15:39:57.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:57.692 [Task submitter] INFO  nextflow.Session - [fb/0d20be] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
+Oct-17 15:39:57.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 84; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/84/6592a7ccd04d1553531f1f4d2ff948]
+Oct-17 15:39:57.756 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:39:57.756 [Task submitter] INFO  nextflow.Session - [51/b3ff56] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
+Oct-17 15:40:00.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 86; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/51/b3ff569a8c8ddcaefc046d7bdf5027]
+Oct-17 15:40:00.171 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:00.172 [Task submitter] INFO  nextflow.Session - [88/2e27d3] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
+Oct-17 15:40:00.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 83; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fb/0d20be3c23cae9b5ba16e7e13fce61]
+Oct-17 15:40:00.259 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:00.259 [Task submitter] INFO  nextflow.Session - [0b/391a50] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
+Oct-17 15:40:02.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 87; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/0b/391a50ec7b3226037d26a9b6ca8bbe]
+Oct-17 15:40:02.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:02.967 [Task submitter] INFO  nextflow.Session - [05/4ed726] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
+Oct-17 15:40:03.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 85; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/88/2e27d3e141a924f73d5f7e3708e46a]
+Oct-17 15:40:03.985 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:03.986 [Task submitter] INFO  nextflow.Session - [3b/3df659] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)
+Oct-17 15:40:06.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 88; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/05/4ed726d0f2684d281f6ee72d00939d]
+Oct-17 15:40:06.332 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:06.333 [Task submitter] INFO  nextflow.Session - [83/efd2c9] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)
+Oct-17 15:40:08.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 91; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/83/efd2c91c913203035d6665e7129cb0]
+Oct-17 15:40:08.137 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:08.140 [Task submitter] INFO  nextflow.Session - [fd/546ad4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)
+Oct-17 15:40:09.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 89; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3b/3df6591d52ba8028973c77a97ea7c1]
+Oct-17 15:40:09.227 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:09.227 [Task submitter] INFO  nextflow.Session - [3d/814b06] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)
+Oct-17 15:40:10.585 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 90; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fd/546ad4df7d67753420a669c9d4f52e]
+Oct-17 15:40:10.589 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:10.590 [Task submitter] INFO  nextflow.Session - [a5/a77e58] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
+Oct-17 15:40:12.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 92; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3d/814b0663ee3ecdbb1d6c0f3c6c9180]
+Oct-17 15:40:12.549 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:12.550 [Task submitter] INFO  nextflow.Session - [7b/9bbb8d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
+Oct-17 15:40:14.554 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 93; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a5/a77e58ad00d0bfd03e5f6abf03e965]
+Oct-17 15:40:14.559 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:14.560 [Task submitter] INFO  nextflow.Session - [18/ea7999] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
+Oct-17 15:40:14.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 96; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7b/9bbb8d2d6f2a8a259ca1160c618c75]
+Oct-17 15:40:14.585 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:14.585 [Task submitter] INFO  nextflow.Session - [bf/8cd43f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
+Oct-17 15:40:17.829 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 95; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 1; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9]
+Oct-17 15:40:17.840 [TaskFinalizer-4] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
+Oct-17 15:40:17.842 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:17.843 [Task submitter] INFO  nextflow.Session - [5d/0a9534] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
+Oct-17 15:40:17.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 94; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/18/ea7999d4640bb1a6276a5d76941e38]
+Oct-17 15:40:17.860 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 15:40:17.861 [Task submitter] INFO  nextflow.Session - [1b/638c93] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
+Oct-17 15:40:17.911 [TaskFinalizer-4] ERROR nextflow.processor.TaskProcessor - Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)'
+
+Caused by:
+  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
+
+
+Command executed:
+
+  # check whether it is compressed
+  if [[ "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln" == *.gz ]]; then
+      unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa
+  else
+      mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa
+  fi
+  
+  export TEMP='./'
+  t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v "seq1" | grep -v '*' |         awk '{ print $4}' ORS="	"         >> "scores.txt"
+  
+  # Add metadata info to output file
+  echo "id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp" > "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
+  
+  # Add values
+  scores=$(awk '{sub(/[[:space:]]+$/, "")} 1' scores.txt | tr -s '[:blank:]' ',')
+  echo "seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores" >> "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
+  
+  cat <<-END_VERSIONS > versions.yml
+  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP":
+      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
+      pigz: $(echo $(pigz --version 2>&1) | sed 's/^.*pigz\w*//' ))
+  END_VERSIONS
+
+Command exit status:
+  1
+
+Command output:
+  (empty)
+
+Command error:
+  
+  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
+  
+  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
+
+Work dir:
+  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
+
+Container:
+  quay.io/biocontainers/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0
+
+Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
+Oct-17 15:40:17.955 [TaskFinalizer-4] WARN  n.c.DataContainers.TDPDataMatrix - No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 15:40:17.959 [TaskFinalizer-4] WARN  n.co2footprint.utils.HelperFunctions - Missing trace value '%cpu' for task 95, using default: 100% for all 2 cores.
+Oct-17 15:40:17.961 [TaskFinalizer-4] INFO  nextflow.Session - Execution cancelled -- Finishing pending tasks before exit
+Oct-17 15:40:18.008 [TaskFinalizer-4] ERROR nextflow.Nextflow - Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
+Oct-17 15:40:18.009 [main] DEBUG nextflow.Session - Session await > all processes finished
+Oct-17 15:40:18.014 [Actor Thread 11] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS; work-dir=null
+  error [java.lang.InterruptedException]: java.lang.InterruptedException
+Oct-17 15:40:18.069 [Actor Thread 16] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP; work-dir=null
+  error [java.lang.InterruptedException]: java.lang.InterruptedException
+Oct-17 15:40:18.072 [Actor Thread 41] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT; work-dir=null
+  error [java.lang.InterruptedException]: java.lang.InterruptedException
+Oct-17 15:40:18.174 [Actor Thread 46] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 27; slices: 1; internal sort time: 0.08 s; external sort time: 0.021 s; total time: 0.101 s
+Oct-17 15:40:18.196 [Actor Thread 46] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/collect-file/472aaacee1152b66cb80f2dccf73a646
+Oct-17 15:40:18.201 [Actor Thread 46] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-5984352675357452201
+Oct-17 15:40:21.260 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 97; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 1; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5d/0a953444a0e1d6c2e8a6b01a7e3eea]
+Oct-17 15:40:21.262 [TaskFinalizer-6] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5d/0a953444a0e1d6c2e8a6b01a7e3eea
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)` terminated with an error exit status (1)
+Oct-17 15:40:21.286 [TaskFinalizer-6] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 15:40:21.289 [TaskFinalizer-6] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 97, using default: 100% for all 2 cores.
+Oct-17 15:40:21.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 98; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/1b/638c93206d6478344e1f24df45ea7c]
+Oct-17 15:41:15.313 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 38; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); status: COMPLETED; exit: 125; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bc/9b5fae3e26729c55fb1b9354fc9550]
+Oct-17 15:41:15.315 [TaskFinalizer-9] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bc/9b5fae3e26729c55fb1b9354fc9550
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)` terminated with an error exit status (125)
+Oct-17 15:41:15.322 [TaskFinalizer-9] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 15:41:15.323 [TaskFinalizer-9] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 38, using default: 100% for all 2 cores.
+Oct-17 15:41:31.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 40; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); status: COMPLETED; exit: 125; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/14/c768d2a548be1c5a557721aec4e4a1]
+Oct-17 15:41:31.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop
+Oct-17 15:41:31.503 [main] DEBUG nextflow.Session - Session await > all barriers passed
+Oct-17 15:41:31.504 [TaskFinalizer-8] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/14/c768d2a548be1c5a557721aec4e4a1
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)` terminated with an error exit status (125)
+Oct-17 15:41:31.509 [TaskFinalizer-8] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 15:41:31.510 [TaskFinalizer-8] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 40, using default: 100% for all 2 cores.
+Oct-17 15:41:31.511 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'TaskFinalizer' shutdown completed (hard=false)
+Oct-17 15:41:31.512 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'PublishDir' shutdown completed (hard=false)
+Oct-17 15:41:31.518 [main] INFO  nextflow.Nextflow - -[nf-core/multiplesequencealign] Pipeline completed with errors-
+Oct-17 15:41:31.525 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=95; failedCount=4; ignoredCount=0; cachedCount=0; pendingCount=129; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=3m 21s; failedDuration=9m 53s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=5; peakCpus=10; peakMemory=15 GB; ]
+Oct-17 15:41:31.525 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file
+Oct-17 15:41:31.526 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow completed -- rendering & saving files
+Oct-17 15:41:31.907 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
+Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-tower@1.11.4'
+Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-tower
+Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-prov@1.2.2'
+Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-prov
+Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-co2footprint@1.0.0'
+Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-co2footprint
+Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-schema@2.5.1'
+Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-schema
+Oct-17 15:41:31.925 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'FileTransfer' shutdown completed (hard=false)
+Oct-17 15:41:31.927 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json
new file mode 100644
index 00000000..86179711
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json
@@ -0,0 +1 @@
+{"outdir":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output"}
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err
new file mode 100644
index 00000000..88fed570
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err
@@ -0,0 +1 @@
+Nextflow 25.04.8 is available - Please consider updating your version to it(B
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out
new file mode 100644
index 00000000..76681136
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out
@@ -0,0 +1,50 @@
+ERROR - [nf-co2footprint] Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)'
+
+Caused by:
+  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
+
+
+Command executed:
+
+  # check whether it is compressed
+  if [[ "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln" == *.gz ]]; then
+      unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa
+  else
+      mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa
+  fi
+  
+  export TEMP='./'
+  t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v "seq1" | grep -v '*' |         awk '{ print $4}' ORS="	"         >> "scores.txt"
+  
+  # Add metadata info to output file
+  echo "id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp" > "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
+  
+  # Add values
+  scores=$(awk '{sub(/[[:space:]]+$/, "")} 1' scores.txt | tr -s '[:blank:]' ',')
+  echo "seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores" >> "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
+  
+  cat <<-END_VERSIONS > versions.yml
+  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP":
+      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
+      pigz: $(echo $(pigz --version 2>&1) | sed 's/^.*pigz\w*//' ))
+  END_VERSIONS
+
+Command exit status:
+  1
+
+Command output:
+  (empty)
+
+Command error:
+  
+  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
+  
+  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
+
+Work dir:
+  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
+
+Container:
+  quay.io/biocontainers/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0
+
+Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command lineERROR - [nf-co2footprint] Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
new file mode 100644
index 00000000..35ffc2a3
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
@@ -0,0 +1,100 @@
+task_id	hash	native_id	name	status	exit	realtime	%cpu	rss	peak_rss	vmem	peak_vmem	rchar	wchar	cpus	start
+6	63/c1b5a4	3942212	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)	COMPLETED	0	0ms	35.4%	3 MB	3 MB	5.4 MB	5.4 MB	74.8 KB	3.5 KB	2	2025-10-17 15:38:13.966
+13	b2/868270	3942234	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)	COMPLETED	0	0ms	41.5%	2.9 MB	2.9 MB	5.4 MB	5.4 MB	78.5 KB	3.7 KB	2	2025-10-17 15:38:13.985
+1	04/d2fa32	3942285	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)	COMPLETED	0	211ms	38.6%	3.2 MB	3.2 MB	4.6 MB	4.6 MB	721.2 KB	684.8 KB	2	2025-10-17 15:38:14.000
+8	91/391252	3942471	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)	COMPLETED	0	1s	52.6%	6.3 MB	6.3 MB	8.6 MB	8.6 MB	998.4 KB	4.1 KB	2	2025-10-17 15:38:15.564
+11	09/3b3d9c	3942456	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)	COMPLETED	0	1s	48.5%	6 MB	6 MB	8.6 MB	8.6 MB	1010.4 KB	9.8 KB	2	2025-10-17 15:38:15.482
+2	d7/9634ad	3942249	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	COMPLETED	0	3s	69.8%	70.2 MB	70.2 MB	1.1 GB	1.1 GB	15.7 MB	623 B	2	2025-10-17 15:38:13.993
+3	cc/9ed30f	3942564	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	COMPLETED	0	1s	60.3%	10.6 MB	10.6 MB	16.9 MB	16.9 MB	4.3 MB	481 B	2	2025-10-17 15:38:15.991
+10	9c/4a6d30	3943021	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	COMPLETED	0	1s	33.9%	7 MB	7 MB	14.2 MB	14.2 MB	167.7 KB	17.2 KB	2	2025-10-17 15:38:17.891
+14	c6/adef86	3943153	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)	COMPLETED	0	0ms	53.8%	3.1 MB	3.1 MB	5.4 MB	5.4 MB	75.9 KB	3 KB	2	2025-10-17 15:38:18.468
+4	b8/c1b643	3943203	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	COMPLETED	0	1s	35.2%	3.2 MB	3.2 MB	5.4 MB	5.4 MB	147.6 KB	1.7 KB	2	2025-10-17 15:38:18.752
+9	18/15794f	3943002	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	COMPLETED	0	2s	99.0%	78.3 MB	78.3 MB	1.1 GB	1.1 GB	15.7 MB	882 B	2	2025-10-17 15:38:17.792
+12	84/935af3	3943314	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	COMPLETED	0	0ms	48.9%	8.1 MB	8.1 MB	85.9 MB	148.4 MB	70.4 KB	2.7 KB	2	2025-10-17 15:38:19.835
+5	f5/bf27a4	3943396	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)	COMPLETED	0	0ms	45.9%	2.9 MB	2.9 MB	5.4 MB	5.4 MB	77.4 KB	3.5 KB	2	2025-10-17 15:38:20.290
+7	15/5f2ac1	3943479	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	COMPLETED	0	0ms	59.0%	3 MB	3 MB	5.4 MB	5.4 MB	68.1 KB	833 B	2	2025-10-17 15:38:20.829
+15	ac/f17128	3943722	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	COMPLETED	0	1s	71.8%	12.7 MB	12.7 MB	19.2 MB	19.2 MB	4.3 MB	481 B	2	2025-10-17 15:38:21.450
+17	8e/dcc998	3943874	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	COMPLETED	0	0ms	126.3%	7.3 MB	7.3 MB	1.1 GB	1.1 GB	89.7 KB	5.6 KB	2	2025-10-17 15:38:22.144
+20	02/b5d862	3944000	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	1s	39.9%	6.8 MB	6.8 MB	14.2 MB	14.2 MB	934.5 KB	234.5 KB	2	2025-10-17 15:38:22.711
+22	4a/6cc074	3944086	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	1s	49.0%	2.9 MB	2.9 MB	5.4 MB	5.4 MB	928.2 KB	232.1 KB	2	2025-10-17 15:38:23.611
+18	cd/57377d	3944155	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	0ms	44.4%	3.1 MB	3.1 MB	5.4 MB	5.4 MB	941.3 KB	237 KB	2	2025-10-17 15:38:24.002
+21	e4/9d98f8	3944284	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	0ms	50.3%	3.1 MB	3.1 MB	5.4 MB	5.4 MB	904.5 KB	223.2 KB	2	2025-10-17 15:38:25.023
+23	7f/41a79a	3944527	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)	COMPLETED	0	78ms	50.0%	3 MB	3 MB	4.3 MB	4.3 MB	145 KB	1.5 KB	2	2025-10-17 15:38:26.518
+19	95/7af10d	3944452	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	0ms	53.2%	7 MB	7 MB	14.2 MB	14.2 MB	899.2 KB	221.3 KB	2	2025-10-17 15:38:26.159
+25	69/45937d	3944726	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)	COMPLETED	0	149ms	28.4%	3 MB	3 MB	4.3 MB	4.3 MB	129.5 KB	1.5 KB	2	2025-10-17 15:38:28.003
+26	02/8e36da	3944741	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)	COMPLETED	0	0ms	47.6%	3 MB	3 MB	4.3 MB	4.3 MB	73.9 KB	531 B	2	2025-10-17 15:38:28.101
+16	44/242579	3943778	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)	COMPLETED	0	7s	83.5%	47.2 MB	47.2 MB	276.9 MB	276.9 MB	17.5 MB	224.3 KB	2	2025-10-17 15:38:21.690
+28	5f/949425	3945071	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	COMPLETED	0	0ms	53.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	88.3 KB	4.1 KB	2	2025-10-17 15:38:30.284
+31	7a/7de8b8	3945132	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	47.1%	3 MB	3 MB	4.3 MB	4.3 MB	106.8 KB	2 KB	2	2025-10-17 15:38:30.502
+27	1c/6d6917	3945040	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)	COMPLETED	0	0ms	46.1%	7.8 MB	7.8 MB	13.4 MB	13.4 MB	694.1 KB	29 KB	2	2025-10-17 15:38:30.184
+29	05/d3df2e	3945301	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)	COMPLETED	0	1s	43.9%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	676.2 KB	16.4 KB	2	2025-10-17 15:38:31.885
+24	52/5f8a8e	3944665	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)	COMPLETED	0	6s	91.9%	51.6 MB	51.6 MB	282.2 MB	282.2 MB	18 MB	595.7 KB	2	2025-10-17 15:38:27.485
+30	c8/fa1032	3945758	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	36.8%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	88.2 KB	4.1 KB	2	2025-10-17 15:38:34.132
+48	e2/340e4a	3945978	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)	COMPLETED	0	1s	39.0%	6.1 MB	6.1 MB	8.6 MB	8.6 MB	991.1 KB	11.2 KB	2	2025-10-17 15:38:36.005
+53	fd/9167c6	3945446	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	COMPLETED	0	5.2s	67.6%	98.6 MB	98.6 MB	120.3 MB	120.3 MB	3.1 MB	2.8 MB	2	2025-10-17 15:38:32.495
+52	fa/3a57d1	3945929	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	COMPLETED	0	2.2s	23.3%	27.1 MB	27.1 MB	31.5 MB	31.5 MB	422 KB	145.9 KB	2	2025-10-17 15:38:35.560
+49	a5/6574f9	3946456	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	75.7%	13.3 MB	14.2 MB	1.1 GB	1.1 GB	89.3 KB	5.5 KB	2	2025-10-17 15:38:39.480
+41	3e/bcfb71	3946498	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	28.2%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	109.1 KB	4.6 KB	2	2025-10-17 15:38:39.641
+50	b6/63d553	3945352	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)	COMPLETED	0	8s	171.0%	28.2 MB	28.2 MB	541.4 MB	544.2 MB	759.9 KB	35.3 KB	2	2025-10-17 15:38:32.125
+36	96/cd03b6	3946899	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	40.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	115.5 KB	2.2 KB	2	2025-10-17 15:38:42.376
+33	5c/65869a	3946687	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	1s	37.6%	7.4 MB	7.4 MB	9.6 MB	9.6 MB	979 KB	4.3 KB	2	2025-10-17 15:38:41.423
+47	27/a1c836	3946657	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	1s	37.5%	7.3 MB	7.3 MB	9.6 MB	9.6 MB	991 KB	10.5 KB	2	2025-10-17 15:38:41.290
+42	ad/36d18c	3947190	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	44.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	102.2 KB	2.1 KB	2	2025-10-17 15:38:44.218
+37	77/1442cd	3947127	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)	COMPLETED	0	0ms	38.8%	6.3 MB	6.3 MB	8.6 MB	8.6 MB	979 KB	4.4 KB	2	2025-10-17 15:38:43.951
+44	5e/d57124	3947430	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	64.9%	8 MB	8 MB	11.3 MB	11.4 MB	117.2 KB	4.1 KB	2	2025-10-17 15:38:46.008
+32	4e/ed5324	3947551	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	26.2%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	99.9 KB	731 B	2	2025-10-17 15:38:46.642
+51	5e/94a732	3946274	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)	COMPLETED	0	8s	187.9%	28.2 MB	28.2 MB	541.6 MB	604.7 MB	4.8 MB	52.7 KB	2	2025-10-17 15:38:38.412
+39	86/ee78df	3947782	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)	COMPLETED	0	1s	107.1%	19.6 MB	19.6 MB	25.1 MB	25.1 MB	1.1 MB	29.4 KB	2	2025-10-17 15:38:48.302
+35	6d/a52445	3947780	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	COMPLETED	0	1s	98.0%	35.1 MB	35.1 MB	46 MB	46 MB	739.2 KB	18 KB	2	2025-10-17 15:38:48.301
+43	6f/fae71b	3947111	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	8s	100.2%	44.6 MB	44.6 MB	622.9 MB	686.9 MB	18.9 MB	643.2 KB	2	2025-10-17 15:38:43.852
+46	57/c0ad2f	3948219	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)	COMPLETED	0	5.7s	90.0%	132.6 MB	133.2 MB	743.9 MB	807.9 MB	19.9 MB	423.1 KB	2	2025-10-17 15:38:51.310
+34	4a/a882d6	3947725	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	6s	85.0%	44.4 MB	44.4 MB	272.6 MB	336.6 MB	18.3 MB	241.4 KB	2	2025-10-17 15:38:47.965
+54	ad/561d6d	3949638	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	177ms	34.1%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	125.2 KB	4.2 KB	2	2025-10-17 15:39:05.527
+55	b8/f98978	3950005	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	COMPLETED	0	1s	39.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	86.8 KB	1.2 KB	2	2025-10-17 15:39:08.763
+45	0f/6d0d55	3949615	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	COMPLETED	0	6.3s	65.5%	133.6 MB	135 MB	746.2 MB	810.4 MB	17.1 MB	185.7 KB	2	2025-10-17 15:39:05.428
+58	a7/e5e123	3950505	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	COMPLETED	0	0ms	57.9%	3 MB	3 MB	4.3 MB	4.3 MB	292.4 KB	10.3 KB	2	2025-10-17 15:39:13.199
+56	99/0324ab	3950334	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	COMPLETED	0	4s	81.0%	75.3 MB	75.3 MB	91.3 MB	91.3 MB	3 MB	2.7 MB	2	2025-10-17 15:39:11.882
+57	51/0da7d0	3950939	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	COMPLETED	0	1s	46.5%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	292.4 KB	10.3 KB	2	2025-10-17 15:39:15.739
+60	23/8d7873	3951134	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)	COMPLETED	0	167ms	34.0%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	390.2 KB	2.3 KB	2	2025-10-17 15:39:16.729
+59	c7/8b49aa	3951218	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)	COMPLETED	0	500ms	30.1%	11.2 MB	11.2 MB	38.9 MB	38.9 MB	355.2 KB	6.3 KB	2	2025-10-17 15:39:18.267
+61	34/be4e8a	3951544	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)	COMPLETED	0	58ms	49.2%	3 MB	3 MB	4.3 MB	4.3 MB	114.4 KB	884 B	2	2025-10-17 15:39:19.719
+62	42/0d4086	3951796	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)	COMPLETED	0	0ms	43.5%	3 MB	3 MB	4.3 MB	4.3 MB	73.8 KB	468 B	2	2025-10-17 15:39:22.121
+63	d4/5e3777	3951946	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	95ms	39.2%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	119.3 KB	1.4 KB	2	2025-10-17 15:39:24.128
+65	49/b9014d	3952290	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	37.6%	3 MB	3 MB	4.3 MB	4.3 MB	85.4 KB	648 B	2	2025-10-17 15:39:25.653
+64	e6/4eb766	3952434	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	1s	48.4%	2.9 MB	2.9 MB	4.3 MB	4.3 MB	391.6 KB	136.5 KB	2	2025-10-17 15:39:27.568
+67	3c/8ee85f	3952747	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	0ms	44.3%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	256.6 KB	2.9 KB	2	2025-10-17 15:39:29.694
+66	f7/c88f6a	3952809	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	0ms	42.9%	7 MB	7 MB	12.5 MB	12.5 MB	256.6 KB	2.9 KB	2	2025-10-17 15:39:30.145
+68	6e/16d0e0	3953023	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	33.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	85.4 KB	657 B	2	2025-10-17 15:39:32.317
+71	89/8660b0	3953058	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	109ms	40.3%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	119.6 KB	1.4 KB	2	2025-10-17 15:39:32.416
+69	48/10cdaa	3953530	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	0ms	49.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	391.1 KB	136.1 KB	2	2025-10-17 15:39:34.994
+70	ee/a81f26	3953539	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	0ms	37.1%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	256.7 KB	3 KB	2	2025-10-17 15:39:34.995
+73	a5/9af165	3953789	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	33.8%	3 MB	3 MB	4.3 MB	4.3 MB	85.4 KB	637 B	2	2025-10-17 15:39:37.744
+72	6f/78bcec	3953788	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	0ms	44.4%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	256.8 KB	3 KB	2	2025-10-17 15:39:37.739
+74	85/71ca89	3954385	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	0ms	51.3%	6.9 MB	6.9 MB	12.5 MB	12.5 MB	390.8 KB	135.8 KB	2	2025-10-17 15:39:40.802
+75	65/0479c2	3954395	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	98ms	34.5%	3 MB	3 MB	4.3 MB	4.3 MB	119.3 KB	1.3 KB	2	2025-10-17 15:39:40.901
+77	7a/3fd442	3955035	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	0ms	42.1%	3 MB	3 MB	4.3 MB	4.3 MB	256.5 KB	2.9 KB	2	2025-10-17 15:39:45.077
+76	7b/f1b211	3955000	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	0ms	41.7%	3 MB	3 MB	4.3 MB	4.3 MB	256.5 KB	2.9 KB	2	2025-10-17 15:39:44.977
+79	93/9525e6	3955344	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	COMPLETED	0	0ms	43.6%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	86.8 KB	1.2 KB	2	2025-10-17 15:39:47.220
+80	ae/612f8e	3955620	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	76ms	43.0%	3 MB	3 MB	4.3 MB	4.3 MB	125.2 KB	4.2 KB	2	2025-10-17 15:39:49.549
+78	57/f1ac83	3955278	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	COMPLETED	0	3s	83.1%	75.6 MB	75.6 MB	91.3 MB	91.3 MB	3 MB	2.7 MB	2	2025-10-17 15:39:47.121
+81	54/73dbfe	3956014	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	COMPLETED	0	0ms	57.5%	3 MB	3 MB	4.3 MB	4.3 MB	292.3 KB	10.3 KB	2	2025-10-17 15:39:52.071
+82	d7/b5238a	3956076	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	COMPLETED	0	0ms	52.2%	12.3 MB	12.3 MB	24.8 MB	24.8 MB	292.3 KB	10.3 KB	2	2025-10-17 15:39:52.635
+165	3f/faa3cb	3956340	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	30.1%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	85.4 KB	645 B	2	2025-10-17 15:39:54.890
+84	84/6592a7	3956306	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	0ms	40.0%	7.3 MB	7.3 MB	12.5 MB	12.5 MB	391.1 KB	136 KB	2	2025-10-17 15:39:54.789
+86	51/b3ff56	3956844	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	40.5%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	85.4 KB	642 B	2	2025-10-17 15:39:57.842
+83	fb/0d20be	3956816	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	80ms	37.0%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	119.7 KB	1.4 KB	2	2025-10-17 15:39:57.743
+87	0b/391a50	3957043	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	1s	36.2%	3 MB	3 MB	4.3 MB	4.3 MB	256.8 KB	3 KB	2	2025-10-17 15:40:00.347
+85	88/2e27d3	3957012	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	1s	38.5%	8.6 MB	8.6 MB	16.6 MB	16.6 MB	256.8 KB	3 KB	2	2025-10-17 15:40:00.246
+88	05/4ed726	3957661	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	105ms	42.9%	3 MB	3 MB	4.3 MB	4.3 MB	124.6 KB	4 KB	2	2025-10-17 15:40:03.061
+91	83/efd2c9	3958225	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	COMPLETED	0	0ms	50.0%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	86.7 KB	1.2 KB	2	2025-10-17 15:40:06.418
+89	3b/3df659	3957774	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	COMPLETED	0	3s	80.5%	75.3 MB	75.3 MB	91 MB	91 MB	3 MB	2.7 MB	2	2025-10-17 15:40:04.078
+90	fd/546ad4	3958405	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	COMPLETED	0	0ms	43.9%	2.8 MB	2.8 MB	4.3 MB	4.3 MB	293.3 KB	10.2 KB	2	2025-10-17 15:40:08.218
+92	3d/814b06	3958525	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	COMPLETED	0	1s	53.5%	3 MB	3 MB	4.3 MB	4.3 MB	293.3 KB	10.2 KB	2	2025-10-17 15:40:09.318
+93	a5/a77e58	3958862	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	1s	39.8%	1.9 MB	1.9 MB	4 MB	4 MB	390.7 KB	135.8 KB	2	2025-10-17 15:40:10.685
+96	7b/9bbb8d	3959045	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	47.1%	3 MB	3 MB	4.3 MB	4.3 MB	85.4 KB	636 B	2	2025-10-17 15:40:12.635
+94	18/ea7999	3959200	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	98ms	41.4%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	119.3 KB	1.3 KB	2	2025-10-17 15:40:14.677
+95	bf/8cd43f	3959201	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	FAILED	1	3.2s	-	-	-	-	-	-	-	2	2025-10-17 15:40:14.678
+97	5d/0a9534	3959685	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	FAILED	1	3.3s	-	-	-	-	-	-	-	2	2025-10-17 15:40:17.952
+98	1b/638c93	3959686	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	71ms	57.1%	3 MB	3 MB	4.3 MB	4.3 MB	125 KB	4.1 KB	2	2025-10-17 15:40:17.953
+38	bc/9b5fae	3949584	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	FAILED	125	2m 10s	-	-	-	-	-	-	-	2	2025-10-17 15:39:05.356
+40	14/c768d2	3948280	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	FAILED	125	2m 40s	-	-	-	-	-	-	-	2	2025-10-17 15:38:51.422
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz
new file mode 100644
index 0000000000000000000000000000000000000000..1d0d2acb4e65bd2d5b8eac82b2d7c84873816e63
GIT binary patch
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diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz
new file mode 100644
index 0000000000000000000000000000000000000000..757ea9db4a6946b1bd8e3cca0f9472d4369dabf9
GIT binary patch
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diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz
new file mode 100644
index 0000000000000000000000000000000000000000..033c8fd70b0a814334cbe1cafd9122bbfa7859f6
GIT binary patch
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literal 0
HcmV?d00001

diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores
new file mode 100644
index 00000000..7462fb5a
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores
@@ -0,0 +1,2 @@
+id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS
+toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,802
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs
new file mode 100644
index 00000000..ef7b03c9
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs
@@ -0,0 +1,78 @@
+T-COFFEE, Version_13.46.0.919e8c6b (2023-07-07 22:06:42 - Revision 29996c5 - Build 980)
+Cedric Notredame 
+CPU TIME:0 sec.
+SCORE=802
+*
+ BAD AVG GOOD
+*
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diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores
new file mode 100644
index 00000000..3c944365
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores
@@ -0,0 +1,2 @@
+id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS
+toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,808
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs
new file mode 100644
index 00000000..f4695113
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs
@@ -0,0 +1,78 @@
+T-COFFEE, Version_13.46.0.919e8c6b (2023-07-07 22:06:42 - Revision 29996c5 - Build 980)
+Cedric Notredame 
+CPU TIME:0 sec.
+SCORE=808
+*
+ BAD AVG GOOD
+*
+1fas    :  72
+2cdx    :  83
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+
+
+
+
+
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores
new file mode 100644
index 00000000..101dd921
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores
@@ -0,0 +1,2 @@
+id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS
+toxin-ref,FAMSA,,default,MAGUS,,default,814
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs
new file mode 100644
index 00000000..70a5ddf2
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs
@@ -0,0 +1,78 @@
+T-COFFEE, Version_13.46.0.919e8c6b (2023-07-07 22:06:42 - Revision 29996c5 - Build 980)
+Cedric Notredame 
+CPU TIME:0 sec.
+SCORE=814
+*
+ BAD AVG GOOD
+*
+2cdx    :  82
+1ntn    :  82
+1nxb    :  83
+1kxia   :  82
+1txb    :  82
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diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html
new file mode 100644
index 00000000..6baf49bd
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html
@@ -0,0 +1,1385 @@
+<!DOCTYPE html>
+<!--
+  ~ Copyright 2013-2023, Seqera Labs
+  ~
+  ~ Licensed under the Apache License, Version 2.0 (the "License");
+  ~ you may not use this file except in compliance with the License.
+  ~ You may obtain a copy of the License at
+  ~
+  ~     http://www.apache.org/licenses/LICENSE-2.0
+  ~
+  ~ Unless required by applicable law or agreed to in writing, software
+  ~ distributed under the License is distributed on an "AS IS" BASIS,
+  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  ~ See the License for the specific language governing permissions and
+  ~ limitations under the License.
+  -->
+<html lang="en">
+<head>
+  <meta charset="UTF-8">
+  <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+  <meta name="description" content="Nextflow workflow report for run id [ecstatic_pesquet]">
+  <meta name="author" content="Sabrina Krakau">
+  <link rel="icon" type="image/png" href="https://www.nextflow.io/img/favicon.png" />
+  <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
+
+  <title>[ecstatic_pesquet] Nextflow CO₂e Footprint Report</title>
+
+  <style>
+  /*!
+ * Bootstrap v4.0.0-beta.2 (https://getbootstrap.com)
+ * Copyright 2011-2017 The Bootstrap Authors
+ * Copyright 2011-2017 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */:root{--blue:#007bff;--indigo:#6610f2;--purple:#6f42c1;--pink:#e83e8c;--red:#dc3545;--orange:#fd7e14;--yellow:#ffc107;--green:#28a745;--teal:#20c997;--cyan:#17a2b8;--white:#fff;--gray:#868e96;--gray-dark:#343a40;--primary:#007bff;--secondary:#868e96;--success:#28a745;--info:#17a2b8;--warning:#ffc107;--danger:#dc3545;--light:#f8f9fa;--dark:#343a40;--breakpoint-xs:0;--breakpoint-sm:576px;--breakpoint-md:768px;--breakpoint-lg:992px;--breakpoint-xl:1200px;--font-family-sans-serif:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Helvetica Neue",Arial,sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol";--font-family-monospace:"SFMono-Regular",Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace}@media print{*,::after,::before{text-shadow:none!important;box-shadow:none!important}a,a:visited{text-decoration:underline}abbr[title]::after{content:" (" attr(title) ")"}pre{white-space:pre-wrap!important}blockquote,pre{border:1px solid 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+
+
+@keyframes dtb-spinner{100%{transform:rotate(360deg)}}@-o-keyframes dtb-spinner{100%{-o-transform:rotate(360deg);transform:rotate(360deg)}}@-ms-keyframes dtb-spinner{100%{-ms-transform:rotate(360deg);transform:rotate(360deg)}}@-webkit-keyframes dtb-spinner{100%{-webkit-transform:rotate(360deg);transform:rotate(360deg)}}@-moz-keyframes dtb-spinner{100%{-moz-transform:rotate(360deg);transform:rotate(360deg)}}div.dt-button-info{position:fixed;top:50%;left:50%;width:400px;margin-top:-100px;margin-left:-200px;background-color:white;border:2px solid #111;box-shadow:3px 3px 8px rgba(0,0,0,0.3);border-radius:3px;text-align:center;z-index:21}div.dt-button-info h2{padding:0.5em;margin:0;font-weight:normal;border-bottom:1px solid #ddd;background-color:#f3f3f3}div.dt-button-info>div{padding:1em}ul.dt-button-collection.dropdown-menu{display:block;z-index:2002;-webkit-column-gap:8px;-moz-column-gap:8px;-ms-column-gap:8px;-o-column-gap:8px;column-gap:8px}ul.dt-button-collection.dropdown-menu.fixed{position:fixed;top:50%;left:50%;margin-left:-75px;border-radius:0}ul.dt-button-collection.dropdown-menu.fixed.two-column{margin-left:-150px}ul.dt-button-collection.dropdown-menu.fixed.three-column{margin-left:-225px}ul.dt-button-collection.dropdown-menu.fixed.four-column{margin-left:-300px}ul.dt-button-collection.dropdown-menu>*{-webkit-column-break-inside:avoid;break-inside:avoid}ul.dt-button-collection.dropdown-menu.two-column{width:300px;padding-bottom:1px;-webkit-column-count:2;-moz-column-count:2;-ms-column-count:2;-o-column-count:2;column-count:2}ul.dt-button-collection.dropdown-menu.three-column{width:450px;padding-bottom:1px;-webkit-column-count:3;-moz-column-count:3;-ms-column-count:3;-o-column-count:3;column-count:3}ul.dt-button-collection.dropdown-menu.four-column{width:600px;padding-bottom:1px;-webkit-column-count:4;-moz-column-count:4;-ms-column-count:4;-o-column-count:4;column-count:4}ul.dt-button-collection{-webkit-column-gap:8px;-moz-column-gap:8px;-ms-column-gap:8px;-o-column-gap:8px;column-gap:8px}ul.dt-button-collection.fixed{position:fixed;top:50%;left:50%;margin-left:-75px;border-radius:0}ul.dt-button-collection.fixed.two-column{margin-left:-150px}ul.dt-button-collection.fixed.three-column{margin-left:-225px}ul.dt-button-collection.fixed.four-column{margin-left:-300px}ul.dt-button-collection>*{-webkit-column-break-inside:avoid;break-inside:avoid}ul.dt-button-collection.two-column{width:300px;padding-bottom:1px;-webkit-column-count:2;-moz-column-count:2;-ms-column-count:2;-o-column-count:2;column-count:2}ul.dt-button-collection.three-column{width:450px;padding-bottom:1px;-webkit-column-count:3;-moz-column-count:3;-ms-column-count:3;-o-column-count:3;column-count:3}ul.dt-button-collection.four-column{width:600px;padding-bottom:1px;-webkit-column-count:4;-moz-column-count:4;-ms-column-count:4;-o-column-count:4;column-count:4}ul.dt-button-collection.fixed{max-width:none}ul.dt-button-collection.fixed:before,ul.dt-button-collection.fixed:after{display:none}div.dt-button-background{position:fixed;top:0;left:0;width:100%;height:100%;z-index:999}@media screen and (max-width: 767px){div.dt-buttons{float:none;width:100%;text-align:center;margin-bottom:0.5em}div.dt-buttons a.btn{float:none}}div.dt-buttons button.btn.processing,div.dt-buttons div.btn.processing,div.dt-buttons a.btn.processing{color:rgba(0,0,0,0.2)}div.dt-buttons button.btn.processing:after,div.dt-buttons div.btn.processing:after,div.dt-buttons a.btn.processing:after{position:absolute;top:50%;left:50%;width:16px;height:16px;margin:-8px 0 0 -8px;box-sizing:border-box;display:block;content:' ';border:2px solid #282828;border-radius:50%;border-left-color:transparent;border-right-color:transparent;animation:dtb-spinner 1500ms infinite linear;-o-animation:dtb-spinner 1500ms infinite linear;-ms-animation:dtb-spinner 1500ms infinite linear;-webkit-animation:dtb-spinner 1500ms infinite linear;-moz-animation:dtb-spinner 1500ms infinite linear}
+
+
+table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:rgba(255,255,255,0.7);z-index:202}div.DTCR_pointer{width:1px;background-color:#0275d8;z-index:201}
+
+
+
+
+
+
+/*
+ * Nextflow CO2e Report Custom CSS
+ */
+
+/* General page style */
+body {
+  padding-top: 56px;
+}
+
+/* Top bar */
+.navbar {
+  box-shadow: 0 .5rem 1rem #00000011;
+}
+
+.navbar-brand img {
+  width: 20px;
+  height: 20px;
+  margin: 0 10px 5px 0;
+}
+
+/* Top part until 'CO2e Footprint Measures' */
+.jumbotron {
+  background-repeat: no-repeat;
+  background-size: cover;
+  background-image:
+    linear-gradient(180deg, rgba(255,255,255,0) 0%, rgba(255,255,255,0.5) 10%, rgba(255,255,255,1) 50%),
+    url('data:image/png;base64,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')
+}
+.jumbotron .container {
+  background-color: rgba(255,255,255,0.8);
+  border-radius: 0.3rem;
+  padding: 1rem 2rem;
+}
+
+.card-wrap {
+  gap: 1.5rem;
+  margin-left: -0.75rem;
+  margin-right: -0.75rem;
+}
+
+.metric-card {
+  width: 18%;
+  text-align: center;
+  flex: 1 1 200px;
+  min-width: 200px;
+}
+
+.metric-card svg {
+  margin: 0.5rem auto;
+  height:50px;
+}
+.metric {
+  font-size: 2rem;
+  font-weight: 300;
+  line-height: 1.2;
+}
+.metric-title {
+  font-size: 1rem;
+  margin-bottom: 0.5rem;
+  font-weight: 500;
+}
+
+pre {
+  margin-bottom: 0;
+}
+pre.nfcommand {
+  white-space: pre-wrap;
+  border: 1px solid #ccc;
+  padding: 10px 15px;
+  border-radius: 5px;
+  background-color: #F0F2F4;
+  font-size: 0.8rem;
+}
+
+table td {
+  max-width: 200px;
+  overflow-x: auto;
+}
+
+.script_block.short {
+  max-height: 30px;
+  overflow-y: hidden;
+  cursor: pointer;
+}
+
+footer {
+  background-color: #ededed;
+  margin: 50px 0 0;
+  padding: 20px 0;
+  border-top: 1px solid #cccccc;
+  color: #999999;
+  font-size: 0.8rem;
+}
+footer a {
+  color: #999999;
+  text-decoration: underline;
+}
+
+#nf-form-humanreadable {
+  margin-bottom: 1rem;
+}
+
+#tasks_table_filter {
+  display: flex;
+}
+#tasks_table_filter>.btn-group {
+  vertical-align: top;
+  margin-right: 1rem;
+  height: calc(1.8125rem + 3px);
+}
+#tasks_table_filter .buttons-colvisGroup {
+  padding: 0.2rem 0.75rem;
+}
+#tasks_table_filter .dt-buttons::before {
+  content: "Filter: ";
+  padding: 0.2rem 0.5rem;
+  font-size: 1.1rem;
+}
+
+.tab-pane {
+  display: block !important;
+  position: relative !important;
+  visibility: hidden;
+  overflow: hidden;
+  width: 100%;
+  height: 0;
+  z-index: 0;
+  opacity: 0;
+  transition: visibility 0s, opacity 0.3s ease-in-out;
+}
+
+.tab-pane.active {
+  visibility: visible;
+  overflow: visible;
+  height: auto;
+  z-index: 1;
+  opacity: 1;
+}
+
+.expandable-label {
+  padding: 6px 12px;
+  border-radius: 8px;
+  border: 2px solid #badbcc;
+  background-color: #d1e7dd;
+  font-weight: bold;
+  color: #0f5132;
+  display: inline-block;
+}
+
+summary {
+  cursor: pointer;
+}
+  </style>
+
+</head>
+<body>
+  <nav id="nf-report-navbar" class="navbar navbar-expand-md navbar-light fixed-top bg-white">
+    <div class="container">
+      <a class="navbar-brand" href="#">
+        <img src="data:image/png;base64,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" alt="Nextflow logo (green lanes that are crossing in the middle)">
+      Nextflow CO<sub>2</sub>e Report
+    </a>
+    <button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation">
+      <span class="navbar-toggler-icon"></span>
+    </button>
+    <div class="navbar-collapse" id="navbarCollapse">
+      <ul class="navbar-nav mr-auto">
+        <li class="nav-item"><a class="nav-link" href="#">Summary</a></li>
+        <li class="nav-item"><a class="nav-link" href="#resources">Resources</a></li>
+        <li class="nav-item"><a class="nav-link" href="#tasks">Tasks</a></li>
+      </ul>
+    </div>
+    <code class="d-none d-md-inline navbar-text">
+        [ecstatic_pesquet]
+    </code>
+    </div>
+  </nav>
+
+  <div class="jumbotron mb-0">
+    <div class="container">
+
+      <h1 class="display-3">Nextflow CO<sub>2</sub>e Footprint Report</h1>
+      <h2 class="text-muted mb-4"><samp>[ecstatic_pesquet]</samp> </h2>
+
+      
+          <div class="alert alert-danger mb-4">
+              <h4>Workflow execution completed unsuccessfully!</h4>
+              <p>The exit status of the task that caused the workflow execution to fail was: <code>1</code>.</p>
+              <p>The full error message was:</p>
+              <pre>Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)'
+
+Caused by:
+  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
+
+
+Command executed:
+
+  # check whether it is compressed
+  if [[ "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln" == *.gz ]]; then
+      unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa
+  else
+      mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa
+  fi
+  
+  export TEMP='./'
+  t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v "seq1" | grep -v '*' |         awk '{ print $4}' ORS="	"         >> "scores.txt"
+  
+  # Add metadata info to output file
+  echo "id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp" > "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
+  
+  # Add values
+  scores=$(awk '{sub(/[[:space:]]+$/, "")} 1' scores.txt | tr -s '[:blank:]' ',')
+  echo "seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores" >> "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
+  
+  cat <<-END_VERSIONS > versions.yml
+  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP":
+      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
+      pigz: $(echo $(pigz --version 2>&1) | sed 's/^.*pigz\w*//' ))
+  END_VERSIONS
+
+Command exit status:
+  1
+
+Command output:
+  (empty)
+
+Command error:
+  
+  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
+  
+  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
+
+Work dir:
+  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
+
+Container:
+  quay.io/biocontainers/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0
+
+Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line</pre>
+          </div>
+      
+
+      <dl>
+        <dt>Run times</dt>
+        <dd>
+          <span id="workflow_start">17-Oct-2025 15:38:01</span> - <span id="workflow_complete">17-Oct-2025 15:41:31</span>
+          (<span id="completed_fromnow"></span>duration: <strong>3m 30s</strong>)
+        </dd>
+
+        <dt>Nextflow command</dt>
+        <dd><pre class="nfcommand"><code>nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json -ansi-log false -profile test,docker -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work</code></pre></dd>
+      </dl>
+
+      <dl>
+        <dt>Nextflow version</dt>
+        <dd>version 25.04.6, build 5954 (01-07-2025 11:27 UTC)</dd>
+
+        <dt>nf-co2footprint plugin version</dt>
+        <dd>version 1.0.0</dd>
+      </dl>
+
+      <h3 class="mt-5">Total CO<sub>2</sub>e Footprint Measures</h3>
+      <div class="card-wrap d-flex flex-wrap mt-4 mb-5">
+        <div class="metric-card card p-1">
+          <span class="metric">1.06 g</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
+          <span class="metric-title">CO<sub>2</sub>e emissions</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">2.21 Wh</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
+          <span class="metric-title">Energy consumption</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">50min 46.78s</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
+          <span class="metric-title">Tree sequestration time</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">0.006</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
+          <span class="metric-title">km by car</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">0.002 %</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
+          <span class="metric-title">Flight Paris - London</span>
+        </div>
+      </div>
+
+      <details class="mt-5">
+        <summary>
+          <span class="expandable-label">
+            Without cached tasks:
+          </span>
+        </summary>
+        <div class="card-wrap d-flex flex-wrap mt-4 mb-5" >
+          <div class="metric-card card p-1">
+            <span class="metric">1.06 g</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
+            <span class="metric-title">CO<sub>2</sub>e emissions</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">2.21 Wh</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
+            <span class="metric-title">Energy consumption</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">50min 46.78s</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
+            <span class="metric-title">Tree sequestration time</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">0.006</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
+            <span class="metric-title">km by car</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">0.002 %</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
+            <span class="metric-title">Flight Paris - London</span>
+          </div>
+        </div>
+      </details>
+
+      
+
+    </div>
+  </div>
+
+  <div class="container">
+    <h2 id="resources" style="padding-top: 20px;" class="mb-3">CO<sub>2</sub>e Footprint Measures</h2>
+    <ul class="nav nav-tabs mb-3" id="co2eplot_tabs" role="tablist">
+      <li class="nav-item">
+        <a class="nav-link active" id="co2e-total-plot_tablink" data-toggle="tab" href="#co2e-total-plot_tabpanel" role="tab" aria-controls="co2e-total-plot_tabpanel" aria-expanded="false">
+          All tasks
+        </a>
+      </li>
+      <li class="nav-item">
+        <a class="nav-link" id="co2e-non-cached-plot_tablink" data-toggle="tab" href="#co2e-non-cached-plot_tabpanel" role="tab" aria-controls="co2e-non-cached-plot_tabpanel" aria-expanded="false">
+          Without cached tasks
+        </a>
+      </li>
+    </ul>
+    <div class="tab-content" id="co2eplot_tabcontent">
+      <div class="tab-pane fade show active" id="co2e-total-plot_tabpanel" role="tabpanel">
+        <div id="co2e-total-plot"></div>
+      </div>
+      <div class="tab-pane fade" id="co2e-non-cached-plot_tabpanel" role="tabpanel">
+        <div id="co2e-non-cached-plot"></div>
+      </div>
+    </div>
+    <p class="mt-3">The plot shows the distribution of CO<sub>2</sub>e emissions and corresponding energy consumptions for each workflow process. The values that are displayed when hovering over the plot refer to the CO<sub>2</sub>e emissions.</p>
+  </div>
+
+  <div class="container">
+    <h2 id="tasks" style="padding-top: 20px;">Tasks</h2>
+    <div id="tasks-present-table" class="mb-3">
+      <form class="form-inline" id="nf-form-humanreadable">
+        <label class="mr-sm-2" for="nf-table-humanreadable">Values shown as:</label>
+        <select class="custom-select mb-2 mr-sm-2 mb-sm-0" id="nf-table-humanreadable">
+          <option value="true">Human readable</option>
+          <option value="false">Raw values</option>
+        </select>
+      </form>
+    </div>
+    <div class="container-fluid">
+      <table class="table small table-striped" id="tasks_table"></table>
+    </div>
+    <div id="tasks-omitted-table">
+      (tasks table omitted because the dataset is too big)
+    </div>
+    <p class="mt-3">This table shows information about each task in the workflow. Use the search box on the right
+      to filter rows for specific values. Clicking headers will sort the table by that value and
+      scrolling side to side will reveal more columns.</p>
+  </div>
+
+  <div class="container my-5">
+    <div class="card shadow-sm">
+      <div class="card-body">
+        <h2 id="attribution-and-references" style="padding-top: 20px;">Data Attribution &amp; References</h2>
+        <ul class="pl-3 mb-0">
+          <li class="mb-3">
+            The calculation of these values is based on the carbon footprint computation method
+            developed in the
+            <a href="https://www.green-algorithms.org/" target="_blank" rel="noopener" style="color: #28a745">Green Algorithms</a> project.<br>
+            <span class="font-italic small">
+              Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
+              Adv. Sci. 2021, 2100707.
+              <a href="https://doi.org/10.1002/advs.202100707" target="_blank" rel="noopener">
+                https://doi.org/10.1002/advs.202100707
+              </a>
+            </span>
+          </li>
+          <li class="mb-3">
+            
+              The carbon intensity (CI) values used in the calculation originate from
+              <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">Electricity Maps</a>
+              under the
+              <a href="https://opendatacommons.org/licenses/odbl/1-0/" target="_blank" rel="noopener">Open Database License (ODbL)</a>.<br>
+              <span class="font-italic small">
+                Electricity Maps (2025). 2024 Yearly Carbon Intensity Data (Version January 27, 2025). Electricity Maps.
+                <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">
+                  https://www.electricitymaps.com
+                </a>
+              </span>
+            
+          </li>
+          <li class="mb-3">
+            The processors thermal design power (TDP) values used in the calculation originate from
+            <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">WikiChip</a>
+            under the
+            <a href="https://creativecommons.org/licenses/by-nc-sa/4.0/" target="_blank" rel="noopener">CC BY-NC-SA 4.0</a> license.<br>
+            <span class="font-italic small">
+              WikiChip LLC (2025). CPU Data including Thermal Design Power (TDP) (Version June 20, 2025).
+              WikiChip.
+              <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">
+                https://en.wikichip.org/wiki/WikiChip
+              </a>
+            </span>
+          </li>
+        </ul>
+      </div>
+    </div>
+  </div>
+
+  <div class="container">
+    <div id="options-table">
+      <h2 id="options" style="padding-top: 20px;">Options</h2>
+      <p class="mt-3 mb-3">This table shows the nf-co2footprint plugin options that were used to calculate the CO<sub>2</sub>e footprint measures.</p>
+    </div>
+    <div class="container-fluid">
+      <table class="table small table-striped" id="options_table"></table>
+    </div>
+  </div>
+
+  <footer>
+    <div class="container-fluid">
+      Generated by <a href="https://www.nextflow.io" target="_blank">Nextflow</a>, version 25.04.6
+    </div>
+  </footer>
+
+  <script type="text/javascript">
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t.setAttribute('x-placement',p),U(t,{position:'absolute'}),o},gpuAcceleration:void 0}}},le});
+
+
+
+
+/*!
+  * Bootstrap v4.0.0-beta.2 (https://getbootstrap.com)
+  * Copyright 2011-2017 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors)
+  * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+  */
+var bootstrap=function(t,e,n){"use strict";function i(t,e){for(var n=0;n<e.length;n++){var i=e[n];i.enumerable=i.enumerable||!1,i.configurable=!0,"value"in i&&(i.writable=!0),Object.defineProperty(t,i.key,i)}}e=e&&e.hasOwnProperty("default")?e.default:e,n=n&&n.hasOwnProperty("default")?n.default:n;var s=function(){function t(t){return{}.toString.call(t).match(/\s([a-zA-Z]+)/)[1].toLowerCase()}function n(){return{bindType:r.end,delegateType:r.end,handle:function(t){if(e(t.target).is(this))return t.handleObj.handler.apply(this,arguments)}}}function i(){if(window.QUnit)return!1;var t=document.createElement("bootstrap");for(var e in o)if("undefined"!=typeof t.style[e])return{end:o[e]};return!1}function s(t){var n=this,i=!1;return e(this).one(a.TRANSITION_END,function(){i=!0}),setTimeout(function(){i||a.triggerTransitionEnd(n)},t),this}var r=!1,o={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd 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e&&i(t.prototype,e),n&&i(t,n),t},o=function(t,e){t.prototype=Object.create(e.prototype),t.prototype.constructor=t,t.__proto__=e},a=function(){var t="alert",n=e.fn[t],i={CLOSE:"close.bs.alert",CLOSED:"closed.bs.alert",CLICK_DATA_API:"click.bs.alert.data-api"},o={ALERT:"alert",FADE:"fade",SHOW:"show"},a=function(){function t(t){this._element=t}var n=t.prototype;return n.close=function(t){t=t||this._element;var e=this._getRootElement(t);this._triggerCloseEvent(e).isDefaultPrevented()||this._removeElement(e)},n.dispose=function(){e.removeData(this._element,"bs.alert"),this._element=null},n._getRootElement=function(t){var n=s.getSelectorFromElement(t),i=!1;return n&&(i=e(n)[0]),i||(i=e(t).closest("."+o.ALERT)[0]),i},n._triggerCloseEvent=function(t){var n=e.Event(i.CLOSE);return e(t).trigger(n),n},n._removeElement=function(t){var n=this;e(t).removeClass(o.SHOW),s.supportsTransitionEnd()&&e(t).hasClass(o.FADE)?e(t).one(s.TRANSITION_END,function(e){return n._destroyElement(t,e)}).emulateTransitionEnd(150):this._destroyElement(t)},n._destroyElement=function(t){e(t).detach().trigger(i.CLOSED).remove()},t._jQueryInterface=function(n){return this.each(function(){var i=e(this),s=i.data("bs.alert");s||(s=new t(this),i.data("bs.alert",s)),"close"===n&&s[n](this)})},t._handleDismiss=function(t){return function(e){e&&e.preventDefault(),t.close(this)}},r(t,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}}]),t}();return e(document).on(i.CLICK_DATA_API,{DISMISS:'[data-dismiss="alert"]'}.DISMISS,a._handleDismiss(new a)),e.fn[t]=a._jQueryInterface,e.fn[t].Constructor=a,e.fn[t].noConflict=function(){return e.fn[t]=n,a._jQueryInterface},a}(),l=function(){var t="button",n=e.fn[t],i={ACTIVE:"active",BUTTON:"btn",FOCUS:"focus"},s={DATA_TOGGLE_CARROT:'[data-toggle^="button"]',DATA_TOGGLE:'[data-toggle="buttons"]',INPUT:"input",ACTIVE:".active",BUTTON:".btn"},o={CLICK_DATA_API:"click.bs.button.data-api",FOCUS_BLUR_DATA_API:"focus.bs.button.data-api blur.bs.button.data-api"},a=function(){function t(t){this._element=t}var n=t.prototype;return n.toggle=function(){var t=!0,n=!0,r=e(this._element).closest(s.DATA_TOGGLE)[0];if(r){var o=e(this._element).find(s.INPUT)[0];if(o){if("radio"===o.type)if(o.checked&&e(this._element).hasClass(i.ACTIVE))t=!1;else{var a=e(r).find(s.ACTIVE)[0];a&&e(a).removeClass(i.ACTIVE)}if(t){if(o.hasAttribute("disabled")||r.hasAttribute("disabled")||o.classList.contains("disabled")||r.classList.contains("disabled"))return;o.checked=!e(this._element).hasClass(i.ACTIVE),e(o).trigger("change")}o.focus(),n=!1}}n&&this._element.setAttribute("aria-pressed",!e(this._element).hasClass(i.ACTIVE)),t&&e(this._element).toggleClass(i.ACTIVE)},n.dispose=function(){e.removeData(this._element,"bs.button"),this._element=null},t._jQueryInterface=function(n){return this.each(function(){var i=e(this).data("bs.button");i||(i=new t(this),e(this).data("bs.button",i)),"toggle"===n&&i[n]()})},r(t,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}}]),t}();return e(document).on(o.CLICK_DATA_API,s.DATA_TOGGLE_CARROT,function(t){t.preventDefault();var n=t.target;e(n).hasClass(i.BUTTON)||(n=e(n).closest(s.BUTTON)),a._jQueryInterface.call(e(n),"toggle")}).on(o.FOCUS_BLUR_DATA_API,s.DATA_TOGGLE_CARROT,function(t){var n=e(t.target).closest(s.BUTTON)[0];e(n).toggleClass(i.FOCUS,/^focus(in)?$/.test(t.type))}),e.fn[t]=a._jQueryInterface,e.fn[t].Constructor=a,e.fn[t].noConflict=function(){return e.fn[t]=n,a._jQueryInterface},a}(),h=function(){var t="carousel",n="bs.carousel",i="."+n,o=e.fn[t],a={interval:5e3,keyboard:!0,slide:!1,pause:"hover",wrap:!0},l={interval:"(number|boolean)",keyboard:"boolean",slide:"(boolean|string)",pause:"(string|boolean)",wrap:"boolean"},h={NEXT:"next",PREV:"prev",LEFT:"left",RIGHT:"right"},c={SLIDE:"slide"+i,SLID:"slid"+i,KEYDOWN:"keydown"+i,MOUSEENTER:"mouseenter"+i,MOUSELEAVE:"mouseleave"+i,TOUCHEND:"touchend"+i,LOAD_DATA_API:"load.bs.carousel.data-api",CLICK_DATA_API:"click.bs.carousel.data-api"},u={CAROUSEL:"carousel",ACTIVE:"active",SLIDE:"slide",RIGHT:"carousel-item-right",LEFT:"carousel-item-left",NEXT:"carousel-item-next",PREV:"carousel-item-prev",ITEM:"carousel-item"},d={ACTIVE:".active",ACTIVE_ITEM:".active.carousel-item",ITEM:".carousel-item",NEXT_PREV:".carousel-item-next, .carousel-item-prev",INDICATORS:".carousel-indicators",DATA_SLIDE:"[data-slide], [data-slide-to]",DATA_RIDE:'[data-ride="carousel"]'},f=function(){function o(t,n){this._items=null,this._interval=null,this._activeElement=null,this._isPaused=!1,this._isSliding=!1,this.touchTimeout=null,this._config=this._getConfig(n),this._element=e(t)[0],this._indicatorsElement=e(this._element).find(d.INDICATORS)[0],this._addEventListeners()}var f=o.prototype;return f.next=function(){this._isSliding||this._slide(h.NEXT)},f.nextWhenVisible=function(){!document.hidden&&e(this._element).is(":visible")&&"hidden"!==e(this._element).css("visibility")&&this.next()},f.prev=function(){this._isSliding||this._slide(h.PREV)},f.pause=function(t){t||(this._isPaused=!0),e(this._element).find(d.NEXT_PREV)[0]&&s.supportsTransitionEnd()&&(s.triggerTransitionEnd(this._element),this.cycle(!0)),clearInterval(this._interval),this._interval=null},f.cycle=function(t){t||(this._isPaused=!1),this._interval&&(clearInterval(this._interval),this._interval=null),this._config.interval&&!this._isPaused&&(this._interval=setInterval((document.visibilityState?this.nextWhenVisible:this.next).bind(this),this._config.interval))},f.to=function(t){var n=this;this._activeElement=e(this._element).find(d.ACTIVE_ITEM)[0];var i=this._getItemIndex(this._activeElement);if(!(t>this._items.length-1||t<0))if(this._isSliding)e(this._element).one(c.SLID,function(){return n.to(t)});else{if(i===t)return this.pause(),void this.cycle();var s=t>i?h.NEXT:h.PREV;this._slide(s,this._items[t])}},f.dispose=function(){e(this._element).off(i),e.removeData(this._element,n),this._items=null,this._config=null,this._element=null,this._interval=null,this._isPaused=null,this._isSliding=null,this._activeElement=null,this._indicatorsElement=null},f._getConfig=function(n){return n=e.extend({},a,n),s.typeCheckConfig(t,n,l),n},f._addEventListeners=function(){var t=this;this._config.keyboard&&e(this._element).on(c.KEYDOWN,function(e){return t._keydown(e)}),"hover"===this._config.pause&&(e(this._element).on(c.MOUSEENTER,function(e){return t.pause(e)}).on(c.MOUSELEAVE,function(e){return t.cycle(e)}),"ontouchstart"in document.documentElement&&e(this._element).on(c.TOUCHEND,function(){t.pause(),t.touchTimeout&&clearTimeout(t.touchTimeout),t.touchTimeout=setTimeout(function(e){return t.cycle(e)},500+t._config.interval)}))},f._keydown=function(t){if(!/input|textarea/i.test(t.target.tagName))switch(t.which){case 37:t.preventDefault(),this.prev();break;case 39:t.preventDefault(),this.next();break;default:return}},f._getItemIndex=function(t){return this._items=e.makeArray(e(t).parent().find(d.ITEM)),this._items.indexOf(t)},f._getItemByDirection=function(t,e){var n=t===h.NEXT,i=t===h.PREV,s=this._getItemIndex(e),r=this._items.length-1;if((i&&0===s||n&&s===r)&&!this._config.wrap)return e;var o=(s+(t===h.PREV?-1:1))%this._items.length;return-1===o?this._items[this._items.length-1]:this._items[o]},f._triggerSlideEvent=function(t,n){var i=this._getItemIndex(t),s=this._getItemIndex(e(this._element).find(d.ACTIVE_ITEM)[0]),r=e.Event(c.SLIDE,{relatedTarget:t,direction:n,from:s,to:i});return e(this._element).trigger(r),r},f._setActiveIndicatorElement=function(t){if(this._indicatorsElement){e(this._indicatorsElement).find(d.ACTIVE).removeClass(u.ACTIVE);var n=this._indicatorsElement.children[this._getItemIndex(t)];n&&e(n).addClass(u.ACTIVE)}},f._slide=function(t,n){var i,r,o,a=this,l=e(this._element).find(d.ACTIVE_ITEM)[0],f=this._getItemIndex(l),_=n||l&&this._getItemByDirection(t,l),g=this._getItemIndex(_),m=Boolean(this._interval);if(t===h.NEXT?(i=u.LEFT,r=u.NEXT,o=h.LEFT):(i=u.RIGHT,r=u.PREV,o=h.RIGHT),_&&e(_).hasClass(u.ACTIVE))this._isSliding=!1;else if(!this._triggerSlideEvent(_,o).isDefaultPrevented()&&l&&_){this._isSliding=!0,m&&this.pause(),this._setActiveIndicatorElement(_);var p=e.Event(c.SLID,{relatedTarget:_,direction:o,from:f,to:g});s.supportsTransitionEnd()&&e(this._element).hasClass(u.SLIDE)?(e(_).addClass(r),s.reflow(_),e(l).addClass(i),e(_).addClass(i),e(l).one(s.TRANSITION_END,function(){e(_).removeClass(i+" "+r).addClass(u.ACTIVE),e(l).removeClass(u.ACTIVE+" "+r+" "+i),a._isSliding=!1,setTimeout(function(){return e(a._element).trigger(p)},0)}).emulateTransitionEnd(600)):(e(l).removeClass(u.ACTIVE),e(_).addClass(u.ACTIVE),this._isSliding=!1,e(this._element).trigger(p)),m&&this.cycle()}},o._jQueryInterface=function(t){return this.each(function(){var i=e(this).data(n),s=e.extend({},a,e(this).data());"object"==typeof t&&e.extend(s,t);var r="string"==typeof t?t:s.slide;if(i||(i=new o(this,s),e(this).data(n,i)),"number"==typeof t)i.to(t);else if("string"==typeof r){if("undefined"==typeof i[r])throw new Error('No method named "'+r+'"');i[r]()}else s.interval&&(i.pause(),i.cycle())})},o._dataApiClickHandler=function(t){var i=s.getSelectorFromElement(this);if(i){var r=e(i)[0];if(r&&e(r).hasClass(u.CAROUSEL)){var a=e.extend({},e(r).data(),e(this).data()),l=this.getAttribute("data-slide-to");l&&(a.interval=!1),o._jQueryInterface.call(e(r),a),l&&e(r).data(n).to(l),t.preventDefault()}}},r(o,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return a}}]),o}();return e(document).on(c.CLICK_DATA_API,d.DATA_SLIDE,f._dataApiClickHandler),e(window).on(c.LOAD_DATA_API,function(){e(d.DATA_RIDE).each(function(){var t=e(this);f._jQueryInterface.call(t,t.data())})}),e.fn[t]=f._jQueryInterface,e.fn[t].Constructor=f,e.fn[t].noConflict=function(){return e.fn[t]=o,f._jQueryInterface},f}(),c=function(){var t="collapse",n="bs.collapse",i=e.fn[t],o={toggle:!0,parent:""},a={toggle:"boolean",parent:"(string|element)"},l={SHOW:"show.bs.collapse",SHOWN:"shown.bs.collapse",HIDE:"hide.bs.collapse",HIDDEN:"hidden.bs.collapse",CLICK_DATA_API:"click.bs.collapse.data-api"},h={SHOW:"show",COLLAPSE:"collapse",COLLAPSING:"collapsing",COLLAPSED:"collapsed"},c={WIDTH:"width",HEIGHT:"height"},u={ACTIVES:".show, .collapsing",DATA_TOGGLE:'[data-toggle="collapse"]'},d=function(){function i(t,n){this._isTransitioning=!1,this._element=t,this._config=this._getConfig(n),this._triggerArray=e.makeArray(e('[data-toggle="collapse"][href="#'+t.id+'"],[data-toggle="collapse"][data-target="#'+t.id+'"]'));for(var i=e(u.DATA_TOGGLE),r=0;r<i.length;r++){var o=i[r],a=s.getSelectorFromElement(o);null!==a&&e(a).filter(t).length>0&&this._triggerArray.push(o)}this._parent=this._config.parent?this._getParent():null,this._config.parent||this._addAriaAndCollapsedClass(this._element,this._triggerArray),this._config.toggle&&this.toggle()}var d=i.prototype;return d.toggle=function(){e(this._element).hasClass(h.SHOW)?this.hide():this.show()},d.show=function(){var t=this;if(!this._isTransitioning&&!e(this._element).hasClass(h.SHOW)){var r,o;if(this._parent&&((r=e.makeArray(e(this._parent).children().children(u.ACTIVES))).length||(r=null)),!(r&&(o=e(r).data(n))&&o._isTransitioning)){var a=e.Event(l.SHOW);if(e(this._element).trigger(a),!a.isDefaultPrevented()){r&&(i._jQueryInterface.call(e(r),"hide"),o||e(r).data(n,null));var c=this._getDimension();e(this._element).removeClass(h.COLLAPSE).addClass(h.COLLAPSING),this._element.style[c]=0,this._triggerArray.length&&e(this._triggerArray).removeClass(h.COLLAPSED).attr("aria-expanded",!0),this.setTransitioning(!0);var d=function(){e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).addClass(h.SHOW),t._element.style[c]="",t.setTransitioning(!1),e(t._element).trigger(l.SHOWN)};if(s.supportsTransitionEnd()){var f="scroll"+(c[0].toUpperCase()+c.slice(1));e(this._element).one(s.TRANSITION_END,d).emulateTransitionEnd(600),this._element.style[c]=this._element[f]+"px"}else d()}}}},d.hide=function(){var t=this;if(!this._isTransitioning&&e(this._element).hasClass(h.SHOW)){var n=e.Event(l.HIDE);if(e(this._element).trigger(n),!n.isDefaultPrevented()){var i=this._getDimension();if(this._element.style[i]=this._element.getBoundingClientRect()[i]+"px",s.reflow(this._element),e(this._element).addClass(h.COLLAPSING).removeClass(h.COLLAPSE).removeClass(h.SHOW),this._triggerArray.length)for(var r=0;r<this._triggerArray.length;r++){var o=this._triggerArray[r],a=s.getSelectorFromElement(o);null!==a&&(e(a).hasClass(h.SHOW)||e(o).addClass(h.COLLAPSED).attr("aria-expanded",!1))}this.setTransitioning(!0);var c=function(){t.setTransitioning(!1),e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).trigger(l.HIDDEN)};this._element.style[i]="",s.supportsTransitionEnd()?e(this._element).one(s.TRANSITION_END,c).emulateTransitionEnd(600):c()}}},d.setTransitioning=function(t){this._isTransitioning=t},d.dispose=function(){e.removeData(this._element,n),this._config=null,this._parent=null,this._element=null,this._triggerArray=null,this._isTransitioning=null},d._getConfig=function(n){return n=e.extend({},o,n),n.toggle=Boolean(n.toggle),s.typeCheckConfig(t,n,a),n},d._getDimension=function(){return e(this._element).hasClass(c.WIDTH)?c.WIDTH:c.HEIGHT},d._getParent=function(){var t=this,n=null;s.isElement(this._config.parent)?(n=this._config.parent,"undefined"!=typeof this._config.parent.jquery&&(n=this._config.parent[0])):n=e(this._config.parent)[0];var r='[data-toggle="collapse"][data-parent="'+this._config.parent+'"]';return e(n).find(r).each(function(e,n){t._addAriaAndCollapsedClass(i._getTargetFromElement(n),[n])}),n},d._addAriaAndCollapsedClass=function(t,n){if(t){var i=e(t).hasClass(h.SHOW);n.length&&e(n).toggleClass(h.COLLAPSED,!i).attr("aria-expanded",i)}},i._getTargetFromElement=function(t){var n=s.getSelectorFromElement(t);return n?e(n)[0]:null},i._jQueryInterface=function(t){return this.each(function(){var s=e(this),r=s.data(n),a=e.extend({},o,s.data(),"object"==typeof t&&t);if(!r&&a.toggle&&/show|hide/.test(t)&&(a.toggle=!1),r||(r=new i(this,a),s.data(n,r)),"string"==typeof t){if("undefined"==typeof r[t])throw new Error('No method named "'+t+'"');r[t]()}})},r(i,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return o}}]),i}();return e(document).on(l.CLICK_DATA_API,u.DATA_TOGGLE,function(t){"A"===t.currentTarget.tagName&&t.preventDefault();var i=e(this),r=s.getSelectorFromElement(this);e(r).each(function(){var t=e(this),s=t.data(n)?"toggle":i.data();d._jQueryInterface.call(t,s)})}),e.fn[t]=d._jQueryInterface,e.fn[t].Constructor=d,e.fn[t].noConflict=function(){return e.fn[t]=i,d._jQueryInterface},d}(),u=function(){if("undefined"==typeof n)throw new Error("Bootstrap dropdown require Popper.js (https://popper.js.org)");var t="dropdown",i="bs.dropdown",o="."+i,a=e.fn[t],l=new RegExp("38|40|27"),h={HIDE:"hide"+o,HIDDEN:"hidden"+o,SHOW:"show"+o,SHOWN:"shown"+o,CLICK:"click"+o,CLICK_DATA_API:"click.bs.dropdown.data-api",KEYDOWN_DATA_API:"keydown.bs.dropdown.data-api",KEYUP_DATA_API:"keyup.bs.dropdown.data-api"},c={DISABLED:"disabled",SHOW:"show",DROPUP:"dropup",MENURIGHT:"dropdown-menu-right",MENULEFT:"dropdown-menu-left"},u={DATA_TOGGLE:'[data-toggle="dropdown"]',FORM_CHILD:".dropdown form",MENU:".dropdown-menu",NAVBAR_NAV:".navbar-nav",VISIBLE_ITEMS:".dropdown-menu .dropdown-item:not(.disabled)"},d={TOP:"top-start",TOPEND:"top-end",BOTTOM:"bottom-start",BOTTOMEND:"bottom-end"},f={offset:0,flip:!0},_={offset:"(number|string|function)",flip:"boolean"},g=function(){function a(t,e){this._element=t,this._popper=null,this._config=this._getConfig(e),this._menu=this._getMenuElement(),this._inNavbar=this._detectNavbar(),this._addEventListeners()}var g=a.prototype;return g.toggle=function(){if(!this._element.disabled&&!e(this._element).hasClass(c.DISABLED)){var t=a._getParentFromElement(this._element),i=e(this._menu).hasClass(c.SHOW);if(a._clearMenus(),!i){var s={relatedTarget:this._element},r=e.Event(h.SHOW,s);if(e(t).trigger(r),!r.isDefaultPrevented()){var o=this._element;e(t).hasClass(c.DROPUP)&&(e(this._menu).hasClass(c.MENULEFT)||e(this._menu).hasClass(c.MENURIGHT))&&(o=t),this._popper=new n(o,this._menu,this._getPopperConfig()),"ontouchstart"in document.documentElement&&!e(t).closest(u.NAVBAR_NAV).length&&e("body").children().on("mouseover",null,e.noop),this._element.focus(),this._element.setAttribute("aria-expanded",!0),e(this._menu).toggleClass(c.SHOW),e(t).toggleClass(c.SHOW).trigger(e.Event(h.SHOWN,s))}}}},g.dispose=function(){e.removeData(this._element,i),e(this._element).off(o),this._element=null,this._menu=null,null!==this._popper&&this._popper.destroy(),this._popper=null},g.update=function(){this._inNavbar=this._detectNavbar(),null!==this._popper&&this._popper.scheduleUpdate()},g._addEventListeners=function(){var t=this;e(this._element).on(h.CLICK,function(e){e.preventDefault(),e.stopPropagation(),t.toggle()})},g._getConfig=function(n){return n=e.extend({},this.constructor.Default,e(this._element).data(),n),s.typeCheckConfig(t,n,this.constructor.DefaultType),n},g._getMenuElement=function(){if(!this._menu){var t=a._getParentFromElement(this._element);this._menu=e(t).find(u.MENU)[0]}return this._menu},g._getPlacement=function(){var t=e(this._element).parent(),n=d.BOTTOM;return t.hasClass(c.DROPUP)?(n=d.TOP,e(this._menu).hasClass(c.MENURIGHT)&&(n=d.TOPEND)):e(this._menu).hasClass(c.MENURIGHT)&&(n=d.BOTTOMEND),n},g._detectNavbar=function(){return e(this._element).closest(".navbar").length>0},g._getPopperConfig=function(){var t=this,n={};"function"==typeof this._config.offset?n.fn=function(n){return n.offsets=e.extend({},n.offsets,t._config.offset(n.offsets)||{}),n}:n.offset=this._config.offset;var i={placement:this._getPlacement(),modifiers:{offset:n,flip:{enabled:this._config.flip}}};return this._inNavbar&&(i.modifiers.applyStyle={enabled:!this._inNavbar}),i},a._jQueryInterface=function(t){return this.each(function(){var n=e(this).data(i),s="object"==typeof t?t:null;if(n||(n=new a(this,s),e(this).data(i,n)),"string"==typeof t){if("undefined"==typeof n[t])throw new Error('No method named "'+t+'"');n[t]()}})},a._clearMenus=function(t){if(!t||3!==t.which&&("keyup"!==t.type||9===t.which))for(var n=e.makeArray(e(u.DATA_TOGGLE)),s=0;s<n.length;s++){var r=a._getParentFromElement(n[s]),o=e(n[s]).data(i),l={relatedTarget:n[s]};if(o){var d=o._menu;if(e(r).hasClass(c.SHOW)&&!(t&&("click"===t.type&&/input|textarea/i.test(t.target.tagName)||"keyup"===t.type&&9===t.which)&&e.contains(r,t.target))){var f=e.Event(h.HIDE,l);e(r).trigger(f),f.isDefaultPrevented()||("ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),n[s].setAttribute("aria-expanded","false"),e(d).removeClass(c.SHOW),e(r).removeClass(c.SHOW).trigger(e.Event(h.HIDDEN,l)))}}}},a._getParentFromElement=function(t){var n,i=s.getSelectorFromElement(t);return i&&(n=e(i)[0]),n||t.parentNode},a._dataApiKeydownHandler=function(t){if(!(!l.test(t.which)||/button/i.test(t.target.tagName)&&32===t.which||/input|textarea/i.test(t.target.tagName)||(t.preventDefault(),t.stopPropagation(),this.disabled||e(this).hasClass(c.DISABLED)))){var n=a._getParentFromElement(this),i=e(n).hasClass(c.SHOW);if((i||27===t.which&&32===t.which)&&(!i||27!==t.which&&32!==t.which)){var s=e(n).find(u.VISIBLE_ITEMS).get();if(s.length){var r=s.indexOf(t.target);38===t.which&&r>0&&r--,40===t.which&&r<s.length-1&&r++,r<0&&(r=0),s[r].focus()}}else{if(27===t.which){var o=e(n).find(u.DATA_TOGGLE)[0];e(o).trigger("focus")}e(this).trigger("click")}}},r(a,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return f}},{key:"DefaultType",get:function(){return _}}]),a}();return e(document).on(h.KEYDOWN_DATA_API,u.DATA_TOGGLE,g._dataApiKeydownHandler).on(h.KEYDOWN_DATA_API,u.MENU,g._dataApiKeydownHandler).on(h.CLICK_DATA_API+" "+h.KEYUP_DATA_API,g._clearMenus).on(h.CLICK_DATA_API,u.DATA_TOGGLE,function(t){t.preventDefault(),t.stopPropagation(),g._jQueryInterface.call(e(this),"toggle")}).on(h.CLICK_DATA_API,u.FORM_CHILD,function(t){t.stopPropagation()}),e.fn[t]=g._jQueryInterface,e.fn[t].Constructor=g,e.fn[t].noConflict=function(){return e.fn[t]=a,g._jQueryInterface},g}(),d=function(){var t="modal",n=".bs.modal",i=e.fn[t],o={backdrop:!0,keyboard:!0,focus:!0,show:!0},a={backdrop:"(boolean|string)",keyboard:"boolean",focus:"boolean",show:"boolean"},l={HIDE:"hide.bs.modal",HIDDEN:"hidden.bs.modal",SHOW:"show.bs.modal",SHOWN:"shown.bs.modal",FOCUSIN:"focusin.bs.modal",RESIZE:"resize.bs.modal",CLICK_DISMISS:"click.dismiss.bs.modal",KEYDOWN_DISMISS:"keydown.dismiss.bs.modal",MOUSEUP_DISMISS:"mouseup.dismiss.bs.modal",MOUSEDOWN_DISMISS:"mousedown.dismiss.bs.modal",CLICK_DATA_API:"click.bs.modal.data-api"},h={SCROLLBAR_MEASURER:"modal-scrollbar-measure",BACKDROP:"modal-backdrop",OPEN:"modal-open",FADE:"fade",SHOW:"show"},c={DIALOG:".modal-dialog",DATA_TOGGLE:'[data-toggle="modal"]',DATA_DISMISS:'[data-dismiss="modal"]',FIXED_CONTENT:".fixed-top, .fixed-bottom, .is-fixed, .sticky-top",STICKY_CONTENT:".sticky-top",NAVBAR_TOGGLER:".navbar-toggler"},u=function(){function i(t,n){this._config=this._getConfig(n),this._element=t,this._dialog=e(t).find(c.DIALOG)[0],this._backdrop=null,this._isShown=!1,this._isBodyOverflowing=!1,this._ignoreBackdropClick=!1,this._originalBodyPadding=0,this._scrollbarWidth=0}var u=i.prototype;return u.toggle=function(t){return this._isShown?this.hide():this.show(t)},u.show=function(t){var n=this;if(!this._isTransitioning&&!this._isShown){s.supportsTransitionEnd()&&e(this._element).hasClass(h.FADE)&&(this._isTransitioning=!0);var i=e.Event(l.SHOW,{relatedTarget:t});e(this._element).trigger(i),this._isShown||i.isDefaultPrevented()||(this._isShown=!0,this._checkScrollbar(),this._setScrollbar(),this._adjustDialog(),e(document.body).addClass(h.OPEN),this._setEscapeEvent(),this._setResizeEvent(),e(this._element).on(l.CLICK_DISMISS,c.DATA_DISMISS,function(t){return 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n._hideModal(t)}).emulateTransitionEnd(300):this._hideModal()}}},u.dispose=function(){e.removeData(this._element,"bs.modal"),e(window,document,this._element,this._backdrop).off(n),this._config=null,this._element=null,this._dialog=null,this._backdrop=null,this._isShown=null,this._isBodyOverflowing=null,this._ignoreBackdropClick=null,this._scrollbarWidth=null},u.handleUpdate=function(){this._adjustDialog()},u._getConfig=function(n){return n=e.extend({},o,n),s.typeCheckConfig(t,n,a),n},u._showElement=function(t){var n=this,i=s.supportsTransitionEnd()&&e(this._element).hasClass(h.FADE);this._element.parentNode&&this._element.parentNode.nodeType===Node.ELEMENT_NODE||document.body.appendChild(this._element),this._element.style.display="block",this._element.removeAttribute("aria-hidden"),this._element.scrollTop=0,i&&s.reflow(this._element),e(this._element).addClass(h.SHOW),this._config.focus&&this._enforceFocus();var r=e.Event(l.SHOWN,{relatedTarget:t}),o=function(){n._config.focus&&n._element.focus(),n._isTransitioning=!1,e(n._element).trigger(r)};i?e(this._dialog).one(s.TRANSITION_END,o).emulateTransitionEnd(300):o()},u._enforceFocus=function(){var t=this;e(document).off(l.FOCUSIN).on(l.FOCUSIN,function(n){document===n.target||t._element===n.target||e(t._element).has(n.target).length||t._element.focus()})},u._setEscapeEvent=function(){var t=this;this._isShown&&this._config.keyboard?e(this._element).on(l.KEYDOWN_DISMISS,function(e){27===e.which&&(e.preventDefault(),t.hide())}):this._isShown||e(this._element).off(l.KEYDOWN_DISMISS)},u._setResizeEvent=function(){var t=this;this._isShown?e(window).on(l.RESIZE,function(e){return t.handleUpdate(e)}):e(window).off(l.RESIZE)},u._hideModal=function(){var t=this;this._element.style.display="none",this._element.setAttribute("aria-hidden",!0),this._isTransitioning=!1,this._showBackdrop(function(){e(document.body).removeClass(h.OPEN),t._resetAdjustments(),t._resetScrollbar(),e(t._element).trigger(l.HIDDEN)})},u._removeBackdrop=function(){this._backdrop&&(e(this._backdrop).remove(),this._backdrop=null)},u._showBackdrop=function(t){var n=this,i=e(this._element).hasClass(h.FADE)?h.FADE:"";if(this._isShown&&this._config.backdrop){var r=s.supportsTransitionEnd()&&i;if(this._backdrop=document.createElement("div"),this._backdrop.className=h.BACKDROP,i&&e(this._backdrop).addClass(i),e(this._backdrop).appendTo(document.body),e(this._element).on(l.CLICK_DISMISS,function(t){n._ignoreBackdropClick?n._ignoreBackdropClick=!1:t.target===t.currentTarget&&("static"===n._config.backdrop?n._element.focus():n.hide())}),r&&s.reflow(this._backdrop),e(this._backdrop).addClass(h.SHOW),!t)return;if(!r)return void 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t=this;if(this._isBodyOverflowing){e(c.FIXED_CONTENT).each(function(n,i){var s=e(i)[0].style.paddingRight,r=e(i).css("padding-right");e(i).data("padding-right",s).css("padding-right",parseFloat(r)+t._scrollbarWidth+"px")}),e(c.STICKY_CONTENT).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)-t._scrollbarWidth+"px")}),e(c.NAVBAR_TOGGLER).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)+t._scrollbarWidth+"px")});var n=document.body.style.paddingRight,i=e("body").css("padding-right");e("body").data("padding-right",n).css("padding-right",parseFloat(i)+this._scrollbarWidth+"px")}},u._resetScrollbar=function(){e(c.FIXED_CONTENT).each(function(t,n){var i=e(n).data("padding-right");"undefined"!=typeof i&&e(n).css("padding-right",i).removeData("padding-right")}),e(c.STICKY_CONTENT+", 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r=e.contains(this.element.ownerDocument.documentElement,this.element);if(i.isDefaultPrevented()||!r)return;var a=this.getTipElement(),l=s.getUID(this.constructor.NAME);a.setAttribute("id",l),this.element.setAttribute("aria-describedby",l),this.setContent(),this.config.animation&&e(a).addClass(f.FADE);var h="function"==typeof this.config.placement?this.config.placement.call(this,a,this.element):this.config.placement,c=this._getAttachment(h);this.addAttachmentClass(c);var d=!1===this.config.container?document.body:e(this.config.container);e(a).data(this.constructor.DATA_KEY,this),e.contains(this.element.ownerDocument.documentElement,this.tip)||e(a).appendTo(d),e(this.element).trigger(this.constructor.Event.INSERTED),this._popper=new n(this.element,a,{placement:c,modifiers:{offset:{offset:this.config.offset},flip:{behavior:this.config.fallbackPlacement},arrow:{element:_.ARROW}},onCreate:function(e){e.originalPlacement!==e.placement&&t._handlePopperPlacementChange(e)},onUpdate:function(e){t._handlePopperPlacementChange(e)}}),e(a).addClass(f.SHOW),"ontouchstart"in document.documentElement&&e("body").children().on("mouseover",null,e.noop);var g=function(){t.config.animation&&t._fixTransition();var n=t._hoverState;t._hoverState=null,e(t.element).trigger(t.constructor.Event.SHOWN),n===u.OUT&&t._leave(null,t)};s.supportsTransitionEnd()&&e(this.tip).hasClass(f.FADE)?e(this.tip).one(s.TRANSITION_END,g).emulateTransitionEnd(o._TRANSITION_DURATION):g()}},m.hide=function(t){var n=this,i=this.getTipElement(),r=e.Event(this.constructor.Event.HIDE),o=function(){n._hoverState!==u.SHOW&&i.parentNode&&i.parentNode.removeChild(i),n._cleanTipClass(),n.element.removeAttribute("aria-describedby"),e(n.element).trigger(n.constructor.Event.HIDDEN),null!==n._popper&&n._popper.destroy(),t&&t()};e(this.element).trigger(r),r.isDefaultPrevented()||(e(i).removeClass(f.SHOW),"ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),this._activeTrigger[g.CLICK]=!1,this._activeTrigger[g.FOCUS]=!1,this._activeTrigger[g.HOVER]=!1,s.supportsTransitionEnd()&&e(this.tip).hasClass(f.FADE)?e(i).one(s.TRANSITION_END,o).emulateTransitionEnd(150):o(),this._hoverState="")},m.update=function(){null!==this._popper&&this._popper.scheduleUpdate()},m.isWithContent=function(){return Boolean(this.getTitle())},m.addAttachmentClass=function(t){e(this.getTipElement()).addClass("bs-tooltip-"+t)},m.getTipElement=function(){return this.tip=this.tip||e(this.config.template)[0],this.tip},m.setContent=function(){var t=e(this.getTipElement());this.setElementContent(t.find(_.TOOLTIP_INNER),this.getTitle()),t.removeClass(f.FADE+" "+f.SHOW)},m.setElementContent=function(t,n){var i=this.config.html;"object"==typeof n&&(n.nodeType||n.jquery)?i?e(n).parent().is(t)||t.empty().append(n):t.text(e(n).text()):t[i?"html":"text"](n)},m.getTitle=function(){var t=this.element.getAttribute("data-original-title");return t||(t="function"==typeof this.config.title?this.config.title.call(this.element):this.config.title),t},m._getAttachment=function(t){return h[t.toUpperCase()]},m._setListeners=function(){var t=this;this.config.trigger.split(" ").forEach(function(n){if("click"===n)e(t.element).on(t.constructor.Event.CLICK,t.config.selector,function(e){return t.toggle(e)});else if(n!==g.MANUAL){var i=n===g.HOVER?t.constructor.Event.MOUSEENTER:t.constructor.Event.FOCUSIN,s=n===g.HOVER?t.constructor.Event.MOUSELEAVE:t.constructor.Event.FOCUSOUT;e(t.element).on(i,t.config.selector,function(e){return t._enter(e)}).on(s,t.config.selector,function(e){return t._leave(e)})}e(t.element).closest(".modal").on("hide.bs.modal",function(){return t.hide()})}),this.config.selector?this.config=e.extend({},this.config,{trigger:"manual",selector:""}):this._fixTitle()},m._fixTitle=function(){var t=typeof this.element.getAttribute("data-original-title");(this.element.getAttribute("title")||"string"!==t)&&(this.element.setAttribute("data-original-title",this.element.getAttribute("title")||""),this.element.setAttribute("title",""))},m._enter=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusin"===t.type?g.FOCUS:g.HOVER]=!0),e(n.getTipElement()).hasClass(f.SHOW)||n._hoverState===u.SHOW?n._hoverState=u.SHOW:(clearTimeout(n._timeout),n._hoverState=u.SHOW,n.config.delay&&n.config.delay.show?n._timeout=setTimeout(function(){n._hoverState===u.SHOW&&n.show()},n.config.delay.show):n.show())},m._leave=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusout"===t.type?g.FOCUS:g.HOVER]=!1),n._isWithActiveTrigger()||(clearTimeout(n._timeout),n._hoverState=u.OUT,n.config.delay&&n.config.delay.hide?n._timeout=setTimeout(function(){n._hoverState===u.OUT&&n.hide()},n.config.delay.hide):n.hide())},m._isWithActiveTrigger=function(){for(var t in 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+sWidthOrig:null};m.defaults={aaData:null,aaSorting:[[0,"asc"]],aaSortingFixed:[],ajax:null,aLengthMenu:[10,25,50,100],aoColumns:null,aoColumnDefs:null,aoSearchCols:[],asStripeClasses:null,bAutoWidth:!0,bDeferRender:!1,bDestroy:!1,bFilter:!0,bInfo:!0,bLengthChange:!0,bPaginate:!0,bProcessing:!1,bRetrieve:!1,bScrollCollapse:!1,bServerSide:!1,bSort:!0,bSortMulti:!0,bSortCellsTop:!1,bSortClasses:!0,bStateSave:!1,fnCreatedRow:null,fnDrawCallback:null,fnFooterCallback:null,fnFormatNumber:function(a){return a.toString().replace(/\B(?=(\d{3})+(?!\d))/g,
+this.oLanguage.sThousands)},fnHeaderCallback:null,fnInfoCallback:null,fnInitComplete:null,fnPreDrawCallback:null,fnRowCallback:null,fnServerData:null,fnServerParams:null,fnStateLoadCallback:function(a){try{return JSON.parse((-1===a.iStateDuration?sessionStorage:localStorage).getItem("DataTables_"+a.sInstance+"_"+location.pathname))}catch(b){}},fnStateLoadParams:null,fnStateLoaded:null,fnStateSaveCallback:function(a,b){try{(-1===a.iStateDuration?sessionStorage:localStorage).setItem("DataTables_"+a.sInstance+
+"_"+location.pathname,JSON.stringify(b))}catch(c){}},fnStateSaveParams:null,iStateDuration:7200,iDeferLoading:null,iDisplayLength:10,iDisplayStart:0,iTabIndex:0,oClasses:{},oLanguage:{oAria:{sSortAscending:": activate to sort column ascending",sSortDescending:": activate to sort column descending"},oPaginate:{sFirst:"First",sLast:"Last",sNext:"Next",sPrevious:"Previous"},sEmptyTable:"No data available in table",sInfo:"Showing _START_ to _END_ of _TOTAL_ entries",sInfoEmpty:"Showing 0 to 0 of 0 entries",
+sInfoFiltered:"(filtered from _MAX_ total entries)",sInfoPostFix:"",sDecimal:"",sThousands:",",sLengthMenu:"Show _MENU_ entries",sLoadingRecords:"Loading...",sProcessing:"Processing...",sSearch:"Search:",sSearchPlaceholder:"",sUrl:"",sZeroRecords:"No matching records found"},oSearch:h.extend({},m.models.oSearch),sAjaxDataProp:"data",sAjaxSource:null,sDom:"lfrtip",searchDelay:null,sPaginationType:"simple_numbers",sScrollX:"",sScrollXInner:"",sScrollY:"",sServerMethod:"GET",renderer:null,rowId:"DT_RowId"};
+X(m.defaults);m.defaults.column={aDataSort:null,iDataSort:-1,asSorting:["asc","desc"],bSearchable:!0,bSortable:!0,bVisible:!0,fnCreatedCell:null,mData:null,mRender:null,sCellType:"td",sClass:"",sContentPadding:"",sDefaultContent:null,sName:"",sSortDataType:"std",sTitle:null,sType:null,sWidth:null};X(m.defaults.column);m.models.oSettings={oFeatures:{bAutoWidth:null,bDeferRender:null,bFilter:null,bInfo:null,bLengthChange:null,bPaginate:null,bProcessing:null,bServerSide:null,bSort:null,bSortMulti:null,
+bSortClasses:null,bStateSave:null},oScroll:{bCollapse:null,iBarWidth:0,sX:null,sXInner:null,sY:null},oLanguage:{fnInfoCallback:null},oBrowser:{bScrollOversize:!1,bScrollbarLeft:!1,bBounding:!1,barWidth:0},ajax:null,aanFeatures:[],aoData:[],aiDisplay:[],aiDisplayMaster:[],aIds:{},aoColumns:[],aoHeader:[],aoFooter:[],oPreviousSearch:{},aoPreSearchCols:[],aaSorting:null,aaSortingFixed:[],asStripeClasses:null,asDestroyStripes:[],sDestroyWidth:0,aoRowCallback:[],aoHeaderCallback:[],aoFooterCallback:[],
+aoDrawCallback:[],aoRowCreatedCallback:[],aoPreDrawCallback:[],aoInitComplete:[],aoStateSaveParams:[],aoStateLoadParams:[],aoStateLoaded:[],sTableId:"",nTable:null,nTHead:null,nTFoot:null,nTBody:null,nTableWrapper:null,bDeferLoading:!1,bInitialised:!1,aoOpenRows:[],sDom:null,searchDelay:null,sPaginationType:"two_button",iStateDuration:0,aoStateSave:[],aoStateLoad:[],oSavedState:null,oLoadedState:null,sAjaxSource:null,sAjaxDataProp:null,bAjaxDataGet:!0,jqXHR:null,json:k,oAjaxData:k,fnServerData:null,
+aoServerParams:[],sServerMethod:null,fnFormatNumber:null,aLengthMenu:null,iDraw:0,bDrawing:!1,iDrawError:-1,_iDisplayLength:10,_iDisplayStart:0,_iRecordsTotal:0,_iRecordsDisplay:0,oClasses:{},bFiltered:!1,bSorted:!1,bSortCellsTop:null,oInit:null,aoDestroyCallback:[],fnRecordsTotal:function(){return"ssp"==y(this)?1*this._iRecordsTotal:this.aiDisplayMaster.length},fnRecordsDisplay:function(){return"ssp"==y(this)?1*this._iRecordsDisplay:this.aiDisplay.length},fnDisplayEnd:function(){var a=this._iDisplayLength,
+b=this._iDisplayStart,c=b+a,d=this.aiDisplay.length,e=this.oFeatures,f=e.bPaginate;return e.bServerSide?!1===f||-1===a?b+d:Math.min(b+a,this._iRecordsDisplay):!f||c>d||-1===a?d:c},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null,aLastSort:[],oPlugins:{},rowIdFn:null,rowId:null};m.ext=x={buttons:{},classes:{},build:"bs4/dt-1.10.16/b-1.4.2/b-colvis-1.4.2/b-html5-1.4.2/cr-1.4.1",errMode:"alert",feature:[],search:[],selector:{cell:[],column:[],row:[]},internal:{},legacy:{ajax:null},pager:{},renderer:{pageButton:{},header:{}},
+order:{},type:{detect:[],search:{},order:{}},_unique:0,fnVersionCheck:m.fnVersionCheck,iApiIndex:0,oJUIClasses:{},sVersion:m.version};h.extend(x,{afnFiltering:x.search,aTypes:x.type.detect,ofnSearch:x.type.search,oSort:x.type.order,afnSortData:x.order,aoFeatures:x.feature,oApi:x.internal,oStdClasses:x.classes,oPagination:x.pager});h.extend(m.ext.classes,{sTable:"dataTable",sNoFooter:"no-footer",sPageButton:"paginate_button",sPageButtonActive:"current",sPageButtonDisabled:"disabled",sStripeOdd:"odd",
+sStripeEven:"even",sRowEmpty:"dataTables_empty",sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sFilterInput:"",sLengthSelect:"",sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",
+sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sHeaderTH:"",sFooterTH:"",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",sJUIHeader:"",sJUIFooter:""});var Kb=m.ext.pager;h.extend(Kb,{simple:function(){return["previous","next"]},full:function(){return["first","previous","next","last"]},numbers:function(a,b){return[ha(a,
+b)]},simple_numbers:function(a,b){return["previous",ha(a,b),"next"]},full_numbers:function(a,b){return["first","previous",ha(a,b),"next","last"]},first_last_numbers:function(a,b){return["first",ha(a,b),"last"]},_numbers:ha,numbers_length:7});h.extend(!0,m.ext.renderer,{pageButton:{_:function(a,b,c,d,e,f){var g=a.oClasses,j=a.oLanguage.oPaginate,i=a.oLanguage.oAria.paginate||{},n,l,m=0,o=function(b,d){var k,s,u,r,v=function(b){Sa(a,b.data.action,true)};k=0;for(s=d.length;k<s;k++){r=d[k];if(h.isArray(r)){u=
+h("<"+(r.DT_el||"div")+"/>").appendTo(b);o(u,r)}else{n=null;l="";switch(r){case "ellipsis":b.append('<span class="ellipsis">&#x2026;</span>');break;case "first":n=j.sFirst;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "previous":n=j.sPrevious;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "next":n=j.sNext;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;case "last":n=j.sLast;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;default:n=r+1;l=e===r?g.sPageButtonActive:""}if(n!==null){u=h("<a>",{"class":g.sPageButton+
+" "+l,"aria-controls":a.sTableId,"aria-label":i[r],"data-dt-idx":m,tabindex:a.iTabIndex,id:c===0&&typeof r==="string"?a.sTableId+"_"+r:null}).html(n).appendTo(b);Va(u,{action:r},v);m++}}}},s;try{s=h(b).find(G.activeElement).data("dt-idx")}catch(u){}o(h(b).empty(),d);s!==k&&h(b).find("[data-dt-idx="+s+"]").focus()}}});h.extend(m.ext.type.detect,[function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c)?"num"+c:null},function(a){if(a&&!(a instanceof Date)&&!Zb.test(a))return null;var b=Date.parse(a);
+return null!==b&&!isNaN(b)||L(a)?"date":null},function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c,!0)?"num-fmt"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c)?"html-num"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c,!0)?"html-num-fmt"+c:null},function(a){return L(a)||"string"===typeof a&&-1!==a.indexOf("<")?"html":null}]);h.extend(m.ext.type.search,{html:function(a){return L(a)?a:"string"===typeof a?a.replace(Mb," ").replace(Aa,""):""},string:function(a){return L(a)?
+a:"string"===typeof a?a.replace(Mb," "):a}});var za=function(a,b,c,d){if(0!==a&&(!a||"-"===a))return-Infinity;b&&(a=Ob(a,b));a.replace&&(c&&(a=a.replace(c,"")),d&&(a=a.replace(d,"")));return 1*a};h.extend(x.type.order,{"date-pre":function(a){return Date.parse(a)||-Infinity},"html-pre":function(a){return L(a)?"":a.replace?a.replace(/<.*?>/g,"").toLowerCase():a+""},"string-pre":function(a){return L(a)?"":"string"===typeof a?a.toLowerCase():!a.toString?"":a.toString()},"string-asc":function(a,b){return a<
+b?-1:a>b?1:0},"string-desc":function(a,b){return a<b?1:a>b?-1:0}});cb("");h.extend(!0,m.ext.renderer,{header:{_:function(a,b,c,d){h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(c.sSortingClass+" "+d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass)}})},jqueryui:function(a,b,c,d){h("<div/>").addClass(d.sSortJUIWrapper).append(b.contents()).append(h("<span/>").addClass(d.sSortIcon+" "+c.sSortingClassJUI)).appendTo(b);
+h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass);b.find("span."+d.sSortIcon).removeClass(d.sSortJUIAsc+" "+d.sSortJUIDesc+" "+d.sSortJUI+" "+d.sSortJUIAscAllowed+" "+d.sSortJUIDescAllowed).addClass(h[e]=="asc"?d.sSortJUIAsc:h[e]=="desc"?d.sSortJUIDesc:c.sSortingClassJUI)}})}}});var Vb=function(a){return"string"===typeof a?a.replace(/</g,"&lt;").replace(/>/g,"&gt;").replace(/"/g,
+"&quot;"):a};m.render={number:function(a,b,c,d,e){return{display:function(f){if("number"!==typeof f&&"string"!==typeof f)return f;var g=0>f?"-":"",h=parseFloat(f);if(isNaN(h))return Vb(f);h=h.toFixed(c);f=Math.abs(h);h=parseInt(f,10);f=c?b+(f-h).toFixed(c).substring(2):"";return g+(d||"")+h.toString().replace(/\B(?=(\d{3})+(?!\d))/g,a)+f+(e||"")}}},text:function(){return{display:Vb}}};h.extend(m.ext.internal,{_fnExternApiFunc:Lb,_fnBuildAjax:sa,_fnAjaxUpdate:kb,_fnAjaxParameters:tb,_fnAjaxUpdateDraw:ub,
+_fnAjaxDataSrc:ta,_fnAddColumn:Da,_fnColumnOptions:ja,_fnAdjustColumnSizing:Y,_fnVisibleToColumnIndex:Z,_fnColumnIndexToVisible:$,_fnVisbleColumns:aa,_fnGetColumns:la,_fnColumnTypes:Fa,_fnApplyColumnDefs:hb,_fnHungarianMap:X,_fnCamelToHungarian:I,_fnLanguageCompat:Ca,_fnBrowserDetect:fb,_fnAddData:M,_fnAddTr:ma,_fnNodeToDataIndex:function(a,b){return b._DT_RowIndex!==k?b._DT_RowIndex:null},_fnNodeToColumnIndex:function(a,b,c){return h.inArray(c,a.aoData[b].anCells)},_fnGetCellData:B,_fnSetCellData:ib,
+_fnSplitObjNotation:Ia,_fnGetObjectDataFn:Q,_fnSetObjectDataFn:R,_fnGetDataMaster:Ja,_fnClearTable:na,_fnDeleteIndex:oa,_fnInvalidate:ca,_fnGetRowElements:Ha,_fnCreateTr:Ga,_fnBuildHead:jb,_fnDrawHead:ea,_fnDraw:N,_fnReDraw:S,_fnAddOptionsHtml:mb,_fnDetectHeader:da,_fnGetUniqueThs:ra,_fnFeatureHtmlFilter:ob,_fnFilterComplete:fa,_fnFilterCustom:xb,_fnFilterColumn:wb,_fnFilter:vb,_fnFilterCreateSearch:Oa,_fnEscapeRegex:Pa,_fnFilterData:yb,_fnFeatureHtmlInfo:rb,_fnUpdateInfo:Bb,_fnInfoMacros:Cb,_fnInitialise:ga,
+_fnInitComplete:ua,_fnLengthChange:Qa,_fnFeatureHtmlLength:nb,_fnFeatureHtmlPaginate:sb,_fnPageChange:Sa,_fnFeatureHtmlProcessing:pb,_fnProcessingDisplay:C,_fnFeatureHtmlTable:qb,_fnScrollDraw:ka,_fnApplyToChildren:H,_fnCalculateColumnWidths:Ea,_fnThrottle:Na,_fnConvertToWidth:Db,_fnGetWidestNode:Eb,_fnGetMaxLenString:Fb,_fnStringToCss:v,_fnSortFlatten:V,_fnSort:lb,_fnSortAria:Hb,_fnSortListener:Ua,_fnSortAttachListener:La,_fnSortingClasses:wa,_fnSortData:Gb,_fnSaveState:xa,_fnLoadState:Ib,_fnSettingsFromNode:ya,
+_fnLog:J,_fnMap:F,_fnBindAction:Va,_fnCallbackReg:z,_fnCallbackFire:r,_fnLengthOverflow:Ra,_fnRenderer:Ma,_fnDataSource:y,_fnRowAttributes:Ka,_fnCalculateEnd:function(){}});h.fn.dataTable=m;m.$=h;h.fn.dataTableSettings=m.settings;h.fn.dataTableExt=m.ext;h.fn.DataTable=function(a){return h(this).dataTable(a).api()};h.each(m,function(a,b){h.fn.DataTable[a]=b});return h.fn.dataTable});
+
+
+/*!
+ DataTables Bootstrap 3 integration
+ ©2011-2015 SpryMedia Ltd - datatables.net/license
+*/
+(function(b){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(a){return b(a,window,document)}):"object"===typeof exports?module.exports=function(a,d){a||(a=window);if(!d||!d.fn.dataTable)d=require("datatables.net")(a,d).$;return b(d,a,a.document)}:b(jQuery,window,document)})(function(b,a,d,m){var f=b.fn.dataTable;b.extend(!0,f.defaults,{dom:"<'row'<'col-sm-12 col-md-6'l><'col-sm-12 col-md-6'f>><'row'<'col-sm-12'tr>><'row'<'col-sm-12 col-md-5'i><'col-sm-12 col-md-7'p>>",
+renderer:"bootstrap"});b.extend(f.ext.classes,{sWrapper:"dataTables_wrapper container-fluid dt-bootstrap4",sFilterInput:"form-control form-control-sm",sLengthSelect:"form-control form-control-sm",sProcessing:"dataTables_processing card",sPageButton:"paginate_button page-item"});f.ext.renderer.pageButton.bootstrap=function(a,h,r,s,j,n){var o=new f.Api(a),t=a.oClasses,k=a.oLanguage.oPaginate,u=a.oLanguage.oAria.paginate||{},e,g,p=0,q=function(d,f){var l,h,i,c,m=function(a){a.preventDefault();!b(a.currentTarget).hasClass("disabled")&&
+o.page()!=a.data.action&&o.page(a.data.action).draw("page")};l=0;for(h=f.length;l<h;l++)if(c=f[l],b.isArray(c))q(d,c);else{g=e="";switch(c){case "ellipsis":e="&#x2026;";g="disabled";break;case "first":e=k.sFirst;g=c+(0<j?"":" disabled");break;case "previous":e=k.sPrevious;g=c+(0<j?"":" disabled");break;case "next":e=k.sNext;g=c+(j<n-1?"":" disabled");break;case "last":e=k.sLast;g=c+(j<n-1?"":" disabled");break;default:e=c+1,g=j===c?"active":""}e&&(i=b("<li>",{"class":t.sPageButton+" "+g,id:0===r&&
+"string"===typeof c?a.sTableId+"_"+c:null}).append(b("<a>",{href:"#","aria-controls":a.sTableId,"aria-label":u[c],"data-dt-idx":p,tabindex:a.iTabIndex,"class":"page-link"}).html(e)).appendTo(d),a.oApi._fnBindAction(i,{action:c},m),p++)}},i;try{i=b(h).find(d.activeElement).data("dt-idx")}catch(v){}q(b(h).empty().html('<ul class="pagination"/>').children("ul"),s);i!==m&&b(h).find("[data-dt-idx="+i+"]").focus()};return f});
+
+
+/*!
+ Buttons for DataTables 1.4.2
+ ©2016-2017 SpryMedia Ltd - datatables.net/license
+*/
+(function(d){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(n){return d(n,window,document)}):"object"===typeof exports?module.exports=function(n,o){n||(n=window);if(!o||!o.fn.dataTable)o=require("datatables.net")(n,o).$;return d(o,n,n.document)}:d(jQuery,window,document)})(function(d,n,o,l){var i=d.fn.dataTable,w=0,x=0,j=i.ext.buttons,m=function(a,b){"undefined"===typeof b&&(b={});!0===b&&(b={});d.isArray(b)&&(b={buttons:b});this.c=d.extend(!0,{},m.defaults,b);
+b.buttons&&(this.c.buttons=b.buttons);this.s={dt:new i.Api(a),buttons:[],listenKeys:"",namespace:"dtb"+w++};this.dom={container:d("<"+this.c.dom.container.tag+"/>").addClass(this.c.dom.container.className)};this._constructor()};d.extend(m.prototype,{action:function(a,b){var c=this._nodeToButton(a);if(b===l)return c.conf.action;c.conf.action=b;return this},active:function(a,b){var c=this._nodeToButton(a),e=this.c.dom.button.active,c=d(c.node);if(b===l)return c.hasClass(e);c.toggleClass(e,b===l?!0:
+b);return this},add:function(a,b){var c=this.s.buttons;if("string"===typeof b){for(var e=b.split("-"),c=this.s,d=0,h=e.length-1;d<h;d++)c=c.buttons[1*e[d]];c=c.buttons;b=1*e[e.length-1]}this._expandButton(c,a,!1,b);this._draw();return this},container:function(){return this.dom.container},disable:function(a){a=this._nodeToButton(a);d(a.node).addClass(this.c.dom.button.disabled);return this},destroy:function(){d("body").off("keyup."+this.s.namespace);var a=this.s.buttons.slice(),b,c;b=0;for(c=a.length;b<
+c;b++)this.remove(a[b].node);this.dom.container.remove();a=this.s.dt.settings()[0];b=0;for(c=a.length;b<c;b++)if(a.inst===this){a.splice(b,1);break}return this},enable:function(a,b){if(!1===b)return this.disable(a);var c=this._nodeToButton(a);d(c.node).removeClass(this.c.dom.button.disabled);return this},name:function(){return this.c.name},node:function(a){a=this._nodeToButton(a);return d(a.node)},processing:function(a,b){var c=this._nodeToButton(a);if(b===l)return d(c.node).hasClass("processing");
+d(c.node).toggleClass("processing",b);return this},remove:function(a){var b=this._nodeToButton(a),c=this._nodeToHost(a),e=this.s.dt;if(b.buttons.length)for(var g=b.buttons.length-1;0<=g;g--)this.remove(b.buttons[g].node);b.conf.destroy&&b.conf.destroy.call(e.button(a),e,d(a),b.conf);this._removeKey(b.conf);d(b.node).remove();a=d.inArray(b,c);c.splice(a,1);return this},text:function(a,b){var c=this._nodeToButton(a),e=this.c.dom.collection.buttonLiner,e=c.inCollection&&e&&e.tag?e.tag:this.c.dom.buttonLiner.tag,
+g=this.s.dt,h=d(c.node),f=function(a){return"function"===typeof a?a(g,h,c.conf):a};if(b===l)return f(c.conf.text);c.conf.text=b;e?h.children(e).html(f(b)):h.html(f(b));return this},_constructor:function(){var a=this,b=this.s.dt,c=b.settings()[0],e=this.c.buttons;c._buttons||(c._buttons=[]);c._buttons.push({inst:this,name:this.c.name});for(var c=0,g=e.length;c<g;c++)this.add(e[c]);b.on("destroy",function(){a.destroy()});d("body").on("keyup."+this.s.namespace,function(b){if(!o.activeElement||o.activeElement===
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+
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+/*!
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n?"MMM"===t?-1!==(i=S.call(this._shortMonthsParse,e))?i:null:-1!==(i=S.call(this._longMonthsParse,e))?i:null:"MMM"===t?-1!==(i=S.call(this._shortMonthsParse,e))||-1!==(i=S.call(this._longMonthsParse,e))?i:null:-1!==(i=S.call(this._longMonthsParse,e))||-1!==(i=S.call(this._shortMonthsParse,e))?i:null}.call(this,e,t,n);for(this._monthsParse||(this._monthsParse=[],this._longMonthsParse=[],this._shortMonthsParse=[]),s=0;s<12;s++){if(i=l([2e3,s]),n&&!this._longMonthsParse[s]&&(this._longMonthsParse[s]=new RegExp("^"+this.months(i,"").replace(".","")+"$","i"),this._shortMonthsParse[s]=new RegExp("^"+this.monthsShort(i,"").replace(".","")+"$","i")),n||this._monthsParse[s]||(i="^"+this.months(i,"")+"|^"+this.monthsShort(i,""),this._monthsParse[s]=new RegExp(i.replace(".",""),"i")),n&&"MMMM"===t&&this._longMonthsParse[s].test(e))return s;if(n&&"MMM"===t&&this._shortMonthsParse[s].test(e))return s;if(!n&&this._monthsParse[s].test(e))return s}},w.monthsRegex=function(e){return this._monthsParseExact?(c(this,"_monthsRegex")||Ee.call(this),e?this._monthsStrictRegex:this._monthsRegex):(c(this,"_monthsRegex")||(this._monthsRegex=Le),this._monthsStrictRegex&&e?this._monthsStrictRegex:this._monthsRegex)},w.monthsShortRegex=function(e){return this._monthsParseExact?(c(this,"_monthsRegex")||Ee.call(this),e?this._monthsShortStrictRegex:this._monthsShortRegex):(c(this,"_monthsShortRegex")||(this._monthsShortRegex=Fe),this._monthsShortStrictRegex&&e?this._monthsShortStrictRegex:this._monthsShortRegex)},w.week=function(e){return qe(e,this._week.dow,this._week.doy).week},w.firstDayOfYear=function(){return this._week.doy},w.firstDayOfWeek=function(){return this._week.dow},w.weekdays=function(e,t){return t=a(this._weekdays)?this._weekdays:this._weekdays[e&&!0!==e&&this._weekdays.isFormat.test(t)?"format":"standalone"],!0===e?Be(t,this._week.dow):e?t[e.day()]:t},w.weekdaysMin=function(e){return!0===e?Be(this._weekdaysMin,this._week.dow):e?this._weekdaysMin[e.day()]:this._weekdaysMin},w.weekdaysShort=function(e){return!0===e?Be(this._weekdaysShort,this._week.dow):e?this._weekdaysShort[e.day()]:this._weekdaysShort},w.weekdaysParse=function(e,t,n){var s,i;if(this._weekdaysParseExact)return function(e,t,n){var s,i,r,e=e.toLocaleLowerCase();if(!this._weekdaysParse)for(this._weekdaysParse=[],this._shortWeekdaysParse=[],this._minWeekdaysParse=[],s=0;s<7;++s)r=l([2e3,1]).day(s),this._minWeekdaysParse[s]=this.weekdaysMin(r,"").toLocaleLowerCase(),this._shortWeekdaysParse[s]=this.weekdaysShort(r,"").toLocaleLowerCase(),this._weekdaysParse[s]=this.weekdays(r,"").toLocaleLowerCase();return n?"dddd"===t?-1!==(i=S.call(this._weekdaysParse,e))?i:null:"ddd"===t?-1!==(i=S.call(this._shortWeekdaysParse,e))?i:null:-1!==(i=S.call(this._minWeekdaysParse,e))?i:null:"dddd"===t?-1!==(i=S.call(this._weekdaysParse,e))||-1!==(i=S.call(this._shortWeekdaysParse,e))||-1!==(i=S.call(this._minWeekdaysParse,e))?i:null:"ddd"===t?-1!==(i=S.call(this._shortWeekdaysParse,e))||-1!==(i=S.call(this._weekdaysParse,e))||-1!==(i=S.call(this._minWeekdaysParse,e))?i:null:-1!==(i=S.call(this._minWeekdaysParse,e))||-1!==(i=S.call(this._weekdaysParse,e))||-1!==(i=S.call(this._shortWeekdaysParse,e))?i:null}.call(this,e,t,n);for(this._weekdaysParse||(this._weekdaysParse=[],this._minWeekdaysParse=[],this._shortWeekdaysParse=[],this._fullWeekdaysParse=[]),s=0;s<7;s++){if(i=l([2e3,1]).day(s),n&&!this._fullWeekdaysParse[s]&&(this._fullWeekdaysParse[s]=new RegExp("^"+this.weekdays(i,"").replace(".","\\.?")+"$","i"),this._shortWeekdaysParse[s]=new RegExp("^"+this.weekdaysShort(i,"").replace(".","\\.?")+"$","i"),this._minWeekdaysParse[s]=new RegExp("^"+this.weekdaysMin(i,"").replace(".","\\.?")+"$","i")),this._weekdaysParse[s]||(i="^"+this.weekdays(i,"")+"|^"+this.weekdaysShort(i,"")+"|^"+this.weekdaysMin(i,""),this._weekdaysParse[s]=new RegExp(i.replace(".",""),"i")),n&&"dddd"===t&&this._fullWeekdaysParse[s].test(e))return s;if(n&&"ddd"===t&&this._shortWeekdaysParse[s].test(e))return s;if(n&&"dd"===t&&this._minWeekdaysParse[s].test(e))return s;if(!n&&this._weekdaysParse[s].test(e))return s}},w.weekdaysRegex=function(e){return this._weekdaysParseExact?(c(this,"_weekdaysRegex")||nt.call(this),e?this._weekdaysStrictRegex:this._weekdaysRegex):(c(this,"_weekdaysRegex")||(this._weekdaysRegex=Ke),this._weekdaysStrictRegex&&e?this._weekdaysStrictRegex:this._weekdaysRegex)},w.weekdaysShortRegex=function(e){return this._weekdaysParseExact?(c(this,"_weekdaysRegex")||nt.call(this),e?this._weekdaysShortStrictRegex:this._weekdaysShortRegex):(c(this,"_weekdaysShortRegex")||(this._weekdaysShortRegex=et),this._weekdaysShortStrictRegex&&e?this._weekdaysShortStrictRegex:this._weekdaysShortRegex)},w.weekdaysMinRegex=function(e){return this._weekdaysParseExact?(c(this,"_weekdaysRegex")||nt.call(this),e?this._weekdaysMinStrictRegex:this._weekdaysMinRegex):(c(this,"_weekdaysMinRegex")||(this._weekdaysMinRegex=tt),this._weekdaysMinStrictRegex&&e?this._weekdaysMinStrictRegex:this._weekdaysMinRegex)},w.isPM=function(e){return"p"===(e+"").toLowerCase().charAt(0)},w.meridiem=function(e,t,n){return 11<e?n?"pm":"PM":n?"am":"AM"},ct("en",{eras:[{since:"0001-01-01",until:1/0,offset:1,name:"Anno Domini",narrow:"AD",abbr:"AD"},{since:"0000-12-31",until:-1/0,offset:1,name:"Before Christ",narrow:"BC",abbr:"BC"}],dayOfMonthOrdinalParse:/\d{1,2}(th|st|nd|rd)/,ordinal:function(e){var t=e%10;return e+(1===g(e%100/10)?"th":1==t?"st":2==t?"nd":3==t?"rd":"th")}}),f.lang=e("moment.lang is deprecated. Use moment.locale instead.",ct),f.langData=e("moment.langData is deprecated. 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+//# sourceMappingURL=moment.min.js.map
+
+
+
+/**
+* plotly.js v1.34.0
+* Copyright 2012-2018, Plotly, Inc.
+* All rights reserved.
+* Licensed under the MIT license
+*/
+!function(t){if("object"==typeof exports&&"undefined"!=typeof module)module.exports=t();else if("function"==typeof define&&define.amd)define([],t);else{("undefined"!=typeof window?window:"undefined"!=typeof global?global:"undefined"!=typeof self?self:this).Plotly=t()}}(function(){return function t(e,r,n){function i(o,s){if(!r[o]){if(!e[o]){var l="function"==typeof require&&require;if(!s&&l)return l(o,!0);if(a)return a(o,!0);var c=new Error("Cannot find module '"+o+"'");throw c.code="MODULE_NOT_FOUND",c}var u=r[o]={exports:{}};e[o][0].call(u.exports,function(t){var r=e[o][1][t];return i(r||t)},u,u.exports,t,e,r,n)}return r[o].exports}for(var a="function"==typeof require&&require,o=0;o<n.length;o++)i(n[o]);return i}({1:[function(t,e,r){"use strict";var n=t("../src/lib"),i={"X,X div":"font-family:'Open Sans', verdana, arial, sans-serif;margin:0;padding:0;","X input,X button":"font-family:'Open Sans', verdana, arial, sans-serif;","X input:focus,X button:focus":"outline:none;","X 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xt=(c+(n=n+Math.imul(f,$)|0)|0)+((8191&(i=(i=i+Math.imul(f,tt)|0)+Math.imul(h,$)|0))<<13)|0;c=((a=a+Math.imul(h,tt)|0)+(i>>>13)|0)+(xt>>>26)|0,xt&=67108863,n=Math.imul(T,U),i=(i=Math.imul(T,V))+Math.imul(E,U)|0,a=Math.imul(E,V),n=n+Math.imul(M,H)|0,i=(i=i+Math.imul(M,G)|0)+Math.imul(k,H)|0,a=a+Math.imul(k,G)|0,n=n+Math.imul(x,W)|0,i=(i=i+Math.imul(x,X)|0)+Math.imul(_,W)|0,a=a+Math.imul(_,X)|0,n=n+Math.imul(g,J)|0,i=(i=i+Math.imul(g,K)|0)+Math.imul(y,J)|0,a=a+Math.imul(y,K)|0,n=n+Math.imul(p,$)|0,i=(i=i+Math.imul(p,tt)|0)+Math.imul(m,$)|0,a=a+Math.imul(m,tt)|0;var 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wt=(c+(n=n+Math.imul(f,at)|0)|0)+((8191&(i=(i=i+Math.imul(f,ot)|0)+Math.imul(h,at)|0))<<13)|0;c=((a=a+Math.imul(h,ot)|0)+(i>>>13)|0)+(wt>>>26)|0,wt&=67108863,n=Math.imul(z,U),i=(i=Math.imul(z,V))+Math.imul(O,U)|0,a=Math.imul(O,V),n=n+Math.imul(L,H)|0,i=(i=i+Math.imul(L,G)|0)+Math.imul(C,H)|0,a=a+Math.imul(C,G)|0,n=n+Math.imul(T,W)|0,i=(i=i+Math.imul(T,X)|0)+Math.imul(E,W)|0,a=a+Math.imul(E,X)|0,n=n+Math.imul(M,J)|0,i=(i=i+Math.imul(M,K)|0)+Math.imul(k,J)|0,a=a+Math.imul(k,K)|0,n=n+Math.imul(x,$)|0,i=(i=i+Math.imul(x,tt)|0)+Math.imul(_,$)|0,a=a+Math.imul(_,tt)|0,n=n+Math.imul(g,rt)|0,i=(i=i+Math.imul(g,nt)|0)+Math.imul(y,rt)|0,a=a+Math.imul(y,nt)|0,n=n+Math.imul(p,at)|0,i=(i=i+Math.imul(p,ot)|0)+Math.imul(m,at)|0,a=a+Math.imul(m,ot)|0;var 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kt=(c+(n=n+Math.imul(f,ft)|0)|0)+((8191&(i=(i=i+Math.imul(f,ht)|0)+Math.imul(h,ft)|0))<<13)|0;c=((a=a+Math.imul(h,ht)|0)+(i>>>13)|0)+(kt>>>26)|0,kt&=67108863,n=Math.imul(F,U),i=(i=Math.imul(F,V))+Math.imul(j,U)|0,a=Math.imul(j,V),n=n+Math.imul(I,H)|0,i=(i=i+Math.imul(I,G)|0)+Math.imul(R,H)|0,a=a+Math.imul(R,G)|0,n=n+Math.imul(z,W)|0,i=(i=i+Math.imul(z,X)|0)+Math.imul(O,W)|0,a=a+Math.imul(O,X)|0,n=n+Math.imul(L,J)|0,i=(i=i+Math.imul(L,K)|0)+Math.imul(C,J)|0,a=a+Math.imul(C,K)|0,n=n+Math.imul(T,$)|0,i=(i=i+Math.imul(T,tt)|0)+Math.imul(E,$)|0,a=a+Math.imul(E,tt)|0,n=n+Math.imul(M,rt)|0,i=(i=i+Math.imul(M,nt)|0)+Math.imul(k,rt)|0,a=a+Math.imul(k,nt)|0,n=n+Math.imul(x,at)|0,i=(i=i+Math.imul(x,ot)|0)+Math.imul(_,at)|0,a=a+Math.imul(_,ot)|0,n=n+Math.imul(g,lt)|0,i=(i=i+Math.imul(g,ct)|0)+Math.imul(y,lt)|0,a=a+Math.imul(y,ct)|0,n=n+Math.imul(p,ft)|0,i=(i=i+Math.imul(p,ht)|0)+Math.imul(m,ft)|0,a=a+Math.imul(m,ht)|0;var At=(c+(n=n+Math.imul(f,pt)|0)|0)+((8191&(i=(i=i+Math.imul(f,mt)|0)+Math.imul(h,pt)|0))<<13)|0;c=((a=a+Math.imul(h,mt)|0)+(i>>>13)|0)+(At>>>26)|0,At&=67108863,n=Math.imul(F,H),i=(i=Math.imul(F,G))+Math.imul(j,H)|0,a=Math.imul(j,G),n=n+Math.imul(I,W)|0,i=(i=i+Math.imul(I,X)|0)+Math.imul(R,W)|0,a=a+Math.imul(R,X)|0,n=n+Math.imul(z,J)|0,i=(i=i+Math.imul(z,K)|0)+Math.imul(O,J)|0,a=a+Math.imul(O,K)|0,n=n+Math.imul(L,$)|0,i=(i=i+Math.imul(L,tt)|0)+Math.imul(C,$)|0,a=a+Math.imul(C,tt)|0,n=n+Math.imul(T,rt)|0,i=(i=i+Math.imul(T,nt)|0)+Math.imul(E,rt)|0,a=a+Math.imul(E,nt)|0,n=n+Math.imul(M,at)|0,i=(i=i+Math.imul(M,ot)|0)+Math.imul(k,at)|0,a=a+Math.imul(k,ot)|0,n=n+Math.imul(x,lt)|0,i=(i=i+Math.imul(x,ct)|0)+Math.imul(_,lt)|0,a=a+Math.imul(_,ct)|0,n=n+Math.imul(g,ft)|0,i=(i=i+Math.imul(g,ht)|0)+Math.imul(y,ft)|0,a=a+Math.imul(y,ht)|0;var Tt=(c+(n=n+Math.imul(p,pt)|0)|0)+((8191&(i=(i=i+Math.imul(p,mt)|0)+Math.imul(m,pt)|0))<<13)|0;c=((a=a+Math.imul(m,mt)|0)+(i>>>13)|0)+(Tt>>>26)|0,Tt&=67108863,n=Math.imul(F,W),i=(i=Math.imul(F,X))+Math.imul(j,W)|0,a=Math.imul(j,X),n=n+Math.imul(I,J)|0,i=(i=i+Math.imul(I,K)|0)+Math.imul(R,J)|0,a=a+Math.imul(R,K)|0,n=n+Math.imul(z,$)|0,i=(i=i+Math.imul(z,tt)|0)+Math.imul(O,$)|0,a=a+Math.imul(O,tt)|0,n=n+Math.imul(L,rt)|0,i=(i=i+Math.imul(L,nt)|0)+Math.imul(C,rt)|0,a=a+Math.imul(C,nt)|0,n=n+Math.imul(T,at)|0,i=(i=i+Math.imul(T,ot)|0)+Math.imul(E,at)|0,a=a+Math.imul(E,ot)|0,n=n+Math.imul(M,lt)|0,i=(i=i+Math.imul(M,ct)|0)+Math.imul(k,lt)|0,a=a+Math.imul(k,ct)|0,n=n+Math.imul(x,ft)|0,i=(i=i+Math.imul(x,ht)|0)+Math.imul(_,ft)|0,a=a+Math.imul(_,ht)|0;var Et=(c+(n=n+Math.imul(g,pt)|0)|0)+((8191&(i=(i=i+Math.imul(g,mt)|0)+Math.imul(y,pt)|0))<<13)|0;c=((a=a+Math.imul(y,mt)|0)+(i>>>13)|0)+(Et>>>26)|0,Et&=67108863,n=Math.imul(F,J),i=(i=Math.imul(F,K))+Math.imul(j,J)|0,a=Math.imul(j,K),n=n+Math.imul(I,$)|0,i=(i=i+Math.imul(I,tt)|0)+Math.imul(R,$)|0,a=a+Math.imul(R,tt)|0,n=n+Math.imul(z,rt)|0,i=(i=i+Math.imul(z,nt)|0)+Math.imul(O,rt)|0,a=a+Math.imul(O,nt)|0,n=n+Math.imul(L,at)|0,i=(i=i+Math.imul(L,ot)|0)+Math.imul(C,at)|0,a=a+Math.imul(C,ot)|0,n=n+Math.imul(T,lt)|0,i=(i=i+Math.imul(T,ct)|0)+Math.imul(E,lt)|0,a=a+Math.imul(E,ct)|0,n=n+Math.imul(M,ft)|0,i=(i=i+Math.imul(M,ht)|0)+Math.imul(k,ft)|0,a=a+Math.imul(k,ht)|0;var St=(c+(n=n+Math.imul(x,pt)|0)|0)+((8191&(i=(i=i+Math.imul(x,mt)|0)+Math.imul(_,pt)|0))<<13)|0;c=((a=a+Math.imul(_,mt)|0)+(i>>>13)|0)+(St>>>26)|0,St&=67108863,n=Math.imul(F,$),i=(i=Math.imul(F,tt))+Math.imul(j,$)|0,a=Math.imul(j,tt),n=n+Math.imul(I,rt)|0,i=(i=i+Math.imul(I,nt)|0)+Math.imul(R,rt)|0,a=a+Math.imul(R,nt)|0,n=n+Math.imul(z,at)|0,i=(i=i+Math.imul(z,ot)|0)+Math.imul(O,at)|0,a=a+Math.imul(O,ot)|0,n=n+Math.imul(L,lt)|0,i=(i=i+Math.imul(L,ct)|0)+Math.imul(C,lt)|0,a=a+Math.imul(C,ct)|0,n=n+Math.imul(T,ft)|0,i=(i=i+Math.imul(T,ht)|0)+Math.imul(E,ft)|0,a=a+Math.imul(E,ht)|0;var Lt=(c+(n=n+Math.imul(M,pt)|0)|0)+((8191&(i=(i=i+Math.imul(M,mt)|0)+Math.imul(k,pt)|0))<<13)|0;c=((a=a+Math.imul(k,mt)|0)+(i>>>13)|0)+(Lt>>>26)|0,Lt&=67108863,n=Math.imul(F,rt),i=(i=Math.imul(F,nt))+Math.imul(j,rt)|0,a=Math.imul(j,nt),n=n+Math.imul(I,at)|0,i=(i=i+Math.imul(I,ot)|0)+Math.imul(R,at)|0,a=a+Math.imul(R,ot)|0,n=n+Math.imul(z,lt)|0,i=(i=i+Math.imul(z,ct)|0)+Math.imul(O,lt)|0,a=a+Math.imul(O,ct)|0,n=n+Math.imul(L,ft)|0,i=(i=i+Math.imul(L,ht)|0)+Math.imul(C,ft)|0,a=a+Math.imul(C,ht)|0;var Ct=(c+(n=n+Math.imul(T,pt)|0)|0)+((8191&(i=(i=i+Math.imul(T,mt)|0)+Math.imul(E,pt)|0))<<13)|0;c=((a=a+Math.imul(E,mt)|0)+(i>>>13)|0)+(Ct>>>26)|0,Ct&=67108863,n=Math.imul(F,at),i=(i=Math.imul(F,ot))+Math.imul(j,at)|0,a=Math.imul(j,ot),n=n+Math.imul(I,lt)|0,i=(i=i+Math.imul(I,ct)|0)+Math.imul(R,lt)|0,a=a+Math.imul(R,ct)|0,n=n+Math.imul(z,ft)|0,i=(i=i+Math.imul(z,ht)|0)+Math.imul(O,ft)|0,a=a+Math.imul(O,ht)|0;var Pt=(c+(n=n+Math.imul(L,pt)|0)|0)+((8191&(i=(i=i+Math.imul(L,mt)|0)+Math.imul(C,pt)|0))<<13)|0;c=((a=a+Math.imul(C,mt)|0)+(i>>>13)|0)+(Pt>>>26)|0,Pt&=67108863,n=Math.imul(F,lt),i=(i=Math.imul(F,ct))+Math.imul(j,lt)|0,a=Math.imul(j,ct),n=n+Math.imul(I,ft)|0,i=(i=i+Math.imul(I,ht)|0)+Math.imul(R,ft)|0,a=a+Math.imul(R,ht)|0;var zt=(c+(n=n+Math.imul(z,pt)|0)|0)+((8191&(i=(i=i+Math.imul(z,mt)|0)+Math.imul(O,pt)|0))<<13)|0;c=((a=a+Math.imul(O,mt)|0)+(i>>>13)|0)+(zt>>>26)|0,zt&=67108863,n=Math.imul(F,ft),i=(i=Math.imul(F,ht))+Math.imul(j,ft)|0,a=Math.imul(j,ht);var Ot=(c+(n=n+Math.imul(I,pt)|0)|0)+((8191&(i=(i=i+Math.imul(I,mt)|0)+Math.imul(R,pt)|0))<<13)|0;c=((a=a+Math.imul(R,mt)|0)+(i>>>13)|0)+(Ot>>>26)|0,Ot&=67108863;var Dt=(c+(n=Math.imul(F,pt))|0)+((8191&(i=(i=Math.imul(F,mt))+Math.imul(j,pt)|0))<<13)|0;return c=((a=Math.imul(j,mt))+(i>>>13)|0)+(Dt>>>26)|0,Dt&=67108863,l[0]=vt,l[1]=gt,l[2]=yt,l[3]=bt,l[4]=xt,l[5]=_t,l[6]=wt,l[7]=Mt,l[8]=kt,l[9]=At,l[10]=Tt,l[11]=Et,l[12]=St,l[13]=Lt,l[14]=Ct,l[15]=Pt,l[16]=zt,l[17]=Ot,l[18]=Dt,0!==c&&(l[19]=c,r.length++),r};function p(t,e,r){return(new m).mulp(t,e,r)}function m(t,e){this.x=t,this.y=e}Math.imul||(d=h),a.prototype.mulTo=function(t,e){var r=this.length+t.length;return 10===this.length&&10===t.length?d(this,t,e):r<63?h(this,t,e):r<1024?function(t,e,r){r.negative=e.negative^t.negative,r.length=t.length+e.length;for(var n=0,i=0,a=0;a<r.length-1;a++){var o=i;i=0;for(var s=67108863&n,l=Math.min(a,e.length-1),c=Math.max(0,a-t.length+1);c<=l;c++){var u=a-c,f=(0|t.words[u])*(0|e.words[c]),h=67108863&f;s=67108863&(h=h+s|0),i+=(o=(o=o+(f/67108864|0)|0)+(h>>>26)|0)>>>26,o&=67108863}r.words[a]=s,n=o,o=i}return 0!==n?r.words[a]=n:r.length--,r.strip()}(this,t,e):p(this,t,e)},m.prototype.makeRBT=function(t){for(var e=new Array(t),r=a.prototype._countBits(t)-1,n=0;n<t;n++)e[n]=this.revBin(n,r,t);return e},m.prototype.revBin=function(t,e,r){if(0===t||t===r-1)return t;for(var n=0,i=0;i<e;i++)n|=(1&t)<<e-i-1,t>>=1;return n},m.prototype.permute=function(t,e,r,n,i,a){for(var o=0;o<a;o++)n[o]=e[t[o]],i[o]=r[t[o]]},m.prototype.transform=function(t,e,r,n,i,a){this.permute(a,t,e,r,n,i);for(var o=1;o<i;o<<=1)for(var s=o<<1,l=Math.cos(2*Math.PI/s),c=Math.sin(2*Math.PI/s),u=0;u<i;u+=s)for(var f=l,h=c,d=0;d<o;d++){var p=r[u+d],m=n[u+d],v=r[u+d+o],g=n[u+d+o],y=f*v-h*g;g=f*g+h*v,v=y,r[u+d]=p+v,n[u+d]=m+g,r[u+d+o]=p-v,n[u+d+o]=m-g,d!==s&&(y=l*f-c*h,h=l*h+c*f,f=y)}},m.prototype.guessLen13b=function(t,e){var r=1|Math.max(e,t),n=1&r,i=0;for(r=r/2|0;r;r>>>=1)i++;return 1<<i+1+n},m.prototype.conjugate=function(t,e,r){if(!(r<=1))for(var n=0;n<r/2;n++){var i=t[n];t[n]=t[r-n-1],t[r-n-1]=i,i=e[n],e[n]=-e[r-n-1],e[r-n-1]=-i}},m.prototype.normalize13b=function(t,e){for(var r=0,n=0;n<e/2;n++){var i=8192*Math.round(t[2*n+1]/e)+Math.round(t[2*n]/e)+r;t[n]=67108863&i,r=i<67108864?0:i/67108864|0}return t},m.prototype.convert13b=function(t,e,r,i){for(var a=0,o=0;o<e;o++)a+=0|t[o],r[2*o]=8191&a,a>>>=13,r[2*o+1]=8191&a,a>>>=13;for(o=2*e;o<i;++o)r[o]=0;n(0===a),n(0==(-8192&a))},m.prototype.stub=function(t){for(var e=new Array(t),r=0;r<t;r++)e[r]=0;return e},m.prototype.mulp=function(t,e,r){var n=2*this.guessLen13b(t.length,e.length),i=this.makeRBT(n),a=this.stub(n),o=new Array(n),s=new Array(n),l=new Array(n),c=new Array(n),u=new Array(n),f=new Array(n),h=r.words;h.length=n,this.convert13b(t.words,t.length,o,n),this.convert13b(e.words,e.length,c,n),this.transform(o,a,s,l,n,i),this.transform(c,a,u,f,n,i);for(var d=0;d<n;d++){var p=s[d]*u[d]-l[d]*f[d];l[d]=s[d]*f[d]+l[d]*u[d],s[d]=p}return this.conjugate(s,l,n),this.transform(s,l,h,a,n,i),this.conjugate(h,a,n),this.normalize13b(h,n),r.negative=t.negative^e.negative,r.length=t.length+e.length,r.strip()},a.prototype.mul=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),this.mulTo(t,e)},a.prototype.mulf=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),p(this,t,e)},a.prototype.imul=function(t){return this.clone().mulTo(t,this)},a.prototype.imuln=function(t){n("number"==typeof t),n(t<67108864);for(var e=0,r=0;r<this.length;r++){var i=(0|this.words[r])*t,a=(67108863&i)+(67108863&e);e>>=26,e+=i/67108864|0,e+=a>>>26,this.words[r]=67108863&a}return 0!==e&&(this.words[r]=e,this.length++),this},a.prototype.muln=function(t){return this.clone().imuln(t)},a.prototype.sqr=function(){return this.mul(this)},a.prototype.isqr=function(){return this.imul(this.clone())},a.prototype.pow=function(t){var e=function(t){for(var e=new Array(t.bitLength()),r=0;r<e.length;r++){var n=r/26|0,i=r%26;e[r]=(t.words[n]&1<<i)>>>i}return e}(t);if(0===e.length)return new a(1);for(var r=this,n=0;n<e.length&&0===e[n];n++,r=r.sqr());if(++n<e.length)for(var i=r.sqr();n<e.length;n++,i=i.sqr())0!==e[n]&&(r=r.mul(i));return r},a.prototype.iushln=function(t){n("number"==typeof t&&t>=0);var e,r=t%26,i=(t-r)/26,a=67108863>>>26-r<<26-r;if(0!==r){var o=0;for(e=0;e<this.length;e++){var s=this.words[e]&a,l=(0|this.words[e])-s<<r;this.words[e]=l|o,o=s>>>26-r}o&&(this.words[e]=o,this.length++)}if(0!==i){for(e=this.length-1;e>=0;e--)this.words[e+i]=this.words[e];for(e=0;e<i;e++)this.words[e]=0;this.length+=i}return this.strip()},a.prototype.ishln=function(t){return n(0===this.negative),this.iushln(t)},a.prototype.iushrn=function(t,e,r){var i;n("number"==typeof t&&t>=0),i=e?(e-e%26)/26:0;var a=t%26,o=Math.min((t-a)/26,this.length),s=67108863^67108863>>>a<<a,l=r;if(i-=o,i=Math.max(0,i),l){for(var c=0;c<o;c++)l.words[c]=this.words[c];l.length=o}if(0===o);else if(this.length>o)for(this.length-=o,c=0;c<this.length;c++)this.words[c]=this.words[c+o];else this.words[0]=0,this.length=1;var u=0;for(c=this.length-1;c>=0&&(0!==u||c>=i);c--){var f=0|this.words[c];this.words[c]=u<<26-a|f>>>a,u=f&s}return l&&0!==u&&(l.words[l.length++]=u),0===this.length&&(this.words[0]=0,this.length=1),this.strip()},a.prototype.ishrn=function(t,e,r){return n(0===this.negative),this.iushrn(t,e,r)},a.prototype.shln=function(t){return this.clone().ishln(t)},a.prototype.ushln=function(t){return this.clone().iushln(t)},a.prototype.shrn=function(t){return this.clone().ishrn(t)},a.prototype.ushrn=function(t){return this.clone().iushrn(t)},a.prototype.testn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26,i=1<<e;return!(this.length<=r)&&!!(this.words[r]&i)},a.prototype.imaskn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26;if(n(0===this.negative,"imaskn works only with positive numbers"),this.length<=r)return this;if(0!==e&&r++,this.length=Math.min(r,this.length),0!==e){var i=67108863^67108863>>>e<<e;this.words[this.length-1]&=i}return this.strip()},a.prototype.maskn=function(t){return this.clone().imaskn(t)},a.prototype.iaddn=function(t){return n("number"==typeof t),n(t<67108864),t<0?this.isubn(-t):0!==this.negative?1===this.length&&(0|this.words[0])<t?(this.words[0]=t-(0|this.words[0]),this.negative=0,this):(this.negative=0,this.isubn(t),this.negative=1,this):this._iaddn(t)},a.prototype._iaddn=function(t){this.words[0]+=t;for(var e=0;e<this.length&&this.words[e]>=67108864;e++)this.words[e]-=67108864,e===this.length-1?this.words[e+1]=1:this.words[e+1]++;return this.length=Math.max(this.length,e+1),this},a.prototype.isubn=function(t){if(n("number"==typeof t),n(t<67108864),t<0)return this.iaddn(-t);if(0!==this.negative)return this.negative=0,this.iaddn(t),this.negative=1,this;if(this.words[0]-=t,1===this.length&&this.words[0]<0)this.words[0]=-this.words[0],this.negative=1;else for(var e=0;e<this.length&&this.words[e]<0;e++)this.words[e]+=67108864,this.words[e+1]-=1;return this.strip()},a.prototype.addn=function(t){return this.clone().iaddn(t)},a.prototype.subn=function(t){return this.clone().isubn(t)},a.prototype.iabs=function(){return this.negative=0,this},a.prototype.abs=function(){return this.clone().iabs()},a.prototype._ishlnsubmul=function(t,e,r){var i,a,o=t.length+r;this._expand(o);var s=0;for(i=0;i<t.length;i++){a=(0|this.words[i+r])+s;var l=(0|t.words[i])*e;s=((a-=67108863&l)>>26)-(l/67108864|0),this.words[i+r]=67108863&a}for(;i<this.length-r;i++)s=(a=(0|this.words[i+r])+s)>>26,this.words[i+r]=67108863&a;if(0===s)return this.strip();for(n(-1===s),s=0,i=0;i<this.length;i++)s=(a=-(0|this.words[i])+s)>>26,this.words[i]=67108863&a;return this.negative=1,this.strip()},a.prototype._wordDiv=function(t,e){var r=(this.length,t.length),n=this.clone(),i=t,o=0|i.words[i.length-1];0!==(r=26-this._countBits(o))&&(i=i.ushln(r),n.iushln(r),o=0|i.words[i.length-1]);var s,l=n.length-i.length;if("mod"!==e){(s=new a(null)).length=l+1,s.words=new Array(s.length);for(var c=0;c<s.length;c++)s.words[c]=0}var u=n.clone()._ishlnsubmul(i,1,l);0===u.negative&&(n=u,s&&(s.words[l]=1));for(var f=l-1;f>=0;f--){var h=67108864*(0|n.words[i.length+f])+(0|n.words[i.length+f-1]);for(h=Math.min(h/o|0,67108863),n._ishlnsubmul(i,h,f);0!==n.negative;)h--,n.negative=0,n._ishlnsubmul(i,1,f),n.isZero()||(n.negative^=1);s&&(s.words[f]=h)}return s&&s.strip(),n.strip(),"div"!==e&&0!==r&&n.iushrn(r),{div:s||null,mod:n}},a.prototype.divmod=function(t,e,r){return n(!t.isZero()),this.isZero()?{div:new a(0),mod:new a(0)}:0!==this.negative&&0===t.negative?(s=this.neg().divmod(t,e),"mod"!==e&&(i=s.div.neg()),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.iadd(t)),{div:i,mod:o}):0===this.negative&&0!==t.negative?(s=this.divmod(t.neg(),e),"mod"!==e&&(i=s.div.neg()),{div:i,mod:s.mod}):0!=(this.negative&t.negative)?(s=this.neg().divmod(t.neg(),e),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.isub(t)),{div:s.div,mod:o}):t.length>this.length||this.cmp(t)<0?{div:new a(0),mod:this}:1===t.length?"div"===e?{div:this.divn(t.words[0]),mod:null}:"mod"===e?{div:null,mod:new a(this.modn(t.words[0]))}:{div:this.divn(t.words[0]),mod:new a(this.modn(t.words[0]))}:this._wordDiv(t,e);var i,o,s},a.prototype.div=function(t){return this.divmod(t,"div",!1).div},a.prototype.mod=function(t){return this.divmod(t,"mod",!1).mod},a.prototype.umod=function(t){return this.divmod(t,"mod",!0).mod},a.prototype.divRound=function(t){var e=this.divmod(t);if(e.mod.isZero())return e.div;var r=0!==e.div.negative?e.mod.isub(t):e.mod,n=t.ushrn(1),i=t.andln(1),a=r.cmp(n);return a<0||1===i&&0===a?e.div:0!==e.div.negative?e.div.isubn(1):e.div.iaddn(1)},a.prototype.modn=function(t){n(t<=67108863);for(var e=(1<<26)%t,r=0,i=this.length-1;i>=0;i--)r=(e*r+(0|this.words[i]))%t;return r},a.prototype.idivn=function(t){n(t<=67108863);for(var e=0,r=this.length-1;r>=0;r--){var i=(0|this.words[r])+67108864*e;this.words[r]=i/t|0,e=i%t}return this.strip()},a.prototype.divn=function(t){return this.clone().idivn(t)},a.prototype.egcd=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i=new a(1),o=new a(0),s=new a(0),l=new a(1),c=0;e.isEven()&&r.isEven();)e.iushrn(1),r.iushrn(1),++c;for(var u=r.clone(),f=e.clone();!e.isZero();){for(var h=0,d=1;0==(e.words[0]&d)&&h<26;++h,d<<=1);if(h>0)for(e.iushrn(h);h-- >0;)(i.isOdd()||o.isOdd())&&(i.iadd(u),o.isub(f)),i.iushrn(1),o.iushrn(1);for(var p=0,m=1;0==(r.words[0]&m)&&p<26;++p,m<<=1);if(p>0)for(r.iushrn(p);p-- >0;)(s.isOdd()||l.isOdd())&&(s.iadd(u),l.isub(f)),s.iushrn(1),l.iushrn(1);e.cmp(r)>=0?(e.isub(r),i.isub(s),o.isub(l)):(r.isub(e),s.isub(i),l.isub(o))}return{a:s,b:l,gcd:r.iushln(c)}},a.prototype._invmp=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i,o=new a(1),s=new a(0),l=r.clone();e.cmpn(1)>0&&r.cmpn(1)>0;){for(var c=0,u=1;0==(e.words[0]&u)&&c<26;++c,u<<=1);if(c>0)for(e.iushrn(c);c-- >0;)o.isOdd()&&o.iadd(l),o.iushrn(1);for(var f=0,h=1;0==(r.words[0]&h)&&f<26;++f,h<<=1);if(f>0)for(r.iushrn(f);f-- >0;)s.isOdd()&&s.iadd(l),s.iushrn(1);e.cmp(r)>=0?(e.isub(r),o.isub(s)):(r.isub(e),s.isub(o))}return(i=0===e.cmpn(1)?o:s).cmpn(0)<0&&i.iadd(t),i},a.prototype.gcd=function(t){if(this.isZero())return t.abs();if(t.isZero())return this.abs();var e=this.clone(),r=t.clone();e.negative=0,r.negative=0;for(var n=0;e.isEven()&&r.isEven();n++)e.iushrn(1),r.iushrn(1);for(;;){for(;e.isEven();)e.iushrn(1);for(;r.isEven();)r.iushrn(1);var i=e.cmp(r);if(i<0){var a=e;e=r,r=a}else if(0===i||0===r.cmpn(1))break;e.isub(r)}return r.iushln(n)},a.prototype.invm=function(t){return this.egcd(t).a.umod(t)},a.prototype.isEven=function(){return 0==(1&this.words[0])},a.prototype.isOdd=function(){return 1==(1&this.words[0])},a.prototype.andln=function(t){return this.words[0]&t},a.prototype.bincn=function(t){n("number"==typeof t);var e=t%26,r=(t-e)/26,i=1<<e;if(this.length<=r)return this._expand(r+1),this.words[r]|=i,this;for(var a=i,o=r;0!==a&&o<this.length;o++){var s=0|this.words[o];a=(s+=a)>>>26,s&=67108863,this.words[o]=s}return 0!==a&&(this.words[o]=a,this.length++),this},a.prototype.isZero=function(){return 1===this.length&&0===this.words[0]},a.prototype.cmpn=function(t){var e,r=t<0;if(0!==this.negative&&!r)return-1;if(0===this.negative&&r)return 1;if(this.strip(),this.length>1)e=1;else{r&&(t=-t),n(t<=67108863,"Number is too big");var i=0|this.words[0];e=i===t?0:i<t?-1:1}return 0!==this.negative?0|-e:e},a.prototype.cmp=function(t){if(0!==this.negative&&0===t.negative)return-1;if(0===this.negative&&0!==t.negative)return 1;var e=this.ucmp(t);return 0!==this.negative?0|-e:e},a.prototype.ucmp=function(t){if(this.length>t.length)return 1;if(this.length<t.length)return-1;for(var e=0,r=this.length-1;r>=0;r--){var n=0|this.words[r],i=0|t.words[r];if(n!==i){n<i?e=-1:n>i&&(e=1);break}}return e},a.prototype.gtn=function(t){return 1===this.cmpn(t)},a.prototype.gt=function(t){return 1===this.cmp(t)},a.prototype.gten=function(t){return this.cmpn(t)>=0},a.prototype.gte=function(t){return this.cmp(t)>=0},a.prototype.ltn=function(t){return-1===this.cmpn(t)},a.prototype.lt=function(t){return-1===this.cmp(t)},a.prototype.lten=function(t){return this.cmpn(t)<=0},a.prototype.lte=function(t){return this.cmp(t)<=0},a.prototype.eqn=function(t){return 0===this.cmpn(t)},a.prototype.eq=function(t){return 0===this.cmp(t)},a.red=function(t){return new w(t)},a.prototype.toRed=function(t){return n(!this.red,"Already a number in reduction context"),n(0===this.negative,"red works only with positives"),t.convertTo(this)._forceRed(t)},a.prototype.fromRed=function(){return n(this.red,"fromRed works only with numbers in reduction context"),this.red.convertFrom(this)},a.prototype._forceRed=function(t){return this.red=t,this},a.prototype.forceRed=function(t){return n(!this.red,"Already a number in reduction context"),this._forceRed(t)},a.prototype.redAdd=function(t){return n(this.red,"redAdd works only with red numbers"),this.red.add(this,t)},a.prototype.redIAdd=function(t){return n(this.red,"redIAdd works only with red numbers"),this.red.iadd(this,t)},a.prototype.redSub=function(t){return n(this.red,"redSub works only with red numbers"),this.red.sub(this,t)},a.prototype.redISub=function(t){return n(this.red,"redISub works only with red numbers"),this.red.isub(this,t)},a.prototype.redShl=function(t){return n(this.red,"redShl works only with red numbers"),this.red.shl(this,t)},a.prototype.redMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.mul(this,t)},a.prototype.redIMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.imul(this,t)},a.prototype.redSqr=function(){return n(this.red,"redSqr works only with red numbers"),this.red._verify1(this),this.red.sqr(this)},a.prototype.redISqr=function(){return n(this.red,"redISqr works only with red numbers"),this.red._verify1(this),this.red.isqr(this)},a.prototype.redSqrt=function(){return n(this.red,"redSqrt works only with red numbers"),this.red._verify1(this),this.red.sqrt(this)},a.prototype.redInvm=function(){return n(this.red,"redInvm works only with red numbers"),this.red._verify1(this),this.red.invm(this)},a.prototype.redNeg=function(){return n(this.red,"redNeg works only with red numbers"),this.red._verify1(this),this.red.neg(this)},a.prototype.redPow=function(t){return n(this.red&&!t.red,"redPow(normalNum)"),this.red._verify1(this),this.red.pow(this,t)};var v={k256:null,p224:null,p192:null,p25519:null};function g(t,e){this.name=t,this.p=new a(e,16),this.n=this.p.bitLength(),this.k=new a(1).iushln(this.n).isub(this.p),this.tmp=this._tmp()}function y(){g.call(this,"k256","ffffffff ffffffff ffffffff ffffffff ffffffff ffffffff fffffffe fffffc2f")}function b(){g.call(this,"p224","ffffffff ffffffff ffffffff ffffffff 00000000 00000000 00000001")}function x(){g.call(this,"p192","ffffffff ffffffff ffffffff fffffffe ffffffff ffffffff")}function _(){g.call(this,"25519","7fffffffffffffff ffffffffffffffff ffffffffffffffff ffffffffffffffed")}function w(t){if("string"==typeof t){var e=a._prime(t);this.m=e.p,this.prime=e}else n(t.gtn(1),"modulus must be greater than 1"),this.m=t,this.prime=null}function M(t){w.call(this,t),this.shift=this.m.bitLength(),this.shift%26!=0&&(this.shift+=26-this.shift%26),this.r=new a(1).iushln(this.shift),this.r2=this.imod(this.r.sqr()),this.rinv=this.r._invmp(this.m),this.minv=this.rinv.mul(this.r).isubn(1).div(this.m),this.minv=this.minv.umod(this.r),this.minv=this.r.sub(this.minv)}g.prototype._tmp=function(){var t=new a(null);return t.words=new Array(Math.ceil(this.n/13)),t},g.prototype.ireduce=function(t){var e,r=t;do{this.split(r,this.tmp),e=(r=(r=this.imulK(r)).iadd(this.tmp)).bitLength()}while(e>this.n);var n=e<this.n?-1:r.ucmp(this.p);return 0===n?(r.words[0]=0,r.length=1):n>0?r.isub(this.p):r.strip(),r},g.prototype.split=function(t,e){t.iushrn(this.n,0,e)},g.prototype.imulK=function(t){return t.imul(this.k)},i(y,g),y.prototype.split=function(t,e){for(var r=Math.min(t.length,9),n=0;n<r;n++)e.words[n]=t.words[n];if(e.length=r,t.length<=9)return t.words[0]=0,void(t.length=1);var i=t.words[9];for(e.words[e.length++]=4194303&i,n=10;n<t.length;n++){var a=0|t.words[n];t.words[n-10]=(4194303&a)<<4|i>>>22,i=a}i>>>=22,t.words[n-10]=i,0===i&&t.length>10?t.length-=10:t.length-=9},y.prototype.imulK=function(t){t.words[t.length]=0,t.words[t.length+1]=0,t.length+=2;for(var e=0,r=0;r<t.length;r++){var n=0|t.words[r];e+=977*n,t.words[r]=67108863&e,e=64*n+(e/67108864|0)}return 0===t.words[t.length-1]&&(t.length--,0===t.words[t.length-1]&&t.length--),t},i(b,g),i(x,g),i(_,g),_.prototype.imulK=function(t){for(var e=0,r=0;r<t.length;r++){var n=19*(0|t.words[r])+e,i=67108863&n;n>>>=26,t.words[r]=i,e=n}return 0!==e&&(t.words[t.length++]=e),t},a._prime=function(t){if(v[t])return v[t];var e;if("k256"===t)e=new y;else if("p224"===t)e=new b;else if("p192"===t)e=new x;else{if("p25519"!==t)throw new Error("Unknown prime "+t);e=new _}return v[t]=e,e},w.prototype._verify1=function(t){n(0===t.negative,"red works only with positives"),n(t.red,"red works only with red numbers")},w.prototype._verify2=function(t,e){n(0==(t.negative|e.negative),"red works only with positives"),n(t.red&&t.red===e.red,"red works only with red numbers")},w.prototype.imod=function(t){return this.prime?this.prime.ireduce(t)._forceRed(this):t.umod(this.m)._forceRed(this)},w.prototype.neg=function(t){return t.isZero()?t.clone():this.m.sub(t)._forceRed(this)},w.prototype.add=function(t,e){this._verify2(t,e);var r=t.add(e);return r.cmp(this.m)>=0&&r.isub(this.m),r._forceRed(this)},w.prototype.iadd=function(t,e){this._verify2(t,e);var r=t.iadd(e);return r.cmp(this.m)>=0&&r.isub(this.m),r},w.prototype.sub=function(t,e){this._verify2(t,e);var r=t.sub(e);return r.cmpn(0)<0&&r.iadd(this.m),r._forceRed(this)},w.prototype.isub=function(t,e){this._verify2(t,e);var r=t.isub(e);return r.cmpn(0)<0&&r.iadd(this.m),r},w.prototype.shl=function(t,e){return this._verify1(t),this.imod(t.ushln(e))},w.prototype.imul=function(t,e){return this._verify2(t,e),this.imod(t.imul(e))},w.prototype.mul=function(t,e){return this._verify2(t,e),this.imod(t.mul(e))},w.prototype.isqr=function(t){return this.imul(t,t.clone())},w.prototype.sqr=function(t){return this.mul(t,t)},w.prototype.sqrt=function(t){if(t.isZero())return t.clone();var e=this.m.andln(3);if(n(e%2==1),3===e){var r=this.m.add(new a(1)).iushrn(2);return this.pow(t,r)}for(var i=this.m.subn(1),o=0;!i.isZero()&&0===i.andln(1);)o++,i.iushrn(1);n(!i.isZero());var s=new a(1).toRed(this),l=s.redNeg(),c=this.m.subn(1).iushrn(1),u=this.m.bitLength();for(u=new a(2*u*u).toRed(this);0!==this.pow(u,c).cmp(l);)u.redIAdd(l);for(var f=this.pow(u,i),h=this.pow(t,i.addn(1).iushrn(1)),d=this.pow(t,i),p=o;0!==d.cmp(s);){for(var m=d,v=0;0!==m.cmp(s);v++)m=m.redSqr();n(v<p);var g=this.pow(f,new a(1).iushln(p-v-1));h=h.redMul(g),f=g.redSqr(),d=d.redMul(f),p=v}return h},w.prototype.invm=function(t){var e=t._invmp(this.m);return 0!==e.negative?(e.negative=0,this.imod(e).redNeg()):this.imod(e)},w.prototype.pow=function(t,e){if(e.isZero())return new a(1).toRed(this);if(0===e.cmpn(1))return t.clone();var r=new Array(16);r[0]=new a(1).toRed(this),r[1]=t;for(var n=2;n<r.length;n++)r[n]=this.mul(r[n-1],t);var i=r[0],o=0,s=0,l=e.bitLength()%26;for(0===l&&(l=26),n=e.length-1;n>=0;n--){for(var c=e.words[n],u=l-1;u>=0;u--){var f=c>>u&1;i!==r[0]&&(i=this.sqr(i)),0!==f||0!==o?(o<<=1,o|=f,(4===++s||0===n&&0===u)&&(i=this.mul(i,r[o]),s=0,o=0)):s=0}l=26}return i},w.prototype.convertTo=function(t){var e=t.umod(this.m);return e===t?e.clone():e},w.prototype.convertFrom=function(t){var e=t.clone();return e.red=null,e},a.mont=function(t){return new M(t)},i(M,w),M.prototype.convertTo=function(t){return this.imod(t.ushln(this.shift))},M.prototype.convertFrom=function(t){var e=this.imod(t.mul(this.rinv));return e.red=null,e},M.prototype.imul=function(t,e){if(t.isZero()||e.isZero())return t.words[0]=0,t.length=1,t;var r=t.imul(e),n=r.maskn(this.shift).mul(this.minv).imaskn(this.shift).mul(this.m),i=r.isub(n).iushrn(this.shift),a=i;return i.cmp(this.m)>=0?a=i.isub(this.m):i.cmpn(0)<0&&(a=i.iadd(this.m)),a._forceRed(this)},M.prototype.mul=function(t,e){if(t.isZero()||e.isZero())return new a(0)._forceRed(this);var 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f=r-1;f>=0;--f)n.push(a(l[f],c[f],n[o]+u*i[o])),i.push(0),o+=1}}},{"binary-search-bounds":70,"cubic-hermite":115}],143:[function(t,e,r){var n=t("dtype");e.exports=function(t,e,r){if(!t)throw new TypeError("must specify data as first parameter");if(r=0|+(r||0),Array.isArray(t)&&Array.isArray(t[0])){var i=t[0].length,a=t.length*i;e&&"string"!=typeof e||(e=new(n(e||"float32"))(a+r));var o=e.length-r;if(a!==o)throw new Error("source length "+a+" ("+i+"x"+t.length+") does not match destination length "+o);for(var s=0,l=r;s<t.length;s++)for(var c=0;c<i;c++)e[l++]=t[s][c]}else if(e&&"string"!=typeof e)e.set(t,r);else{var u=n(e||"float32");0===r?e=new u(t):(e=new u(t.length+r)).set(t,r)}return e}},{dtype:133}],144:[function(t,e,r){"use strict";e.exports=function(t){return new c(t||p,null)};var n=0,i=1;function a(t,e,r,n,i,a){this._color=t,this.key=e,this.value=r,this.left=n,this.right=i,this._count=a}function o(t){return new a(t._color,t.key,t.value,t.left,t.right,t._count)}function 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e=this.root,r=[];;){if(r.push(e),e.left){if(t<e.left._count){e=e.left;continue}t-=e.left._count}if(!t)return new f(this,r);if(t-=1,!e.right)break;if(t>=e.right._count)break;e=e.right}return new f(this,[])},u.ge=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<=0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.gt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.lt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.le=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>=0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.find=function(t){for(var e=this._compare,r=this.root,n=[];r;){var i=e(t,r.key);if(n.push(r),0===i)return new 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a(r._color,r.key,r.value,r.left,e[u+1],r._count)}if((r=e[e.length-1]).left&&r.right){var f=e.length;for(r=r.left;r.right;)e.push(r),r=r.right;var h=e[f-1];e.push(new a(r._color,h.key,h.value,r.left,r.right,r._count)),e[f-1].key=r.key,e[f-1].value=r.value;for(u=e.length-2;u>=f;--u)r=e[u],e[u]=new a(r._color,r.key,r.value,r.left,e[u+1],r._count);e[f-1].left=e[f]}if((r=e[e.length-1])._color===n){var p=e[e.length-2];p.left===r?p.left=null:p.right===r&&(p.right=null),e.pop();for(u=0;u<e.length;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(r.left||r.right){r.left?d(r,r.left):r.right&&d(r,r.right),r._color=i;for(u=0;u<e.length-1;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(1===e.length)return new c(this.tree._compare,null);for(u=0;u<e.length;++u)e[u]._count--;var m=e[e.length-2];return function(t){for(var e,r,a,c,u=t.length-1;u>=0;--u){if(e=t[u],0===u)return void(e._color=i);if((r=t[u-1]).left===e){if((a=r.right).right&&a.right._color===n)return c=(a=r.right=o(a)).right=o(a.right),r.right=a.left,a.left=r,a.right=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),void(t[u-1]=a);if(a.left&&a.left._color===n)return c=(a=r.right=o(a)).left=o(a.left),r.right=c.left,a.left=c.right,c.left=r,c.right=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).left===r?f.left=c:f.right=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.right=s(n,a));r.right=s(n,a);continue}a=o(a),r.right=a.left,a.left=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}else{if((a=r.left).left&&a.left._color===n)return c=(a=r.left=o(a)).left=o(a.left),r.left=a.right,a.right=r,a.left=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),void(t[u-1]=a);if(a.right&&a.right._color===n)return c=(a=r.left=o(a)).right=o(a.right),r.left=c.right,a.right=c.left,c.right=r,c.left=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).right===r?f.right=c:f.left=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.left=s(n,a));r.left=s(n,a);continue}var f;a=o(a),r.left=a.right,a.right=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}}}(e),m.left===r?m.left=null:m.right=null,new c(this.tree._compare,e[0])},Object.defineProperty(h,"key",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].key},enumerable:!0}),Object.defineProperty(h,"value",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].value},enumerable:!0}),Object.defineProperty(h,"index",{get:function(){var t=0,e=this._stack;if(0===e.length){var r=this.tree.root;return 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c(this.tree._compare,r[0])},h.prev=function(){var t=this._stack;if(0!==t.length){var e=t[t.length-1];if(e.left)for(e=e.left;e;)t.push(e),e=e.right;else for(t.pop();t.length>0&&t[t.length-1].left===e;)e=t[t.length-1],t.pop()}},Object.defineProperty(h,"hasPrev",{get:function(){var t=this._stack;if(0===t.length)return!1;if(t[t.length-1].left)return!0;for(var e=t.length-1;e>0;--e)if(t[e-1].right===t[e])return!0;return!1}})},{}],145:[function(t,e,r){var n=[.9999999999998099,676.5203681218851,-1259.1392167224028,771.3234287776531,-176.6150291621406,12.507343278686905,-.13857109526572012,9984369578019572e-21,1.5056327351493116e-7],i=607/128,a=[.9999999999999971,57.15623566586292,-59.59796035547549,14.136097974741746,-.4919138160976202,3399464998481189e-20,4652362892704858e-20,-9837447530487956e-20,.0001580887032249125,-.00021026444172410488,.00021743961811521265,-.0001643181065367639,8441822398385275e-20,-26190838401581408e-21,36899182659531625e-22];function o(t){if(t<0)return 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l=i.point(a.geometry[0][s],e,t.z2,t.x,t.y);if(l[0]!==-r&&l[0]!==e+r||l[1]!==-r&&l[1]!==e+r)return!1}return!0}l.prototype.options={maxZoom:14,indexMaxZoom:5,indexMaxPoints:1e5,solidChildren:!1,tolerance:3,extent:4096,buffer:64,debug:0},l.prototype.splitTile=function(t,e,r,n,i,o,l){for(var d=[t,e,r,n],p=this.options,m=p.debug,v=null;d.length;){n=d.pop(),r=d.pop(),e=d.pop(),t=d.pop();var g=1<<e,y=c(e,r,n),b=this.tiles[y],x=e===p.maxZoom?0:p.tolerance/(g*p.extent);if(!b&&(m>1&&console.time("creation"),b=this.tiles[y]=s(t,g,r,n,x,e===p.maxZoom),this.tileCoords.push({z:e,x:r,y:n}),m)){m>1&&(console.log("tile z%d-%d-%d (features: %d, points: %d, simplified: %d)",e,r,n,b.numFeatures,b.numPoints,b.numSimplified),console.timeEnd("creation"));var _="z"+e;this.stats[_]=(this.stats[_]||0)+1,this.total++}if(b.source=t,i){if(e===p.maxZoom||e===i)continue;var w=1<<i-e;if(r!==Math.floor(o/w)||n!==Math.floor(l/w))continue}else 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m=l("labels");l("labelFont")&&(m=!0),o("labelEnable"),a("labelSize"),a("labelPad"),c("labelColor"),o("lineEnable"),o("lineMirror"),a("lineWidth"),c("lineColor"),o("lineTickEnable"),o("lineTickMirror"),a("lineTickLength"),a("lineTickWidth"),c("lineTickColor"),o("gridEnable"),a("gridWidth"),c("gridColor"),o("zeroEnable"),c("zeroLineColor"),a("zeroLineWidth"),o("backgroundEnable"),c("backgroundColor"),this._text?this._text&&(m||u)&&this._text.update(this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont):this._text=n(this.gl,this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont),this._lines&&u&&(this._lines.dispose(),this._lines=null),this._lines||(this._lines=i(this.gl,this.bounds,this.ticks))};var d=[new h,new h,new h];function p(t,e,r,n,i){for(var a=t.primalOffset,o=t.primalMinor,s=t.mirrorOffset,l=t.mirrorMinor,c=n[e],u=0;u<3;++u)if(e!==u){var f=a,h=s,d=o,p=l;c&1<<u&&(f=s,h=a,d=l,p=o),f[u]=r[0][u],h[u]=r[1][u],i[u]>0?(d[u]=-1,p[u]=0):(d[u]=0,p[u]=1)}}var m=[0,0,0],v={model:l,view:l,projection:l};f.isOpaque=function(){return!0},f.isTransparent=function(){return!1},f.drawTransparent=function(t){};var g=[0,0,0],y=[0,0,0],b=[0,0,0];f.draw=function(t){t=t||v;for(var e=this.gl,r=t.model||l,n=t.view||l,i=t.projection||l,a=this.bounds,s=o(r,n,i,a),u=s.cubeEdges,f=s.axis,h=n[12],x=n[13],_=n[14],w=n[15],M=this.pixelRatio*(i[3]*h+i[7]*x+i[11]*_+i[15]*w)/e.drawingBufferHeight,k=0;k<3;++k)this.lastCubeProps.cubeEdges[k]=u[k],this.lastCubeProps.axis[k]=f[k];var A=d;for(k=0;k<3;++k)p(d[k],k,this.bounds,u,f);e=this.gl;var T=m;for(k=0;k<3;++k)this.backgroundEnable[k]?T[k]=f[k]:T[k]=0;this._background.draw(r,n,i,a,T,this.backgroundColor),this._lines.bind(r,n,i,this);for(k=0;k<3;++k){var E=[0,0,0];f[k]>0?E[k]=a[1][k]:E[k]=a[0][k];for(var S=0;S<2;++S){var L=(k+1+S)%3,C=(k+1+(1^S))%3;this.gridEnable[L]&&this._lines.drawGrid(L,C,this.bounds,E,this.gridColor[L],this.gridWidth[L]*this.pixelRatio)}for(S=0;S<2;++S){L=(k+1+S)%3,C=(k+1+(1^S))%3;this.zeroEnable[C]&&a[0][C]<=0&&a[1][C]>=0&&this._lines.drawZero(L,C,this.bounds,E,this.zeroLineColor[C],this.zeroLineWidth[C]*this.pixelRatio)}}for(k=0;k<3;++k){this.lineEnable[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].primalOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio),this.lineMirror[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].mirrorOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio);var P=c(g,A[k].primalMinor),z=c(y,A[k].mirrorMinor),O=this.lineTickLength;for(S=0;S<3;++S){var D=M/r[5*S];P[S]*=O[S]*D,z[S]*=O[S]*D}this.lineTickEnable[k]&&this._lines.drawAxisTicks(k,A[k].primalOffset,P,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio),this.lineTickMirror[k]&&this._lines.drawAxisTicks(k,A[k].mirrorOffset,z,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio)}this._lines.unbind(),this._text.bind(r,n,i,this.pixelRatio);for(k=0;k<3;++k){var I=A[k].primalMinor,R=c(b,A[k].primalOffset);for(S=0;S<3;++S)this.lineTickEnable[k]&&(R[S]+=M*I[S]*Math.max(this.lineTickLength[S],0)/r[5*S]);if(this.tickEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.tickPad[S]/r[5*S];this._text.drawTicks(k,this.tickSize[k],this.tickAngle[k],R,this.tickColor[k])}if(this.labelEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.labelPad[S]/r[5*S];R[k]+=.5*(a[0][k]+a[1][k]),this._text.drawLabel(k,this.labelSize[k],this.labelAngle[k],R,this.labelColor[k])}}this._text.unbind()},f.dispose=function(){this._text.dispose(),this._lines.dispose(),this._background.dispose(),this._lines=null,this._text=null,this._background=null,this.gl=null}},{"./lib/background.js":158,"./lib/cube.js":159,"./lib/lines.js":160,"./lib/text.js":162,"./lib/ticks.js":163}],158:[function(t,e,r){"use strict";e.exports=function(t){for(var e=[],r=[],s=0,l=0;l<3;++l)for(var c=(l+1)%3,u=(l+2)%3,f=[0,0,0],h=[0,0,0],d=-1;d<=1;d+=2){r.push(s,s+2,s+1,s+1,s+2,s+3),f[l]=d,h[l]=d;for(var p=-1;p<=1;p+=2){f[c]=p;for(var m=-1;m<=1;m+=2)f[u]=m,e.push(f[0],f[1],f[2],h[0],h[1],h[2]),s+=1}var v=c;c=u,u=v}var g=n(t,new Float32Array(e)),y=n(t,new Uint16Array(r),t.ELEMENT_ARRAY_BUFFER),b=i(t,[{buffer:g,type:t.FLOAT,size:3,offset:0,stride:24},{buffer:g,type:t.FLOAT,size:3,offset:12,stride:24}],y),x=a(t);return x.attributes.position.location=0,x.attributes.normal.location=1,new o(t,g,b,x)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").bg;function o(t,e,r,n){this.gl=t,this.buffer=e,this.vao=r,this.shader=n}var s=o.prototype;s.draw=function(t,e,r,n,i,a){for(var o=!1,s=0;s<3;++s)o=o||i[s];if(o){var l=this.gl;l.enable(l.POLYGON_OFFSET_FILL),l.polygonOffset(1,2),this.shader.bind(),this.shader.uniforms={model:t,view:e,projection:r,bounds:n,enable:i,colors:a},this.vao.bind(),this.vao.draw(this.gl.TRIANGLES,36),this.vao.unbind(),l.disable(l.POLYGON_OFFSET_FILL)}},s.dispose=function(){this.vao.dispose(),this.buffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],159:[function(t,e,r){"use strict";e.exports=function(t,e,r,a){i(s,e,t),i(s,r,s);for(var d=0,y=0;y<2;++y){u[2]=a[y][2];for(var b=0;b<2;++b){u[1]=a[b][1];for(var x=0;x<2;++x)u[0]=a[x][0],h(l[d],u,s),d+=1}}for(var _=-1,y=0;y<8;++y){for(var w=l[y][3],M=0;M<3;++M)c[y][M]=l[y][M]/w;w<0&&(_<0?_=y:c[y][2]<c[_][2]&&(_=y))}if(_<0){_=0;for(var k=0;k<3;++k){for(var A=(k+2)%3,T=(k+1)%3,E=-1,S=-1,L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T);o(c[C],c[P],c[z],f)<0||(L?E=1:S=1)}if(E<0||S<0)S>E&&(_|=1<<k);else{for(var L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T),O=p([l[C],l[P],l[z],l[C+(1<<A)+(1<<T)]]);L?E=O:S=O}S>E&&(_|=1<<k)}}}for(var D=7^_,I=-1,y=0;y<8;++y)y!==_&&y!==D&&(I<0?I=y:c[I][1]>c[y][1]&&(I=y));for(var R=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D){R<0&&(R=N);var T=c[N];T[0]<c[R][0]&&(R=N)}}for(var F=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D&&N!==R){F<0&&(F=N);var T=c[N];T[0]>c[F][0]&&(F=N)}}var j=m;j[0]=j[1]=j[2]=0,j[n.log2(R^I)]=I&R,j[n.log2(I^F)]=I&F;var B=7^F;B===_||B===D?(B=7^R,j[n.log2(F^B)]=B&F):j[n.log2(R^B)]=B&R;for(var U=v,V=_,k=0;k<3;++k)U[k]=V&1<<k?-1:1;return g};var n=t("bit-twiddle"),i=t("gl-mat4/multiply"),a=(t("gl-mat4/invert"),t("split-polygon")),o=t("robust-orientation"),s=new Array(16),l=(new Array(16),new Array(8)),c=new Array(8),u=new Array(3),f=[0,0,0];function h(t,e,r){for(var n=0;n<4;++n){t[n]=r[12+n];for(var i=0;i<3;++i)t[n]+=e[i]*r[4*i+n]}}!function(){for(var t=0;t<8;++t)l[t]=[1,1,1,1],c[t]=[1,1,1]}();var d=[[0,0,1,0,0],[0,0,-1,1,0],[0,-1,0,1,0],[0,1,0,1,0],[-1,0,0,1,0],[1,0,0,1,0]];function p(t){for(var e=0;e<d.length;++e)if((t=a.positive(t,d[e])).length<3)return 0;var r=t[0],n=r[0]/r[3],i=r[1]/r[3],o=0;for(e=1;e+1<t.length;++e){var s=t[e],l=t[e+1],c=s[0]/s[3]-n,u=s[1]/s[3]-i,f=l[0]/l[3]-n,h=l[1]/l[3]-i;o+=Math.abs(c*h-u*f)}return o}var m=[1,1,1],v=[0,0,0],g={cubeEdges:m,axis:v}},{"bit-twiddle":71,"gl-mat4/invert":186,"gl-mat4/multiply":188,"robust-orientation":495,"split-polygon":515}],160:[function(t,e,r){"use strict";e.exports=function(t,e,r){var o=[],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[0,0,0];o.push(0,0,1,0,1,1,0,0,-1,0,0,-1,0,1,1,0,1,-1);for(var f=0;f<3;++f){for(var h=o.length/3|0,p=0;p<r[f].length;++p){var m=+r[f][p].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;s[f]=h,l[f]=v-h;for(var h=o.length/3|0,g=0;g<r[f].length;++g){var m=+r[f][g].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;c[f]=h,u[f]=v-h}var y=n(t,new Float32Array(o)),b=i(t,[{buffer:y,type:t.FLOAT,size:3,stride:0,offset:0}]),x=a(t);return x.attributes.position.location=0,new d(t,y,b,x,l,s,u,c)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").line,o=[0,0,0],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[1,1];function f(t){return t[0]=t[1]=t[2]=0,t}function h(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t}function d(t,e,r,n,i,a,o,s){this.gl=t,this.vertBuffer=e,this.vao=r,this.shader=n,this.tickCount=i,this.tickOffset=a,this.gridCount=o,this.gridOffset=s}var p=d.prototype;p.bind=function(t,e,r){this.shader.bind(),this.shader.uniforms.model=t,this.shader.uniforms.view=e,this.shader.uniforms.projection=r,u[0]=this.gl.drawingBufferWidth,u[1]=this.gl.drawingBufferHeight,this.shader.uniforms.screenShape=u,this.vao.bind()},p.unbind=function(){this.vao.unbind()},p.drawAxisLine=function(t,e,r,n,i){var a=f(s);this.shader.uniforms.majorAxis=s,a[t]=e[1][t]-e[0][t],this.shader.uniforms.minorAxis=a;var o,u=h(c,r);u[t]+=e[0][t],this.shader.uniforms.offset=u,this.shader.uniforms.lineWidth=i,this.shader.uniforms.color=n,(o=f(l))[(t+2)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6),(o=f(l))[(t+1)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6)},p.drawAxisTicks=function(t,e,r,n,i){if(this.tickCount[t]){var a=f(o);a[t]=1,this.shader.uniforms.majorAxis=a,this.shader.uniforms.offset=e,this.shader.uniforms.minorAxis=r,this.shader.uniforms.color=n,this.shader.uniforms.lineWidth=i;var s=f(l);s[t]=1,this.shader.uniforms.screenAxis=s,this.vao.draw(this.gl.TRIANGLES,this.tickCount[t],this.tickOffset[t])}},p.drawGrid=function(t,e,r,n,i,a){if(this.gridCount[t]){var u=f(s);u[e]=r[1][e]-r[0][e],this.shader.uniforms.minorAxis=u;var d=h(c,n);d[e]+=r[0][e],this.shader.uniforms.offset=d;var p=f(o);p[t]=1,this.shader.uniforms.majorAxis=p;var m=f(l);m[t]=1,this.shader.uniforms.screenAxis=m,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,this.gridCount[t],this.gridOffset[t])}},p.drawZero=function(t,e,r,n,i,a){var o=f(s);this.shader.uniforms.majorAxis=o,o[t]=r[1][t]-r[0][t],this.shader.uniforms.minorAxis=o;var u=h(c,n);u[t]+=r[0][t],this.shader.uniforms.offset=u;var d=f(l);d[e]=1,this.shader.uniforms.screenAxis=d,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,6)},p.dispose=function(){this.vao.dispose(),this.vertBuffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],161:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, majorAxis, minorAxis, screenAxis;\nuniform float lineWidth;\nuniform vec2 screenShape;\n\nvec3 project(vec3 p) {\n  vec4 pp = projection * view * model * vec4(p, 1.0);\n  return pp.xyz / max(pp.w, 0.0001);\n}\n\nvoid main() {\n  vec3 major = position.x * majorAxis;\n  vec3 minor = position.y * minorAxis;\n\n  vec3 vPosition = major + minor + offset;\n  vec3 pPosition = project(vPosition);\n  vec3 offset = project(vPosition + screenAxis * position.z);\n\n  vec2 screen = normalize((offset - pPosition).xy * screenShape) / screenShape;\n\n  gl_Position = vec4(pPosition + vec3(0.5 * screen * lineWidth, 0), 1.0);\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.line=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"}])};var s=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, axis;\nuniform float scale, angle, pixelScale;\nuniform vec2 resolution;\n\nvoid main() {  \n  //Compute plane offset\n  vec2 planeCoord = position.xy * pixelScale;\n  mat2 planeXform = scale * mat2(cos(angle), sin(angle),\n                                -sin(angle), cos(angle));\n  vec2 viewOffset = 2.0 * planeXform * planeCoord / resolution;\n\n  //Compute world offset\n  float axisDistance = position.z;\n  vec3 dataPosition = axisDistance * axis + offset;\n  vec4 worldPosition = model * vec4(dataPosition, 1);\n  \n  //Compute clip position\n  vec4 viewPosition = view * worldPosition;\n  vec4 clipPosition = projection * viewPosition;\n  clipPosition /= clipPosition.w;\n\n  //Apply text offset in clip coordinates\n  clipPosition += vec4(viewOffset, 0, 0);\n\n  //Done\n  gl_Position = clipPosition;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.text=function(t){return i(t,s,l,null,[{name:"position",type:"vec3"}])};var c=n(["#define GLSLIFY 1\nattribute vec3 position;\nattribute vec3 normal;\n\nuniform mat4 model, view, projection;\nuniform vec3 enable;\nuniform vec3 bounds[2];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  if(dot(normal, enable) > 0.0) {\n    vec3 nPosition = mix(bounds[0], bounds[1], 0.5 * (position + 1.0));\n    gl_Position = projection * view * model * vec4(nPosition, 1.0);\n  } else {\n    gl_Position = vec4(0,0,0,0);\n  }\n  colorChannel = abs(normal);\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 colors[3];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  gl_FragColor = colorChannel.x * colors[0] + \n                 colorChannel.y * colors[1] +\n                 colorChannel.z * colors[2];\n}"]);r.bg=function(t){return i(t,c,u,null,[{name:"position",type:"vec3"},{name:"normal",type:"vec3"}])}},{"gl-shader":220,glslify:253}],162:[function(t,e,r){(function(r){"use strict";e.exports=function(t,e,r,a,s,l){var u=n(t),f=i(t,[{buffer:u,size:3}]),h=o(t);h.attributes.position.location=0;var d=new c(t,h,u,f);return d.update(e,r,a,s,l),d};var n=t("gl-buffer"),i=t("gl-vao"),a=t("vectorize-text"),o=t("./shaders").text,s=window||r.global||{},l=s.__TEXT_CACHE||{};s.__TEXT_CACHE={};function c(t,e,r,n){this.gl=t,this.shader=e,this.buffer=r,this.vao=n,this.tickOffset=this.tickCount=this.labelOffset=this.labelCount=null}var u=c.prototype,f=[0,0];u.bind=function(t,e,r,n){this.vao.bind(),this.shader.bind();var i=this.shader.uniforms;i.model=t,i.view=e,i.projection=r,i.pixelScale=n,f[0]=this.gl.drawingBufferWidth,f[1]=this.gl.drawingBufferHeight,this.shader.uniforms.resolution=f},u.unbind=function(){this.vao.unbind()},u.update=function(t,e,r,n,i){this.gl;var o=[];function s(t,e,r,n){var i=l[r];i||(i=l[r]={});var s=i[e];s||(s=i[e]=function(t,e){try{return a(t,e)}catch(t){return console.warn("error vectorizing text:",t),{cells:[],positions:[]}}}(e,{triangles:!0,font:r,textAlign:"center",textBaseline:"middle"}));for(var c=(n||12)/12,u=s.positions,f=s.cells,h=0,d=f.length;h<d;++h)for(var p=f[h],m=2;m>=0;--m){var 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i.length}l.update=function(t){"lineWidth"in(t=t||{})&&(this.lineWidth=t.lineWidth,Array.isArray(this.lineWidth)||(this.lineWidth=[this.lineWidth,this.lineWidth,this.lineWidth])),"capSize"in t&&(this.capSize=t.capSize,Array.isArray(this.capSize)||(this.capSize=[this.capSize,this.capSize,this.capSize])),"opacity"in t&&(this.opacity=t.opacity);var e=t.color||[[0,0,0],[0,0,0],[0,0,0]],r=t.position,n=t.error;if(Array.isArray(e[0])||(e=[e,e,e]),r&&n){var i=[],a=r.length,o=0;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.lineCount=[0,0,0];for(var s=0;s<3;++s){this.lineOffset[s]=o;t:for(var l=0;l<a;++l){for(var u=r[l],h=0;h<3;++h)if(isNaN(u[h])||!isFinite(u[h]))continue t;var d=n[l],p=e[s];if(Array.isArray(p[0])&&(p=e[l]),3===p.length&&(p=[p[0],p[1],p[2],1]),!isNaN(d[0][s])&&!isNaN(d[1][s])){var m;if(d[0][s]<0)(m=u.slice())[s]+=d[0][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s);if(d[1][s]>0)(m=u.slice())[s]+=d[1][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s)}}this.lineCount[s]=o-this.lineOffset[s]}this.buffer.update(i)}},l.dispose=function(){this.shader.dispose(),this.buffer.dispose(),this.vao.dispose()}},{"./shaders/index":170,"gl-buffer":165,"gl-vao":237}],169:[function(t,e,r){e.exports=function(t){"string"==typeof t&&(t=[t]);for(var e=[].slice.call(arguments,1),r=[],n=0;n<t.length-1;n++)r.push(t[n],e[n]||"");return r.push(t[n]),r.join("")}},{}],170:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, offset;\nattribute vec4 color;\nuniform mat4 model, view, projection;\nuniform float capSize;\nvarying vec4 fragColor;\nvarying vec3 fragPosition;\n\nvoid main() {\n  vec4 worldPosition  = model * vec4(position, 1.0);\n  worldPosition       = (worldPosition / worldPosition.w) + vec4(capSize * offset, 0.0);\n  gl_Position         = projection * view * worldPosition;\n  fragColor           = color;\n  fragPosition        = position;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec3 clipBounds[2];\nuniform float opacity;\nvarying vec3 fragPosition;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(fragPosition, clipBounds[0])) || any(greaterThan(fragPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = opacity * fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"offset",type:"vec3"}])}},{"gl-shader":220,glslify:169}],171:[function(t,e,r){"use strict";var n=t("gl-texture2d");e.exports=function(t,e,r,n){i||(i=t.FRAMEBUFFER_UNSUPPORTED,a=t.FRAMEBUFFER_INCOMPLETE_ATTACHMENT,o=t.FRAMEBUFFER_INCOMPLETE_DIMENSIONS,s=t.FRAMEBUFFER_INCOMPLETE_MISSING_ATTACHMENT);var c=t.getExtension("WEBGL_draw_buffers");!l&&c&&function(t,e){var r=t.getParameter(e.MAX_COLOR_ATTACHMENTS_WEBGL);l=new Array(r+1);for(var n=0;n<=r;++n){for(var i=new Array(r),a=0;a<n;++a)i[a]=t.COLOR_ATTACHMENT0+a;for(var a=n;a<r;++a)i[a]=t.NONE;l[n]=i}}(t,c);Array.isArray(e)&&(n=r,r=0|e[1],e=0|e[0]);if("number"!=typeof e)throw new Error("gl-fbo: Missing shape parameter");var u=t.getParameter(t.MAX_RENDERBUFFER_SIZE);if(e<0||e>u||r<0||r>u)throw new Error("gl-fbo: Parameters are too large for FBO");var f=1;if("color"in(n=n||{})){if((f=Math.max(0|n.color,0))<0)throw new Error("gl-fbo: Must specify a nonnegative number of colors");if(f>1){if(!c)throw new Error("gl-fbo: Multiple draw buffer extension not supported");if(f>t.getParameter(c.MAX_COLOR_ATTACHMENTS_WEBGL))throw new Error("gl-fbo: Context does not support "+f+" draw buffers")}}var h=t.UNSIGNED_BYTE,d=t.getExtension("OES_texture_float");if(n.float&&f>0){if(!d)throw new Error("gl-fbo: Context does not support floating point textures");h=t.FLOAT}else n.preferFloat&&f>0&&d&&(h=t.FLOAT);var m=!0;"depth"in n&&(m=!!n.depth);var v=!1;"stencil"in n&&(v=!!n.stencil);return new p(t,e,r,h,f,m,v,c)};var i,a,o,s,l=null;function c(t){return[t.getParameter(t.FRAMEBUFFER_BINDING),t.getParameter(t.RENDERBUFFER_BINDING),t.getParameter(t.TEXTURE_BINDING_2D)]}function u(t,e){t.bindFramebuffer(t.FRAMEBUFFER,e[0]),t.bindRenderbuffer(t.RENDERBUFFER,e[1]),t.bindTexture(t.TEXTURE_2D,e[2])}function f(t){switch(t){case i:throw new Error("gl-fbo: Framebuffer unsupported");case a:throw new Error("gl-fbo: Framebuffer incomplete attachment");case o:throw new Error("gl-fbo: Framebuffer incomplete dimensions");case s:throw new Error("gl-fbo: Framebuffer incomplete missing attachment");default:throw new Error("gl-fbo: Framebuffer failed for unspecified reason")}}function h(t,e,r,i,a,o){if(!i)return null;var s=n(t,e,r,a,i);return s.magFilter=t.NEAREST,s.minFilter=t.NEAREST,s.mipSamples=1,s.bind(),t.framebufferTexture2D(t.FRAMEBUFFER,o,t.TEXTURE_2D,s.handle,0),s}function d(t,e,r,n,i){var a=t.createRenderbuffer();return t.bindRenderbuffer(t.RENDERBUFFER,a),t.renderbufferStorage(t.RENDERBUFFER,n,e,r),t.framebufferRenderbuffer(t.FRAMEBUFFER,i,t.RENDERBUFFER,a),a}function p(t,e,r,n,i,a,o,s){this.gl=t,this._shape=[0|e,0|r],this._destroyed=!1,this._ext=s,this.color=new Array(i);for(var p=0;p<i;++p)this.color[p]=null;this._color_rb=null,this.depth=null,this._depth_rb=null,this._colorType=n,this._useDepth=a,this._useStencil=o;var m=this,v=[0|e,0|r];Object.defineProperties(v,{0:{get:function(){return m._shape[0]},set:function(t){return m.width=t}},1:{get:function(){return m._shape[1]},set:function(t){return m.height=t}}}),this._shapeVector=v,function(t){var e=c(t.gl),r=t.gl,n=t.handle=r.createFramebuffer(),i=t._shape[0],a=t._shape[1],o=t.color.length,s=t._ext,p=t._useStencil,m=t._useDepth,v=t._colorType;r.bindFramebuffer(r.FRAMEBUFFER,n);for(var g=0;g<o;++g)t.color[g]=h(r,i,a,v,r.RGBA,r.COLOR_ATTACHMENT0+g);0===o?(t._color_rb=d(r,i,a,r.RGBA4,r.COLOR_ATTACHMENT0),s&&s.drawBuffersWEBGL(l[0])):o>1&&s.drawBuffersWEBGL(l[o]);var y=r.getExtension("WEBGL_depth_texture");y?p?t.depth=h(r,i,a,y.UNSIGNED_INT_24_8_WEBGL,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m&&(t.depth=h(r,i,a,r.UNSIGNED_SHORT,r.DEPTH_COMPONENT,r.DEPTH_ATTACHMENT)):m&&p?t._depth_rb=d(r,i,a,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m?t._depth_rb=d(r,i,a,r.DEPTH_COMPONENT16,r.DEPTH_ATTACHMENT):p&&(t._depth_rb=d(r,i,a,r.STENCIL_INDEX,r.STENCIL_ATTACHMENT));var b=r.checkFramebufferStatus(r.FRAMEBUFFER);if(b!==r.FRAMEBUFFER_COMPLETE){for(t._destroyed=!0,r.bindFramebuffer(r.FRAMEBUFFER,null),r.deleteFramebuffer(t.handle),t.handle=null,t.depth&&(t.depth.dispose(),t.depth=null),t._depth_rb&&(r.deleteRenderbuffer(t._depth_rb),t._depth_rb=null),g=0;g<t.color.length;++g)t.color[g].dispose(),t.color[g]=null;t._color_rb&&(r.deleteRenderbuffer(t._color_rb),t._color_rb=null),u(r,e),f(b)}u(r,e)}(this)}var m=p.prototype;function v(t,e,r){if(t._destroyed)throw new Error("gl-fbo: Can't resize destroyed FBO");if(t._shape[0]!==e||t._shape[1]!==r){var n=t.gl,i=n.getParameter(n.MAX_RENDERBUFFER_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-fbo: Can't resize FBO, invalid dimensions");t._shape[0]=e,t._shape[1]=r;for(var a=c(n),o=0;o<t.color.length;++o)t.color[o].shape=t._shape;t._color_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._color_rb),n.renderbufferStorage(n.RENDERBUFFER,n.RGBA4,t._shape[0],t._shape[1])),t.depth&&(t.depth.shape=t._shape),t._depth_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._depth_rb),t._useDepth&&t._useStencil?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_STENCIL,t._shape[0],t._shape[1]):t._useDepth?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_COMPONENT16,t._shape[0],t._shape[1]):t._useStencil&&n.renderbufferStorage(n.RENDERBUFFER,n.STENCIL_INDEX,t._shape[0],t._shape[1])),n.bindFramebuffer(n.FRAMEBUFFER,t.handle);var s=n.checkFramebufferStatus(n.FRAMEBUFFER);s!==n.FRAMEBUFFER_COMPLETE&&(t.dispose(),u(n,a),f(s)),u(n,a)}}Object.defineProperties(m,{shape:{get:function(){return this._destroyed?[0,0]:this._shapeVector},set:function(t){if(Array.isArray(t)||(t=[0|t,0|t]),2!==t.length)throw new Error("gl-fbo: Shape vector must be length 2");var e=0|t[0],r=0|t[1];return v(this,e,r),[e,r]},enumerable:!1},width:{get:function(){return this._destroyed?0:this._shape[0]},set:function(t){return v(this,t|=0,this._shape[1]),t},enumerable:!1},height:{get:function(){return this._destroyed?0:this._shape[1]},set:function(t){return t|=0,v(this,this._shape[0],t),t},enumerable:!1}}),m.bind=function(){if(!this._destroyed){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,this.handle),t.viewport(0,0,this._shape[0],this._shape[1])}},m.dispose=function(){if(!this._destroyed){this._destroyed=!0;var t=this.gl;t.deleteFramebuffer(this.handle),this.handle=null,this.depth&&(this.depth.dispose(),this.depth=null),this._depth_rb&&(t.deleteRenderbuffer(this._depth_rb),this._depth_rb=null);for(var e=0;e<this.color.length;++e)this.color[e].dispose(),this.color[e]=null;this._color_rb&&(t.deleteRenderbuffer(this._color_rb),this._color_rb=null)}}},{"gl-texture2d":233}],172:[function(t,e,r){var n=t("sprintf-js").sprintf,i=t("gl-constants/lookup"),a=t("glsl-shader-name"),o=t("add-line-numbers");e.exports=function(t,e,r){"use strict";var s=a(e)||"of unknown name (see npm glsl-shader-name)",l="unknown type";void 0!==r&&(l=r===i.FRAGMENT_SHADER?"fragment":"vertex");for(var c=n("Error compiling %s shader %s:\n",l,s),u=n("%s%s",c,t),f=t.split("\n"),h={},d=0;d<f.length;d++){var p=f[d];if(""!==p&&"\0"!==p){var m=parseInt(p.split(":")[2]);if(isNaN(m))throw new Error(n("Could not parse error: %s",p));h[m]=p}}for(var v=o(e).split("\n"),d=0;d<v.length;d++)if(h[d+3]||h[d+2]||h[d+1]){var g=v[d];if(c+=g+"\n",h[d+1]){var y=h[d+1];y=y.substr(y.split(":",3).join(":").length+1).trim(),c+=n("^^^ %s\n\n",y)}}return{long:c.trim(),short:u.trim()}}},{"add-line-numbers":44,"gl-constants/lookup":167,"glsl-shader-name":245,"sprintf-js":516}],173:[function(t,e,r){"use strict";e.exports=function(t,e){var r=t.gl,n=o(r,l.vertex,l.fragment),i=o(r,l.pickVertex,l.pickFragment),a=s(r),u=s(r),f=s(r),h=s(r),d=new c(t,n,i,a,u,f,h);return d.update(e),t.addObject(d),d};var n=t("binary-search-bounds"),i=t("iota-array"),a=t("typedarray-pool"),o=t("gl-shader"),s=t("gl-buffer"),l=t("./lib/shaders");function c(t,e,r,n,i,a,o){this.plot=t,this.shader=e,this.pickShader=r,this.positionBuffer=n,this.weightBuffer=i,this.colorBuffer=a,this.idBuffer=o,this.xData=[],this.yData=[],this.shape=[0,0],this.bounds=[1/0,1/0,-1/0,-1/0],this.pickOffset=0}var u,f=c.prototype,h=[0,0,1,0,0,1,1,0,1,1,0,1];f.draw=(u=[1,0,0,0,1,0,0,0,1],function(){var t=this.plot,e=this.shader,r=this.bounds,n=this.numVertices;if(!(n<=0)){var i=t.gl,a=t.dataBox,o=r[2]-r[0],s=r[3]-r[1],l=a[2]-a[0],c=a[3]-a[1];u[0]=2*o/l,u[4]=2*s/c,u[6]=2*(r[0]-a[0])/l-1,u[7]=2*(r[1]-a[1])/c-1,e.bind();var f=e.uniforms;f.viewTransform=u,f.shape=this.shape;var h=e.attributes;this.positionBuffer.bind(),h.position.pointer(),this.weightBuffer.bind(),h.weight.pointer(i.UNSIGNED_BYTE,!1),this.colorBuffer.bind(),h.color.pointer(i.UNSIGNED_BYTE,!0),i.drawArrays(i.TRIANGLES,0,n)}}),f.drawPick=function(){var t=[1,0,0,0,1,0,0,0,1],e=[0,0,0,0];return function(r){var n=this.plot,i=this.pickShader,a=this.bounds,o=this.numVertices;if(!(o<=0)){var s=n.gl,l=n.dataBox,c=a[2]-a[0],u=a[3]-a[1],f=l[2]-l[0],h=l[3]-l[1];t[0]=2*c/f,t[4]=2*u/h,t[6]=2*(a[0]-l[0])/f-1,t[7]=2*(a[1]-l[1])/h-1;for(var d=0;d<4;++d)e[d]=r>>8*d&255;this.pickOffset=r,i.bind();var p=i.uniforms;p.viewTransform=t,p.pickOffset=e,p.shape=this.shape;var m=i.attributes;return this.positionBuffer.bind(),m.position.pointer(),this.weightBuffer.bind(),m.weight.pointer(s.UNSIGNED_BYTE,!1),this.idBuffer.bind(),m.pickId.pointer(s.UNSIGNED_BYTE,!1),s.drawArrays(s.TRIANGLES,0,o),r+this.shape[0]*this.shape[1]}}}(),f.pick=function(t,e,r){var n=this.pickOffset,i=this.shape[0]*this.shape[1];if(r<n||r>=n+i)return null;var a=r-n,o=this.xData,s=this.yData;return{object:this,pointId:a,dataCoord:[o[a%this.shape[0]],s[a/this.shape[0]|0]]}},f.update=function(t){var e=(t=t||{}).shape||[0,0],r=t.x||i(e[0]),o=t.y||i(e[1]),s=t.z||new Float32Array(e[0]*e[1]);this.xData=r,this.yData=o;var l=t.colorLevels||[0],c=t.colorValues||[0,0,0,1],u=l.length,f=this.bounds,d=f[0]=r[0],p=f[1]=o[0],m=1/((f[2]=r[r.length-1])-d),v=1/((f[3]=o[o.length-1])-p),g=e[0],y=e[1];this.shape=[g,y];var b=(g-1)*(y-1)*(h.length>>>1);this.numVertices=b;for(var x=a.mallocUint8(4*b),_=a.mallocFloat32(2*b),w=a.mallocUint8(2*b),M=a.mallocUint32(b),k=0,A=0;A<y-1;++A)for(var T=v*(o[A]-p),E=v*(o[A+1]-p),S=0;S<g-1;++S)for(var L=m*(r[S]-d),C=m*(r[S+1]-d),P=0;P<h.length;P+=2){var z,O,D,I,R=h[P],N=h[P+1],F=s[(A+N)*g+(S+R)],j=n.le(l,F);if(j<0)z=c[0],O=c[1],D=c[2],I=c[3];else if(j===u-1)z=c[4*u-4],O=c[4*u-3],D=c[4*u-2],I=c[4*u-1];else{var B=(F-l[j])/(l[j+1]-l[j]),U=1-B,V=4*j,q=4*(j+1);z=U*c[V]+B*c[q],O=U*c[V+1]+B*c[q+1],D=U*c[V+2]+B*c[q+2],I=U*c[V+3]+B*c[q+3]}x[4*k]=255*z,x[4*k+1]=255*O,x[4*k+2]=255*D,x[4*k+3]=255*I,_[2*k]=.5*L+.5*C,_[2*k+1]=.5*T+.5*E,w[2*k]=R,w[2*k+1]=N,M[k]=A*g+S,k+=1}this.positionBuffer.update(_),this.weightBuffer.update(w),this.colorBuffer.update(x),this.idBuffer.update(M),a.free(_),a.free(x),a.free(w),a.free(M)},f.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.positionBuffer.dispose(),this.weightBuffer.dispose(),this.colorBuffer.dispose(),this.idBuffer.dispose(),this.plot.removeObject(this)}},{"./lib/shaders":174,"binary-search-bounds":175,"gl-buffer":165,"gl-shader":220,"iota-array":261,"typedarray-pool":534}],174:[function(t,e,r){"use strict";var n=t("glslify");e.exports={fragment:n(["precision lowp float;\n#define GLSLIFY 1\nvarying vec4 fragColor;\nvoid main() {\n  gl_FragColor = vec4(fragColor.rgb * fragColor.a, fragColor.a);\n}\n"]),vertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 color;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  fragColor = color;\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"]),pickFragment:n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nuniform vec2 shape;\nuniform vec4 pickOffset;\n\nvoid main() {\n  vec2 d = step(.5, vWeight);\n  vec4 id = fragId + pickOffset;\n  id.x += d.x + d.y*shape.x;\n\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  gl_FragColor = id/255.;\n}\n"]),pickVertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nvoid main() {\n  vWeight = weight;\n\n  fragId = pickId;\n\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"])}},{glslify:253}],175:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],176:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, nextPosition;\nattribute float arcLength, lineWidth;\nattribute vec4 color;\n\nuniform vec2 screenShape;\nuniform float pixelRatio;\nuniform mat4 model, view, projection;\n\nvarying vec4 fragColor;\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\n\nvoid main() {\n  vec4 projected = projection * view * model * vec4(position, 1.0);\n  vec4 tangentClip = projection * view * model * vec4(nextPosition - position, 0.0);\n  vec2 tangent = normalize(screenShape * tangentClip.xy);\n  vec2 offset = 0.5 * pixelRatio * lineWidth * vec2(tangent.y, -tangent.x) / screenShape;\n\n  gl_Position = vec4(projected.xy + projected.w * offset, projected.zw);\n\n  worldPosition = position;\n  pixelArcLength = arcLength;\n  fragColor = color;\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3      clipBounds[2];\nuniform sampler2D dashTexture;\nuniform float     dashScale;\nuniform float     opacity;\n\nvarying vec3    worldPosition;\nvarying float   pixelArcLength;\nvarying vec4    fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  float dashWeight = texture2D(dashTexture, vec2(dashScale * pixelArcLength, 0)).r;\n  if(dashWeight < 0.5) {\n    discard;\n  }\n  gl_FragColor = fragColor * opacity;\n}\n"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\n#define FLOAT_MAX  1.70141184e38\n#define FLOAT_MIN  1.17549435e-38\n\nlowp vec4 encode_float_1540259130(highp float v) {\n  highp float av = abs(v);\n\n  //Handle special cases\n  if(av < FLOAT_MIN) {\n    return vec4(0.0, 0.0, 0.0, 0.0);\n  } else if(v > FLOAT_MAX) {\n    return vec4(127.0, 128.0, 0.0, 0.0) / 255.0;\n  } else if(v < -FLOAT_MAX) {\n    return vec4(255.0, 128.0, 0.0, 0.0) / 255.0;\n  }\n\n  highp vec4 c = vec4(0,0,0,0);\n\n  //Compute exponent and mantissa\n  highp float e = floor(log2(av));\n  highp float m = av * pow(2.0, -e) - 1.0;\n  \n  //Unpack mantissa\n  c[1] = floor(128.0 * m);\n  m -= c[1] / 128.0;\n  c[2] = floor(32768.0 * m);\n  m -= c[2] / 32768.0;\n  c[3] = floor(8388608.0 * m);\n  \n  //Unpack exponent\n  highp float ebias = e + 127.0;\n  c[0] = floor(ebias / 2.0);\n  ebias -= c[0] * 2.0;\n  c[1] += floor(ebias) * 128.0; \n\n  //Unpack sign bit\n  c[0] += 128.0 * step(0.0, -v);\n\n  //Scale back to range\n  return c / 255.0;\n}\n\nuniform float pickId;\nuniform vec3 clipBounds[2];\n\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId/255.0, encode_float_1540259130(pixelArcLength).xyz);\n}"]),l=[{name:"position",type:"vec3"},{name:"nextPosition",type:"vec3"},{name:"arcLength",type:"float"},{name:"lineWidth",type:"float"},{name:"color",type:"vec4"}];r.createShader=function(t){return i(t,a,o,null,l)},r.createPickShader=function(t){return i(t,a,s,null,l)}},{"gl-shader":220,glslify:253}],177:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl||t.scene&&t.scene.gl,r=u(e);r.attributes.position.location=0,r.attributes.nextPosition.location=1,r.attributes.arcLength.location=2,r.attributes.lineWidth.location=3,r.attributes.color.location=4;var o=f(e);o.attributes.position.location=0,o.attributes.nextPosition.location=1,o.attributes.arcLength.location=2,o.attributes.lineWidth.location=3,o.attributes.color.location=4;for(var s=n(e),c=i(e,[{buffer:s,size:3,offset:0,stride:48},{buffer:s,size:3,offset:12,stride:48},{buffer:s,size:1,offset:24,stride:48},{buffer:s,size:1,offset:28,stride:48},{buffer:s,size:4,offset:32,stride:48}]),h=l(new Array(1024),[256,1,4]),d=0;d<1024;++d)h.data[d]=255;var p=a(e,h);p.wrap=e.REPEAT;var m=new v(e,r,o,s,c,p);return m.update(t),m};var n=t("gl-buffer"),i=t("gl-vao"),a=t("gl-texture2d"),o=t("glsl-read-float"),s=t("binary-search-bounds"),l=t("ndarray"),c=t("./lib/shaders"),u=c.createShader,f=c.createPickShader,h=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function d(t,e){for(var r=0,n=0;n<3;++n){var i=t[n]-e[n];r+=i*i}return Math.sqrt(r)}function p(t){for(var e=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],r=0;r<3;++r)e[0][r]=Math.max(t[0][r],e[0][r]),e[1][r]=Math.min(t[1][r],e[1][r]);return e}function m(t,e,r,n){this.arcLength=t,this.position=e,this.index=r,this.dataCoordinate=n}function v(t,e,r,n,i,a){this.gl=t,this.shader=e,this.pickShader=r,this.buffer=n,this.vao=i,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.points=[],this.arcLength=[],this.vertexCount=0,this.bounds=[[0,0,0],[0,0,0]],this.pickId=0,this.lineWidth=1,this.texture=a,this.dashScale=1,this.opacity=1,this.dirty=!0,this.pixelRatio=1}var g=v.prototype;g.isTransparent=function(){return this.opacity<1},g.isOpaque=function(){return this.opacity>=1},g.pickSlots=1,g.setPickBase=function(t){this.pickId=t},g.drawTransparent=g.draw=function(t){var e=this.gl,r=this.shader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,clipBounds:p(this.clipBounds),dashTexture:this.texture.bind(),dashScale:this.dashScale/this.arcLength[this.arcLength.length-1],opacity:this.opacity,screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.drawPick=function(t){var e=this.gl,r=this.pickShader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,pickId:this.pickId,clipBounds:p(this.clipBounds),screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.update=function(t){var e,r;this.dirty=!0;var n=!!t.connectGaps;"dashScale"in t&&(this.dashScale=t.dashScale),"opacity"in t&&(this.opacity=+t.opacity);var i=t.position||t.positions;if(i){var a=t.color||t.colors||[0,0,0,1],o=t.lineWidth||1,c=[],u=[],f=[],h=0,p=0,m=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],v=!1;t:for(e=1;e<i.length;++e){var g,y,b,x=i[e-1],_=i[e];for(u.push(h),f.push(x.slice()),r=0;r<3;++r){if(isNaN(x[r])||isNaN(_[r])||!isFinite(x[r])||!isFinite(_[r])){if(!n&&c.length>0){for(var w=0;w<24;++w)c.push(c[c.length-12]);p+=2,v=!0}continue t}m[0][r]=Math.min(m[0][r],x[r],_[r]),m[1][r]=Math.max(m[1][r],x[r],_[r])}Array.isArray(a[0])?(g=a[e-1],y=a[e]):g=y=a,3===g.length&&(g=[g[0],g[1],g[2],1]),3===y.length&&(y=[y[0],y[1],y[2],1]),b=Array.isArray(o)?o[e-1]:o;var M=h;if(h+=d(x,_),v){for(r=0;r<2;++r)c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3]);p+=2,v=!1}c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3],x[0],x[1],x[2],_[0],_[1],_[2],M,-b,g[0],g[1],g[2],g[3],_[0],_[1],_[2],x[0],x[1],x[2],h,-b,y[0],y[1],y[2],y[3],_[0],_[1],_[2],x[0],x[1],x[2],h,b,y[0],y[1],y[2],y[3]),p+=4}if(this.buffer.update(c),u.push(h),f.push(i[i.length-1].slice()),this.bounds=m,this.vertexCount=p,this.points=f,this.arcLength=u,"dashes"in t){var k=t.dashes.slice();for(k.unshift(0),e=1;e<k.length;++e)k[e]=k[e-1]+k[e];var A=l(new Array(1024),[256,1,4]);for(e=0;e<256;++e){for(r=0;r<4;++r)A.set(e,0,r,0);1&s.le(k,k[k.length-1]*e/255)?A.set(e,0,0,0):A.set(e,0,0,255)}this.texture.setPixels(A)}}},g.dispose=function(){this.shader.dispose(),this.vao.dispose(),this.buffer.dispose()},g.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=o(t.value[0],t.value[1],t.value[2],0),r=s.le(this.arcLength,e);if(r<0)return null;if(r===this.arcLength.length-1)return new m(this.arcLength[this.arcLength.length-1],this.points[this.points.length-1].slice(),r);for(var n=this.points[r],i=this.points[Math.min(r+1,this.points.length-1)],a=(e-this.arcLength[r])/(this.arcLength[r+1]-this.arcLength[r]),l=1-a,c=[0,0,0],u=0;u<3;++u)c[u]=l*n[u]+a*i[u];var f=Math.min(a<.5?r:r+1,this.points.length-1);return new m(e,c,f,this.points[f])}},{"./lib/shaders":176,"binary-search-bounds":70,"gl-buffer":165,"gl-texture2d":233,"gl-vao":237,"glsl-read-float":244,ndarray:439}],178:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r*a-i*n;return o?(o=1/o,t[0]=a*o,t[1]=-n*o,t[2]=-i*o,t[3]=r*o,t):null}},{}],179:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=u*o-s*c,h=-u*a+s*l,d=c*a-o*l,p=r*f+n*h+i*d;return p?(p=1/p,t[0]=f*p,t[1]=(-u*n+i*c)*p,t[2]=(s*n-i*o)*p,t[3]=h*p,t[4]=(u*r-i*l)*p,t[5]=(-s*r+i*a)*p,t[6]=d*p,t[7]=(-c*r+n*l)*p,t[8]=(o*r-n*a)*p,t):null}},{}],180:[function(t,e,r){e.exports=function(t){var e=new Float32Array(16);return e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],e[4]=t[4],e[5]=t[5],e[6]=t[6],e[7]=t[7],e[8]=t[8],e[9]=t[9],e[10]=t[10],e[11]=t[11],e[12]=t[12],e[13]=t[13],e[14]=t[14],e[15]=t[15],e}},{}],181:[function(t,e,r){e.exports=function(){var t=new Float32Array(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],182:[function(t,e,r){e.exports=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)}},{}],183:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],184:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t}},{}],185:[function(t,e,r){e.exports=function(t){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],186:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t}},{}],187:[function(t,e,r){var n=t("./identity");e.exports=function(t,e,r,i){var a,o,s,l,c,u,f,h,d,p,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<1e-6&&Math.abs(v-w)<1e-6&&Math.abs(g-M)<1e-6)return n(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t}},{"./identity":185}],188:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=e[6],u=e[7],f=e[8],h=e[9],d=e[10],p=e[11],m=e[12],v=e[13],g=e[14],y=e[15],b=r[0],x=r[1],_=r[2],w=r[3];return t[0]=b*n+x*s+_*f+w*m,t[1]=b*i+x*l+_*h+w*v,t[2]=b*a+x*c+_*d+w*g,t[3]=b*o+x*u+_*p+w*y,b=r[4],x=r[5],_=r[6],w=r[7],t[4]=b*n+x*s+_*f+w*m,t[5]=b*i+x*l+_*h+w*v,t[6]=b*a+x*c+_*d+w*g,t[7]=b*o+x*u+_*p+w*y,b=r[8],x=r[9],_=r[10],w=r[11],t[8]=b*n+x*s+_*f+w*m,t[9]=b*i+x*l+_*h+w*v,t[10]=b*a+x*c+_*d+w*g,t[11]=b*o+x*u+_*p+w*y,b=r[12],x=r[13],_=r[14],w=r[15],t[12]=b*n+x*s+_*f+w*m,t[13]=b*i+x*l+_*h+w*v,t[14]=b*a+x*c+_*d+w*g,t[15]=b*o+x*u+_*p+w*y,t}},{}],189:[function(t,e,r){e.exports=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t}},{}],190:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w,M,k,A,T,E,S=n[0],L=n[1],C=n[2],P=Math.sqrt(S*S+L*L+C*C);if(Math.abs(P)<1e-6)return null;S*=P=1/P,L*=P,C*=P,i=Math.sin(r),a=Math.cos(r),o=1-a,s=e[0],l=e[1],c=e[2],u=e[3],f=e[4],h=e[5],d=e[6],p=e[7],m=e[8],v=e[9],g=e[10],y=e[11],b=S*S*o+a,x=L*S*o+C*i,_=C*S*o-L*i,w=S*L*o-C*i,M=L*L*o+a,k=C*L*o+S*i,A=S*C*o+L*i,T=L*C*o-S*i,E=C*C*o+a,t[0]=s*b+f*x+m*_,t[1]=l*b+h*x+v*_,t[2]=c*b+d*x+g*_,t[3]=u*b+p*x+y*_,t[4]=s*w+f*M+m*k,t[5]=l*w+h*M+v*k,t[6]=c*w+d*M+g*k,t[7]=u*w+p*M+y*k,t[8]=s*A+f*T+m*E,t[9]=l*A+h*T+v*E,t[10]=c*A+d*T+g*E,t[11]=u*A+p*T+y*E,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t}},{}],191:[function(t,e,r){e.exports=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t}},{}],192:[function(t,e,r){e.exports=function(t,e,r){var 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n=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var r in t)Object.prototype.hasOwnProperty.call(t,r)&&(e[r]=t[r]);return e.default=t,e}(r(0));function i(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=r[0],u=r[1],f=r[2],h=r[3],d=r[4],p=r[5];return t[0]=n*c+a*u,t[1]=i*c+o*u,t[2]=n*f+a*h,t[3]=i*f+o*h,t[4]=n*d+a*p+s,t[5]=i*d+o*p+l,t}function a(t,e,r){return t[0]=e[0]-r[0],t[1]=e[1]-r[1],t[2]=e[2]-r[2],t[3]=e[3]-r[3],t[4]=e[4]-r[4],t[5]=e[5]-r[5],t}e.mul=i,e.sub=a},function(t,e,r){"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.sub=e.mul=void 0,e.create=function(){var t=new n.ARRAY_TYPE(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.clone=function(t){var e=new n.ARRAY_TYPE(16);return 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r=e[1],n=e[2],i=e[3],a=e[6],o=e[7],s=e[11];t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=r,t[6]=e[9],t[7]=e[13],t[8]=n,t[9]=a,t[11]=e[14],t[12]=i,t[13]=o,t[14]=s}else t[0]=e[0],t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=e[1],t[5]=e[5],t[6]=e[9],t[7]=e[13],t[8]=e[2],t[9]=e[6],t[10]=e[10],t[11]=e[14],t[12]=e[3],t[13]=e[7],t[14]=e[11],t[15]=e[15];return t},e.invert=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t},e.adjoint=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15];return t[0]=s*(h*g-d*v)-f*(l*g-c*v)+m*(l*d-c*h),t[1]=-(n*(h*g-d*v)-f*(i*g-a*v)+m*(i*d-a*h)),t[2]=n*(l*g-c*v)-s*(i*g-a*v)+m*(i*c-a*l),t[3]=-(n*(l*d-c*h)-s*(i*d-a*h)+f*(i*c-a*l)),t[4]=-(o*(h*g-d*v)-u*(l*g-c*v)+p*(l*d-c*h)),t[5]=r*(h*g-d*v)-u*(i*g-a*v)+p*(i*d-a*h),t[6]=-(r*(l*g-c*v)-o*(i*g-a*v)+p*(i*c-a*l)),t[7]=r*(l*d-c*h)-o*(i*d-a*h)+u*(i*c-a*l),t[8]=o*(f*g-d*m)-u*(s*g-c*m)+p*(s*d-c*f),t[9]=-(r*(f*g-d*m)-u*(n*g-a*m)+p*(n*d-a*f)),t[10]=r*(s*g-c*m)-o*(n*g-a*m)+p*(n*c-a*s),t[11]=-(r*(s*d-c*f)-o*(n*d-a*f)+u*(n*c-a*s)),t[12]=-(o*(f*v-h*m)-u*(s*v-l*m)+p*(s*h-l*f)),t[13]=r*(f*v-h*m)-u*(n*v-i*m)+p*(n*h-i*f),t[14]=-(r*(s*v-l*m)-o*(n*v-i*m)+p*(n*l-i*s)),t[15]=r*(s*h-l*f)-o*(n*h-i*f)+u*(n*l-i*s),t},e.determinant=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)},e.multiply=i,e.translate=function(t,e,r){var n=r[0],i=r[1],a=r[2],o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0;e===t?(t[12]=e[0]*n+e[4]*i+e[8]*a+e[12],t[13]=e[1]*n+e[5]*i+e[9]*a+e[13],t[14]=e[2]*n+e[6]*i+e[10]*a+e[14],t[15]=e[3]*n+e[7]*i+e[11]*a+e[15]):(o=e[0],s=e[1],l=e[2],c=e[3],u=e[4],f=e[5],h=e[6],d=e[7],p=e[8],m=e[9],v=e[10],g=e[11],t[0]=o,t[1]=s,t[2]=l,t[3]=c,t[4]=u,t[5]=f,t[6]=h,t[7]=d,t[8]=p,t[9]=m,t[10]=v,t[11]=g,t[12]=o*n+u*i+p*a+e[12],t[13]=s*n+f*i+m*a+e[13],t[14]=l*n+h*i+v*a+e[14],t[15]=c*n+d*i+g*a+e[15]);return t},e.scale=function(t,e,r){var n=r[0],i=r[1],a=r[2];return t[0]=e[0]*n,t[1]=e[1]*n,t[2]=e[2]*n,t[3]=e[3]*n,t[4]=e[4]*i,t[5]=e[5]*i,t[6]=e[6]*i,t[7]=e[7]*i,t[8]=e[8]*a,t[9]=e[9]*a,t[10]=e[10]*a,t[11]=e[11]*a,t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15],t},e.rotate=function(t,e,r,i){var a=i[0],o=i[1],s=i[2],l=Math.sqrt(a*a+o*o+s*s),c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0,y=void 0,b=void 0,x=void 0,_=void 0,w=void 0,M=void 0,k=void 0,A=void 0,T=void 0,E=void 0,S=void 0,L=void 0,C=void 0,P=void 0,z=void 0;if(Math.abs(l)<n.EPSILON)return null;a*=l=1/l,o*=l,s*=l,c=Math.sin(r),u=Math.cos(r),f=1-u,h=e[0],d=e[1],p=e[2],m=e[3],v=e[4],g=e[5],y=e[6],b=e[7],x=e[8],_=e[9],w=e[10],M=e[11],k=a*a*f+u,A=o*a*f+s*c,T=s*a*f-o*c,E=a*o*f-s*c,S=o*o*f+u,L=s*o*f+a*c,C=a*s*f+o*c,P=o*s*f-a*c,z=s*s*f+u,t[0]=h*k+v*A+x*T,t[1]=d*k+g*A+_*T,t[2]=p*k+y*A+w*T,t[3]=m*k+b*A+M*T,t[4]=h*E+v*S+x*L,t[5]=d*E+g*S+_*L,t[6]=p*E+y*S+w*L,t[7]=m*E+b*S+M*L,t[8]=h*C+v*P+x*z,t[9]=d*C+g*P+_*z,t[10]=p*C+y*P+w*z,t[11]=m*C+b*P+M*z,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t},e.rotateX=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t},e.rotateY=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[4]=e[4],t[5]=e[5],t[6]=e[6],t[7]=e[7],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i-c*n,t[1]=o*i-u*n,t[2]=s*i-f*n,t[3]=l*i-h*n,t[8]=a*n+c*i,t[9]=o*n+u*i,t[10]=s*n+f*i,t[11]=l*n+h*i,t},e.rotateZ=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[4],u=e[5],f=e[6],h=e[7];e!==t&&(t[8]=e[8],t[9]=e[9],t[10]=e[10],t[11]=e[11],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i+c*n,t[1]=o*i+u*n,t[2]=s*i+f*n,t[3]=l*i+h*n,t[4]=c*i-a*n,t[5]=u*i-o*n,t[6]=f*i-s*n,t[7]=h*i-l*n,t},e.fromTranslation=function(t,e){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=e[0],t[13]=e[1],t[14]=e[2],t[15]=1,t},e.fromScaling=function(t,e){return t[0]=e[0],t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=e[1],t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=e[2],t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotation=function(t,e,r){var i=r[0],a=r[1],o=r[2],s=Math.sqrt(i*i+a*a+o*o),l=void 0,c=void 0,u=void 0;if(Math.abs(s)<n.EPSILON)return null;return i*=s=1/s,a*=s,o*=s,l=Math.sin(e),c=Math.cos(e),u=1-c,t[0]=i*i*u+c,t[1]=a*i*u+o*l,t[2]=o*i*u-a*l,t[3]=0,t[4]=i*a*u-o*l,t[5]=a*a*u+c,t[6]=o*a*u+i*l,t[7]=0,t[8]=i*o*u+a*l,t[9]=a*o*u-i*l,t[10]=o*o*u+c,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromXRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=n,t[6]=r,t[7]=0,t[8]=0,t[9]=-r,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromYRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=0,t[2]=-r,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=r,t[9]=0,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromZRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=r,t[2]=0,t[3]=0,t[4]=-r,t[5]=n,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotationTranslation=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.getTranslation=function(t,e){return t[0]=e[12],t[1]=e[13],t[2]=e[14],t},e.getScaling=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[4],o=e[5],s=e[6],l=e[8],c=e[9],u=e[10];return t[0]=Math.sqrt(r*r+n*n+i*i),t[1]=Math.sqrt(a*a+o*o+s*s),t[2]=Math.sqrt(l*l+c*c+u*u),t},e.getRotation=function(t,e){var r=e[0]+e[5]+e[10],n=0;r>0?(n=2*Math.sqrt(r+1),t[3]=.25*n,t[0]=(e[6]-e[9])/n,t[1]=(e[8]-e[2])/n,t[2]=(e[1]-e[4])/n):e[0]>e[5]&e[0]>e[10]?(n=2*Math.sqrt(1+e[0]-e[5]-e[10]),t[3]=(e[6]-e[9])/n,t[0]=.25*n,t[1]=(e[1]+e[4])/n,t[2]=(e[8]+e[2])/n):e[5]>e[10]?(n=2*Math.sqrt(1+e[5]-e[0]-e[10]),t[3]=(e[8]-e[2])/n,t[0]=(e[1]+e[4])/n,t[1]=.25*n,t[2]=(e[6]+e[9])/n):(n=2*Math.sqrt(1+e[10]-e[0]-e[5]),t[3]=(e[1]-e[4])/n,t[0]=(e[8]+e[2])/n,t[1]=(e[6]+e[9])/n,t[2]=.25*n);return t},e.fromRotationTranslationScale=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=e[3],l=i+i,c=a+a,u=o+o,f=i*l,h=i*c,d=i*u,p=a*c,m=a*u,v=o*u,g=s*l,y=s*c,b=s*u,x=n[0],_=n[1],w=n[2];return t[0]=(1-(p+v))*x,t[1]=(h+b)*x,t[2]=(d-y)*x,t[3]=0,t[4]=(h-b)*_,t[5]=(1-(f+v))*_,t[6]=(m+g)*_,t[7]=0,t[8]=(d+y)*w,t[9]=(m-g)*w,t[10]=(1-(f+p))*w,t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.fromRotationTranslationScaleOrigin=function(t,e,r,n,i){var a=e[0],o=e[1],s=e[2],l=e[3],c=a+a,u=o+o,f=s+s,h=a*c,d=a*u,p=a*f,m=o*u,v=o*f,g=s*f,y=l*c,b=l*u,x=l*f,_=n[0],w=n[1],M=n[2],k=i[0],A=i[1],T=i[2];return t[0]=(1-(m+g))*_,t[1]=(d+x)*_,t[2]=(p-b)*_,t[3]=0,t[4]=(d-x)*w,t[5]=(1-(h+g))*w,t[6]=(v+y)*w,t[7]=0,t[8]=(p+b)*M,t[9]=(v-y)*M,t[10]=(1-(h+m))*M,t[11]=0,t[12]=r[0]+k-(t[0]*k+t[4]*A+t[8]*T),t[13]=r[1]+A-(t[1]*k+t[5]*A+t[9]*T),t[14]=r[2]+T-(t[2]*k+t[6]*A+t[10]*T),t[15]=1,t},e.fromQuat=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.frustum=function(t,e,r,n,i,a,o){var s=1/(r-e),l=1/(i-n),c=1/(a-o);return t[0]=2*a*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=2*a*l,t[6]=0,t[7]=0,t[8]=(r+e)*s,t[9]=(i+n)*l,t[10]=(o+a)*c,t[11]=-1,t[12]=0,t[13]=0,t[14]=o*a*2*c,t[15]=0,t},e.perspective=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t},e.perspectiveFromFieldOfView=function(t,e,r,n){var i=Math.tan(e.upDegrees*Math.PI/180),a=Math.tan(e.downDegrees*Math.PI/180),o=Math.tan(e.leftDegrees*Math.PI/180),s=Math.tan(e.rightDegrees*Math.PI/180),l=2/(o+s),c=2/(i+a);return t[0]=l,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=c,t[6]=0,t[7]=0,t[8]=-(o-s)*l*.5,t[9]=(i-a)*c*.5,t[10]=n/(r-n),t[11]=-1,t[12]=0,t[13]=0,t[14]=n*r/(r-n),t[15]=0,t},e.ortho=function(t,e,r,n,i,a,o){var s=1/(e-r),l=1/(n-i),c=1/(a-o);return t[0]=-2*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=-2*l,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=2*c,t[11]=0,t[12]=(e+r)*s,t[13]=(i+n)*l,t[14]=(o+a)*c,t[15]=1,t},e.lookAt=function(t,e,r,i){var a=void 0,o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<n.EPSILON&&Math.abs(v-w)<n.EPSILON&&Math.abs(g-M)<n.EPSILON)return mat4.identity(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t},e.targetTo=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=n[0],l=n[1],c=n[2],u=i-r[0],f=a-r[1],h=o-r[2],d=u*u+f*f+h*h;d>0&&(d=1/Math.sqrt(d),u*=d,f*=d,h*=d);var p=l*h-c*f,m=c*u-s*h,v=s*f-l*u;return t[0]=p,t[1]=m,t[2]=v,t[3]=0,t[4]=f*v-h*m,t[5]=h*p-u*v,t[6]=u*m-f*p,t[7]=0,t[8]=u,t[9]=f,t[10]=h,t[11]=0,t[12]=i,t[13]=a,t[14]=o,t[15]=1,t},e.str=function(t){return"mat4("+t[0]+", "+t[1]+", "+t[2]+", "+t[3]+", "+t[4]+", "+t[5]+", "+t[6]+", "+t[7]+", "+t[8]+", "+t[9]+", "+t[10]+", "+t[11]+", "+t[12]+", "+t[13]+", "+t[14]+", "+t[15]+")"},e.frob=function(t){return Math.sqrt(Math.pow(t[0],2)+Math.pow(t[1],2)+Math.pow(t[2],2)+Math.pow(t[3],2)+Math.pow(t[4],2)+Math.pow(t[5],2)+Math.pow(t[6],2)+Math.pow(t[7],2)+Math.pow(t[8],2)+Math.pow(t[9],2)+Math.pow(t[10],2)+Math.pow(t[11],2)+Math.pow(t[12],2)+Math.pow(t[13],2)+Math.pow(t[14],2)+Math.pow(t[15],2))},e.add=function(t,e,r){return t[0]=e[0]+r[0],t[1]=e[1]+r[1],t[2]=e[2]+r[2],t[3]=e[3]+r[3],t[4]=e[4]+r[4],t[5]=e[5]+r[5],t[6]=e[6]+r[6],t[7]=e[7]+r[7],t[8]=e[8]+r[8],t[9]=e[9]+r[9],t[10]=e[10]+r[10],t[11]=e[11]+r[11],t[12]=e[12]+r[12],t[13]=e[13]+r[13],t[14]=e[14]+r[14],t[15]=e[15]+r[15],t},e.subtract=a,e.multiplyScalar=function(t,e,r){return t[0]=e[0]*r,t[1]=e[1]*r,t[2]=e[2]*r,t[3]=e[3]*r,t[4]=e[4]*r,t[5]=e[5]*r,t[6]=e[6]*r,t[7]=e[7]*r,t[8]=e[8]*r,t[9]=e[9]*r,t[10]=e[10]*r,t[11]=e[11]*r,t[12]=e[12]*r,t[13]=e[13]*r,t[14]=e[14]*r,t[15]=e[15]*r,t},e.multiplyScalarAndAdd=function(t,e,r,n){return t[0]=e[0]+r[0]*n,t[1]=e[1]+r[1]*n,t[2]=e[2]+r[2]*n,t[3]=e[3]+r[3]*n,t[4]=e[4]+r[4]*n,t[5]=e[5]+r[5]*n,t[6]=e[6]+r[6]*n,t[7]=e[7]+r[7]*n,t[8]=e[8]+r[8]*n,t[9]=e[9]+r[9]*n,t[10]=e[10]+r[10]*n,t[11]=e[11]+r[11]*n,t[12]=e[12]+r[12]*n,t[13]=e[13]+r[13]*n,t[14]=e[14]+r[14]*n,t[15]=e[15]+r[15]*n,t},e.exactEquals=function(t,e){return t[0]===e[0]&&t[1]===e[1]&&t[2]===e[2]&&t[3]===e[3]&&t[4]===e[4]&&t[5]===e[5]&&t[6]===e[6]&&t[7]===e[7]&&t[8]===e[8]&&t[9]===e[9]&&t[10]===e[10]&&t[11]===e[11]&&t[12]===e[12]&&t[13]===e[13]&&t[14]===e[14]&&t[15]===e[15]},e.equals=function(t,e){var r=t[0],i=t[1],a=t[2],o=t[3],s=t[4],l=t[5],c=t[6],u=t[7],f=t[8],h=t[9],d=t[10],p=t[11],m=t[12],v=t[13],g=t[14],y=t[15],b=e[0],x=e[1],_=e[2],w=e[3],M=e[4],k=e[5],A=e[6],T=e[7],E=e[8],S=e[9],L=e[10],C=e[11],P=e[12],z=e[13],O=e[14],D=e[15];return Math.abs(r-b)<=n.EPSILON*Math.max(1,Math.abs(r),Math.abs(b))&&Math.abs(i-x)<=n.EPSILON*Math.max(1,Math.abs(i),Math.abs(x))&&Math.abs(a-_)<=n.EPSILON*Math.max(1,Math.abs(a),Math.abs(_))&&Math.abs(o-w)<=n.EPSILON*Math.max(1,Math.abs(o),Math.abs(w))&&Math.abs(s-M)<=n.EPSILON*Math.max(1,Math.abs(s),Math.abs(M))&&Math.abs(l-k)<=n.EPSILON*Math.max(1,Math.abs(l),Math.abs(k))&&Math.abs(c-A)<=n.EPSILON*Math.max(1,Math.abs(c),Math.abs(A))&&Math.abs(u-T)<=n.EPSILON*Math.max(1,Math.abs(u),Math.abs(T))&&Math.abs(f-E)<=n.EPSILON*Math.max(1,Math.abs(f),Math.abs(E))&&Math.abs(h-S)<=n.EPSILON*Math.max(1,Math.abs(h),Math.abs(S))&&Math.abs(d-L)<=n.EPSILON*Math.max(1,Math.abs(d),Math.abs(L))&&Math.abs(p-C)<=n.EPSILON*Math.max(1,Math.abs(p),Math.abs(C))&&Math.abs(m-P)<=n.EPSILON*Math.max(1,Math.abs(m),Math.abs(P))&&Math.abs(v-z)<=n.EPSILON*Math.max(1,Math.abs(v),Math.abs(z))&&Math.abs(g-O)<=n.EPSILON*Math.max(1,Math.abs(g),Math.abs(O))&&Math.abs(y-D)<=n.EPSILON*Math.max(1,Math.abs(y),Math.abs(D))};var 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f_normal\n           , f_lightDirection\n           , f_eyeDirection\n           , f_data;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(f_normal);\n  vec3 L = normalize(f_lightDirection);\n  vec3 V = normalize(f_eyeDirection);\n  \n  if(!gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = cookTorranceSpecular(L, V, N, roughness, fresnel);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  vec4 surfaceColor = f_color * texture2D(texture, f_uv);\n  vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular,  1.0);\n\n  gl_FragColor = litColor * opacity;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\n\nuniform mat4 model, view, projection;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_color = color;\n  f_data  = position;\n  f_uv    = uv;\n}"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 clipBounds[2];\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\nattribute float pointSize;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position = projection * view * model * vec4(position, 1.0);\n  }\n  gl_PointSize = pointSize;\n  f_color = color;\n  f_uv = uv;\n}"]),c=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  vec2 pointR = gl_PointCoord.xy - vec2(0.5,0.5);\n  if(dot(pointR, pointR) > 0.25) {\n    discard;\n  }\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_id        = id;\n  f_position  = position;\n}"]),f=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3  clipBounds[2];\nuniform float pickId;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(f_position, clipBounds[0])) || \n     any(greaterThan(f_position, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId, f_id.xyz);\n}"]),h=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3  position;\nattribute float pointSize;\nattribute vec4  id;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position  = projection * view * model * vec4(position, 1.0);\n    gl_PointSize = pointSize;\n  }\n  f_id         = id;\n  f_position   = position;\n}"]),d=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n}"]),p=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 contourColor;\n\nvoid main() {\n  gl_FragColor = vec4(contourColor,1);\n}\n"]);r.meshShader={vertex:i,fragment:a,attributes:[{name:"position",type:"vec3"},{name:"normal",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.wireShader={vertex:o,fragment:s,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.pointShader={vertex:l,fragment:c,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"},{name:"pointSize",type:"float"}]},r.pickShader={vertex:u,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"id",type:"vec4"}]},r.pointPickShader={vertex:h,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"pointSize",type:"float"},{name:"id",type:"vec4"}]},r.contourShader={vertex:d,fragment:p,attributes:[{name:"position",type:"vec3"}]}},{glslify:253}],201:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("normals"),l=t("gl-mat4/multiply"),c=t("gl-mat4/invert"),u=t("ndarray"),f=t("colormap"),h=t("simplicial-complex-contour"),d=t("typedarray-pool"),p=t("./lib/shaders"),m=t("./lib/closest-point"),v=p.meshShader,g=p.wireShader,y=p.pointShader,b=p.pickShader,x=p.pointPickShader,_=p.contourShader,w=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function M(t,e,r,n,i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,M,k,A,T,E){this.gl=t,this.cells=[],this.positions=[],this.intensity=[],this.texture=e,this.dirty=!0,this.triShader=r,this.lineShader=n,this.pointShader=i,this.pickShader=a,this.pointPickShader=o,this.contourShader=s,this.trianglePositions=l,this.triangleColors=u,this.triangleNormals=h,this.triangleUVs=f,this.triangleIds=c,this.triangleVAO=d,this.triangleCount=0,this.lineWidth=1,this.edgePositions=p,this.edgeColors=v,this.edgeUVs=g,this.edgeIds=m,this.edgeVAO=y,this.edgeCount=0,this.pointPositions=b,this.pointColors=_,this.pointUVs=M,this.pointSizes=k,this.pointIds=x,this.pointVAO=A,this.pointCount=0,this.contourLineWidth=1,this.contourPositions=T,this.contourVAO=E,this.contourCount=0,this.contourColor=[0,0,0],this.contourEnable=!0,this.pickId=1,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.lightPosition=[1e5,1e5,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.opacity=1,this._model=w,this._view=w,this._projection=w,this._resolution=[1,1]}var k=M.prototype;function A(t){var e=n(t,y.vertex,y.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.pointSize.location=4,e}function T(t){var e=n(t,b.vertex,b.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e}function E(t){var e=n(t,x.vertex,x.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e.attributes.pointSize.location=4,e}function S(t){var e=n(t,_.vertex,_.fragment);return e.attributes.position.location=0,e}k.isOpaque=function(){return this.opacity>=1},k.isTransparent=function(){return this.opacity<1},k.pickSlots=1,k.setPickBase=function(t){this.pickId=t},k.highlight=function(t){if(t&&this.contourEnable){for(var e=h(this.cells,this.intensity,t.intensity),r=e.cells,n=e.vertexIds,i=e.vertexWeights,a=r.length,o=d.mallocFloat32(6*a),s=0,l=0;l<a;++l)for(var c=r[l],u=0;u<2;++u){var f=c[0];2===c.length&&(f=c[u]);for(var p=n[f][0],m=n[f][1],v=i[f],g=1-v,y=this.positions[p],b=this.positions[m],x=0;x<3;++x)o[s++]=v*y[x]+g*b[x]}this.contourCount=s/3|0,this.contourPositions.update(o.subarray(0,s)),d.free(o)}else this.contourCount=0},k.update=function(t){t=t||{};var e=this.gl;this.dirty=!0,"contourEnable"in t&&(this.contourEnable=t.contourEnable),"contourColor"in t&&(this.contourColor=t.contourColor),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"lightPosition"in t&&(this.lightPosition=t.lightPosition),"opacity"in t&&(this.opacity=t.opacity),"ambient"in t&&(this.ambientLight=t.ambient),"diffuse"in t&&(this.diffuseLight=t.diffuse),"specular"in t&&(this.specularLight=t.specular),"roughness"in t&&(this.roughness=t.roughness),"fresnel"in t&&(this.fresnel=t.fresnel),t.texture?(this.texture.dispose(),this.texture=o(e,t.texture)):t.colormap&&(this.texture.shape=[256,256],this.texture.minFilter=e.LINEAR_MIPMAP_LINEAR,this.texture.magFilter=e.LINEAR,this.texture.setPixels(function(t){for(var e=f({colormap:t,nshades:256,format:"rgba"}),r=new Uint8Array(1024),n=0;n<256;++n){for(var i=e[n],a=0;a<3;++a)r[4*n+a]=i[a];r[4*n+3]=255*i[3]}return u(r,[256,256,4],[4,0,1])}(t.colormap)),this.texture.generateMipmap());var r=t.cells,n=t.positions;if(n&&r){var i=[],a=[],l=[],c=[],h=[],d=[],p=[],m=[],v=[],g=[],y=[],b=[],x=[],_=[];this.cells=r,this.positions=n;var w=t.vertexNormals,M=t.cellNormals,k=void 0===t.vertexNormalsEpsilon?1e-6:t.vertexNormalsEpsilon,A=void 0===t.faceNormalsEpsilon?1e-6:t.faceNormalsEpsilon;t.useFacetNormals&&!M&&(M=s.faceNormals(r,n,A)),M||w||(w=s.vertexNormals(r,n,k));var T=t.vertexColors,E=t.cellColors,S=t.meshColor||[1,1,1,1],L=t.vertexUVs,C=t.vertexIntensity,P=t.cellUVs,z=t.cellIntensity,O=1/0,D=-1/0;if(!L&&!P)if(C)if(t.vertexIntensityBounds)O=+t.vertexIntensityBounds[0],D=+t.vertexIntensityBounds[1];else for(var I=0;I<C.length;++I){var R=C[I];O=Math.min(O,R),D=Math.max(D,R)}else if(z)for(I=0;I<z.length;++I){R=z[I];O=Math.min(O,R),D=Math.max(D,R)}else for(I=0;I<n.length;++I){R=n[I][2];O=Math.min(O,R),D=Math.max(D,R)}this.intensity=C||(z?function(t,e,r){for(var n=new Array(e),i=0;i<e;++i)n[i]=0;var a=t.length;for(i=0;i<a;++i)for(var o=t[i],s=0;s<o.length;++s)n[o[s]]=r[i];return n}(r,n.length,z):function(t){for(var e=t.length,r=new Array(e),n=0;n<e;++n)r[n]=t[n][2];return r}(n));var N=t.pointSizes,F=t.pointSize||1;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(I=0;I<n.length;++I)for(var j=n[I],B=0;B<3;++B)!isNaN(j[B])&&isFinite(j[B])&&(this.bounds[0][B]=Math.min(this.bounds[0][B],j[B]),this.bounds[1][B]=Math.max(this.bounds[1][B],j[B]));var U=0,V=0,q=0;t:for(I=0;I<r.length;++I){var H=r[I];switch(H.length){case 1:for(j=n[Y=H[0]],B=0;B<3;++B)if(isNaN(j[B])||!isFinite(j[B]))continue t;g.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?y.push(W[0],W[1],W[2],1):y.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],b.push(X[0],X[1]),N?x.push(N[Y]):x.push(F),_.push(I),q+=1;break;case 2:for(B=0;B<2;++B){j=n[Y=H[B]];for(var G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t}for(B=0;B<2;++B){j=n[Y=H[B]];d.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?p.push(W[0],W[1],W[2],1):p.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],m.push(X[0],X[1]),v.push(I)}V+=1;break;case 3:for(B=0;B<3;++B)for(j=n[Y=H[B]],G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t;for(B=0;B<3;++B){var Y,W,X,Z;j=n[Y=H[B]];i.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?a.push(W[0],W[1],W[2],1):a.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],c.push(X[0],X[1]),Z=w?w[Y]:M[I],l.push(Z[0],Z[1],Z[2]),h.push(I)}U+=1}}this.pointCount=q,this.edgeCount=V,this.triangleCount=U,this.pointPositions.update(g),this.pointColors.update(y),this.pointUVs.update(b),this.pointSizes.update(x),this.pointIds.update(new Uint32Array(_)),this.edgePositions.update(d),this.edgeColors.update(p),this.edgeUVs.update(m),this.edgeIds.update(new Uint32Array(v)),this.trianglePositions.update(i),this.triangleColors.update(a),this.triangleUVs.update(c),this.triangleNormals.update(l),this.triangleIds.update(new Uint32Array(h))}},k.drawTransparent=k.draw=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);var s={model:r,view:n,projection:i,clipBounds:a,kambient:this.ambientLight,kdiffuse:this.diffuseLight,kspecular:this.specularLight,roughness:this.roughness,fresnel:this.fresnel,eyePosition:[0,0,0],lightPosition:[0,0,0],opacity:this.opacity,contourColor:this.contourColor,texture:0};this.texture.bind(0);var u=new Array(16);l(u,s.view,s.model),l(u,s.projection,u),c(u,u);for(o=0;o<3;++o)s.eyePosition[o]=u[12+o]/u[15];var f,h=u[15];for(o=0;o<3;++o)h+=this.lightPosition[o]*u[4*o+3];for(o=0;o<3;++o){for(var d=u[12+o],p=0;p<3;++p)d+=u[4*p+o]*this.lightPosition[p];s.lightPosition[o]=d/h}this.triangleCount>0&&((f=this.triShader).bind(),f.uniforms=s,this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind());this.edgeCount>0&&this.lineWidth>0&&((f=this.lineShader).bind(),f.uniforms=s,this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind());this.pointCount>0&&((f=this.pointShader).bind(),f.uniforms=s,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind());this.contourEnable&&this.contourCount>0&&this.contourLineWidth>0&&((f=this.contourShader).bind(),f.uniforms=s,this.contourVAO.bind(),e.drawArrays(e.LINES,0,this.contourCount),this.contourVAO.unbind())},k.drawPick=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);this._model=[].slice.call(r),this._view=[].slice.call(n),this._projection=[].slice.call(i),this._resolution=[e.drawingBufferWidth,e.drawingBufferHeight];var s,l={model:r,view:n,projection:i,clipBounds:a,pickId:this.pickId/255};((s=this.pickShader).bind(),s.uniforms=l,this.triangleCount>0&&(this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()),this.edgeCount>0&&(this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind()),this.pointCount>0)&&((s=this.pointPickShader).bind(),s.uniforms=l,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind())},k.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;for(var e=t.value[0]+256*t.value[1]+65536*t.value[2],r=this.cells[e],n=this.positions,i=new Array(r.length),a=0;a<r.length;++a)i[a]=n[r[a]];var o=m(i,[t.coord[0],this._resolution[1]-t.coord[1]],this._model,this._view,this._projection,this._resolution);if(!o)return null;var s=o[2],l=0;for(a=0;a<r.length;++a)l+=s[a]*this.intensity[r[a]];return{position:o[1],index:r[o[0]],cell:r,cellId:e,intensity:l,dataCoordinate:this.positions[r[o[0]]]}},k.dispose=function(){this.texture.dispose(),this.triShader.dispose(),this.lineShader.dispose(),this.pointShader.dispose(),this.pickShader.dispose(),this.pointPickShader.dispose(),this.triangleVAO.dispose(),this.trianglePositions.dispose(),this.triangleColors.dispose(),this.triangleUVs.dispose(),this.triangleNormals.dispose(),this.triangleIds.dispose(),this.edgeVAO.dispose(),this.edgePositions.dispose(),this.edgeColors.dispose(),this.edgeUVs.dispose(),this.edgeIds.dispose(),this.pointVAO.dispose(),this.pointPositions.dispose(),this.pointColors.dispose(),this.pointUVs.dispose(),this.pointSizes.dispose(),this.pointIds.dispose(),this.contourVAO.dispose(),this.contourPositions.dispose(),this.contourShader.dispose()},e.exports=function(t,e){1===arguments.length&&(t=(e=t).gl);var r=function(t){var e=n(t,v.vertex,v.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.normal.location=4,e}(t),s=function(t){var e=n(t,g.vertex,g.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e}(t),l=A(t),c=T(t),f=E(t),h=S(t),d=o(t,u(new Uint8Array([255,255,255,255]),[1,1,4]));d.generateMipmap(),d.minFilter=t.LINEAR_MIPMAP_LINEAR,d.magFilter=t.LINEAR;var p=i(t),m=i(t),y=i(t),b=i(t),x=i(t),_=a(t,[{buffer:p,type:t.FLOAT,size:3},{buffer:x,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:m,type:t.FLOAT,size:4},{buffer:y,type:t.FLOAT,size:2},{buffer:b,type:t.FLOAT,size:3}]),w=i(t),k=i(t),L=i(t),C=i(t),P=a(t,[{buffer:w,type:t.FLOAT,size:3},{buffer:C,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:k,type:t.FLOAT,size:4},{buffer:L,type:t.FLOAT,size:2}]),z=i(t),O=i(t),D=i(t),I=i(t),R=i(t),N=a(t,[{buffer:z,type:t.FLOAT,size:3},{buffer:R,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:O,type:t.FLOAT,size:4},{buffer:D,type:t.FLOAT,size:2},{buffer:I,type:t.FLOAT,size:1}]),F=i(t),j=new M(t,d,r,s,l,c,f,h,p,x,m,y,b,_,w,C,k,L,P,z,R,O,D,I,N,F,a(t,[{buffer:F,type:t.FLOAT,size:3}]));return j.update(e),j}},{"./lib/closest-point":199,"./lib/shaders":200,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-shader":220,"gl-texture2d":233,"gl-vao":237,ndarray:439,normals:442,"simplicial-complex-contour":504,"typedarray-pool":534}],202:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[0,0,0,1,1,0,1,1]),s=i(e,a.boxVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawBox=(s=[0,0],l=[0,0],function(t,e,r,n,i){var a=this.plot,o=this.shader,c=a.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,o.uniforms.lo=s,o.uniforms.hi=l,o.uniforms.color=i,c.drawArrays(c.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],203:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,o.gridVert,o.gridFrag),l=i(e,o.tickVert,o.gridFrag);return new s(t,r,a,l)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("binary-search-bounds"),o=t("./shaders");function s(t,e,r,n){this.plot=t,this.vbo=e,this.shader=r,this.tickShader=n,this.ticks=[[],[]]}function l(t,e){return t-e}var c,u,f,h,d,p=s.prototype;p.draw=(c=[0,0],u=[0,0],f=[0,0],function(){for(var t=this.plot,e=this.vbo,r=this.shader,n=this.ticks,i=t.gl,a=t._tickBounds,o=t.dataBox,s=t.viewBox,l=t.gridLineWidth,h=t.gridLineColor,d=t.gridLineEnable,p=t.pixelRatio,m=0;m<2;++m){var v=a[m],g=a[m+2]-v,y=.5*(o[m+2]+o[m]),b=o[m+2]-o[m];u[m]=2*g/b,c[m]=2*(v-y)/b}r.bind(),e.bind(),r.attributes.dataCoord.pointer(),r.uniforms.dataShift=c,r.uniforms.dataScale=u;var x=0;for(m=0;m<2;++m){f[0]=f[1]=0,f[m]=1,r.uniforms.dataAxis=f,r.uniforms.lineWidth=l[m]/(s[m+2]-s[m])*p,r.uniforms.color=h[m];var _=6*n[m].length;d[m]&&_&&i.drawArrays(i.TRIANGLES,x,_),x+=_}}),p.drawTickMarks=function(){var t=[0,0],e=[0,0],r=[1,0],n=[0,1],i=[0,0],o=[0,0];return function(){for(var s=this.plot,c=this.vbo,u=this.tickShader,f=this.ticks,h=s.gl,d=s._tickBounds,p=s.dataBox,m=s.viewBox,v=s.pixelRatio,g=s.screenBox,y=g[2]-g[0],b=g[3]-g[1],x=m[2]-m[0],_=m[3]-m[1],w=0;w<2;++w){var M=d[w],k=d[w+2]-M,A=.5*(p[w+2]+p[w]),T=p[w+2]-p[w];e[w]=2*k/T,t[w]=2*(M-A)/T}e[0]*=x/y,t[0]*=x/y,e[1]*=_/b,t[1]*=_/b,u.bind(),c.bind(),u.attributes.dataCoord.pointer();var E=u.uniforms;E.dataShift=t,E.dataScale=e;var S=s.tickMarkLength,L=s.tickMarkWidth,C=s.tickMarkColor,P=6*f[0].length,z=Math.min(a.ge(f[0],(p[0]-d[0])/(d[2]-d[0]),l),f[0].length),O=Math.min(a.gt(f[0],(p[2]-d[0])/(d[2]-d[0]),l),f[0].length),D=0+6*z,I=6*Math.max(0,O-z),R=Math.min(a.ge(f[1],(p[1]-d[1])/(d[3]-d[1]),l),f[1].length),N=Math.min(a.gt(f[1],(p[3]-d[1])/(d[3]-d[1]),l),f[1].length),F=P+6*R,j=6*Math.max(0,N-R);i[0]=2*(m[0]-S[1])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[1]*v/y,o[1]=L[1]*v/b,j&&(E.color=C[1],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[1]-S[0])/b-1,o[0]=L[0]*v/y,o[1]=S[0]*v/b,I&&(E.color=C[0],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I)),i[0]=2*(m[2]+S[3])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[3]*v/y,o[1]=L[3]*v/b,j&&(E.color=C[3],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[3]+S[2])/b-1,o[0]=L[2]*v/y,o[1]=S[2]*v/b,I&&(E.color=C[2],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I))}}(),p.update=(h=[1,1,-1,-1,1,-1],d=[1,-1,1,1,-1,-1],function(t){for(var e=t.ticks,r=t.bounds,n=new Float32Array(18*(e[0].length+e[1].length)),i=(this.plot.zeroLineEnable,0),a=[[],[]],o=0;o<2;++o)for(var s=a[o],l=e[o],c=r[o],u=r[o+2],f=0;f<l.length;++f){var p=(l[f].x-c)/(u-c);s.push(p);for(var m=0;m<6;++m)n[i++]=p,n[i++]=h[m],n[i++]=d[m]}this.ticks=a,this.vbo.update(n)}),p.dispose=function(){this.vbo.dispose(),this.shader.dispose(),this.tickShader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220}],204:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[-1,-1,-1,1,1,-1,1,1]),s=i(e,a.lineVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawLine=(s=[0,0],l=[0,0],function(t,e,r,n,i,a){var o=this.plot,c=this.shader,u=o.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,c.uniforms.start=s,c.uniforms.end=l,c.uniforms.width=i*o.pixelRatio,c.uniforms.color=a,u.drawArrays(u.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],205:[function(t,e,r){"use strict";var n=t("glslify"),i=n(["precision lowp float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = vec4(color.xyz * color.w, color.w);\n}\n"]);e.exports={lineVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 start, end;\nuniform float width;\n\nvec2 perp(vec2 v) {\n  return vec2(v.y, -v.x);\n}\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  vec2 delta = normalize(perp(start - end));\n  vec2 offset = mix(start, end, 0.5 * (coord.y+1.0));\n  gl_Position = vec4(screen(offset + 0.5 * width * delta * coord.x), 0, 1);\n}\n"]),lineFrag:i,textVert:n(["#define GLSLIFY 1\nattribute vec3 textCoordinate;\n\nuniform vec2 dataScale, dataShift, dataAxis, screenOffset, textScale;\nuniform float angle;\n\nvoid main() {\n  float dataOffset  = textCoordinate.z;\n  vec2 glyphOffset  = textCoordinate.xy;\n  mat2 glyphMatrix = mat2(cos(angle), sin(angle), -sin(angle), cos(angle));\n  vec2 screenCoordinate = dataAxis * (dataScale * dataOffset + dataShift) +\n    glyphMatrix * glyphOffset * textScale + screenOffset;\n  gl_Position = vec4(screenCoordinate, 0, 1);\n}\n"]),textFrag:i,gridVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale;\nuniform float lineWidth;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  pos += 10.0 * dataCoord.y * vec2(dataAxis.y, -dataAxis.x) + dataCoord.z * lineWidth;\n  gl_Position = vec4(pos, 0, 1);\n}\n"]),gridFrag:i,boxVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 lo, hi;\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  gl_Position = vec4(screen(mix(lo, hi, coord)), 0, 1);\n}\n"]),tickVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale, screenOffset, tickScale;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  gl_Position = vec4(pos + tickScale*dataCoord.yz + screenOffset, 0, 1);\n}\n"])}},{glslify:253}],206:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,s.textVert,s.textFrag);return new l(t,r,a)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("text-cache"),o=t("binary-search-bounds"),s=t("./shaders");function l(t,e,r){this.plot=t,this.vbo=e,this.shader=r,this.tickOffset=[[],[]],this.tickX=[[],[]],this.labelOffset=[0,0],this.labelCount=[0,0]}var c,u,f,h,d,p,m=l.prototype;m.drawTicks=(c=[0,0],u=[0,0],f=[0,0],function(t){var e=this.plot,r=this.shader,n=this.tickX[t],i=this.tickOffset[t],a=e.gl,s=e.viewBox,l=e.dataBox,h=e.screenBox,d=e.pixelRatio,p=e.tickEnable,m=e.tickPad,v=e.tickColor,g=e.tickAngle,y=e.labelEnable,b=e.labelPad,x=e.labelColor,_=e.labelAngle,w=this.labelOffset[t],M=this.labelCount[t],k=o.lt(n,l[t]),A=o.le(n,l[t+2]);c[0]=c[1]=0,c[t]=1,u[t]=(s[2+t]+s[t])/(h[2+t]-h[t])-1;var T=2/h[2+(1^t)]-h[1^t];u[1^t]=T*s[1^t]-1,p[t]&&(u[1^t]-=T*d*m[t],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t],r.uniforms.angle=g[t],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t]&&M&&(u[1^t]-=T*d*b[t],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t],r.uniforms.angle=_[t],a.drawArrays(a.TRIANGLES,w,M)),u[1^t]=T*s[2+(1^t)]-1,p[t+2]&&(u[1^t]+=T*d*m[t+2],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t+2],r.uniforms.angle=g[t+2],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t+2]&&M&&(u[1^t]+=T*d*b[t+2],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t+2],r.uniforms.angle=_[t+2],a.drawArrays(a.TRIANGLES,w,M))}),m.drawTitle=function(){var t=[0,0],e=[0,0];return function(){var r=this.plot,n=this.shader,i=r.gl,a=r.screenBox,o=r.titleCenter,s=r.titleAngle,l=r.titleColor,c=r.pixelRatio;if(this.titleCount){for(var u=0;u<2;++u)e[u]=2*(o[u]*c-a[u])/(a[2+u]-a[u])-1;n.bind(),n.uniforms.dataAxis=t,n.uniforms.screenOffset=e,n.uniforms.angle=s,n.uniforms.color=l,i.drawArrays(i.TRIANGLES,this.titleOffset,this.titleCount)}}}(),m.bind=(h=[0,0],d=[0,0],p=[0,0],function(){var t=this.plot,e=this.shader,r=t._tickBounds,n=t.dataBox,i=t.screenBox,a=t.viewBox;e.bind();for(var o=0;o<2;++o){var s=r[o],l=r[o+2]-s,c=.5*(n[o+2]+n[o]),u=n[o+2]-n[o],f=a[o],m=a[o+2]-f,v=i[o],g=i[o+2]-v;d[o]=2*l/u*m/g,h[o]=2*(s-c)/u*m/g}p[1]=2*t.pixelRatio/(i[3]-i[1]),p[0]=p[1]*(i[3]-i[1])/(i[2]-i[0]),e.uniforms.dataScale=d,e.uniforms.dataShift=h,e.uniforms.textScale=p,this.vbo.bind(),e.attributes.textCoordinate.pointer()}),m.update=function(t){var e,r,n,i,o,s=[],l=t.ticks,c=t.bounds;for(o=0;o<2;++o){var u=[Math.floor(s.length/3)],f=[-1/0],h=l[o];for(e=0;e<h.length;++e){var d=h[e],p=d.x,m=d.text,v=d.font||"sans-serif";i=d.fontSize||12;for(var g=1/(c[o+2]-c[o]),y=c[o],b=m.split("\n"),x=0;x<b.length;x++)for(n=a(v,b[x]).data,r=0;r<n.length;r+=2)s.push(n[r]*i,-n[r+1]*i-x*i*1.2,(p-y)*g);u.push(Math.floor(s.length/3)),f.push(p)}this.tickOffset[o]=u,this.tickX[o]=f}for(o=0;o<2;++o){for(this.labelOffset[o]=Math.floor(s.length/3),n=a(t.labelFont[o],t.labels[o],{textAlign:"center"}).data,i=t.labelSize[o],e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.labelCount[o]=Math.floor(s.length/3)-this.labelOffset[o]}for(this.titleOffset=Math.floor(s.length/3),n=a(t.titleFont,t.title).data,i=t.titleSize,e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.titleCount=Math.floor(s.length/3)-this.titleOffset,this.vbo.update(s)},m.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220,"text-cache":525}],207:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],208:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[e.drawingBufferWidth,e.drawingBufferHeight]),c=new l(e,r);return c.grid=i(c),c.text=a(c),c.line=o(c),c.box=s(c),c.update(t),c};var n=t("gl-select-static"),i=t("./lib/grid"),a=t("./lib/text"),o=t("./lib/line"),s=t("./lib/box");function l(t,e){this.gl=t,this.pickBuffer=e,this.screenBox=[0,0,t.drawingBufferWidth,t.drawingBufferHeight],this.viewBox=[0,0,0,0],this.dataBox=[-10,-10,10,10],this.gridLineEnable=[!0,!0],this.gridLineWidth=[1,1],this.gridLineColor=[[0,0,0,1],[0,0,0,1]],this.pixelRatio=1,this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickEnable=[!0,!0,!0,!0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[15,15,15,15],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelEnable=[!0,!0,!0,!0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.titleCenter=[0,0],this.titleEnable=!0,this.titleAngle=0,this.titleColor=[0,0,0,1],this.borderColor=[0,0,0,0],this.backgroundColor=[0,0,0,0],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[4,4],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderLineEnable=[!0,!0,!0,!0],this.borderLineWidth=[2,2,2,2],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.grid=null,this.text=null,this.line=null,this.box=null,this.objects=[],this.overlays=[],this._tickBounds=[1/0,1/0,-1/0,-1/0],this.static=!1,this.dirty=!1,this.pickDirty=!1,this.pickDelay=120,this.pickRadius=10,this._pickTimeout=null,this._drawPick=this.drawPick.bind(this),this._depthCounter=0}var c=l.prototype;function u(t){for(var e=t.slice(),r=0;r<e.length;++r)e[r]=e[r].slice();return e}function f(t,e){return t.x-e.x}c.setDirty=function(){this.dirty=this.pickDirty=!0},c.setOverlayDirty=function(){this.dirty=!0},c.nextDepthValue=function(){return this._depthCounter++/65536},c.draw=function(){var t=this.gl,e=this.screenBox,r=this.viewBox,n=this.dataBox,i=this.pixelRatio,a=this.grid,o=this.line,s=this.text,l=this.objects;if(this._depthCounter=0,this.pickDirty&&(this._pickTimeout&&clearTimeout(this._pickTimeout),this.pickDirty=!1,this._pickTimeout=setTimeout(this._drawPick,this.pickDelay)),this.dirty){if(this.dirty=!1,t.bindFramebuffer(t.FRAMEBUFFER,null),t.enable(t.SCISSOR_TEST),t.disable(t.DEPTH_TEST),t.depthFunc(t.LESS),t.depthMask(!1),t.enable(t.BLEND),t.blendEquation(t.FUNC_ADD,t.FUNC_ADD),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),this.borderColor){t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]);var c=this.borderColor;t.clearColor(c[0]*c[3],c[1]*c[3],c[2]*c[3],c[3]),t.clear(t.COLOR_BUFFER_BIT|t.DEPTH_BUFFER_BIT)}t.scissor(r[0],r[1],r[2]-r[0],r[3]-r[1]),t.viewport(r[0],r[1],r[2]-r[0],r[3]-r[1]);var u=this.backgroundColor;t.clearColor(u[0]*u[3],u[1]*u[3],u[2]*u[3],u[3]),t.clear(t.COLOR_BUFFER_BIT),a.draw();var f=this.zeroLineEnable,h=this.zeroLineColor,d=this.zeroLineWidth;if(f[0]||f[1]){o.bind();for(var p=0;p<2;++p)if(f[p]&&n[p]<=0&&n[p+2]>=0){var m=e[p]-n[p]*(e[p+2]-e[p])/(n[p+2]-n[p]);0===p?o.drawLine(m,e[1],m,e[3],d[p],h[p]):o.drawLine(e[0],m,e[2],m,d[p],h[p])}}for(p=0;p<l.length;++p)l[p].draw();t.viewport(e[0],e[1],e[2]-e[0],e[3]-e[1]),t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]),this.grid.drawTickMarks(),o.bind();var v=this.borderLineEnable,g=this.borderLineWidth,y=this.borderLineColor;for(v[1]&&o.drawLine(r[0],r[1]-.5*g[1]*i,r[0],r[3]+.5*g[3]*i,g[1],y[1]),v[0]&&o.drawLine(r[0]-.5*g[0]*i,r[1],r[2]+.5*g[2]*i,r[1],g[0],y[0]),v[3]&&o.drawLine(r[2],r[1]-.5*g[1]*i,r[2],r[3]+.5*g[3]*i,g[3],y[3]),v[2]&&o.drawLine(r[0]-.5*g[0]*i,r[3],r[2]+.5*g[2]*i,r[3],g[2],y[2]),s.bind(),p=0;p<2;++p)s.drawTicks(p);this.titleEnable&&s.drawTitle();var b=this.overlays;for(p=0;p<b.length;++p)b[p].draw();t.disable(t.SCISSOR_TEST),t.disable(t.BLEND),t.depthMask(!0)}},c.drawPick=function(){if(!this.static){var t=this.pickBuffer;this.gl;this._pickTimeout=null,t.begin();for(var e=1,r=this.objects,n=0;n<r.length;++n)e=r[n].drawPick(e);t.end()}},c.pick=function(t,e){if(!this.static){var r=this.pixelRatio,n=this.pickPixelRatio,i=this.viewBox,a=0|Math.round((t-i[0]/r)*n),o=0|Math.round((e-i[1]/r)*n),s=this.pickBuffer.query(a,o,this.pickRadius);if(!s)return null;for(var l=s.id+(s.value[0]<<8)+(s.value[1]<<16)+(s.value[2]<<24),c=this.objects,u=0;u<c.length;++u){var f=c[u].pick(a,o,l);if(f)return f}return null}},c.setScreenBox=function(t){var e=this.screenBox,r=this.pixelRatio;e[0]=0|Math.round(t[0]*r),e[1]=0|Math.round(t[1]*r),e[2]=0|Math.round(t[2]*r),e[3]=0|Math.round(t[3]*r),this.setDirty()},c.setDataBox=function(t){var e=this.dataBox;(e[0]!==t[0]||e[1]!==t[1]||e[2]!==t[2]||e[3]!==t[3])&&(e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],this.setDirty())},c.setViewBox=function(t){var e=this.pixelRatio,r=this.viewBox;r[0]=0|Math.round(t[0]*e),r[1]=0|Math.round(t[1]*e),r[2]=0|Math.round(t[2]*e),r[3]=0|Math.round(t[3]*e);var n=this.pickPixelRatio;this.pickBuffer.shape=[0|Math.round((t[2]-t[0])*n),0|Math.round((t[3]-t[1])*n)],this.setDirty()},c.update=function(t){t=t||{};var e=this.gl;this.pixelRatio=t.pixelRatio||1;var r=this.pixelRatio;this.pickPixelRatio=Math.max(r,1),this.setScreenBox(t.screenBox||[0,0,e.drawingBufferWidth/r,e.drawingBufferHeight/r]);this.screenBox;this.setViewBox(t.viewBox||[.125*(this.screenBox[2]-this.screenBox[0])/r,.125*(this.screenBox[3]-this.screenBox[1])/r,.875*(this.screenBox[2]-this.screenBox[0])/r,.875*(this.screenBox[3]-this.screenBox[1])/r]);var n=this.viewBox,i=(n[2]-n[0])/(n[3]-n[1]);this.setDataBox(t.dataBox||[-10,-10/i,10,10/i]),this.borderColor=!1!==t.borderColor&&(t.borderColor||[0,0,0,0]).slice(),this.backgroundColor=(t.backgroundColor||[0,0,0,0]).slice(),this.gridLineEnable=(t.gridLineEnable||[!0,!0]).slice(),this.gridLineWidth=(t.gridLineWidth||[1,1]).slice(),this.gridLineColor=u(t.gridLineColor||[[.5,.5,.5,1],[.5,.5,.5,1]]),this.zeroLineEnable=(t.zeroLineEnable||[!0,!0]).slice(),this.zeroLineWidth=(t.zeroLineWidth||[4,4]).slice(),this.zeroLineColor=u(t.zeroLineColor||[[0,0,0,1],[0,0,0,1]]),this.tickMarkLength=(t.tickMarkLength||[0,0,0,0]).slice(),this.tickMarkWidth=(t.tickMarkWidth||[0,0,0,0]).slice(),this.tickMarkColor=u(t.tickMarkColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.titleCenter=(t.titleCenter||[.5*(n[0]+n[2])/r,(n[3]+120)/r]).slice(),this.titleEnable=!("titleEnable"in t&&!t.titleEnable),this.titleAngle=t.titleAngle||0,this.titleColor=(t.titleColor||[0,0,0,1]).slice(),this.labelPad=(t.labelPad||[15,15,15,15]).slice(),this.labelAngle=(t.labelAngle||[0,Math.PI/2,0,3*Math.PI/2]).slice(),this.labelEnable=(t.labelEnable||[!0,!0,!0,!0]).slice(),this.labelColor=u(t.labelColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.tickPad=(t.tickPad||[15,15,15,15]).slice(),this.tickAngle=(t.tickAngle||[0,0,0,0]).slice(),this.tickEnable=(t.tickEnable||[!0,!0,!0,!0]).slice(),this.tickColor=u(t.tickColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.borderLineEnable=(t.borderLineEnable||[!0,!0,!0,!0]).slice(),this.borderLineWidth=(t.borderLineWidth||[2,2,2,2]).slice(),this.borderLineColor=u(t.borderLineColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]);var a=t.ticks||[[],[]],o=this._tickBounds;o[0]=o[1]=1/0,o[2]=o[3]=-1/0;for(var s=0;s<2;++s){var l=a[s].slice(0);0!==l.length&&(l.sort(f),o[s]=Math.min(o[s],l[0].x),o[s+2]=Math.max(o[s+2],l[l.length-1].x))}this.grid.update({bounds:o,ticks:a}),this.text.update({bounds:o,ticks:a,labels:t.labels||["x","y"],labelSize:t.labelSize||[12,12],labelFont:t.labelFont||["sans-serif","sans-serif"],title:t.title||"",titleSize:t.titleSize||18,titleFont:t.titleFont||"sans-serif"}),this.static=!!t.static,this.setDirty()},c.dispose=function(){this.box.dispose(),this.grid.dispose(),this.text.dispose(),this.line.dispose();for(var t=this.objects.length-1;t>=0;--t)this.objects[t].dispose();this.objects.length=0;for(t=this.overlays.length-1;t>=0;--t)this.overlays[t].dispose();this.overlays.length=0,this.gl=null},c.addObject=function(t){this.objects.indexOf(t)<0&&(this.objects.push(t),this.setDirty())},c.removeObject=function(t){for(var e=this.objects,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setDirty();break}},c.addOverlay=function(t){this.overlays.indexOf(t)<0&&(this.overlays.push(t),this.setOverlayDirty())},c.removeOverlay=function(t){for(var e=this.overlays,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setOverlayDirty();break}}},{"./lib/box":202,"./lib/grid":203,"./lib/line":204,"./lib/text":206,"gl-select-static":219}],209:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\nattribute vec2 position;\nvarying vec2 uv;\nvoid main() {\n  uv = position;\n  gl_Position = vec4(position, 0, 1);\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D accumBuffer;\nvarying vec2 uv;\n\nvoid main() {\n  vec4 accum = texture2D(accumBuffer, 0.5 * (uv + 1.0));\n  gl_FragColor = min(vec4(1,1,1,1), accum);\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec2"}])}},{"gl-shader":220,glslify:253}],210:[function(t,e,r){"use strict";e.exports=function(t){var e=!1,r=((t=t||{}).pixelRatio||parseFloat(window.devicePixelRatio),t.canvas);if(!r)if(r=document.createElement("canvas"),t.container){var v=t.container;v.appendChild(r)}else document.body.appendChild(r);var g=t.gl;g||(g=function(t,e){var r=null;try{(r=t.getContext("webgl",e))||(r=t.getContext("experimental-webgl",e))}catch(t){return null}return r}(r,t.glOptions||{premultipliedAlpha:!0,antialias:!0}));if(!g)throw new Error("webgl not supported");var y=t.bounds||[[-10,-10,-10],[10,10,10]],b=new function(){this.mouse=[-1,-1],this.screen=null,this.distance=1/0,this.index=null,this.dataCoordinate=null,this.dataPosition=null,this.object=null,this.data=null},x=l(g,[g.drawingBufferWidth,g.drawingBufferHeight],{preferFloat:!d}),_=h(g),w=t.camera||{eye:[2,0,0],center:[0,0,0],up:[0,1,0],zoomMin:.1,zoomMax:100,mode:"turntable"},M=t.axes||{},k=i(g,M);k.enable=!M.disable;var A=t.spikes||{},T=o(g,A),E=[],S=[],L=[],C=[],P=!0,z=!0,O=new Array(16),D=new Array(16),I={view:null,projection:O,model:D},z=!0,R=[g.drawingBufferWidth,g.drawingBufferHeight],N={gl:g,contextLost:!1,pixelRatio:t.pixelRatio||parseFloat(window.devicePixelRatio),canvas:r,selection:b,camera:n(r,w),axes:k,axesPixels:null,spikes:T,bounds:y,objects:E,shape:R,aspect:t.aspectRatio||[1,1,1],pickRadius:t.pickRadius||10,zNear:t.zNear||.01,zFar:t.zFar||1e3,fovy:t.fovy||Math.PI/4,clearColor:t.clearColor||[0,0,0,0],autoResize:m(t.autoResize),autoBounds:m(t.autoBounds),autoScale:!!t.autoScale,autoCenter:m(t.autoCenter),clipToBounds:m(t.clipToBounds),snapToData:!!t.snapToData,onselect:t.onselect||null,onrender:t.onrender||null,onclick:t.onclick||null,cameraParams:I,oncontextloss:null,mouseListener:null},F=[g.drawingBufferWidth/N.pixelRatio|0,g.drawingBufferHeight/N.pixelRatio|0];function j(){if(!e&&N.autoResize){var t=r.parentNode,n=1,i=1;t&&t!==document.body?(n=t.clientWidth,i=t.clientHeight):(n=window.innerWidth,i=window.innerHeight);var a=0|Math.ceil(n*N.pixelRatio),o=0|Math.ceil(i*N.pixelRatio);if(a!==r.width||o!==r.height){r.width=a,r.height=o;var s=r.style;s.position=s.position||"absolute",s.left="0px",s.top="0px",s.width=n+"px",s.height=i+"px",P=!0}}}N.autoResize&&j();function B(){for(var t=E.length,e=C.length,r=0;r<e;++r)L[r]=0;t:for(var r=0;r<t;++r){var n=E[r],i=n.pickSlots;if(i){for(var a=0;a<e;++a)if(L[a]+i<255){S[r]=a,n.setPickBase(L[a]+1),L[a]+=i;continue t}var o=s(g,R);S[r]=e,C.push(o),L.push(i),n.setPickBase(1),e+=1}else S[r]=-1}for(;e>0&&0===L[e-1];)L.pop(),C.pop().dispose()}window.addEventListener("resize",j),N.update=function(t){e||(t=t||{},P=!0,z=!0)},N.add=function(t){e||(t.axes=k,E.push(t),S.push(-1),P=!0,z=!0,B())},N.remove=function(t){if(!e){var r=E.indexOf(t);r<0||(E.splice(r,1),S.pop(),P=!0,z=!0,B())}},N.dispose=function(){if(!e&&(e=!0,window.removeEventListener("resize",j),r.removeEventListener("webglcontextlost",q),N.mouseListener.enabled=!1,!N.contextLost)){k.dispose(),T.dispose();for(var t=0;t<E.length;++t)E[t].dispose();x.dispose();for(var t=0;t<C.length;++t)C[t].dispose();_.dispose(),g=null,k=null,T=null,E=[]}};var U=!1,V=0;function q(){if(N.contextLost)return!0;g.isContextLost()&&(N.contextLost=!0,N.mouseListener.enabled=!1,N.selection.object=null,N.oncontextloss&&N.oncontextloss())}N.mouseListener=u(r,function(t,r,n){if(!e){var i=C.length,a=E.length,o=b.object;b.distance=1/0,b.mouse[0]=r,b.mouse[1]=n,b.object=null,b.screen=null,b.dataCoordinate=b.dataPosition=null;var s=!1;if(t&&V)U=!0;else{U&&(z=!0),U=!1;for(var l=0;l<i;++l){var c=C[l].query(r,F[1]-n-1,N.pickRadius);if(c){if(c.distance>b.distance)continue;for(var u=0;u<a;++u){var f=E[u];if(S[u]===l){var h=f.pick(c);h&&(b.buttons=t,b.screen=c.coord,b.distance=c.distance,b.object=f,b.index=h.distance,b.dataPosition=h.position,b.dataCoordinate=h.dataCoordinate,b.data=h,s=!0)}}}}}o&&o!==b.object&&(o.highlight&&o.highlight(null),P=!0),b.object&&(b.object.highlight&&b.object.highlight(b.data),P=!0),(s=s||b.object!==o)&&N.onselect&&N.onselect(b),1&t&&!(1&V)&&N.onclick&&N.onclick(b),V=t}}),r.addEventListener("webglcontextlost",q);var H=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],G=[H[0].slice(),H[1].slice()];function Y(){if(!q()){j();var t=N.camera.tick();I.view=N.camera.matrix,P=P||t,z=z||t,k.pixelRatio=N.pixelRatio,T.pixelRatio=N.pixelRatio;var e=E.length,r=H[0],n=H[1];r[0]=r[1]=r[2]=1/0,n[0]=n[1]=n[2]=-1/0;for(var i=0;i<e;++i){var o=E[i];o.pixelRatio=N.pixelRatio,o.axes=N.axes,P=P||!!o.dirty,z=z||!!o.dirty;var s=o.bounds;if(s)for(var l=s[0],u=s[1],h=0;h<3;++h)r[h]=Math.min(r[h],l[h]),n[h]=Math.max(n[h],u[h])}var d=N.bounds;if(N.autoBounds)for(var h=0;h<3;++h){if(n[h]<r[h])r[h]=-1,n[h]=1;else{r[h]===n[h]&&(r[h]-=1,n[h]+=1);var m=.05*(n[h]-r[h]);r[h]=r[h]-m,n[h]=n[h]+m}d[0][h]=r[h],d[1][h]=n[h]}for(var v=!1,h=0;h<3;++h)v=v||G[0][h]!==d[0][h]||G[1][h]!==d[1][h],G[0][h]=d[0][h],G[1][h]=d[1][h];if(z=z||v,P=P||v){if(v){for(var y=[0,0,0],i=0;i<3;++i)y[i]=p((d[1][i]-d[0][i])/10);k.autoTicks?k.update({bounds:d,tickSpacing:y}):k.update({bounds:d})}var w=g.drawingBufferWidth,M=g.drawingBufferHeight;R[0]=w,R[1]=M,F[0]=0|Math.max(w/N.pixelRatio,1),F[1]=0|Math.max(M/N.pixelRatio,1),f(O,N.fovy,w/M,N.zNear,N.zFar);for(var i=0;i<16;++i)D[i]=0;D[15]=1;for(var A=0,i=0;i<3;++i)A=Math.max(A,d[1][i]-d[0][i]);for(var i=0;i<3;++i)N.autoScale?D[5*i]=N.aspect[i]/(d[1][i]-d[0][i]):D[5*i]=1/A,N.autoCenter&&(D[12+i]=.5*-D[5*i]*(d[0][i]+d[1][i]));for(var i=0;i<e;++i){var o=E[i];o.axesBounds=d,N.clipToBounds&&(o.clipBounds=d)}b.object&&(N.snapToData?T.position=b.dataCoordinate:T.position=b.dataPosition,T.bounds=d),z&&(z=!1,function(){if(q())return;g.colorMask(!0,!0,!0,!0),g.depthMask(!0),g.disable(g.BLEND),g.enable(g.DEPTH_TEST);for(var t=E.length,e=C.length,r=0;r<e;++r){var n=C[r];n.shape=F,n.begin();for(var i=0;i<t;++i)if(S[i]===r){var a=E[i];a.drawPick&&(a.pixelRatio=1,a.drawPick(I))}n.end()}}()),N.axesPixels=a(N.axes,I,w,M),N.onrender&&N.onrender(),g.bindFramebuffer(g.FRAMEBUFFER,null),g.viewport(0,0,w,M);var L=N.clearColor;g.clearColor(L[0],L[1],L[2],L[3]),g.clear(g.COLOR_BUFFER_BIT|g.DEPTH_BUFFER_BIT),g.depthMask(!0),g.colorMask(!0,!0,!0,!0),g.enable(g.DEPTH_TEST),g.depthFunc(g.LEQUAL),g.disable(g.BLEND),g.disable(g.CULL_FACE);var B=!1;k.enable&&(B=B||k.isTransparent(),k.draw(I)),T.axes=k,b.object&&T.draw(I),g.disable(g.CULL_FACE);for(var i=0;i<e;++i){var o=E[i];o.axes=k,o.pixelRatio=N.pixelRatio,o.isOpaque&&o.isOpaque()&&o.draw(I),o.isTransparent&&o.isTransparent()&&(B=!0)}if(B){x.shape=R,x.bind(),g.clear(g.DEPTH_BUFFER_BIT),g.colorMask(!1,!1,!1,!1),g.depthMask(!0),g.depthFunc(g.LESS),k.enable&&k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isOpaque&&o.isOpaque()&&o.draw(I)}g.enable(g.BLEND),g.blendEquation(g.FUNC_ADD),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.colorMask(!0,!0,!0,!0),g.depthMask(!1),g.clearColor(0,0,0,0),g.clear(g.COLOR_BUFFER_BIT),k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isTransparent&&o.isTransparent()&&o.drawTransparent(I)}g.bindFramebuffer(g.FRAMEBUFFER,null),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.disable(g.DEPTH_TEST),_.bind(),x.color[0].bind(0),_.uniforms.accumBuffer=0,c(g),g.disable(g.BLEND)}P=!1;for(var i=0;i<e;++i)E[i].dirty=!1}}}return function t(){e||N.contextLost||(requestAnimationFrame(t),Y())}(),N.redraw=function(){e||(P=!0,Y())},N};var n=t("3d-view-controls"),i=t("gl-axes3d"),a=t("gl-axes3d/properties"),o=t("gl-spikes3d"),s=t("gl-select-static"),l=t("gl-fbo"),c=t("a-big-triangle"),u=t("mouse-change"),f=t("gl-mat4/perspective"),h=t("./lib/shader"),d=t("is-mobile")();function p(t){var e=Math.round(Math.log(Math.abs(t))/Math.log(10));if(e<0){var r=Math.round(Math.pow(10,-e));return Math.ceil(t*r)/r}if(e>0){r=Math.round(Math.pow(10,e));return Math.ceil(t/r)*r}return Math.ceil(t)}function m(t){return"boolean"!=typeof t||t}},{"./lib/shader":209,"3d-view-controls":39,"a-big-triangle":42,"gl-axes3d":157,"gl-axes3d/properties":164,"gl-fbo":171,"gl-mat4/perspective":189,"gl-select-static":219,"gl-spikes3d":229,"is-mobile":265,"mouse-change":424}],211:[function(t,e,r){var n=t("glslify");r.pointVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform float pointCloud;\n\nhighp float rand(vec2 co) {\n  highp float a = 12.9898;\n  highp float b = 78.233;\n  highp float c = 43758.5453;\n  highp float d = dot(co.xy, vec2(a, b));\n  highp float e = mod(d, 3.14);\n  return fract(sin(e) * c);\n}\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n    // if we don't jitter the point size a bit, overall point cloud\n    // saturation 'jumps' on zooming, which is disturbing and confusing\n  gl_PointSize = pointSize * ((19.5 + rand(position)) / 20.0);\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    // get the same square surface as circle would be\n    gl_PointSize *= 0.886;\n  }\n}"]),r.pointFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 color, borderColor;\nuniform float centerFraction;\nuniform float pointCloud;\n\nvoid main() {\n  float radius;\n  vec4 baseColor;\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    if(centerFraction == 1.0) {\n      gl_FragColor = color;\n    } else {\n      gl_FragColor = mix(borderColor, color, centerFraction);\n    }\n  } else {\n    radius = length(2.0 * gl_PointCoord.xy - 1.0);\n    if(radius > 1.0) {\n      discard;\n    }\n    baseColor = mix(borderColor, color, step(radius, centerFraction));\n    gl_FragColor = vec4(baseColor.rgb * baseColor.a, baseColor.a);\n  }\n}\n"]),r.pickVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform vec4 pickOffset;\n\nvarying vec4 fragId;\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n  gl_PointSize = pointSize;\n\n  vec4 id = pickId + pickOffset;\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  fragId = id;\n}\n"]),r.pickFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\n\nvoid main() {\n  float radius = length(2.0 * gl_PointCoord.xy - 1.0);\n  if(radius > 1.0) {\n    discard;\n  }\n  gl_FragColor = fragId / 255.0;\n}\n"])},{glslify:253}],212:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("typedarray-pool"),o=t("./lib/shader");function s(t,e,r,n,i){this.plot=t,this.offsetBuffer=e,this.pickBuffer=r,this.shader=n,this.pickShader=i,this.sizeMin=.5,this.sizeMinCap=2,this.sizeMax=20,this.areaRatio=1,this.pointCount=0,this.color=[1,0,0,1],this.borderColor=[0,0,0,1],this.blend=!1,this.pickOffset=0,this.points=null}e.exports=function(t,e){var r=t.gl,a=i(r),l=i(r),c=n(r,o.pointVertex,o.pointFragment),u=n(r,o.pickVertex,o.pickFragment),f=new s(t,a,l,c,u);return f.update(e),t.addObject(f),f};var l,c,u=s.prototype;u.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.offsetBuffer.dispose(),this.pickBuffer.dispose(),this.plot.removeObject(this)},u.update=function(t){var e;function r(e,r){return e in t?t[e]:r}t=t||{},this.sizeMin=r("sizeMin",.5),this.sizeMax=r("sizeMax",20),this.color=r("color",[1,0,0,1]).slice(),this.areaRatio=r("areaRatio",1),this.borderColor=r("borderColor",[0,0,0,1]).slice(),this.blend=r("blend",!1);var n=t.positions.length>>>1,i=t.positions instanceof Float32Array,o=t.idToIndex instanceof Int32Array&&t.idToIndex.length>=n,s=t.positions,l=i?s:a.mallocFloat32(s.length),c=o?t.idToIndex:a.mallocInt32(n);if(i||l.set(s),!o)for(l.set(s),e=0;e<n;e++)c[e]=e;this.points=s,this.offsetBuffer.update(l),this.pickBuffer.update(c),i||a.free(l),o||a.free(c),this.pointCount=n,this.pickOffset=0},u.unifiedDraw=(l=[1,0,0,0,1,0,0,0,1],c=[0,0,0,0],function(t){var e=void 0!==t,r=e?this.pickShader:this.shader,n=this.plot.gl,i=this.plot.dataBox;if(0===this.pointCount)return t;var a=i[2]-i[0],o=i[3]-i[1],s=function(t,e){var r,n=0,i=t.length>>>1;for(r=0;r<i;r++){var a=t[2*r],o=t[2*r+1];a>=e[0]&&a<=e[2]&&o>=e[1]&&o<=e[3]&&n++}return n}(this.points,i),u=this.plot.pickPixelRatio*Math.max(Math.min(this.sizeMinCap,this.sizeMin),Math.min(this.sizeMax,this.sizeMax/Math.pow(s,.33333)));l[0]=2/a,l[4]=2/o,l[6]=-2*i[0]/a-1,l[7]=-2*i[1]/o-1,this.offsetBuffer.bind(),r.bind(),r.attributes.position.pointer(),r.uniforms.matrix=l,r.uniforms.color=this.color,r.uniforms.borderColor=this.borderColor,r.uniforms.pointCloud=u<5,r.uniforms.pointSize=u,r.uniforms.centerFraction=Math.min(1,Math.max(0,Math.sqrt(1-this.areaRatio))),e&&(c[0]=255&t,c[1]=t>>8&255,c[2]=t>>16&255,c[3]=t>>24&255,this.pickBuffer.bind(),r.attributes.pickId.pointer(n.UNSIGNED_BYTE),r.uniforms.pickOffset=c,this.pickOffset=t);var f=n.getParameter(n.BLEND),h=n.getParameter(n.DITHER);return f&&!this.blend&&n.disable(n.BLEND),h&&n.disable(n.DITHER),n.drawArrays(n.POINTS,0,this.pointCount),f&&!this.blend&&n.enable(n.BLEND),h&&n.enable(n.DITHER),t+this.pointCount}),u.draw=u.unifiedDraw,u.drawPick=u.unifiedDraw,u.pick=function(t,e,r){var n=this.pickOffset,i=this.pointCount;if(r<n||r>=n+i)return null;var a=r-n,o=this.points;return{object:this,pointId:a,dataCoord:[o[2*a],o[2*a+1]]}}},{"./lib/shader":211,"gl-buffer":165,"gl-shader":220,"typedarray-pool":534}],213:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c=e[0],u=e[1],f=e[2],h=e[3],d=r[0],p=r[1],m=r[2],v=r[3];(a=c*d+u*p+f*m+h*v)<0&&(a=-a,d=-d,p=-p,m=-m,v=-v);1-a>1e-6?(i=Math.acos(a),o=Math.sin(i),s=Math.sin((1-n)*i)/o,l=Math.sin(n*i)/o):(s=1-n,l=n);return t[0]=s*c+l*d,t[1]=s*u+l*p,t[2]=s*f+l*m,t[3]=s*h+l*v,t}},{}],214:[function(t,e,r){"use strict";var n=t("vectorize-text");e.exports=function(t,e){var r=i[e];r||(r=i[e]={});if(t in r)return r[t];for(var a=n(t,{textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),o=n(t,{triangles:!0,textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),s=[[1/0,1/0],[-1/0,-1/0]],l=0;l<a.positions.length;++l)for(var c=a.positions[l],u=0;u<2;++u)s[0][u]=Math.min(s[0][u],c[u]),s[1][u]=Math.max(s[1][u],c[u]);return r[t]=[o,a,s]};var i={}},{"vectorize-text":548}],215:[function(t,e,r){var n=t("gl-shader"),i=t("glslify"),a=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform vec4 highlightId;\nuniform float highlightScale;\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   || \n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = 1.0;\n    if(distance(highlightId, id) < 0.0001) {\n      scale = highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1);\n    vec4 viewPosition = view * worldPosition;\n    viewPosition = viewPosition / viewPosition.w;\n    vec4 clipPosition = projection * (viewPosition + scale * vec4(glyph.x, -glyph.y, 0, 0));\n    \n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),o=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float highlightScale, pixelRatio;\nuniform vec4 highlightId;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = pixelRatio;\n    if(distance(highlightId.bgr, id.bgr) < 0.001) {\n      scale *= highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1.0);\n    vec4 viewPosition = view * worldPosition;\n    vec4 clipPosition = projection * viewPosition;\n    clipPosition /= clipPosition.w;\n    \n    gl_Position = clipPosition + vec4(screenSize * scale * vec2(glyph.x, -glyph.y), 0.0, 0.0);\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),s=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform float highlightScale;\nuniform vec4 highlightId;\nuniform vec3 axes[2];\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float scale, pixelRatio;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   ||\n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float lscale = pixelRatio * scale;\n    if(distance(highlightId, id) < 0.0001) {\n      lscale *= highlightScale;\n    }\n\n    vec4 clipCenter   = projection * view * model * vec4(position, 1);\n    vec3 dataPosition = position + 0.5*lscale*(axes[0] * glyph.x + axes[1] * glyph.y) * clipCenter.w * screenSize.y;\n    vec4 clipPosition = projection * view * model * vec4(dataPosition, 1);\n\n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = dataPosition;\n  }\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float opacity;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   ||\n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = interpColor * opacity;\n  }\n}\n"]),c=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float pickGroup;\n\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   || \n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = vec4(pickGroup, pickId.bgr);\n  }\n}"]),u=[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"glyph",type:"vec2"},{name:"id",type:"vec4"}],f={vertex:a,fragment:l,attributes:u},h={vertex:o,fragment:l,attributes:u},d={vertex:s,fragment:l,attributes:u},p={vertex:a,fragment:c,attributes:u},m={vertex:o,fragment:c,attributes:u},v={vertex:s,fragment:c,attributes:u};function g(t,e){var r=n(t,e),i=r.attributes;return i.position.location=0,i.color.location=1,i.glyph.location=2,i.id.location=3,r}r.createPerspective=function(t){return g(t,f)},r.createOrtho=function(t){return g(t,h)},r.createProject=function(t){return g(t,d)},r.createPickPerspective=function(t){return g(t,p)},r.createPickOrtho=function(t){return g(t,m)},r.createPickProject=function(t){return g(t,v)}},{"gl-shader":220,glslify:253}],216:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("typedarray-pool"),o=t("gl-mat4/multiply"),s=t("./lib/shaders"),l=t("./lib/glyphs"),c=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function u(t,e){var r=t[0],n=t[1],i=t[2],a=t[3];return t[0]=e[0]*r+e[4]*n+e[8]*i+e[12]*a,t[1]=e[1]*r+e[5]*n+e[9]*i+e[13]*a,t[2]=e[2]*r+e[6]*n+e[10]*i+e[14]*a,t[3]=e[3]*r+e[7]*n+e[11]*i+e[15]*a,t}function f(t,e,r,n){return u(n,n),u(n,n),u(n,n)}function h(t,e,r,n,i,a,o,s,l,c,u,f){this.gl=t,this.pixelRatio=1,this.shader=e,this.orthoShader=r,this.projectShader=n,this.pointBuffer=i,this.colorBuffer=a,this.glyphBuffer=o,this.idBuffer=s,this.vao=l,this.vertexCount=0,this.lineVertexCount=0,this.opacity=1,this.lineWidth=0,this.projectScale=[2/3,2/3,2/3],this.projectOpacity=[1,1,1],this.pickId=0,this.pickPerspectiveShader=c,this.pickOrthoShader=u,this.pickProjectShader=f,this.points=[],this._selectResult=new function(t,e){this.index=t,this.dataCoordinate=this.position=e}(0,[0,0,0]),this.useOrtho=!0,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.axesProject=[!0,!0,!0],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.highlightId=[1,1,1,1],this.highlightScale=2,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.dirty=!0}e.exports=function(t){var e=t.gl,r=s.createPerspective(e),a=s.createOrtho(e),o=s.createProject(e),l=s.createPickPerspective(e),c=s.createPickOrtho(e),u=s.createPickProject(e),f=n(e),d=n(e),p=n(e),m=n(e),v=i(e,[{buffer:f,size:3,type:e.FLOAT},{buffer:d,size:4,type:e.FLOAT},{buffer:p,size:2,type:e.FLOAT},{buffer:m,size:4,type:e.UNSIGNED_BYTE,normalized:!0}]),g=new h(e,r,a,o,f,d,p,m,v,l,c,u);return g.update(t),g};var d=h.prototype;d.pickSlots=1,d.setPickBase=function(t){this.pickId=t},d.isTransparent=function(){if(this.opacity<1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]<1)return!0;return!1},d.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]>=1)return!0;return!1};var p=[0,0],m=[0,0,0],v=[0,0,0],g=[0,0,0,1],y=[0,0,0,1],b=c.slice(),x=[0,0,0],_=[[0,0,0],[0,0,0]];function w(t){return t[0]=t[1]=t[2]=0,t}function M(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=1,t}function k(t,e,r,n){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[r]=n,t}function A(t,e,r,n,i){var a,s=e.axesProject,l=e.gl,u=t.uniforms,h=r.model||c,d=r.view||c,A=r.projection||c,T=e.axesBounds,E=function(t){for(var e=_,r=0;r<2;++r)for(var n=0;n<3;++n)e[r][n]=Math.max(Math.min(t[r][n],1e8),-1e8);return e}(e.clipBounds);a=e.axes&&e.axes.lastCubeProps?e.axes.lastCubeProps.axis:[1,1,1],p[0]=2/l.drawingBufferWidth,p[1]=2/l.drawingBufferHeight,t.bind(),u.view=d,u.projection=A,u.screenSize=p,u.highlightId=e.highlightId,u.highlightScale=e.highlightScale,u.clipBounds=E,u.pickGroup=e.pickId/255,u.pixelRatio=e.pixelRatio;for(var S=0;S<3;++S)if(s[S]&&e.projectOpacity[S]<1===n){u.scale=e.projectScale[S],u.opacity=e.projectOpacity[S];for(var L=b,C=0;C<16;++C)L[C]=0;for(C=0;C<4;++C)L[5*C]=1;L[5*S]=0,a[S]<0?L[12+S]=T[0][S]:L[12+S]=T[1][S],o(L,h,L),u.model=L;var P=(S+1)%3,z=(S+2)%3,O=w(m),D=w(v);O[P]=1,D[z]=1;var I=f(0,0,0,M(g,O)),R=f(0,0,0,M(y,D));if(Math.abs(I[1])>Math.abs(R[1])){var N=I;I=R,R=N,N=O,O=D,D=N;var F=P;P=z,z=F}I[0]<0&&(O[P]=-1),R[1]>0&&(D[z]=-1);var j=0,B=0;for(C=0;C<4;++C)j+=Math.pow(h[4*P+C],2),B+=Math.pow(h[4*z+C],2);O[P]/=Math.sqrt(j),D[z]/=Math.sqrt(B),u.axes[0]=O,u.axes[1]=D,u.fragClipBounds[0]=k(x,E[0],S,-1e8),u.fragClipBounds[1]=k(x,E[1],S,1e8),e.vao.draw(l.TRIANGLES,e.vertexCount),e.lineWidth>0&&(l.lineWidth(e.lineWidth),e.vao.draw(l.LINES,e.lineVertexCount,e.vertexCount))}}var T=[[-1e8,-1e8,-1e8],[1e8,1e8,1e8]];function E(t,e,r,n,i,a){var o=r.gl;if(r.vao.bind(),i===r.opacity<1||a){t.bind();var s=t.uniforms;s.model=n.model||c,s.view=n.view||c,s.projection=n.projection||c,p[0]=2/o.drawingBufferWidth,p[1]=2/o.drawingBufferHeight,s.screenSize=p,s.highlightId=r.highlightId,s.highlightScale=r.highlightScale,s.fragClipBounds=T,s.clipBounds=r.axes.bounds,s.opacity=r.opacity,s.pickGroup=r.pickId/255,s.pixelRatio=r.pixelRatio,r.vao.draw(o.TRIANGLES,r.vertexCount),r.lineWidth>0&&(o.lineWidth(r.lineWidth),r.vao.draw(o.LINES,r.lineVertexCount,r.vertexCount))}A(e,r,n,i),r.vao.unbind()}d.draw=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!1,!1)},d.drawTransparent=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!0,!1)},d.drawPick=function(t){E(this.useOrtho?this.pickOrthoShader:this.pickPerspectiveShader,this.pickProjectShader,this,t,!1,!0)},d.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=t.value[2]+(t.value[1]<<8)+(t.value[0]<<16);if(e>=this.pointCount||e<0)return null;var r=this.points[e],n=this._selectResult;n.index=e;for(var i=0;i<3;++i)n.position[i]=n.dataCoordinate[i]=r[i];return n},d.highlight=function(t){if(t){var e=t.index,r=255&e,n=e>>8&255,i=e>>16&255;this.highlightId=[r/255,n/255,i/255,0]}else this.highlightId=[1,1,1,1]},d.update=function(t){if("perspective"in(t=t||{})&&(this.useOrtho=!t.perspective),"orthographic"in t&&(this.useOrtho=!!t.orthographic),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"project"in t)if(Array.isArray(t.project))this.axesProject=t.project;else{var e=!!t.project;this.axesProject=[e,e,e]}if("projectScale"in t)if(Array.isArray(t.projectScale))this.projectScale=t.projectScale.slice();else{var r=+t.projectScale;this.projectScale=[r,r,r]}if("projectOpacity"in t)if(Array.isArray(t.projectOpacity))this.projectOpacity=t.projectOpacity.slice();else{r=+t.projectOpacity;this.projectOpacity=[r,r,r]}"opacity"in t&&(this.opacity=t.opacity),this.dirty=!0;var n=t.position;if(n){var i=t.font||"normal",o=t.alignment||[0,0],s=[1/0,1/0,1/0],c=[-1/0,-1/0,-1/0],u=t.glyph,f=t.color,h=t.size,d=t.angle,p=t.lineColor,m=0,v=0,g=0,y=n.length;t:for(var b=0;b<y;++b){for(var x=n[b],_=0;_<3;++_)if(isNaN(x[_])||!isFinite(x[_]))continue t;var w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];v+=3*w.cells.length,g+=2*M.edges.length}var A=v+g,T=a.mallocFloat(3*A),E=a.mallocFloat(4*A),S=a.mallocFloat(2*A),L=a.mallocUint32(A),C=[0,o[1]],P=0,z=v,O=[0,0,0,1],D=[0,0,0,1],I=Array.isArray(f)&&Array.isArray(f[0]),R=Array.isArray(p)&&Array.isArray(p[0]);t:for(b=0;b<y;++b){var N;for(x=n[b],_=0;_<3;++_){if(isNaN(x[_])||!isFinite(x[_])){m+=1;continue t}c[_]=Math.max(c[_],x[_]),s[_]=Math.min(s[_],x[_])}var F;w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];if(Array.isArray(f)){if(3===(F=I?f[b]:f).length){for(_=0;_<3;++_)O[_]=F[_];O[3]=1}else if(4===F.length)for(_=0;_<4;++_)O[_]=F[_]}else 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l=s[0]+(n[0]-o[0])/(o[2]-o[0])*(s[2]-s[0]),c=s[1]+(n[1]-o[1])/(o[3]-o[1])*(s[3]-s[1]);t[0]&&a.drawLine(l,c,s[0],c,e[0],r[0]),t[1]&&a.drawLine(l,c,l,s[1],e[1],r[1]),t[2]&&a.drawLine(l,c,s[2],c,e[2],r[2]),t[3]&&a.drawLine(l,c,l,s[3],e[3],r[3])}},i.dispose=function(){this.plot.removeOverlay(this)}},{}],228:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, color;\nattribute float weight;\n\nuniform mat4 model, view, projection;\nuniform vec3 coordinates[3];\nuniform vec4 colors[3];\nuniform vec2 screenShape;\nuniform float lineWidth;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vertexPosition = mix(coordinates[0],\n    mix(coordinates[2], coordinates[1], 0.5 * (position + 1.0)), abs(position));\n\n  vec4 clipPos = projection * view * model * vec4(vertexPosition, 1.0);\n  vec2 clipOffset = (projection * view * model * vec4(color, 0.0)).xy;\n  vec2 delta = weight * clipOffset * screenShape;\n  vec2 lineOffset = normalize(vec2(delta.y, -delta.x)) / screenShape;\n\n  gl_Position   = vec4(clipPos.xy + clipPos.w * 0.5 * lineWidth * lineOffset, clipPos.z, clipPos.w);\n  fragColor     = color.x * colors[0] + color.y * colors[1] + color.z * colors[2];\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragColor;\n\nvoid main() {\n  gl_FragColor = fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec3"},{name:"weight",type:"float"}])}},{"gl-shader":220,glslify:253}],229:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders/index");e.exports=function(t,e){var r=[];function o(t,e,n,i,a,o){var 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vec3 lowerBound, upperBound;\nuniform float contourTint;\nuniform vec4 contourColor;\nuniform sampler2D colormap;\nuniform vec3 clipBounds[2];\nuniform float roughness, fresnel, kambient, kdiffuse, kspecular, opacity;\nuniform float vertexColor;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec3 lightDirection, eyeDirection, surfaceNormal;\nvarying vec4 vColor;\n\nvoid main() {\n  if (kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(surfaceNormal);\n  vec3 V = normalize(eyeDirection);\n  vec3 L = normalize(lightDirection);\n\n  if(gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = max(beckmannSpecular(L, V, N, roughness), 0.);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  //decide how to interpolate color \u2014 in vertex or in fragment\n  vec4 surfaceColor = step(vertexColor, .5) * texture2D(colormap, 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planeCoordinate = uv.zw;\n\n  vColor = texture2D(colormap, vec2(value, value));\n\n  //Don't do lighting for contours\n  surfaceNormal   = vec3(1,0,0);\n  eyeDirection    = vec3(0,1,0);\n  lightDirection  = vec3(0,0,1);\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec2 shape;\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec2 planeCoordinate;\nvarying vec3 surfaceNormal;\n\nvec2 splitFloat(float v) {\n  float vh = 255.0 * v;\n  float upper = floor(vh);\n  float lower = fract(vh);\n  return vec2(upper / 255.0, floor(lower * 16.0) / 16.0);\n}\n\nvoid main() {\n  if(kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n  vec2 ux = splitFloat(planeCoordinate.x / shape.x);\n  vec2 uy = splitFloat(planeCoordinate.y / shape.y);\n  gl_FragColor = vec4(pickId, ux.x, uy.x, ux.y + 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n=t("bit-twiddle"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("typedarray-pool"),l=t("colormap"),c=t("ndarray-ops"),u=t("ndarray-pack"),f=t("ndarray"),h=t("surface-nets"),d=t("gl-mat4/multiply"),p=t("gl-mat4/invert"),m=t("binary-search-bounds"),v=t("ndarray-gradient"),g=t("./lib/shaders"),y=g.createShader,b=g.createContourShader,x=g.createPickShader,_=g.createPickContourShader,w=40,M=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1],k=[[0,0],[0,1],[1,0],[1,1],[1,0],[0,1]],A=[[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0]];!function(){for(var t=0;t<3;++t){var e=A[t],r=(t+2)%3;e[(t+1)%3+0]=1,e[r+3]=1,e[t+6]=1}}();var T=256;function E(t,e,r,n,i,a,o,l,c,u,h,d,p,m){this.gl=t,this.shape=e,this.bounds=r,this.intensityBounds=[],this._shader=n,this._pickShader=i,this._coordinateBuffer=a,this._vao=o,this._colorMap=l,this._contourShader=c,this._contourPickShader=u,this._contourBuffer=h,this._contourVAO=d,this._contourOffsets=[[],[],[]],this._contourCounts=[[],[],[]],this._vertexCount=0,this._pickResult=new function(t,e,r,n,i){this.position=t,this.index=e,this.uv=r,this.level=n,this.dataCoordinate=i}([0,0,0],[0,0],[0,0],[0,0,0],[0,0,0]),this._dynamicBuffer=p,this._dynamicVAO=m,this._dynamicOffsets=[0,0,0],this._dynamicCounts=[0,0,0],this.contourWidth=[1,1,1],this.contourLevels=[[1],[1],[1]],this.contourTint=[0,0,0],this.contourColor=[[.5,.5,.5,1],[.5,.5,.5,1],[.5,.5,.5,1]],this.showContour=!0,this.showSurface=!0,this.enableHighlight=[!0,!0,!0],this.highlightColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.highlightTint=[1,1,1],this.highlightLevel=[-1,-1,-1],this.enableDynamic=[!0,!0,!0],this.dynamicLevel=[NaN,NaN,NaN],this.dynamicColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.dynamicTint=[1,1,1],this.dynamicWidth=[1,1,1],this.axesBounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.surfaceProject=[!1,!1,!1],this.contourProject=[[!1,!1,!1],[!1,!1,!1],[!1,!1,!1]],this.colorBounds=[!1,!1],this._field=[f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0])],this.pickId=1,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.snapToData=!1,this.opacity=1,this.lightPosition=[10,1e4,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.vertexColor=0,this.dirty=!0}var S=E.prototype;S.isTransparent=function(){return this.opacity<1},S.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this._contourCounts[t].length>0||this._dynamicCounts[t]>0)return!0;return!1},S.pickSlots=1,S.setPickBase=function(t){this.pickId=t};var L=[0,0,0],C={showSurface:!1,showContour:!1,projections:[M.slice(),M.slice(),M.slice()],clipBounds:[[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]]]};function P(t,e){var r,n,i,a=e.axes&&e.axes.lastCubeProps.axis||L,o=e.showSurface,s=e.showContour;for(r=0;r<3;++r)for(o=o||e.surfaceProject[r],n=0;n<3;++n)s=s||e.contourProject[r][n];for(r=0;r<3;++r){var l=C.projections[r];for(n=0;n<16;++n)l[n]=0;for(n=0;n<4;++n)l[5*n]=1;l[5*r]=0,l[12+r]=e.axesBounds[+(a[r]>0)][r],d(l,t.model,l);var c=C.clipBounds[r];for(i=0;i<2;++i)for(n=0;n<3;++n)c[i][n]=t.clipBounds[i][n];c[0][r]=-1e8,c[1][r]=1e8}return C.showSurface=o,C.showContour=s,C}var z={model:M,view:M,projection:M,inverseModel:M.slice(),lowerBound:[0,0,0],upperBound:[0,0,0],colorMap:0,clipBounds:[[0,0,0],[0,0,0]],height:0,contourTint:0,contourColor:[0,0,0,1],permutation:[1,0,0,0,1,0,0,0,1],zOffset:-1e-4,kambient:1,kdiffuse:1,kspecular:1,lightPosition:[1e3,1e3,1e3],eyePosition:[0,0,0],roughness:1,fresnel:1,opacity:1,vertexColor:0},O=M.slice(),D=[1,0,0,0,1,0,0,0,1];function I(t,e){t=t||{};var r=this.gl;r.disable(r.CULL_FACE),this._colorMap.bind(0);var n=z;n.model=t.model||M,n.view=t.view||M,n.projection=t.projection||M,n.lowerBound=[this.bounds[0][0],this.bounds[0][1],this.colorBounds[0]||this.bounds[0][2]],n.upperBound=[this.bounds[1][0],this.bounds[1][1],this.colorBounds[1]||this.bounds[1][2]],n.contourColor=this.contourColor[0],n.inverseModel=p(n.inverseModel,n.model);for(var i=0;i<2;++i)for(var a=n.clipBounds[i],o=0;o<3;++o)a[o]=Math.min(Math.max(this.clipBounds[i][o],-1e8),1e8);n.kambient=this.ambientLight,n.kdiffuse=this.diffuseLight,n.kspecular=this.specularLight,n.roughness=this.roughness,n.fresnel=this.fresnel,n.opacity=this.opacity,n.height=0,n.permutation=D,n.vertexColor=this.vertexColor;var s=O;for(d(s,n.view,n.model),d(s,n.projection,s),p(s,s),i=0;i<3;++i)n.eyePosition[i]=s[12+i]/s[15];var l=s[15];for(i=0;i<3;++i)l+=this.lightPosition[i]*s[4*i+3];for(i=0;i<3;++i){var c=s[12+i];for(o=0;o<3;++o)c+=s[4*o+i]*this.lightPosition[o];n.lightPosition[i]=c/l}var u=P(n,this);if(u.showSurface&&e===this.opacity<1){for(this._shader.bind(),this._shader.uniforms=n,this._vao.bind(),this.showSurface&&this._vertexCount&&this._vao.draw(r.TRIANGLES,this._vertexCount),i=0;i<3;++i)this.surfaceProject[i]&&this.vertexCount&&(this._shader.uniforms.model=u.projections[i],this._shader.uniforms.clipBounds=u.clipBounds[i],this._vao.draw(r.TRIANGLES,this._vertexCount));this._vao.unbind()}if(u.showContour&&!e){var f=this._contourShader;n.kambient=1,n.kdiffuse=0,n.kspecular=0,n.opacity=1,f.bind(),f.uniforms=n;var h=this._contourVAO;for(h.bind(),i=0;i<3;++i)for(f.uniforms.permutation=A[i],r.lineWidth(this.contourWidth[i]),o=0;o<this.contourLevels[i].length;++o)this._contourCounts[i][o]&&(o===this.highlightLevel[i]?(f.uniforms.contourColor=this.highlightColor[i],f.uniforms.contourTint=this.highlightTint[i]):0!==o&&o-1!==this.highlightLevel[i]||(f.uniforms.contourColor=this.contourColor[i],f.uniforms.contourTint=this.contourTint[i]),f.uniforms.height=this.contourLevels[i][o],h.draw(r.LINES,this._contourCounts[i][o],this._contourOffsets[i][o]));for(i=0;i<3;++i)for(f.uniforms.model=u.projections[i],f.uniforms.clipBounds=u.clipBounds[i],o=0;o<3;++o)if(this.contourProject[i][o]){f.uniforms.permutation=A[o],r.lineWidth(this.contourWidth[o]);for(var m=0;m<this.contourLevels[o].length;++m)m===this.highlightLevel[o]?(f.uniforms.contourColor=this.highlightColor[o],f.uniforms.contourTint=this.highlightTint[o]):0!==m&&m-1!==this.highlightLevel[o]||(f.uniforms.contourColor=this.contourColor[o],f.uniforms.contourTint=this.contourTint[o]),f.uniforms.height=this.contourLevels[o][m],h.draw(r.LINES,this._contourCounts[o][m],this._contourOffsets[o][m])}for(h.unbind(),(h=this._dynamicVAO).bind(),i=0;i<3;++i)if(0!==this._dynamicCounts[i])for(f.uniforms.model=n.model,f.uniforms.clipBounds=n.clipBounds,f.uniforms.permutation=A[i],r.lineWidth(this.dynamicWidth[i]),f.uniforms.contourColor=this.dynamicColor[i],f.uniforms.contourTint=this.dynamicTint[i],f.uniforms.height=this.dynamicLevel[i],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]),o=0;o<3;++o)this.contourProject[o][i]&&(f.uniforms.model=u.projections[o],f.uniforms.clipBounds=u.clipBounds[o],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]));h.unbind()}}S.draw=function(t){return I.call(this,t,!1)},S.drawTransparent=function(t){return I.call(this,t,!0)};var R={model:M,view:M,projection:M,inverseModel:M,clipBounds:[[0,0,0],[0,0,0]],height:0,shape:[0,0],pickId:0,lowerBound:[0,0,0],upperBound:[0,0,0],zOffset:0,permutation:[1,0,0,0,1,0,0,0,1],lightPosition:[0,0,0],eyePosition:[0,0,0]};function N(t,e){var r=e.shape.slice(),n=t.shape.slice();c.assign(t.lo(1,1).hi(r[0],r[1]),e),c.assign(t.lo(1).hi(r[0],1),e.hi(r[0],1)),c.assign(t.lo(1,n[1]-1).hi(r[0],1),e.lo(0,r[1]-1).hi(r[0],1)),c.assign(t.lo(0,1).hi(1,r[1]),e.hi(1)),c.assign(t.lo(n[0]-1,1).hi(1,r[1]),e.lo(r[0]-1)),t.set(0,0,e.get(0,0)),t.set(0,n[1]-1,e.get(0,r[1]-1)),t.set(n[0]-1,0,e.get(r[0]-1,0)),t.set(n[0]-1,n[1]-1,e.get(r[0]-1,r[1]-1))}function F(t,e){return Array.isArray(t)?[e(t[0]),e(t[1]),e(t[2])]:[e(t),e(t),e(t)]}function j(t){return Array.isArray(t)?3===t.length?[t[0],t[1],t[2],1]:[t[0],t[1],t[2],t[3]]:[0,0,0,1]}function B(t){if(Array.isArray(t)){if(Array.isArray(t))return[j(t[0]),j(t[1]),j(t[2])];var e=j(t);return[e.slice(),e.slice(),e.slice()]}}S.drawPick=function(t){t=t||{};var e=this.gl;e.disable(e.CULL_FACE);var r=R;r.model=t.model||M,r.view=t.view||M,r.projection=t.projection||M,r.shape=this._field[2].shape,r.pickId=this.pickId/255,r.lowerBound=this.bounds[0],r.upperBound=this.bounds[1],r.permutation=D;for(var n=0;n<2;++n)for(var i=r.clipBounds[n],a=0;a<3;++a)i[a]=Math.min(Math.max(this.clipBounds[n][a],-1e8),1e8);var o=P(r,this);if(o.showSurface){for(this._pickShader.bind(),this._pickShader.uniforms=r,this._vao.bind(),this._vao.draw(e.TRIANGLES,this._vertexCount),n=0;n<3;++n)this.surfaceProject[n]&&(this._pickShader.uniforms.model=o.projections[n],this._pickShader.uniforms.clipBounds=o.clipBounds[n],this._vao.draw(e.TRIANGLES,this._vertexCount));this._vao.unbind()}if(o.showContour){var s=this._contourPickShader;s.bind(),s.uniforms=r;var l=this._contourVAO;for(l.bind(),a=0;a<3;++a)for(e.lineWidth(this.contourWidth[a]),s.uniforms.permutation=A[a],n=0;n<this.contourLevels[a].length;++n)this._contourCounts[a][n]&&(s.uniforms.height=this.contourLevels[a][n],l.draw(e.LINES,this._contourCounts[a][n],this._contourOffsets[a][n]));for(n=0;n<3;++n)for(s.uniforms.model=o.projections[n],s.uniforms.clipBounds=o.clipBounds[n],a=0;a<3;++a)if(this.contourProject[n][a]){s.uniforms.permutation=A[a],e.lineWidth(this.contourWidth[a]);for(var c=0;c<this.contourLevels[a].length;++c)this._contourCounts[a][c]&&(s.uniforms.height=this.contourLevels[a][c],l.draw(e.LINES,this._contourCounts[a][c],this._contourOffsets[a][c]))}l.unbind()}},S.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=this._field[2].shape,r=this._pickResult,n=e[0]*(t.value[0]+(t.value[2]>>4)/16)/255,i=Math.floor(n),a=n-i,o=e[1]*(t.value[1]+(15&t.value[2])/16)/255,s=Math.floor(o),l=o-s;i+=1,s+=1;var c=r.position;c[0]=c[1]=c[2]=0;for(var u=0;u<2;++u)for(var f=u?a:1-a,h=0;h<2;++h)for(var d=i+u,p=s+h,v=f*(h?l:1-l),g=0;g<3;++g)c[g]+=this._field[g].get(d,p)*v;for(var y=this._pickResult.level,b=0;b<3;++b)if(y[b]=m.le(this.contourLevels[b],c[b]),y[b]<0)this.contourLevels[b].length>0&&(y[b]=0);else if(y[b]<this.contourLevels[b].length-1){var x=this.contourLevels[b][y[b]],_=this.contourLevels[b][y[b]+1];Math.abs(x-c[b])>Math.abs(_-c[b])&&(y[b]+=1)}for(r.index[0]=a<.5?i:i+1,r.index[1]=l<.5?s:s+1,r.uv[0]=n/e[0],r.uv[1]=o/e[1],g=0;g<3;++g)r.dataCoordinate[g]=this._field[g].get(r.index[0],r.index[1]);return r},S.update=function(t){t=t||{},this.dirty=!0,"contourWidth"in t&&(this.contourWidth=F(t.contourWidth,Number)),"showContour"in t&&(this.showContour=F(t.showContour,Boolean)),"showSurface"in t&&(this.showSurface=!!t.showSurface),"contourTint"in t&&(this.contourTint=F(t.contourTint,Boolean)),"contourColor"in t&&(this.contourColor=B(t.contourColor)),"contourProject"in t&&(this.contourProject=F(t.contourProject,function(t){return F(t,Boolean)})),"surfaceProject"in t&&(this.surfaceProject=t.surfaceProject),"dynamicColor"in t&&(this.dynamicColor=B(t.dynamicColor)),"dynamicTint"in t&&(this.dynamicTint=F(t.dynamicTint,Number)),"dynamicWidth"in t&&(this.dynamicWidth=F(t.dynamicWidth,Number)),"opacity"in t&&(this.opacity=t.opacity),"colorBounds"in t&&(this.colorBounds=t.colorBounds),"vertexColor"in t&&(this.vertexColor=t.vertexColor?1:0);var e=t.field||t.coords&&t.coords[2]||null,r=!1;if(e||(e=this._field[2].shape[0]||this._field[2].shape[2]?this._field[2].lo(1,1).hi(this._field[2].shape[0]-2,this._field[2].shape[1]-2):this._field[2].hi(0,0)),"field"in t||"coords"in t){var i=(e.shape[0]+2)*(e.shape[1]+2);i>this._field[2].data.length&&(s.freeFloat(this._field[2].data),this._field[2].data=s.mallocFloat(n.nextPow2(i))),this._field[2]=f(this._field[2].data,[e.shape[0]+2,e.shape[1]+2]),N(this._field[2],e),this.shape=e.shape.slice();for(var a=this.shape,o=0;o<2;++o)this._field[2].size>this._field[o].data.length&&(s.freeFloat(this._field[o].data),this._field[o].data=s.mallocFloat(this._field[2].size)),this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2]);if(t.coords){var d=t.coords;if(!Array.isArray(d)||3!==d.length)throw new Error("gl-surface: invalid coordinates for x/y");for(o=0;o<2;++o){var p=d[o];for(x=0;x<2;++x)if(p.shape[x]!==a[x])throw new Error("gl-surface: coords have incorrect shape");N(this._field[o],p)}}else if(t.ticks){var m=t.ticks;if(!Array.isArray(m)||2!==m.length)throw new Error("gl-surface: invalid ticks");for(o=0;o<2;++o){var g=m[o];if((Array.isArray(g)||g.length)&&(g=f(g)),g.shape[0]!==a[o])throw new Error("gl-surface: invalid tick length");var y=f(g.data,a);y.stride[o]=g.stride[0],y.stride[1^o]=0,N(this._field[o],y)}}else{for(o=0;o<2;++o){var b=[0,0];b[o]=1,this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2],b,0)}this._field[0].set(0,0,0);for(var x=0;x<a[0];++x)this._field[0].set(x+1,0,x);for(this._field[0].set(a[0]+1,0,a[0]-1),this._field[1].set(0,0,0),x=0;x<a[1];++x)this._field[1].set(0,x+1,x);this._field[1].set(0,a[1]+1,a[1]-1)}var _=this._field,w=f(s.mallocFloat(3*_[2].size*2),[3,a[0]+2,a[1]+2,2]);for(o=0;o<3;++o)v(w.pick(o),_[o],"mirror");var M=f(s.mallocFloat(3*_[2].size),[a[0]+2,a[1]+2,3]);for(o=0;o<a[0]+2;++o)for(x=0;x<a[1]+2;++x){var A=w.get(0,o,x,0),E=w.get(0,o,x,1),S=w.get(1,o,x,0),L=w.get(1,o,x,1),C=w.get(2,o,x,0),P=w.get(2,o,x,1),z=S*P-L*C,O=C*E-P*A,D=A*L-E*S,I=Math.sqrt(z*z+O*O+D*D);I<1e-8?(I=Math.max(Math.abs(z),Math.abs(O),Math.abs(D)))<1e-8?(D=1,O=z=0,I=1):I=1/I:I=1/Math.sqrt(I),M.set(o,x,0,z*I),M.set(o,x,1,O*I),M.set(o,x,2,D*I)}s.free(w.data);var R=[1/0,1/0,1/0],j=[-1/0,-1/0,-1/0],U=1/0,V=-1/0,q=(a[0]-1)*(a[1]-1)*6,H=s.mallocFloat(n.nextPow2(10*q)),G=0,Y=0;for(o=0;o<a[0]-1;++o)t:for(x=0;x<a[1]-1;++x){for(var W=0;W<2;++W)for(var X=0;X<2;++X)for(var Z=0;Z<3;++Z){var J=this._field[Z].get(1+o+W,1+x+X);if(isNaN(J)||!isFinite(J))continue t}for(Z=0;Z<6;++Z){var K=o+k[Z][0],Q=x+k[Z][1],$=this._field[0].get(K+1,Q+1),tt=this._field[1].get(K+1,Q+1),et=J=this._field[2].get(K+1,Q+1);z=M.get(K+1,Q+1,0),O=M.get(K+1,Q+1,1),D=M.get(K+1,Q+1,2),t.intensity&&(et=t.intensity.get(K,Q)),H[G++]=K,H[G++]=Q,H[G++]=$,H[G++]=tt,H[G++]=J,H[G++]=0,H[G++]=et,H[G++]=z,H[G++]=O,H[G++]=D,R[0]=Math.min(R[0],$),R[1]=Math.min(R[1],tt),R[2]=Math.min(R[2],J),U=Math.min(U,et),j[0]=Math.max(j[0],$),j[1]=Math.max(j[1],tt),j[2]=Math.max(j[2],J),V=Math.max(V,et),Y+=1}}for(t.intensityBounds&&(U=+t.intensityBounds[0],V=+t.intensityBounds[1]),o=6;o<G;o+=10)H[o]=(H[o]-U)/(V-U);this._vertexCount=Y,this._coordinateBuffer.update(H.subarray(0,G)),s.freeFloat(H),s.free(M.data),this.bounds=[R,j],this.intensity=t.intensity||this._field[2],this.intensityBounds[0]===U&&this.intensityBounds[1]===V||(r=!0),this.intensityBounds=[U,V]}if("levels"in t){var rt=t.levels;for(rt=Array.isArray(rt[0])?rt.slice():[[],[],rt],o=0;o<3;++o)rt[o]=rt[o].slice(),rt.sort(function(t,e){return t-e});t:for(o=0;o<3;++o){if(rt[o].length!==this.contourLevels[o].length){r=!0;break}for(x=0;x<rt[o].length;++x)if(rt[o][x]!==this.contourLevels[o][x]){r=!0;break t}}this.contourLevels=rt}if(r){_=this._field,a=this.shape;for(var nt=[],it=0;it<3;++it){rt=this.contourLevels[it];var at=[],ot=[],st=[0,0,0];for(o=0;o<rt.length;++o){var lt=h(this._field[it],rt[o]);at.push(nt.length/5|0),Y=0;t:for(x=0;x<lt.cells.length;++x){var ct=lt.cells[x];for(Z=0;Z<2;++Z){var ut=lt.positions[ct[Z]],ft=ut[0],ht=0|Math.floor(ft),dt=ft-ht,pt=ut[1],mt=0|Math.floor(pt),vt=pt-mt,gt=!1;e:for(var yt=0;yt<3;++yt){st[yt]=0;var bt=(it+yt+1)%3;for(W=0;W<2;++W){var xt=W?dt:1-dt;for(K=0|Math.min(Math.max(ht+W,0),a[0]),X=0;X<2;++X){var _t=X?vt:1-vt;if(Q=0|Math.min(Math.max(mt+X,0),a[1]),J=yt<2?this._field[bt].get(K,Q):(this.intensity.get(K,Q)-this.intensityBounds[0])/(this.intensityBounds[1]-this.intensityBounds[0]),!isFinite(J)||isNaN(J)){gt=!0;break e}var wt=xt*_t;st[yt]+=wt*J}}}if(gt){if(Z>0){for(var Mt=0;Mt<5;++Mt)nt.pop();Y-=1}continue t}nt.push(st[0],st[1],ut[0],ut[1],st[2]),Y+=1}}ot.push(Y)}this._contourOffsets[it]=at,this._contourCounts[it]=ot}var kt=s.mallocFloat(nt.length);for(o=0;o<nt.length;++o)kt[o]=nt[o];this._contourBuffer.update(kt),s.freeFloat(kt)}t.colormap&&this._colorMap.setPixels(function(t){var e=u([l({colormap:t,nshades:T,format:"rgba"}).map(function(t){return[t[0],t[1],t[2],255*t[3]]})]);return c.divseq(e,255),e}(t.colormap))},S.dispose=function(){this._shader.dispose(),this._vao.dispose(),this._coordinateBuffer.dispose(),this._colorMap.dispose(),this._contourBuffer.dispose(),this._contourVAO.dispose(),this._contourShader.dispose(),this._contourPickShader.dispose(),this._dynamicBuffer.dispose(),this._dynamicVAO.dispose();for(var t=0;t<3;++t)s.freeFloat(this._field[t].data)},S.highlight=function(t){if(!t)return this._dynamicCounts=[0,0,0],this.dyanamicLevel=[NaN,NaN,NaN],void(this.highlightLevel=[-1,-1,-1]);for(var e=0;e<3;++e)this.enableHighlight[e]?this.highlightLevel[e]=t.level[e]:this.highlightLevel[e]=-1;var r;if(r=this.snapToData?t.dataCoordinate:t.position,this.enableDynamic[0]&&r[0]!==this.dynamicLevel[0]||this.enableDynamic[1]&&r[1]!==this.dynamicLevel[1]||this.enableDynamic[2]&&r[2]!==this.dynamicLevel[2]){for(var n=0,i=this.shape,a=s.mallocFloat(12*i[0]*i[1]),o=0;o<3;++o)if(this.enableDynamic[o]){this.dynamicLevel[o]=r[o];var l=(o+1)%3,c=(o+2)%3,u=this._field[o],f=this._field[l],d=this._field[c],p=(this.intensity,h(u,r[o])),m=p.cells,v=p.positions;for(this._dynamicOffsets[o]=n,e=0;e<m.length;++e)for(var g=m[e],y=0;y<2;++y){var b=v[g[y]],x=+b[0],_=0|x,w=0|Math.min(_+1,i[0]),M=x-_,k=1-M,A=+b[1],T=0|A,E=0|Math.min(T+1,i[1]),S=A-T,L=1-S,C=k*L,P=k*S,z=M*L,O=M*S,D=C*f.get(_,T)+P*f.get(_,E)+z*f.get(w,T)+O*f.get(w,E),I=C*d.get(_,T)+P*d.get(_,E)+z*d.get(w,T)+O*d.get(w,E);if(isNaN(D)||isNaN(I)){y&&(n-=1);break}a[2*n+0]=D,a[2*n+1]=I,n+=1}this._dynamicCounts[o]=n-this._dynamicOffsets[o]}else this.dynamicLevel[o]=NaN,this._dynamicCounts[o]=0;this._dynamicBuffer.update(a.subarray(0,2*n)),s.freeFloat(a)}}},{"./lib/shaders":230,"binary-search-bounds":70,"bit-twiddle":71,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-texture2d":233,"gl-vao":237,ndarray:439,"ndarray-gradient":430,"ndarray-ops":433,"ndarray-pack":434,"surface-nets":520,"typedarray-pool":534}],233:[function(t,e,r){"use strict";var n=t("ndarray"),i=t("ndarray-ops"),a=t("typedarray-pool");e.exports=function(t){if(arguments.length<=1)throw new Error("gl-texture2d: Missing arguments for texture2d constructor");o||function(t){o=[t.LINEAR,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_NEAREST],s=[t.NEAREST,t.LINEAR,t.NEAREST_MIPMAP_NEAREST,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_LINEAR],l=[t.REPEAT,t.CLAMP_TO_EDGE,t.MIRRORED_REPEAT]}(t);if("number"==typeof arguments[1])return v(t,arguments[1],arguments[2],arguments[3]||t.RGBA,arguments[4]||t.UNSIGNED_BYTE);if(Array.isArray(arguments[1]))return v(t,0|arguments[1][0],0|arguments[1][1],arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if("object"==typeof arguments[1]){var e=arguments[1],r=c(e)?e:e.raw;if(r)return function(t,e,r,n,i,a){var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,i,i,a,e),new h(t,o,r,n,i,a)}(t,r,0|e.width,0|e.height,arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if(e.shape&&e.data&&e.stride)return function(t,e){var r=e.dtype,o=e.shape.slice(),s=t.getParameter(t.MAX_TEXTURE_SIZE);if(o[0]<0||o[0]>s||o[1]<0||o[1]>s)throw new Error("gl-texture2d: Invalid texture size");var l=p(o,e.stride.slice()),c=0;"float32"===r?c=t.FLOAT:"float64"===r?(c=t.FLOAT,l=!1,r="float32"):"uint8"===r?c=t.UNSIGNED_BYTE:(c=t.UNSIGNED_BYTE,l=!1,r="uint8");var f,d,v=0;if(2===o.length)v=t.LUMINANCE,o=[o[0],o[1],1],e=n(e.data,o,[e.stride[0],e.stride[1],1],e.offset);else{if(3!==o.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===o[2])v=t.ALPHA;else if(2===o[2])v=t.LUMINANCE_ALPHA;else if(3===o[2])v=t.RGB;else{if(4!==o[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}}c!==t.FLOAT||t.getExtension("OES_texture_float")||(c=t.UNSIGNED_BYTE,l=!1);var g=e.size;if(l)f=0===e.offset&&e.data.length===g?e.data:e.data.subarray(e.offset,e.offset+g);else{var y=[o[2],o[2]*o[0],1];d=a.malloc(g,r);var b=n(d,o,y,0);"float32"!==r&&"float64"!==r||c!==t.UNSIGNED_BYTE?i.assign(b,e):u(b,e),f=d.subarray(0,g)}var x=m(t);t.texImage2D(t.TEXTURE_2D,0,v,o[0],o[1],0,v,c,f),l||a.free(d);return new h(t,x,o[0],o[1],v,c)}(t,e)}throw new Error("gl-texture2d: Invalid arguments for texture2d constructor")};var o=null,s=null,l=null;function c(t){return"undefined"!=typeof HTMLCanvasElement&&t instanceof HTMLCanvasElement||"undefined"!=typeof HTMLImageElement&&t instanceof HTMLImageElement||"undefined"!=typeof HTMLVideoElement&&t instanceof HTMLVideoElement||"undefined"!=typeof ImageData&&t instanceof ImageData}var u=function(t,e){i.muls(t,e,255)};function f(t,e,r){var n=t.gl,i=n.getParameter(n.MAX_TEXTURE_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-texture2d: Invalid texture size");return t._shape=[e,r],t.bind(),n.texImage2D(n.TEXTURE_2D,0,t.format,e,r,0,t.format,t.type,null),t._mipLevels=[0],t}function h(t,e,r,n,i,a){this.gl=t,this.handle=e,this.format=i,this.type=a,this._shape=[r,n],this._mipLevels=[0],this._magFilter=t.NEAREST,this._minFilter=t.NEAREST,this._wrapS=t.CLAMP_TO_EDGE,this._wrapT=t.CLAMP_TO_EDGE,this._anisoSamples=1;var o=this,s=[this._wrapS,this._wrapT];Object.defineProperties(s,[{get:function(){return o._wrapS},set:function(t){return o.wrapS=t}},{get:function(){return o._wrapT},set:function(t){return o.wrapT=t}}]),this._wrapVector=s;var l=[this._shape[0],this._shape[1]];Object.defineProperties(l,[{get:function(){return o._shape[0]},set:function(t){return o.width=t}},{get:function(){return o._shape[1]},set:function(t){return o.height=t}}]),this._shapeVector=l}var d=h.prototype;function p(t,e){return 3===t.length?1===e[2]&&e[1]===t[0]*t[2]&&e[0]===t[2]:1===e[0]&&e[1]===t[0]}function m(t){var e=t.createTexture();return t.bindTexture(t.TEXTURE_2D,e),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),e}function v(t,e,r,n,i){var a=t.getParameter(t.MAX_TEXTURE_SIZE);if(e<0||e>a||r<0||r>a)throw new Error("gl-texture2d: Invalid texture shape");if(i===t.FLOAT&&!t.getExtension("OES_texture_float"))throw new Error("gl-texture2d: Floating point textures not supported on this platform");var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,n,e,r,0,n,i,null),new h(t,o,e,r,n,i)}Object.defineProperties(d,{minFilter:{get:function(){return this._minFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MIN_FILTER,t),this._minFilter=t}},magFilter:{get:function(){return this._magFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MAG_FILTER,t),this._magFilter=t}},mipSamples:{get:function(){return this._anisoSamples},set:function(t){var e=this._anisoSamples;if(this._anisoSamples=0|Math.max(t,1),e!==this._anisoSamples){var r=this.gl.getExtension("EXT_texture_filter_anisotropic");r&&this.gl.texParameterf(this.gl.TEXTURE_2D,r.TEXTURE_MAX_ANISOTROPY_EXT,this._anisoSamples)}return this._anisoSamples}},wrapS:{get:function(){return this._wrapS},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_S,t),this._wrapS=t}},wrapT:{get:function(){return this._wrapT},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_T,t),this._wrapT=t}},wrap:{get:function(){return this._wrapVector},set:function(t){if(Array.isArray(t)||(t=[t,t]),2!==t.length)throw new Error("gl-texture2d: Must specify wrap mode for rows and columns");for(var e=0;e<2;++e)if(l.indexOf(t[e])<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);this._wrapS=t[0],this._wrapT=t[1];var r=this.gl;return this.bind(),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_S,this._wrapS),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_T,this._wrapT),t}},shape:{get:function(){return this._shapeVector},set:function(t){if(Array.isArray(t)){if(2!==t.length)throw new Error("gl-texture2d: Invalid texture shape")}else t=[0|t,0|t];return f(this,0|t[0],0|t[1]),[0|t[0],0|t[1]]}},width:{get:function(){return this._shape[0]},set:function(t){return f(this,t|=0,this._shape[1]),t}},height:{get:function(){return this._shape[1]},set:function(t){return t|=0,f(this,this._shape[0],t),t}}}),d.bind=function(t){var e=this.gl;return void 0!==t&&e.activeTexture(e.TEXTURE0+(0|t)),e.bindTexture(e.TEXTURE_2D,this.handle),void 0!==t?0|t:e.getParameter(e.ACTIVE_TEXTURE)-e.TEXTURE0},d.dispose=function(){this.gl.deleteTexture(this.handle)},d.generateMipmap=function(){this.bind(),this.gl.generateMipmap(this.gl.TEXTURE_2D);for(var t=Math.min(this._shape[0],this._shape[1]),e=0;t>0;++e,t>>>=1)this._mipLevels.indexOf(e)<0&&this._mipLevels.push(e)},d.setPixels=function(t,e,r,o){var s=this.gl;this.bind(),Array.isArray(e)?(o=r,r=0|e[1],e=0|e[0]):(e=e||0,r=r||0),o=o||0;var l=c(t)?t:t.raw;if(l){this._mipLevels.indexOf(o)<0?(s.texImage2D(s.TEXTURE_2D,0,this.format,this.format,this.type,l),this._mipLevels.push(o)):s.texSubImage2D(s.TEXTURE_2D,o,e,r,this.format,this.type,l)}else{if(!(t.shape&&t.stride&&t.data))throw new Error("gl-texture2d: Unsupported data type");if(t.shape.length<2||e+t.shape[1]>this._shape[1]>>>o||r+t.shape[0]>this._shape[0]>>>o||e<0||r<0)throw new Error("gl-texture2d: Texture dimensions are out of bounds");!function(t,e,r,o,s,l,c,f){var h=f.dtype,d=f.shape.slice();if(d.length<2||d.length>3)throw new Error("gl-texture2d: Invalid ndarray, must be 2d or 3d");var m=0,v=0,g=p(d,f.stride.slice());"float32"===h?m=t.FLOAT:"float64"===h?(m=t.FLOAT,g=!1,h="float32"):"uint8"===h?m=t.UNSIGNED_BYTE:(m=t.UNSIGNED_BYTE,g=!1,h="uint8");if(2===d.length)v=t.LUMINANCE,d=[d[0],d[1],1],f=n(f.data,d,[f.stride[0],f.stride[1],1],f.offset);else{if(3!==d.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===d[2])v=t.ALPHA;else if(2===d[2])v=t.LUMINANCE_ALPHA;else if(3===d[2])v=t.RGB;else{if(4!==d[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}d[2]}v!==t.LUMINANCE&&v!==t.ALPHA||s!==t.LUMINANCE&&s!==t.ALPHA||(v=s);if(v!==s)throw new Error("gl-texture2d: Incompatible texture format for setPixels");var y=f.size,b=c.indexOf(o)<0;b&&c.push(o);if(m===l&&g)0===f.offset&&f.data.length===y?b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data):b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data.subarray(f.offset,f.offset+y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data.subarray(f.offset,f.offset+y));else{var x;x=l===t.FLOAT?a.mallocFloat32(y):a.mallocUint8(y);var _=n(x,d,[d[2],d[2]*d[0],1]);m===t.FLOAT&&l===t.UNSIGNED_BYTE?u(_,f):i.assign(_,f),b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,x.subarray(0,y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,x.subarray(0,y)),l===t.FLOAT?a.freeFloat32(x):a.freeUint8(x)}}(s,e,r,o,this.format,this.type,this._mipLevels,t)}}},{ndarray:439,"ndarray-ops":433,"typedarray-pool":534}],234:[function(t,e,r){"use strict";e.exports=function(t,e,r){e?e.bind():t.bindBuffer(t.ELEMENT_ARRAY_BUFFER,null);var n=0|t.getParameter(t.MAX_VERTEX_ATTRIBS);if(r){if(r.length>n)throw new Error("gl-vao: Too many vertex attributes");for(var i=0;i<r.length;++i){var a=r[i];if(a.buffer){var o=a.buffer,s=a.size||4,l=a.type||t.FLOAT,c=!!a.normalized,u=a.stride||0,f=a.offset||0;o.bind(),t.enableVertexAttribArray(i),t.vertexAttribPointer(i,s,l,c,u,f)}else{if("number"==typeof a)t.vertexAttrib1f(i,a);else if(1===a.length)t.vertexAttrib1f(i,a[0]);else if(2===a.length)t.vertexAttrib2f(i,a[0],a[1]);else if(3===a.length)t.vertexAttrib3f(i,a[0],a[1],a[2]);else{if(4!==a.length)throw new Error("gl-vao: Invalid vertex attribute");t.vertexAttrib4f(i,a[0],a[1],a[2],a[3])}t.disableVertexAttribArray(i)}}for(;i<n;++i)t.disableVertexAttribArray(i)}else for(t.bindBuffer(t.ARRAY_BUFFER,null),i=0;i<n;++i)t.disableVertexAttribArray(i)}},{}],235:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t){this.gl=t,this._elements=null,this._attributes=null,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(){n(this.gl,this._elements,this._attributes)},i.prototype.update=function(t,e,r){this._elements=e,this._attributes=t,this._elementsType=r||this.gl.UNSIGNED_SHORT},i.prototype.dispose=function(){},i.prototype.unbind=function(){},i.prototype.draw=function(t,e,r){r=r||0;var n=this.gl;this._elements?n.drawElements(t,e,this._elementsType,r):n.drawArrays(t,r,e)},e.exports=function(t){return new i(t)}},{"./do-bind.js":234}],236:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t,e,r,n,i,a){this.location=t,this.dimension=e,this.a=r,this.b=n,this.c=i,this.d=a}function a(t,e,r){this.gl=t,this._ext=e,this.handle=r,this._attribs=[],this._useElements=!1,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(t){switch(this.dimension){case 1:t.vertexAttrib1f(this.location,this.a);break;case 2:t.vertexAttrib2f(this.location,this.a,this.b);break;case 3:t.vertexAttrib3f(this.location,this.a,this.b,this.c);break;case 4:t.vertexAttrib4f(this.location,this.a,this.b,this.c,this.d)}},a.prototype.bind=function(){this._ext.bindVertexArrayOES(this.handle);for(var t=0;t<this._attribs.length;++t)this._attribs[t].bind(this.gl)},a.prototype.unbind=function(){this._ext.bindVertexArrayOES(null)},a.prototype.dispose=function(){this._ext.deleteVertexArrayOES(this.handle)},a.prototype.update=function(t,e,r){if(this.bind(),n(this.gl,e,t),this.unbind(),this._attribs.length=0,t)for(var a=0;a<t.length;++a){var o=t[a];"number"==typeof 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float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\n\nvoid main() {\n    gl_FragColor = u_color;\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, step(32767.0, a_pos.x), 1);\n}\n"},fill:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_FragColor = color * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n}\n"},circle:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    float t = smoothstep(1.0 - max(blur, v_antialiasblur), 1.0, length(v_extrude));\n    gl_FragColor = color * (1.0 - t) * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform bool u_scale_with_map;\nuniform vec2 u_extrude_scale;\nuniform float u_devicepixelratio;\n\nattribute vec2 a_pos;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define mediump float radius\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main(void) {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize mediump float radius\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    // unencode the extrusion vector that we snuck into the a_pos vector\n    v_extrude = vec2(mod(a_pos, 2.0) * 2.0 - 1.0);\n\n    vec2 extrude = v_extrude * radius * u_extrude_scale;\n    // multiply a_pos by 0.5, since we had it * 2 in order to sneak\n    // in extrusion data\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5), 0, 1);\n\n    if (u_scale_with_map) {\n        gl_Position.xy += extrude;\n    } else {\n        gl_Position.xy += extrude * gl_Position.w;\n    }\n\n    // This is a minimum blur distance that serves as a faux-antialiasing for\n    // the circle. since blur is a ratio of the circle's size and the intent is\n    // to keep the blur at roughly 1px, the two are inversely related.\n    v_antialiasblur = 1.0 / u_devicepixelratio / radius;\n}\n"},line:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform float u_blur;\n\nvarying vec2 v_linewidth;\nvarying vec2 v_normal;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\nuniform mediump float u_blur;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_blur;\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_fade;\nuniform float u_opacity;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float x_a = mod(v_linesofar / u_pattern_size_a.x, 1.0);\n    float x_b = mod(v_linesofar / u_pattern_size_b.x, 1.0);\n    float y_a = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_a.y);\n    float y_b = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_b.y);\n    vec2 pos_a = mix(u_pattern_tl_a, u_pattern_br_a, vec2(x_a, y_a));\n    vec2 pos_b = mix(u_pattern_tl_b, u_pattern_br_b, vec2(x_b, y_b));\n\n    vec4 color = mix(texture2D(u_image, pos_a), texture2D(u_image, pos_b), u_fade);\n\n    alpha *= u_opacity;\n\n    gl_FragColor = color * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n    v_linesofar = a_linesofar;\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linesdfpattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\n\nuniform float u_blur;\nuniform sampler2D u_image;\nuniform float u_sdfgamma;\nuniform float u_mix;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float sdfdist_a = texture2D(u_image, v_tex_a).a;\n    float sdfdist_b = texture2D(u_image, v_tex_b).a;\n    float sdfdist = mix(sdfdist_a, sdfdist_b, u_mix);\n    alpha *= smoothstep(0.5 - u_sdfgamma, 0.5 + u_sdfgamma, sdfdist);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform vec2 u_patternscale_a;\nuniform float u_tex_y_a;\nuniform vec2 u_patternscale_b;\nuniform float u_tex_y_b;\nuniform float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    v_tex_a = vec2(a_linesofar * u_patternscale_a.x, normal.y * u_patternscale_a.y + u_tex_y_a);\n    v_tex_b = vec2(a_linesofar * u_patternscale_b.x, normal.y * u_patternscale_b.y + u_tex_y_b);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},outline:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_pos;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    gl_FragColor = outline_color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos;\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},outlinepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    // find distance to outline for alpha interpolation\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    \n\n    gl_FragColor = mix(color1, color2, u_mix) * alpha * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},pattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    gl_FragColor = mix(color1, color2, u_mix) * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n}\n"},raster:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity0;\nuniform float u_opacity1;\nuniform sampler2D u_image0;\nuniform sampler2D u_image1;\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nuniform float u_brightness_low;\nuniform float u_brightness_high;\n\nuniform float u_saturation_factor;\nuniform float u_contrast_factor;\nuniform vec3 u_spin_weights;\n\nvoid main() {\n\n    // read and cross-fade colors from the main and parent tiles\n    vec4 color0 = texture2D(u_image0, v_pos0);\n    vec4 color1 = texture2D(u_image1, v_pos1);\n    vec4 color = color0 * u_opacity0 + color1 * u_opacity1;\n    vec3 rgb = color.rgb;\n\n    // spin\n    rgb = vec3(\n        dot(rgb, u_spin_weights.xyz),\n        dot(rgb, u_spin_weights.zxy),\n        dot(rgb, u_spin_weights.yzx));\n\n    // saturation\n    float average = (color.r + color.g + color.b) / 3.0;\n    rgb += (average - rgb) * u_saturation_factor;\n\n    // contrast\n    rgb = (rgb - 0.5) * u_contrast_factor + 0.5;\n\n    // brightness\n    vec3 u_high_vec = vec3(u_brightness_low, u_brightness_low, u_brightness_low);\n    vec3 u_low_vec = vec3(u_brightness_high, u_brightness_high, u_brightness_high);\n\n    gl_FragColor = vec4(mix(u_high_vec, u_low_vec, rgb), color.a);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_tl_parent;\nuniform float u_scale_parent;\nuniform float u_buffer_scale;\n\nattribute vec2 a_pos;\nattribute vec2 a_texture_pos;\n\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos0 = (((a_texture_pos / 32767.0) - 0.5) / u_buffer_scale ) + 0.5;\n    v_pos1 = (v_pos0 * u_scale_parent) + u_tl_parent;\n}\n"},icon:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp float u_opacity;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    lowp float alpha = texture2D(u_fadetexture, v_fade_tex).a * u_opacity;\n    gl_FragColor = texture2D(u_texture, v_tex) * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n    if (u_rotate_with_map) {\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    } else {\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},sdf:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform lowp float u_buffer;\nuniform lowp float u_gamma;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    lowp float dist = texture2D(u_texture, v_tex).a;\n    lowp float fade_alpha = texture2D(u_fadetexture, v_fade_tex).a;\n    lowp float gamma = u_gamma * v_gamma_scale;\n    lowp float alpha = smoothstep(u_buffer - gamma, u_buffer + gamma, dist) * fade_alpha;\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nconst float PI = 3.141592653589793;\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform bool u_pitch_with_map;\nuniform mediump float u_pitch;\nuniform mediump float u_bearing;\nuniform mediump float u_aspect_ratio;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    // pitch-alignment: map\n    // rotation-alignment: map | viewport\n    if (u_pitch_with_map) {\n        lowp float angle = u_rotate_with_map ? (a_data[1] / 256.0 * 2.0 * PI) : u_bearing;\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, asin, -1.0 * asin, acos);\n        vec2 offset = RotationMatrix * a_offset;\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: map\n    } else if (u_rotate_with_map) {\n        // foreshortening factor to apply on pitched maps\n        // as a label goes from horizontal <=> vertical in angle\n        // it goes from 0% foreshortening to up to around 70% foreshortening\n        lowp float pitchfactor = 1.0 - cos(u_pitch * sin(u_pitch * 0.75));\n\n        lowp float lineangle = a_data[1] / 256.0 * 2.0 * PI;\n\n        // use the lineangle to position points a,b along the line\n        // project the points and calculate the label angle in projected space\n        // this calculation allows labels to be rendered unskewed on pitched maps\n        vec4 a = u_matrix * vec4(a_pos, 0, 1);\n        vec4 b = u_matrix * vec4(a_pos + vec2(cos(lineangle),sin(lineangle)), 0, 1);\n        lowp float angle = atan((b[1]/b[3] - a[1]/a[3])/u_aspect_ratio, b[0]/b[3] - a[0]/a[3]);\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, -1.0 * asin, asin, acos);\n\n        vec2 offset = RotationMatrix * (vec2((1.0-pitchfactor)+(pitchfactor*cos(angle*2.0)), 1.0) * a_offset);\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: viewport\n    } else {\n        vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_gamma_scale = (gl_Position.w - 0.5);\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},collisionbox:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_zoom;\nuniform float u_maxzoom;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n\n    float alpha = 0.5;\n\n    gl_FragColor = vec4(0.0, 1.0, 0.0, 1.0) * alpha;\n\n    if (v_placement_zoom > u_zoom) {\n        gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0) * alpha;\n    }\n\n    if (u_zoom >= v_max_zoom) {\n        gl_FragColor = vec4(0.0, 0.0, 0.0, 1.0) * alpha * 0.25;\n    }\n\n    if (v_placement_zoom >= u_maxzoom) {\n        gl_FragColor = vec4(0.0, 0.0, 1.0, 1.0) * alpha * 0.2;\n    }\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_extrude;\nattribute vec2 a_data;\n\nuniform mat4 u_matrix;\nuniform float u_scale;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos + a_extrude / u_scale, 0.0, 1.0);\n\n    v_max_zoom = a_data.x;\n    v_placement_zoom = a_data.y;\n}\n"}},e.exports.util="float evaluate_zoom_function_1(const vec4 values, const float t) {\n    if (t < 1.0) {\n        return mix(values[0], values[1], t);\n    } else if (t < 2.0) {\n        return mix(values[1], values[2], t - 1.0);\n    } else {\n        return mix(values[2], values[3], t - 2.0);\n    }\n}\nvec4 evaluate_zoom_function_4(const vec4 value0, const vec4 value1, const vec4 value2, const vec4 value3, const float t) {\n    if (t < 1.0) {\n        return mix(value0, value1, t);\n    } else if (t < 2.0) {\n        return mix(value1, value2, t - 1.0);\n    } else {\n        return mix(value2, value3, t - 2.0);\n    }\n}\n"},{path:449}],276:[function(t,e,r){"use strict";var n=t("util").format;e.exports=function(t,e){this.message=(t?t+": ":"")+n.apply(n,Array.prototype.slice.call(arguments,2)),null!==e&&void 0!==e&&e.__line__&&(this.line=e.__line__)}},{util:543}],277:[function(t,e,r){"use strict";e.exports=function(t){for(var e=1;e<arguments.length;e++){var r=arguments[e];for(var n in r)t[n]=r[n]}return t}},{}],278:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number?"number":t instanceof String?"string":t instanceof Boolean?"boolean":Array.isArray(t)?"array":null===t?"null":typeof t}},{}],279:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number||t instanceof String||t instanceof Boolean?t.valueOf():t}},{}],280:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("../util/extend");e.exports=function(e){var 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n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate"),o=t("./validate_object"),s=t("./validate_array"),l=t("./validate_number");e.exports=function(t){var e,r=t.valueSpec,c=void 0!==t.value.property||"object"===e,u=void 0===t.value.property||"object"===e,f=o({key:t.key,value:t.value,valueSpec:t.styleSpec.function,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{stops:function(t){var e=[],r=t.value;e=e.concat(s({key:t.key,value:r,valueSpec:t.valueSpec,style:t.style,styleSpec:t.styleSpec,arrayElementValidator:h})),"array"===i(r)&&0===r.length&&e.push(new n(t.key,r,"array must have at least one stop"));return e}}});return t.styleSpec.$version>=8&&(c&&!t.valueSpec["property-function"]?f.push(new n(t.key,t.value,"property functions not supported")):u&&!t.valueSpec["zoom-function"]&&f.push(new n(t.key,t.value,"zoom functions not supported"))),f;function h(t){var s=[],c=t.value,f=t.key;if("array"!==i(c))return[new n(f,c,"array expected, %s 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order"))),s}function d(t){var e=[],r=i(t.value);return"number"!==r&&"string"!==r&&"array"!==r&&e.push(new n(t.key,t.value,"property value must be a number, string or array")),e}}},{"../error/validation_error":276,"../util/get_type":278,"./validate":280,"./validate_array":281,"./validate_number":291,"./validate_object":292}],288:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("./validate_string");e.exports=function(t){var e=t.value,r=t.key,a=i(t);return a.length?a:(-1===e.indexOf("{fontstack}")&&a.push(new n(r,e,'"glyphs" url must include a "{fontstack}" token')),-1===e.indexOf("{range}")&&a.push(new n(r,e,'"glyphs" url must include a "{range}" token')),a)}},{"../error/validation_error":276,"./validate_string":295}],289:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/unbundle_jsonlint"),a=t("./validate_object"),o=t("./validate_filter"),s=t("./validate_paint_property"),l=t("./validate_layout_property"),c=t("../util/extend");e.exports=function(t){var e=[],r=t.value,u=t.key,f=t.style,h=t.styleSpec;r.type||r.ref||e.push(new n(u,r,'either "type" or "ref" is required'));var d,p=i(r.type),m=i(r.ref);if(r.id)for(var v=0;v<t.arrayIndex;v++){var g=f.layers[v];i(g.id)===i(r.id)&&e.push(new n(u,r.id,'duplicate layer id "%s", previously used at line %d',r.id,g.id.__line__))}if("ref"in r)["type","source","source-layer","filter","layout"].forEach(function(t){t in r&&e.push(new n(u,r[t],'"%s" is prohibited for ref layers',t))}),f.layers.forEach(function(t){t.id==m&&(d=t)}),d?d.ref?e.push(new n(u,r.ref,"ref cannot reference another ref layer")):p=i(d.type):e.push(new n(u,r.ref,'ref layer "%s" not found',m));else if("background"!==p)if(r.source){var y=f.sources&&f.sources[r.source];y?"vector"==y.type&&"raster"==p?e.push(new n(u,r.source,'layer "%s" requires a raster source',r.id)):"raster"==y.type&&"raster"!=p?e.push(new n(u,r.source,'layer "%s" requires a vector source',r.id)):"vector"!=y.type||r["source-layer"]||e.push(new n(u,r,'layer "%s" must specify a "source-layer"',r.id)):e.push(new n(u,r.source,'source "%s" not found',r.source))}else e.push(new n(u,r,'missing required property "source"'));return e=e.concat(a({key:u,value:r,valueSpec:h.layer,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{filter:o,layout:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return l(c({layerType:p},t))}}})},paint:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return s(c({layerType:p},t))}}})}}}))}},{"../error/validation_error":276,"../util/extend":277,"../util/unbundle_jsonlint":279,"./validate_filter":286,"./validate_layout_property":290,"./validate_object":292,"./validate_paint_property":293}],290:[function(t,e,r){"use strict";var n=t("./validate"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.style,a=t.styleSpec,o=t.value,s=t.objectKey,l=a["layout_"+t.layerType];if(t.valueSpec||l[s]){var c=[];return"symbol"===t.layerType&&("icon-image"===s&&r&&!r.sprite?c.push(new i(e,o,'use of "icon-image" requires a style "sprite" property')):"text-field"===s&&r&&!r.glyphs&&c.push(new i(e,o,'use of "text-field" requires a style "glyphs" property'))),c.concat(n({key:t.key,value:o,valueSpec:t.valueSpec||l[s],style:r,styleSpec:a}))}return[new i(e,o,'unknown property "%s"',s)]}},{"../error/validation_error":276,"./validate":280}],291:[function(t,e,r){"use strict";var n=t("../util/get_type"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.value,a=t.valueSpec,o=n(r);return"number"!==o?[new i(e,r,"number expected, %s found",o)]:"minimum"in a&&r<a.minimum?[new i(e,r,"%s is less than the minimum value %s",r,a.minimum)]:"maximum"in a&&r>a.maximum?[new i(e,r,"%s is greater than the maximum value %s",r,a.maximum)]:[]}},{"../error/validation_error":276,"../util/get_type":278}],292:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate");e.exports=function(t){var e=t.key,r=t.value,o=t.valueSpec,s=t.objectElementValidators||{},l=t.style,c=t.styleSpec,u=[],f=i(r);if("object"!==f)return[new n(e,r,"object expected, %s found",f)];for(var h in r){var d=h.split(".")[0],p=o&&(o[d]||o["*"]),m=s[d]||s["*"];p||m?u=u.concat((m||a)({key:(e?e+".":e)+h,value:r[h],valueSpec:p,style:l,styleSpec:c,object:r,objectKey:h})):""!==e&&1!==e.split(".").length&&u.push(new n(e,r[h],'unknown property 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v=t.childLayers[m],g=n[v.id],y=p.name;l("a_"===p.name.slice(0,2));var b,x=p.name.slice(2);if(g.fragmentPragmas.initialize[x]="",v.isPaintValueFeatureConstant(p.paintProperty))g.uniforms.push(p),g.fragmentPragmas.define[x]=g.vertexPragmas.define[x]=["uniform",c,u,y].join(" ")+";",g.fragmentPragmas.initialize[x]=g.vertexPragmas.initialize[x]=[c,u,x,"=",y].join(" ")+";\n";else if(v.isPaintValueZoomConstant(p.paintProperty)){g.attributes.push(o.extend({},p,{name:y})),b=["varying",c,u,x].join(" ")+";\n";var _=[g.fragmentPragmas.define[x],"attribute",c,u,y].join(" ")+";\n";g.fragmentPragmas.define[x]=b,g.vertexPragmas.define[x]=b+_,g.vertexPragmas.initialize[x]=[x,"=",y,"/",p.multiplier.toFixed(1)].join(" ")+";\n"}else{for(var w="u_"+y.slice(2)+"_t",M=v.getPaintValueStopZoomLevels(p.paintProperty),k=0;k<M.length&&M[k]<t.zoom;)k++;for(var A=Math.max(0,Math.min(M.length-4,k-2)),T=[],E=0;E<4;E++)T.push(M[Math.min(A+E,M.length-1)]);b=["varying",c,u,x].join(" 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a(t,{layoutVertexArrayType:i.layoutVertexArrayType.serialize(),elementArrayType:i.elementArrayType&&i.elementArrayType.serialize(),elementArrayType2:i.elementArrayType2&&i.elementArrayType2.serialize(),paintVertexArrayTypes:o})})})}}e.exports=c,c.create=function(e){return new({fill:t("./bucket/fill_bucket"),line:t("./bucket/line_bucket"),circle:t("./bucket/circle_bucket"),symbol:t("./bucket/symbol_bucket")}[e.layer.type])(e)},c.EXTENT=8192,c.prototype.populateArrays=function(){this.createArrays(),this.recalculateStyleLayers();for(var t=0;t<this.features.length;t++)this.addFeature(this.features[t]);this.trimArrays()},c.prototype.prepareArrayGroup=function(t,e){var r=this.arrayGroups[t],n=r.length&&r[r.length-1];return n&&n.hasCapacityFor(e)||((n=new i({layoutVertexArrayType:this.programInterfaces[t].layoutVertexArrayType,elementArrayType:this.programInterfaces[t].elementArrayType,elementArrayType2:this.programInterfaces[t].elementArrayType2,paintVertexArrayTypes:this.paintVertexArrayTypes[t]})).index=r.length,r.push(n)),n},c.prototype.createArrays=function(){for(var t in this.arrayGroups={},this.paintVertexArrayTypes={},this.programInterfaces){this.arrayGroups[t]=[];var e=this.paintVertexArrayTypes[t]={},r=this.paintAttributes[t];for(var n in r)e[n]=new c.VertexArrayType(r[n].attributes)}},c.prototype.destroy=function(t){for(var e in this.bufferGroups)for(var r=this.bufferGroups[e],n=0;n<r.length;n++)r[n].destroy(t)},c.prototype.trimArrays=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)e[r].trim()},c.prototype.isEmpty=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)if(!e[r].isEmpty())return!1;return!0},c.prototype.getTransferables=function(t){for(var e in this.arrayGroups)for(var r=this.arrayGroups[e],n=0;n<r.length;n++)r[n].getTransferables(t)},c.prototype.setUniforms=function(t,e,r,n,i){for(var a=this.paintAttributes[e][n.id].uniforms,o=0;o<a.length;o++){var s=a[o],l=r[s.name];t["uniform"+s.components+"fv"](l,s.getValue(n,i))}},c.prototype.serialize=function(){return{layerId:this.layer.id,zoom:this.zoom,arrays:o.mapObject(this.arrayGroups,function(t){return t.map(function(t){return t.serialize()})}),paintVertexArrayTypes:o.mapObject(this.paintVertexArrayTypes,function(t){return o.mapObject(t,function(t){return t.serialize()})}),childLayerIds:this.childLayers.map(function(t){return t.id})}},c.prototype.createFilter=function(){this.filter||(this.filter=n(this.layer.filter))};var u={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};function f(t,e){return function(r,n,i){if(1===e.length)return t.getValue(r,o.extend({},n,{zoom:e[0]}),i);for(var a=[],s=0;s<e.length;s++){var l=e[s];a.push(t.getValue(r,o.extend({},n,{zoom:l}),i)[0])}return a}}function h(t,e){return function(r,n){var i=r.getPaintInterpolationT(t.paintProperty,n.zoom);return[Math.max(0,Math.min(4,i-e))]}}c.prototype.recalculateStyleLayers=function(){for(var t=0;t<this.childLayers.length;t++)this.childLayers[t].recalculate(this.zoom,u)},c.prototype.populatePaintArrays=function(t,e,r,n,i){for(var a=0;a<this.childLayers.length;a++)for(var o=this.childLayers[a],s=this.arrayGroups[t],l=n.index;l<s.length;l++){var c=s[l],u=c.layoutVertexArray.length,f=c.paintVertexArrays[o.id];f.resize(u);for(var h=this.paintAttributes[t][o.id].attributes,d=0;d<h.length;d++)for(var p=h[d],m=p.getValue(o,e,r),v=p.multiplier||1,g=p.components||1,y=l===n.index?i:0;y<u;y++)for(var b=f.get(y),x=0;x<g;x++){b[g>1?p.name+x:p.name]=m[x]*v}}},c.VertexArrayType=function(t){return new s({members:t,alignment:4})},c.ElementArrayType=function(t){return new s({members:[{type:"Uint16",name:"vertices",components:t||3}]})}},{"../util/struct_array":412,"../util/util":414,"./array_group":300,"./bucket/circle_bucket":302,"./bucket/fill_bucket":303,"./bucket/line_bucket":304,"./bucket/symbol_bucket":305,"./buffer_group":307,assert:51,"feature-filter":141}],302:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT;function s(){n.apply(this,arguments)}e.exports=s,s.prototype=i.inherit(n,{}),s.prototype.addCircleVertex=function(t,e,r,n,i){return t.emplaceBack(2*e+(n+1)/2,2*r+(i+1)/2)},s.prototype.programInterfaces={circle:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType,paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("circle-color",e,r)},multiplier:255,paintProperty:"circle-color"},{name:"a_radius",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-radius",e,r)]},multiplier:10,paintProperty:"circle-radius"},{name:"a_blur",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-blur",e,r)]},multiplier:10,paintProperty:"circle-blur"},{name:"a_opacity",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-opacity",e,r)]},multiplier:255,paintProperty:"circle-opacity"}]}},s.prototype.addFeature=function(t){for(var e={zoom:this.zoom},r=a(t),n=this.prepareArrayGroup("circle",0),i=n.layoutVertexArray.length,s=0;s<r.length;s++)for(var l=0;l<r[s].length;l++){var c=r[s][l].x,u=r[s][l].y;if(!(c<0||c>=o||u<0||u>=o)){var f=this.prepareArrayGroup("circle",4),h=f.layoutVertexArray,d=this.addCircleVertex(h,c,u,-1,-1);this.addCircleVertex(h,c,u,1,-1),this.addCircleVertex(h,c,u,1,1),this.addCircleVertex(h,c,u,-1,1),f.elementArray.emplaceBack(d,d+1,d+2),f.elementArray.emplaceBack(d,d+3,d+2)}}this.populatePaintArrays("circle",e,t.properties,n,i)}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],303:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=t("earcut"),s=t("../../util/classify_rings");function l(){n.apply(this,arguments)}e.exports=l,l.prototype=i.inherit(n,{}),l.prototype.programInterfaces={fill:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType(1),elementArrayType2:new n.ElementArrayType(2),paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-color",e,r)},multiplier:255,paintProperty:"fill-color"},{name:"a_outline_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-outline-color",e,r)},multiplier:255,paintProperty:"fill-outline-color"},{name:"a_opacity",components:1,type:"Uint8",getValue:function(t,e,r){return[t.getPaintValue("fill-opacity",e,r)]},multiplier:255,paintProperty:"fill-opacity"}]}},l.prototype.addFeature=function(t){for(var e=a(t),r=s(e,500),n=this.prepareArrayGroup("fill",0),i=n.layoutVertexArray.length,o=0;o<r.length;o++)this.addPolygon(r[o]);this.populatePaintArrays("fill",{zoom:this.zoom},t.properties,n,i)},l.prototype.addPolygon=function(t){for(var e=0,r=0;r<t.length;r++)e+=t[r].length;for(var n=this.prepareArrayGroup("fill",e),i=[],a=[],s=n.layoutVertexArray.length,l=0;l<t.length;l++){var c=t[l];l>0&&a.push(i.length/2);for(var u=0;u<c.length;u++){var f=c[u],h=n.layoutVertexArray.emplaceBack(f.x,f.y);u>=1&&n.elementArray2.emplaceBack(h-1,h),i.push(f.x),i.push(f.y)}}for(var d=o(i,a),p=0;p<d.length;p++)n.elementArray.emplaceBack(d[p]+s)}},{"../../util/classify_rings":402,"../../util/util":414,"../bucket":301,"../load_geometry":309,earcut:135}],304:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT,s=Math.cos(Math.PI/180*37.5),l=Math.pow(2,14)/.5;function c(){n.apply(this,arguments)}e.exports=c,c.prototype=i.inherit(n,{}),c.prototype.addLineVertex=function(t,e,r,n,i,a,o){return t.emplaceBack(e.x<<1|n,e.y<<1|i,Math.round(63*r.x)+128,Math.round(63*r.y)+128,1+(0===a?0:a<0?-1:1)|(.5*o&63)<<2,.5*o>>6)},c.prototype.programInterfaces={line:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_data",components:4,type:"Uint8"}]),elementArrayType:new n.ElementArrayType}},c.prototype.addFeature=function(t){for(var e=a(t,15),r=0;r<e.length;r++)this.addLine(e[r],this.layer.layout["line-join"],this.layer.layout["line-cap"],this.layer.layout["line-miter-limit"],this.layer.layout["line-round-limit"])},c.prototype.addLine=function(t,e,r,n,i){for(var a=t.length;a>2&&t[a-1].equals(t[a-2]);)a--;if(!(t.length<2)){"bevel"===e&&(n=1.05);var l=o/(512*this.overscaling)*15,c=t[0],u=t[a-1],f=c.equals(u);if(this.prepareArrayGroup("line",10*a),2!==a||!f){this.distance=0;var h,d,p,m,v,g,y,b=r,x=f?"butt":r,_=!0;this.e1=this.e2=this.e3=-1,f&&(h=t[a-2],v=c.sub(h)._unit()._perp());for(var w=0;w<a;w++)if(!(p=f&&w===a-1?t[1]:t[w+1])||!t[w].equals(p)){v&&(m=v),h&&(d=h),h=t[w],v=p?p.sub(h)._unit()._perp():m;var M=(m=m||v).add(v)._unit(),k=M.x*v.x+M.y*v.y,A=1/k,T=k<s&&d&&p;if(T&&w>0){var E=h.dist(d);if(E>2*l){var S=h.sub(h.sub(d)._mult(l/E)._round());this.distance+=S.dist(d),this.addCurrentVertex(S,this.distance,m.mult(1),0,0,!1),d=S}}var L=d&&p,C=L?e:p?b:x;if(L&&"round"===C&&(A<i?C="miter":A<=2&&(C="fakeround")),"miter"===C&&A>n&&(C="bevel"),"bevel"===C&&(A>2&&(C="flipbevel"),A<n&&(C="miter")),d&&(this.distance+=h.dist(d)),"miter"===C)M._mult(A),this.addCurrentVertex(h,this.distance,M,0,0,!1);else if("flipbevel"===C){if(A>100)M=v.clone();else{var P=m.x*v.y-m.y*v.x>0?-1:1,z=A*m.add(v).mag()/m.sub(v).mag();M._perp()._mult(z*P)}this.addCurrentVertex(h,this.distance,M,0,0,!1),this.addCurrentVertex(h,this.distance,M.mult(-1),0,0,!1)}else if("bevel"===C||"fakeround"===C){var O=m.x*v.y-m.y*v.x>0,D=-Math.sqrt(A*A-1);if(O?(y=0,g=D):(g=0,y=D),_||this.addCurrentVertex(h,this.distance,m,g,y,!1),"fakeround"===C){for(var I,R=Math.floor(8*(.5-(k-.5))),N=0;N<R;N++)I=v.mult((N+1)/(R+1))._add(m)._unit(),this.addPieSliceVertex(h,this.distance,I,O);this.addPieSliceVertex(h,this.distance,M,O);for(var F=R-1;F>=0;F--)I=m.mult((F+1)/(R+1))._add(v)._unit(),this.addPieSliceVertex(h,this.distance,I,O)}p&&this.addCurrentVertex(h,this.distance,v,-g,-y,!1)}else"butt"===C?(_||this.addCurrentVertex(h,this.distance,m,0,0,!1),p&&this.addCurrentVertex(h,this.distance,v,0,0,!1)):"square"===C?(_||(this.addCurrentVertex(h,this.distance,m,1,1,!1),this.e1=this.e2=-1),p&&this.addCurrentVertex(h,this.distance,v,-1,-1,!1)):"round"===C&&(_||(this.addCurrentVertex(h,this.distance,m,0,0,!1),this.addCurrentVertex(h,this.distance,m,1,1,!0),this.e1=this.e2=-1),p&&(this.addCurrentVertex(h,this.distance,v,-1,-1,!0),this.addCurrentVertex(h,this.distance,v,0,0,!1)));if(T&&w<a-1){var j=h.dist(p);if(j>2*l){var B=h.add(p.sub(h)._mult(l/j)._round());this.distance+=B.dist(h),this.addCurrentVertex(B,this.distance,v.mult(1),0,0,!1),h=B}}_=!1}}}},c.prototype.addCurrentVertex=function(t,e,r,n,i,a){var o,s=a?1:0,c=this.arrayGroups.line[this.arrayGroups.line.length-1],u=c.layoutVertexArray,f=c.elementArray;o=r.clone(),n&&o._sub(r.perp()._mult(n)),this.e3=this.addLineVertex(u,t,o,s,0,n,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,o=r.mult(-1),i&&o._sub(r.perp()._mult(i)),this.e3=this.addLineVertex(u,t,o,s,1,-i,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,e>l/2&&(this.distance=0,this.addCurrentVertex(t,this.distance,r,n,i,a))},c.prototype.addPieSliceVertex=function(t,e,r,n){var i=n?1:0;r=r.mult(n?-1:1);var a=this.arrayGroups.line[this.arrayGroups.line.length-1],o=a.layoutVertexArray,s=a.elementArray;this.e3=this.addLineVertex(o,t,r,0,i,0,e),this.e1>=0&&this.e2>=0&&s.emplaceBack(this.e1,this.e2,this.e3),n?this.e2=this.e3:this.e1=this.e3}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],305:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../bucket"),a=t("../../symbol/anchor"),o=t("../../symbol/get_anchors"),s=t("../../util/token"),l=t("../../symbol/quads"),c=t("../../symbol/shaping"),u=t("../../symbol/resolve_text"),f=t("../../symbol/mergelines"),h=t("../../symbol/clip_line"),d=t("../../util/util"),p=t("../load_geometry"),m=t("../../symbol/collision_feature"),v=c.shapeText,g=c.shapeIcon,y=l.getGlyphQuads,b=l.getIconQuads,x=i.EXTENT;function _(t){i.apply(this,arguments),this.showCollisionBoxes=t.showCollisionBoxes,this.overscaling=t.overscaling,this.collisionBoxArray=t.collisionBoxArray,this.symbolQuadsArray=t.symbolQuadsArray,this.symbolInstancesArray=t.symbolInstancesArray,this.sdfIcons=t.sdfIcons,this.iconsNeedLinear=t.iconsNeedLinear,this.adjustedTextSize=t.adjustedTextSize,this.adjustedIconSize=t.adjustedIconSize,this.fontstack=t.fontstack}e.exports=_,_.MAX_QUADS=65535,_.prototype=d.inherit(i,{}),_.prototype.serialize=function(){var t=i.prototype.serialize.apply(this);return t.sdfIcons=this.sdfIcons,t.iconsNeedLinear=this.iconsNeedLinear,t.adjustedTextSize=this.adjustedTextSize,t.adjustedIconSize=this.adjustedIconSize,t.fontstack=this.fontstack,t};var w=new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_offset",components:2,type:"Int16"},{name:"a_texture_pos",components:2,type:"Uint16"},{name:"a_data",components:4,type:"Uint8"}]),M=new i.ElementArrayType;function k(t,e,r,n,i,a,o,s,l,c,u){return t.emplaceBack(e,r,Math.round(64*n),Math.round(64*i),a/4,o/4,10*(c||0),u,10*(s||0),10*Math.min(l||25,25))}_.prototype.addCollisionBoxVertex=function(t,e,r,n,i){return t.emplaceBack(e.x,e.y,Math.round(r.x),Math.round(r.y),10*n,10*i)},_.prototype.programInterfaces={glyph:{layoutVertexArrayType:w,elementArrayType:M},icon:{layoutVertexArrayType:w,elementArrayType:M},collisionBox:{layoutVertexArrayType:new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_extrude",components:2,type:"Int16"},{name:"a_data",components:2,type:"Uint8"}])}},_.prototype.populateArrays=function(t,e,r){var n={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};this.adjustedTextMaxSize=this.layer.getLayoutValue("text-size",{zoom:18,zoomHistory:n}),this.adjustedTextSize=this.layer.getLayoutValue("text-size",{zoom:this.zoom+1,zoomHistory:n}),this.adjustedIconMaxSize=this.layer.getLayoutValue("icon-size",{zoom:18,zoomHistory:n}),this.adjustedIconSize=this.layer.getLayoutValue("icon-size",{zoom:this.zoom+1,zoomHistory:n});var i=512*this.overscaling;this.tilePixelRatio=x/i,this.compareText={},this.iconsNeedLinear=!1,this.symbolInstancesStartIndex=this.symbolInstancesArray.length;var a=this.layer.layout,o=this.features,l=this.textFeatures,c=.5,u=.5;switch(a["text-anchor"]){case"right":case"top-right":case"bottom-right":c=1;break;case"left":case"top-left":case"bottom-left":c=0}switch(a["text-anchor"]){case"bottom":case"bottom-right":case"bottom-left":u=1;break;case"top":case"top-right":case"top-left":u=0}for(var h,m,y="right"===a["text-justify"]?1:"left"===a["text-justify"]?0:.5,b=24*a["text-line-height"],_="line"!==a["symbol-placement"]?24*a["text-max-width"]:0,w=24*a["text-letter-spacing"],M=[24*a["text-offset"][0],24*a["text-offset"][1]],k=this.fontstack=a["text-font"].join(","),A=[],T=0;T<o.length;T++)A.push(p(o[T]));if("line"===a["symbol-placement"]){var E=f(o,l,A);A=E.geometries,o=E.features,l=E.textFeatures}for(var S=0;S<o.length;S++)if(A[S]){if(h=l[S]?v(l[S],e[k],_,b,c,u,y,w,M):null,a["icon-image"]){var L=r[s(o[S].properties,a["icon-image"])];m=g(L,a),L&&(void 0===this.sdfIcons?this.sdfIcons=L.sdf:this.sdfIcons!==L.sdf&&d.warnOnce("Style sheet warning: Cannot mix SDF and non-SDF icons in one buffer"),1!==L.pixelRatio?this.iconsNeedLinear=!0:0===a["icon-rotate"]&&this.layer.isLayoutValueFeatureConstant("icon-rotate")||(this.iconsNeedLinear=!0))}else m=null;(h||m)&&this.addFeature(A[S],h,m,o[S])}this.symbolInstancesEndIndex=this.symbolInstancesArray.length,this.placeFeatures(t,this.showCollisionBoxes),this.trimArrays()},_.prototype.addFeature=function(t,e,r,n){var i=this.layer.layout,s=this.adjustedTextSize/24,l=void 0!==this.adjustedTextMaxSize?this.adjustedTextMaxSize:this.adjustedTextSize,c=this.tilePixelRatio*s,u=this.tilePixelRatio*l/24,f=this.tilePixelRatio*this.adjustedIconSize,d=this.tilePixelRatio*i["symbol-spacing"],p=i["symbol-avoid-edges"],m=i["text-padding"]*this.tilePixelRatio,v=i["icon-padding"]*this.tilePixelRatio,g=i["text-max-angle"]/180*Math.PI,y="map"===i["text-rotation-alignment"]&&"line"===i["symbol-placement"],b="map"===i["icon-rotation-alignment"]&&"line"===i["symbol-placement"],_=i["text-allow-overlap"]||i["icon-allow-overlap"]||i["text-ignore-placement"]||i["icon-ignore-placement"],w="line"===i["symbol-placement"],M=d/2;w&&(t=h(t,0,0,x,x));for(var k=0;k<t.length;k++)for(var A,T=t[k],E=0,S=(A=w?o(T,d,g,e,r,24,u,this.overscaling,x):[new a(T[0].x,T[0].y,0)]).length;E<S;E++){var L=A[E];if(!(e&&w&&this.anchorIsTooClose(e.text,M,L))){var C=!(L.x<0||L.x>x||L.y<0||L.y>x);if(!p||C){var P=C||_;this.addSymbolInstance(L,T,e,r,this.layer,P,this.symbolInstancesArray.length,this.collisionBoxArray,n.index,this.sourceLayerIndex,this.index,c,m,y,f,v,b,{zoom:this.zoom},n.properties)}}}},_.prototype.anchorIsTooClose=function(t,e,r){var n=this.compareText;if(t in n){for(var i=n[t],a=i.length-1;a>=0;a--)if(r.dist(i[a])<e)return!0}else n[t]=[];return n[t].push(r),!1},_.prototype.placeFeatures=function(t,e){this.recalculateStyleLayers(),this.createArrays();var r=this.layer.layout,n=t.maxScale,i="map"===r["text-rotation-alignment"]&&"line"===r["symbol-placement"],a="map"===r["icon-rotation-alignment"]&&"line"===r["symbol-placement"];if(r["text-allow-overlap"]||r["icon-allow-overlap"]||r["text-ignore-placement"]||r["icon-ignore-placement"]){var o=this.symbolInstancesArray.toArray(this.symbolInstancesStartIndex,this.symbolInstancesEndIndex),s=t.angle,l=Math.sin(s),c=Math.cos(s);this.sortedSymbolInstances=o.sort(function(t,e){return(l*t.anchorPointX+c*t.anchorPointY|0)-(l*e.anchorPointX+c*e.anchorPointY|0)||e.index-t.index})}for(var u=this.symbolInstancesStartIndex;u<this.symbolInstancesEndIndex;u++){var f=this.sortedSymbolInstances?this.sortedSymbolInstances[u-this.symbolInstancesStartIndex]:this.symbolInstancesArray.get(u),h={boxStartIndex:f.textBoxStartIndex,boxEndIndex:f.textBoxEndIndex},d={boxStartIndex:f.iconBoxStartIndex,boxEndIndex:f.iconBoxEndIndex},p=!(f.textBoxStartIndex===f.textBoxEndIndex),m=!(f.iconBoxStartIndex===f.iconBoxEndIndex),v=r["text-optional"]||!p,g=r["icon-optional"]||!m,y=p?t.placeCollisionFeature(h,r["text-allow-overlap"],r["symbol-avoid-edges"]):t.minScale,b=m?t.placeCollisionFeature(d,r["icon-allow-overlap"],r["symbol-avoid-edges"]):t.minScale;v||g?!g&&y?y=Math.max(b,y):!v&&b&&(b=Math.max(b,y)):b=y=Math.max(b,y),p&&(t.insertCollisionFeature(h,y,r["text-ignore-placement"]),y<=n&&this.addSymbols("glyph",f.glyphQuadStartIndex,f.glyphQuadEndIndex,y,r["text-keep-upright"],i,t.angle)),m&&(t.insertCollisionFeature(d,b,r["icon-ignore-placement"]),b<=n&&this.addSymbols("icon",f.iconQuadStartIndex,f.iconQuadEndIndex,b,r["icon-keep-upright"],a,t.angle))}e&&this.addToDebugBuffers(t)},_.prototype.addSymbols=function(t,e,r,n,i,a,o){for(var s=this.prepareArrayGroup(t,4*(r-e)),l=s.elementArray,c=s.layoutVertexArray,u=this.zoom,f=Math.max(Math.log(n)/Math.LN2+u,0),h=e;h<r;h++){var d=this.symbolQuadsArray.get(h).SymbolQuad,p=(d.anchorAngle+o+Math.PI)%(2*Math.PI);if(!(i&&a&&(p<=Math.PI/2||p>3*Math.PI/2))){var m=d.tl,v=d.tr,g=d.bl,y=d.br,b=d.tex,x=d.anchorPoint,_=Math.max(u+Math.log(d.minScale)/Math.LN2,f),w=Math.min(u+Math.log(d.maxScale)/Math.LN2,25);if(!(w<=_)){_===f&&(_=0);var M=Math.round(d.glyphAngle/(2*Math.PI)*256),A=k(c,x.x,x.y,m.x,m.y,b.x,b.y,_,w,f,M);k(c,x.x,x.y,v.x,v.y,b.x+b.w,b.y,_,w,f,M),k(c,x.x,x.y,g.x,g.y,b.x,b.y+b.h,_,w,f,M),k(c,x.x,x.y,y.x,y.y,b.x+b.w,b.y+b.h,_,w,f,M),l.emplaceBack(A,A+1,A+2),l.emplaceBack(A+1,A+2,A+3)}}}},_.prototype.updateIcons=function(t){this.recalculateStyleLayers();var e=this.layer.layout["icon-image"];if(e)for(var r=0;r<this.features.length;r++){var n=s(this.features[r].properties,e);n&&(t[n]=!0)}},_.prototype.updateFont=function(t){this.recalculateStyleLayers();var e=this.layer.layout["text-font"],r=t[e]=t[e]||{};this.textFeatures=u(this.features,this.layer.layout,r)},_.prototype.addToDebugBuffers=function(t){for(var e=this.prepareArrayGroup("collisionBox",0).layoutVertexArray,r=-t.angle,i=t.yStretch,a=this.symbolInstancesStartIndex;a<this.symbolInstancesEndIndex;a++){var o=this.symbolInstancesArray.get(a);o.textCollisionFeature={boxStartIndex:o.textBoxStartIndex,boxEndIndex:o.textBoxEndIndex},o.iconCollisionFeature={boxStartIndex:o.iconBoxStartIndex,boxEndIndex:o.iconBoxEndIndex};for(var s=0;s<2;s++){var l=o[0===s?"textCollisionFeature":"iconCollisionFeature"];if(l)for(var c=l.boxStartIndex;c<l.boxEndIndex;c++){var u=this.collisionBoxArray.get(c),f=u.anchorPoint,h=new n(u.x1,u.y1*i)._rotate(r),d=new n(u.x2,u.y1*i)._rotate(r),p=new n(u.x1,u.y2*i)._rotate(r),m=new n(u.x2,u.y2*i)._rotate(r),v=Math.max(0,Math.min(25,this.zoom+Math.log(u.maxScale)/Math.LN2)),g=Math.max(0,Math.min(25,this.zoom+Math.log(u.placementScale)/Math.LN2));this.addCollisionBoxVertex(e,f,h,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,h,v,g)}}}},_.prototype.addSymbolInstance=function(t,e,r,n,i,a,o,s,l,c,u,f,h,p,v,g,x,w,M){var k,A,T,E,S,L,C,P;if(r&&(C=a?y(t,r,f,e,i,p):[],S=new m(s,e,t,l,c,u,r,f,h,p,!1)),k=this.symbolQuadsArray.length,C&&C.length)for(var z=0;z<C.length;z++)this.addSymbolQuad(C[z]);A=this.symbolQuadsArray.length;var O=S?S.boxStartIndex:this.collisionBoxArray.length,D=S?S.boxEndIndex:this.collisionBoxArray.length;n&&(P=a?b(t,n,v,e,i,x,r,w,M):[],L=new m(s,e,t,l,c,u,n,v,g,x,!0)),T=this.symbolQuadsArray.length,P&&1===P.length&&this.addSymbolQuad(P[0]),E=this.symbolQuadsArray.length;var I=L?L.boxStartIndex:this.collisionBoxArray.length,R=L?L.boxEndIndex:this.collisionBoxArray.length;return E>_.MAX_QUADS&&d.warnOnce("Too many symbols being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),A>_.MAX_QUADS&&d.warnOnce("Too many glyphs being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),this.symbolInstancesArray.emplaceBack(O,D,I,R,k,A,T,E,t.x,t.y,o)},_.prototype.addSymbolQuad=function(t){return this.symbolQuadsArray.emplaceBack(t.anchorPoint.x,t.anchorPoint.y,t.tl.x,t.tl.y,t.tr.x,t.tr.y,t.bl.x,t.bl.y,t.br.x,t.br.y,t.tex.h,t.tex.w,t.tex.x,t.tex.y,t.anchorAngle,t.glyphAngle,t.maxScale,t.minScale)}},{"../../symbol/anchor":363,"../../symbol/clip_line":365,"../../symbol/collision_feature":367,"../../symbol/get_anchors":369,"../../symbol/mergelines":372,"../../symbol/quads":373,"../../symbol/resolve_text":374,"../../symbol/shaping":375,"../../util/token":413,"../../util/util":414,"../bucket":301,"../load_geometry":309,"point-geometry":458}],306:[function(t,e,r){"use strict";function n(t,e,r){this.arrayBuffer=t.arrayBuffer,this.length=t.length,this.attributes=e.members,this.itemSize=e.bytesPerElement,this.type=r,this.arrayType=e}e.exports=n,n.prototype.bind=function(t){var e=t[this.type];this.buffer?t.bindBuffer(e,this.buffer):(this.buffer=t.createBuffer(),t.bindBuffer(e,this.buffer),t.bufferData(e,this.arrayBuffer,t.STATIC_DRAW),this.arrayBuffer=null)};var i={Int8:"BYTE",Uint8:"UNSIGNED_BYTE",Int16:"SHORT",Uint16:"UNSIGNED_SHORT"};n.prototype.setVertexAttribPointers=function(t,e){for(var r=0;r<this.attributes.length;r++){var n=this.attributes[r],a=e[n.name];void 0!==a&&t.vertexAttribPointer(a,n.components,t[i[n.type]],!1,this.arrayType.bytesPerElement,n.offset)}},n.prototype.destroy=function(t){this.buffer&&t.deleteBuffer(this.buffer)},n.BufferType={VERTEX:"ARRAY_BUFFER",ELEMENT:"ELEMENT_ARRAY_BUFFER"}},{}],307:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./buffer"),a=t("../render/vertex_array_object");function o(t,e){this.layoutVertexBuffer=new i(t.layoutVertexArray,e.layoutVertexArrayType,i.BufferType.VERTEX),t.elementArray&&(this.elementBuffer=new i(t.elementArray,e.elementArrayType,i.BufferType.ELEMENT));var r,o=this.vaos={};t.elementArray2&&(this.elementBuffer2=new i(t.elementArray2,e.elementArrayType2,i.BufferType.ELEMENT),r=this.secondVaos={}),this.paintVertexBuffers=n.mapObject(t.paintVertexArrays,function(n,s){return o[s]=new a,t.elementArray2&&(r[s]=new a),new i(n,e.paintVertexArrayTypes[s],i.BufferType.VERTEX)})}e.exports=o,o.prototype.destroy=function(t){for(var e in this.layoutVertexBuffer.destroy(t),this.elementBuffer&&this.elementBuffer.destroy(t),this.elementBuffer2&&this.elementBuffer2.destroy(t),this.paintVertexBuffers)this.paintVertexBuffers[e].destroy(t);for(var r in this.vaos)this.vaos[r].destroy(t);for(var n in this.secondVaos)this.secondVaos[n].destroy(t)}},{"../render/vertex_array_object":329,"../util/util":414,"./buffer":306}],308:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("./load_geometry"),a=t("./bucket").EXTENT,o=t("feature-filter"),s=t("../util/struct_array"),l=t("grid-index"),c=t("../util/dictionary_coder"),u=t("vector-tile"),f=t("pbf"),h=t("../util/vectortile_to_geojson"),d=t("../util/util").arraysIntersect,p=t("../util/intersection_tests"),m=p.multiPolygonIntersectsBufferedMultiPoint,v=p.multiPolygonIntersectsMultiPolygon,g=p.multiPolygonIntersectsBufferedMultiLine,y=new s({members:[{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"}]});function b(t,e,r){if(t.grid){var n=t,i=e;t=n.coord,e=n.overscaling,this.grid=new l(n.grid),this.featureIndexArray=new y(n.featureIndexArray),this.rawTileData=i,this.bucketLayerIDs=n.bucketLayerIDs}else this.grid=new l(a,16,0),this.featureIndexArray=new y;this.coord=t,this.overscaling=e,this.x=t.x,this.y=t.y,this.z=t.z-Math.log(e)/Math.LN2,this.setCollisionTile(r)}function x(t){return Math.sqrt(t[0]*t[0]+t[1]*t[1])}function _(t,e){return e-t}function w(t){return t["line-gap-width"]>0?t["line-gap-width"]+2*t["line-width"]:t["line-width"]}function M(t,e,r,i,a){if(!e[0]&&!e[1])return t;e=n.convert(e),"viewport"===r&&e._rotate(-i);for(var o=[],s=0;s<t.length;s++){for(var l=t[s],c=[],u=0;u<l.length;u++)c.push(l[u].sub(e._mult(a)));o.push(c)}return o}function k(t,e){for(var r=[],i=new n(0,0),a=0;a<t.length;a++){for(var o=t[a],s=[],l=0;l<o.length;l++){var c=o[l-1],u=o[l],f=o[l+1],h=0===l?i:u.sub(c)._unit()._perp(),d=l===o.length-1?i:f.sub(u)._unit()._perp(),p=h._add(d)._unit(),m=p.x*d.x+p.y*d.y;p._mult(1/m),s.push(p._mult(e)._add(u))}r.push(s)}return r}e.exports=b,b.prototype.insert=function(t,e,r,n){var a=this.featureIndexArray.length;this.featureIndexArray.emplaceBack(e,r,n);for(var o=i(t),s=0;s<o.length;s++){for(var l=o[s],c=[1/0,1/0,-1/0,-1/0],u=0;u<l.length;u++){var f=l[u];c[0]=Math.min(c[0],f.x),c[1]=Math.min(c[1],f.y),c[2]=Math.max(c[2],f.x),c[3]=Math.max(c[3],f.y)}this.grid.insert(a,c[0],c[1],c[2],c[3])}},b.prototype.setCollisionTile=function(t){this.collisionTile=t},b.prototype.serialize=function(){var t={coord:this.coord,overscaling:this.overscaling,grid:this.grid.toArrayBuffer(),featureIndexArray:this.featureIndexArray.serialize(),bucketLayerIDs:this.bucketLayerIDs};return{data:t,transferables:[t.grid,t.featureIndexArray.arrayBuffer]}},b.prototype.query=function(t,e){this.vtLayers||(this.vtLayers=new u.VectorTile(new f(new Uint8Array(this.rawTileData))).layers,this.sourceLayerCoder=new c(this.vtLayers?Object.keys(this.vtLayers).sort():["_geojsonTileLayer"]));var r={},i=t.params||{},s=a/t.tileSize/t.scale,l=o(i.filter),h=0;for(var d in e){var p=e[d],m=p.paint,v=0;"line"===p.type?v=w(m)/2+Math.abs(m["line-offset"])+x(m["line-translate"]):"fill"===p.type?v=x(m["fill-translate"]):"circle"===p.type&&(v=m["circle-radius"]+x(m["circle-translate"])),h=Math.max(h,v*s)}for(var g=t.queryGeometry.map(function(t){return t.map(function(t){return new n(t.x,t.y)})}),y=1/0,b=1/0,M=-1/0,k=-1/0,A=0;A<g.length;A++)for(var T=g[A],E=0;E<T.length;E++){var S=T[E];y=Math.min(y,S.x),b=Math.min(b,S.y),M=Math.max(M,S.x),k=Math.max(k,S.y)}var L=this.grid.query(y-h,b-h,M+h,k+h);L.sort(_),this.filterMatching(r,L,this.featureIndexArray,g,l,i.layers,e,t.bearing,s);var C=this.collisionTile.queryRenderedSymbols(y,b,M,k,t.scale);return C.sort(),this.filterMatching(r,C,this.collisionTile.collisionBoxArray,g,l,i.layers,e,t.bearing,s),r},b.prototype.filterMatching=function(t,e,r,n,a,o,s,l,c){for(var u,f=0;f<e.length;f++){var p=e[f];if(p!==u){u=p;var y=r.get(p),b=this.bucketLayerIDs[y.bucketIndex];if(!o||d(o,b)){var x=this.sourceLayerCoder.decode(y.sourceLayerIndex),_=this.vtLayers[x].feature(y.featureIndex);if(a(_))for(var A=null,T=0;T<b.length;T++){var E=b[T];if(!(o&&o.indexOf(E)<0)){var S=s[E];if(S){var L;if("symbol"!==S.type){A||(A=i(_));var C=S.paint;if("line"===S.type){L=M(n,C["line-translate"],C["line-translate-anchor"],l,c);var P=w(C)/2*c;if(C["line-offset"]&&(A=k(A,C["line-offset"]*c)),!g(L,A,P))continue}else if("fill"===S.type){if(L=M(n,C["fill-translate"],C["fill-translate-anchor"],l,c),!v(L,A))continue}else if("circle"===S.type){L=M(n,C["circle-translate"],C["circle-translate-anchor"],l,c);var z=C["circle-radius"]*c;if(!m(L,A,z))continue}}var O=new h(_,this.z,this.x,this.y);O.layer=S.serialize({includeRefProperties:!0});var D=t[E];void 0===D&&(D=t[E]=[]),D.push(O)}}}}}}}},{"../util/dictionary_coder":404,"../util/intersection_tests":409,"../util/struct_array":412,"../util/util":414,"../util/vectortile_to_geojson":415,"./bucket":301,"./load_geometry":309,"feature-filter":141,"grid-index":254,pbf:451,"point-geometry":458,"vector-tile":544}],309:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./bucket").EXTENT,a=t("assert");function o(t){return{min:-1*Math.pow(2,t-1),max:Math.pow(2,t-1)-1}}var s={15:o(15),16:o(16)};e.exports=function(t,e){var r=s[e||16];a(r);for(var o=i/t.extent,l=t.loadGeometry(),c=0;c<l.length;c++)for(var u=l[c],f=0;f<u.length;f++){var h=u[f];h.x=Math.round(h.x*o),h.y=Math.round(h.y*o),(h.x<r.min||h.x>r.max||h.y<r.min||h.y>r.max)&&n.warnOnce("Geometry exceeds allowed extent, reduce your vector tile buffer size")}return l}},{"../util/util":414,"./bucket":301,assert:51}],310:[function(t,e,r){"use strict";function n(t,e,r){this.column=t,this.row=e,this.zoom=r}e.exports=n,n.prototype={clone:function(){return new n(this.column,this.row,this.zoom)},zoomTo:function(t){return this.clone()._zoomTo(t)},sub:function(t){return this.clone()._sub(t)},_zoomTo:function(t){var e=Math.pow(2,t-this.zoom);return this.column*=e,this.row*=e,this.zoom=t,this},_sub:function(t){return t=t.zoomTo(this.zoom),this.column-=t.column,this.row-=t.row,this}}},{}],311:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util").wrap;function i(t,e){if(isNaN(t)||isNaN(e))throw new Error("Invalid LngLat object: ("+t+", "+e+")");if(this.lng=+t,this.lat=+e,this.lat>90||this.lat<-90)throw new Error("Invalid LngLat latitude value: must be between -90 and 90")}i.prototype.wrap=function(){return new i(n(this.lng,-180,180),this.lat)},i.prototype.toArray=function(){return[this.lng,this.lat]},i.prototype.toString=function(){return"LngLat("+this.lng+", "+this.lat+")"},i.convert=function(t){return t instanceof i?t:Array.isArray(t)?new i(t[0],t[1]):t}},{"../util/util":414}],312:[function(t,e,r){"use strict";e.exports=i;var n=t("./lng_lat");function i(t,e){t&&(e?this.extend(t).extend(e):4===t.length?this.extend([t[0],t[1]]).extend([t[2],t[3]]):this.extend(t[0]).extend(t[1]))}i.prototype={extend:function(t){var e,r,a=this._sw,o=this._ne;if(t instanceof n)e=t,r=t;else{if(!(t instanceof i))return t?this.extend(n.convert(t)||i.convert(t)):this;if(e=t._sw,r=t._ne,!e||!r)return this}return a||o?(a.lng=Math.min(e.lng,a.lng),a.lat=Math.min(e.lat,a.lat),o.lng=Math.max(r.lng,o.lng),o.lat=Math.max(r.lat,o.lat)):(this._sw=new n(e.lng,e.lat),this._ne=new n(r.lng,r.lat)),this},getCenter:function(){return new n((this._sw.lng+this._ne.lng)/2,(this._sw.lat+this._ne.lat)/2)},getSouthWest:function(){return this._sw},getNorthEast:function(){return this._ne},getNorthWest:function(){return new n(this.getWest(),this.getNorth())},getSouthEast:function(){return new n(this.getEast(),this.getSouth())},getWest:function(){return this._sw.lng},getSouth:function(){return this._sw.lat},getEast:function(){return this._ne.lng},getNorth:function(){return this._ne.lat},toArray:function(){return[this._sw.toArray(),this._ne.toArray()]},toString:function(){return"LngLatBounds("+this._sw.toString()+", "+this._ne.toString()+")"}},i.convert=function(t){return!t||t instanceof i?t:new i(t)}},{"./lng_lat":311}],313:[function(t,e,r){"use strict";var n=t("./lng_lat"),i=t("point-geometry"),a=t("./coordinate"),o=t("../util/util").wrap,s=t("../util/interpolate"),l=t("../source/tile_coord"),c=t("../data/bucket").EXTENT,u=t("gl-matrix"),f=u.vec4,h=u.mat4,d=u.mat2;function p(t,e){this.tileSize=512,this._minZoom=t||0,this._maxZoom=e||22,this.latRange=[-85.05113,85.05113],this.width=0,this.height=0,this._center=new n(0,0),this.zoom=0,this.angle=0,this._altitude=1.5,this._pitch=0,this._unmodified=!0}e.exports=p,p.prototype={get minZoom(){return this._minZoom},set minZoom(t){this._minZoom!==t&&(this._minZoom=t,this.zoom=Math.max(this.zoom,t))},get maxZoom(){return this._maxZoom},set maxZoom(t){this._maxZoom!==t&&(this._maxZoom=t,this.zoom=Math.min(this.zoom,t))},get worldSize(){return this.tileSize*this.scale},get centerPoint(){return this.size._div(2)},get size(){return new i(this.width,this.height)},get bearing(){return-this.angle/Math.PI*180},set bearing(t){var e=-o(t,-180,180)*Math.PI/180;this.angle!==e&&(this._unmodified=!1,this.angle=e,this._calcMatrices(),this.rotationMatrix=d.create(),d.rotate(this.rotationMatrix,this.rotationMatrix,this.angle))},get pitch(){return this._pitch/Math.PI*180},set pitch(t){var e=Math.min(60,t)/180*Math.PI;this._pitch!==e&&(this._unmodified=!1,this._pitch=e,this._calcMatrices())},get altitude(){return this._altitude},set altitude(t){var e=Math.max(.75,t);this._altitude!==e&&(this._unmodified=!1,this._altitude=e,this._calcMatrices())},get zoom(){return this._zoom},set zoom(t){var e=Math.min(Math.max(t,this.minZoom),this.maxZoom);this._zoom!==e&&(this._unmodified=!1,this._zoom=e,this.scale=this.zoomScale(e),this.tileZoom=Math.floor(e),this.zoomFraction=e-this.tileZoom,this._calcMatrices(),this._constrain())},get center(){return this._center},set center(t){t.lat===this._center.lat&&t.lng===this._center.lng||(this._unmodified=!1,this._center=t,this._calcMatrices(),this._constrain())},coveringZoomLevel:function(t){return(t.roundZoom?Math.round:Math.floor)(this.zoom+this.scaleZoom(this.tileSize/t.tileSize))},coveringTiles:function(t){var e=this.coveringZoomLevel(t),r=e;if(e<t.minzoom)return[];e>t.maxzoom&&(e=t.maxzoom);var n=this,a=n.locationCoordinate(n.center)._zoomTo(e),o=new i(a.column-.5,a.row-.5);return l.cover(e,[n.pointCoordinate(new i(0,0))._zoomTo(e),n.pointCoordinate(new i(n.width,0))._zoomTo(e),n.pointCoordinate(new i(n.width,n.height))._zoomTo(e),n.pointCoordinate(new i(0,n.height))._zoomTo(e)],t.reparseOverscaled?r:e).sort(function(t,e){return o.dist(t)-o.dist(e)})},resize:function(t,e){this.width=t,this.height=e,this.pixelsToGLUnits=[2/t,-2/e],this._calcMatrices(),this._constrain()},get unmodified(){return this._unmodified},zoomScale:function(t){return Math.pow(2,t)},scaleZoom:function(t){return Math.log(t)/Math.LN2},project:function(t,e){return new i(this.lngX(t.lng,e),this.latY(t.lat,e))},unproject:function(t,e){return new n(this.xLng(t.x,e),this.yLat(t.y,e))},get x(){return this.lngX(this.center.lng)},get y(){return this.latY(this.center.lat)},get point(){return new i(this.x,this.y)},lngX:function(t,e){return(180+t)*(e||this.worldSize)/360},latY:function(t,e){return(180-180/Math.PI*Math.log(Math.tan(Math.PI/4+t*Math.PI/360)))*(e||this.worldSize)/360},xLng:function(t,e){return 360*t/(e||this.worldSize)-180},yLat:function(t,e){var r=180-360*t/(e||this.worldSize);return 360/Math.PI*Math.atan(Math.exp(r*Math.PI/180))-90},panBy:function(t){var e=this.centerPoint._add(t);this.center=this.pointLocation(e)},setLocationAtPoint:function(t,e){var r=this.locationCoordinate(t),n=this.pointCoordinate(e),i=this.pointCoordinate(this.centerPoint),a=n._sub(r);this._unmodified=!1,this.center=this.coordinateLocation(i._sub(a))},locationPoint:function(t){return this.coordinatePoint(this.locationCoordinate(t))},pointLocation:function(t){return this.coordinateLocation(this.pointCoordinate(t))},locationCoordinate:function(t){var e=this.zoomScale(this.tileZoom)/this.worldSize,r=n.convert(t);return new a(this.lngX(r.lng)*e,this.latY(r.lat)*e,this.tileZoom)},coordinateLocation:function(t){var e=this.zoomScale(t.zoom);return new n(this.xLng(t.column,e),this.yLat(t.row,e))},pointCoordinate:function(t){var e=[t.x,t.y,0,1],r=[t.x,t.y,1,1];f.transformMat4(e,e,this.pixelMatrixInverse),f.transformMat4(r,r,this.pixelMatrixInverse);var n=e[3],i=r[3],o=e[0]/n,l=r[0]/i,c=e[1]/n,u=r[1]/i,h=e[2]/n,d=r[2]/i,p=h===d?0:(0-h)/(d-h),m=this.worldSize/this.zoomScale(this.tileZoom);return new a(s(o,l,p)/m,s(c,u,p)/m,this.tileZoom)},coordinatePoint:function(t){var e=this.worldSize/this.zoomScale(t.zoom),r=[t.column*e,t.row*e,0,1];return f.transformMat4(r,r,this.pixelMatrix),new i(r[0]/r[3],r[1]/r[3])},calculatePosMatrix:function(t,e){void 0===e&&(e=1/0),t instanceof l&&(t=t.toCoordinate(e));var r=Math.min(t.zoom,e),n=this.worldSize/Math.pow(2,r),i=new Float64Array(16);return h.identity(i),h.translate(i,i,[t.column*n,t.row*n,0]),h.scale(i,i,[n/c,n/c,1]),h.multiply(i,this.projMatrix,i),new Float32Array(i)},_constrain:function(){if(this.center&&this.width&&this.height&&!this._constraining){this._constraining=!0;var t,e,r,n,a,o,s,l,c=this.size,u=this._unmodified;this.latRange&&(t=this.latY(this.latRange[1]),a=(e=this.latY(this.latRange[0]))-t<c.y?c.y/(e-t):0),this.lngRange&&(r=this.lngX(this.lngRange[0]),o=(n=this.lngX(this.lngRange[1]))-r<c.x?c.x/(n-r):0);var f=Math.max(o||0,a||0);if(f)return this.center=this.unproject(new i(o?(n+r)/2:this.x,a?(e+t)/2:this.y)),this.zoom+=this.scaleZoom(f),this._unmodified=u,void(this._constraining=!1);if(this.latRange){var h=this.y,d=c.y/2;h-d<t&&(l=t+d),h+d>e&&(l=e-d)}if(this.lngRange){var p=this.x,m=c.x/2;p-m<r&&(s=r+m),p+m>n&&(s=n-m)}void 0===s&&void 0===l||(this.center=this.unproject(new i(void 0!==s?s:this.x,void 0!==l?l:this.y))),this._unmodified=u,this._constraining=!1}},_calcMatrices:function(){if(this.height){var t=Math.atan(.5/this.altitude),e=Math.sin(t)*this.altitude/Math.sin(Math.PI/2-this._pitch-t),r=Math.cos(Math.PI/2-this._pitch)*e+this.altitude,n=new Float64Array(16);if(h.perspective(n,2*Math.atan(this.height/2/this.altitude),this.width/this.height,.1,r),h.translate(n,n,[0,0,-this.altitude]),h.scale(n,n,[1,-1,1/this.height]),h.rotateX(n,n,this._pitch),h.rotateZ(n,n,this.angle),h.translate(n,n,[-this.x,-this.y,0]),this.projMatrix=n,n=h.create(),h.scale(n,n,[this.width/2,-this.height/2,1]),h.translate(n,n,[1,-1,0]),this.pixelMatrix=h.multiply(new Float64Array(16),n,this.projMatrix),!(n=h.invert(new Float64Array(16),this.pixelMatrix)))throw new Error("failed to invert matrix");this.pixelMatrixInverse=n}}}},{"../data/bucket":301,"../source/tile_coord":341,"../util/interpolate":408,"../util/util":414,"./coordinate":310,"./lng_lat":311,"gl-matrix":198,"point-geometry":458}],314:[function(t,e,r){"use strict";var n={" 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a,o,s,l,c,u,f,h,d=[];for(a=0,o=t.length;a<o;a++)if(c=n[t[a]]){for(h=null,s=0,l=c[1].length;s<l;s+=2)-1===c[1][s]&&-1===c[1][s+1]?h=null:(u=e+c[1][s]*i,f=r-c[1][s+1]*i,h&&d.push(h.x,h.y,u,f),h={x:u,y:f});e+=c[0]*i}return d}},{}],315:[function(t,e,r){"use strict";var n=e.exports={};n.version=t("../package.json").version,n.Map=t("./ui/map"),n.Control=t("./ui/control/control"),n.Navigation=t("./ui/control/navigation"),n.Geolocate=t("./ui/control/geolocate"),n.Attribution=t("./ui/control/attribution"),n.Popup=t("./ui/popup"),n.Marker=t("./ui/marker"),n.Style=t("./style/style"),n.LngLat=t("./geo/lng_lat"),n.LngLatBounds=t("./geo/lng_lat_bounds"),n.Point=t("point-geometry"),n.Evented=t("./util/evented"),n.util=t("./util/util"),n.supported=t("./util/browser").supported;var i=t("./util/ajax");n.util.getJSON=i.getJSON,n.util.getArrayBuffer=i.getArrayBuffer;var a=t("./util/config");n.config=a,Object.defineProperty(n,"accessToken",{get:function(){return a.ACCESS_TOKEN},set:function(t){a.ACCESS_TOKEN=t}})},{"../package.json":416,"./geo/lng_lat":311,"./geo/lng_lat_bounds":312,"./style/style":350,"./ui/control/attribution":381,"./ui/control/control":382,"./ui/control/geolocate":383,"./ui/control/navigation":384,"./ui/map":393,"./ui/marker":394,"./ui/popup":395,"./util/ajax":397,"./util/browser":398,"./util/config":403,"./util/evented":406,"./util/util":414,"point-geometry":458}],316:[function(t,e,r){"use strict";var n=t("assert");e.exports=function(t){for(var e={define:{},initialize:{}},r=0;r<t.length;r++){var i=t[r];n("u_"===i.name.slice(0,2));var a="{precision} "+(1===i.components?"float":"vec"+i.components);e.define[i.name.slice(2)]="uniform "+a+" "+i.name+";\n",e.initialize[i.name.slice(2)]=a+" "+i.name.slice(2)+" = "+i.name+";\n"}return e}},{assert:51}],317:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units"),i=t("./create_uniform_pragmas"),a=512;e.exports=function(t,e,r){var o,s=t.gl,l=t.transform,c=r.paint["background-color"],u=r.paint["background-pattern"],f=r.paint["background-opacity"],h=u?t.spriteAtlas.getPosition(u.from,!0):null,d=u?t.spriteAtlas.getPosition(u.to,!0):null;if(t.setDepthSublayer(0),h&&d){if(t.isOpaquePass)return;o=t.useProgram("pattern"),s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,h.tl),s.uniform2fv(o.u_pattern_br_a,h.br),s.uniform2fv(o.u_pattern_tl_b,d.tl),s.uniform2fv(o.u_pattern_br_b,d.br),s.uniform1f(o.u_opacity,f),s.uniform1f(o.u_mix,u.t),s.uniform2fv(o.u_pattern_size_a,h.size),s.uniform2fv(o.u_pattern_size_b,d.size),s.uniform1f(o.u_scale_a,u.fromScale),s.uniform1f(o.u_scale_b,u.toScale),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),t.tileExtentPatternVAO.bind(s,o,t.tileExtentBuffer)}else{if(t.isOpaquePass!==(1===c[3]))return;var p=i([{name:"u_color",components:4},{name:"u_opacity",components:1}]);o=t.useProgram("fill",[],p,p),s.uniform4fv(o.u_color,c),s.uniform1f(o.u_opacity,f),t.tileExtentVAO.bind(s,o,t.tileExtentBuffer)}s.disable(s.STENCIL_TEST);for(var m=l.coveringTiles({tileSize:a}),v=0;v<m.length;v++){var g=m[v];if(h&&d){var y={coord:g,tileSize:a};s.uniform1f(o.u_tile_units_to_pixels,1/n(y,1,t.transform.tileZoom));var b=y.tileSize*Math.pow(2,t.transform.tileZoom-y.coord.z),x=b*(y.coord.x+g.w*Math.pow(2,y.coord.z)),_=b*y.coord.y;s.uniform2f(o.u_pixel_coord_upper,x>>16,_>>16),s.uniform2f(o.u_pixel_coord_lower,65535&x,65535&_)}s.uniformMatrix4fv(o.u_matrix,!1,t.transform.calculatePosMatrix(g)),s.drawArrays(s.TRIANGLE_STRIP,0,t.tileExtentBuffer.length)}s.stencilMask(0),s.stencilFunc(s.EQUAL,128,128)}},{"../source/pixels_to_tile_units":335,"./create_uniform_pragmas":316}],318:[function(t,e,r){"use strict";var n=t("../util/browser");e.exports=function(t,e,r,i){if(t.isOpaquePass)return;var a=t.gl;t.setDepthSublayer(0),t.depthMask(!1),a.disable(a.STENCIL_TEST);for(var o=0;o<i.length;o++){var s=i[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.circle;if(u){var f=c.paintAttributes.circle[r.id],h=t.useProgram("circle",f.defines,f.vertexPragmas,f.fragmentPragmas);"map"===r.paint["circle-pitch-scale"]?(a.uniform1i(h.u_scale_with_map,!0),a.uniform2f(h.u_extrude_scale,t.transform.pixelsToGLUnits[0]*t.transform.altitude,t.transform.pixelsToGLUnits[1]*t.transform.altitude)):(a.uniform1i(h.u_scale_with_map,!1),a.uniform2fv(h.u_extrude_scale,t.transform.pixelsToGLUnits)),a.uniform1f(h.u_devicepixelratio,n.devicePixelRatio),a.uniformMatrix4fv(h.u_matrix,!1,t.translatePosMatrix(s.posMatrix,l,r.paint["circle-translate"],r.paint["circle-translate-anchor"])),c.setUniforms(a,"circle",h,r,{zoom:t.transform.zoom});for(var d=0;d<u.length;d++){var p=u[d];p.vaos[r.id].bind(a,h,p.layoutVertexBuffer,p.elementBuffer,p.paintVertexBuffers[r.id]),a.drawElements(a.TRIANGLES,3*p.elementBuffer.length,a.UNSIGNED_SHORT,0)}}}}}},{"../util/browser":398}],319:[function(t,e,r){"use strict";e.exports=function(t,e,r,n){var i=t.gl;i.enable(i.STENCIL_TEST);for(var a=t.useProgram("collisionbox"),o=0;o<n.length;o++){var s=n[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.collisionBox;if(u&&u.length){var f=u[0];0!==f.layoutVertexBuffer.length&&(i.uniformMatrix4fv(a.u_matrix,!1,s.posMatrix),t.enableTileClippingMask(s),t.lineWidth(1),i.uniform1f(a.u_scale,Math.pow(2,t.transform.zoom-l.coord.z)),i.uniform1f(a.u_zoom,10*t.transform.zoom),i.uniform1f(a.u_maxzoom,10*(l.coord.z+1)),f.vaos[r.id].bind(i,a,f.layoutVertexBuffer),i.drawArrays(i.LINES,0,f.layoutVertexBuffer.length))}}}}},{}],320:[function(t,e,r){"use strict";var n=t("../lib/debugtext"),i=t("../util/browser"),a=t("gl-matrix").mat4,o=t("../data/bucket").EXTENT,s=t("../data/buffer"),l=t("./vertex_array_object");function c(t,e,r){var c=t.gl;c.disable(c.STENCIL_TEST),t.lineWidth(1*i.devicePixelRatio);var u=r.posMatrix,f=t.useProgram("debug");c.uniformMatrix4fv(f.u_matrix,!1,u),c.uniform4f(f.u_color,1,0,0,1),t.debugVAO.bind(c,f,t.debugBuffer),c.drawArrays(c.LINE_STRIP,0,t.debugBuffer.length);for(var h=n(r.toString(),50,200,5),d=new t.PosArray,p=0;p<h.length;p+=2)d.emplaceBack(h[p],h[p+1]);var m=new s(d.serialize(),t.PosArray.serialize(),s.BufferType.VERTEX);(new l).bind(c,f,m),c.uniform4f(f.u_color,1,1,1,1);for(var v=e.getTile(r).tileSize,g=o/(Math.pow(2,t.transform.zoom-r.z)*v),y=[[-1,-1],[-1,1],[1,-1],[1,1]],b=0;b<y.length;b++){var x=y[b];c.uniformMatrix4fv(f.u_matrix,!1,a.translate([],u,[g*x[0],g*x[1],0])),c.drawArrays(c.LINES,0,m.length)}c.uniform4f(f.u_color,0,0,0,1),c.uniformMatrix4fv(f.u_matrix,!1,u),c.drawArrays(c.LINES,0,m.length)}e.exports=function(t,e,r){if(t.isOpaquePass)return;if(!t.options.debug)return;for(var n=0;n<r.length;n++)c(t,e,r[n])}},{"../data/bucket":301,"../data/buffer":306,"../lib/debugtext":314,"../util/browser":398,"./vertex_array_object":329,"gl-matrix":198}],321:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units");function i(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s=a.bufferGroups.fill;if(s){var l,c=t.gl,u=r.paint["fill-pattern"];if(u)l=t.useProgram("pattern"),o(u,r.paint["fill-opacity"],i,n,t,l),c.activeTexture(c.TEXTURE0),t.spriteAtlas.bind(c,!0);else{var f=a.paintAttributes.fill[r.id];l=t.useProgram("fill",f.defines,f.vertexPragmas,f.fragmentPragmas),a.setUniforms(c,"fill",l,r,{zoom:t.transform.zoom})}c.uniformMatrix4fv(l.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),t.enableTileClippingMask(n);for(var h=0;h<s.length;h++){var d=s[h];d.vaos[r.id].bind(c,l,d.layoutVertexBuffer,d.elementBuffer,d.paintVertexBuffers[r.id]),c.drawElements(c.TRIANGLES,d.elementBuffer.length,c.UNSIGNED_SHORT,0)}}}}function a(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s,l=t.gl,c=a.bufferGroups.fill,u=r.paint["fill-pattern"],f=r.paint["fill-opacity"],h=r.getPaintProperty("fill-outline-color");if(u&&!h)s=t.useProgram("outlinepattern"),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight);else{var d=a.paintAttributes.fill[r.id];s=t.useProgram("outline",d.defines,d.vertexPragmas,d.fragmentPragmas),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight),l.uniform1f(s.u_opacity,f),a.setUniforms(l,"fill",s,r,{zoom:t.transform.zoom})}l.uniformMatrix4fv(s.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),u&&o(u,f,i,n,t,s),t.enableTileClippingMask(n);for(var p=0;p<c.length;p++){var m=c[p];m.secondVaos[r.id].bind(l,s,m.layoutVertexBuffer,m.elementBuffer2,m.paintVertexBuffers[r.id]),l.drawElements(l.LINES,2*m.elementBuffer2.length,l.UNSIGNED_SHORT,0)}}}function o(t,e,r,i,a,o){var s=a.gl,l=a.spriteAtlas.getPosition(t.from,!0),c=a.spriteAtlas.getPosition(t.to,!0);if(l&&c){s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,l.tl),s.uniform2fv(o.u_pattern_br_a,l.br),s.uniform2fv(o.u_pattern_tl_b,c.tl),s.uniform2fv(o.u_pattern_br_b,c.br),s.uniform1f(o.u_opacity,e),s.uniform1f(o.u_mix,t.t),s.uniform1f(o.u_tile_units_to_pixels,1/n(r,1,a.transform.tileZoom)),s.uniform2fv(o.u_pattern_size_a,l.size),s.uniform2fv(o.u_pattern_size_b,c.size),s.uniform1f(o.u_scale_a,t.fromScale),s.uniform1f(o.u_scale_b,t.toScale);var u=r.tileSize*Math.pow(2,a.transform.tileZoom-r.coord.z),f=u*(r.coord.x+i.w*Math.pow(2,r.coord.z)),h=u*r.coord.y;s.uniform2f(o.u_pixel_coord_upper,f>>16,h>>16),s.uniform2f(o.u_pixel_coord_lower,65535&f,65535&h),s.activeTexture(s.TEXTURE0),a.spriteAtlas.bind(s,!0)}}e.exports=function(t,e,r,n){var o,s=t.gl;s.enable(s.STENCIL_TEST),o=!r.paint["fill-pattern"]&&(r.isPaintValueFeatureConstant("fill-color")&&r.isPaintValueFeatureConstant("fill-opacity")&&1===r.paint["fill-color"][3]&&1===r.paint["fill-opacity"]);if(t.isOpaquePass===o){t.setDepthSublayer(1);for(var l=0;l<n.length;l++)i(t,e,r,n[l])}if(!t.isOpaquePass&&r.paint["fill-antialias"]){t.lineWidth(2),t.depthMask(!1);var c=r.getPaintProperty("fill-outline-color");(c||!r.paint["fill-pattern"])&&c?t.setDepthSublayer(2):t.setDepthSublayer(0);for(var u=0;u<n.length;u++)a(t,e,r,n[u])}}},{"../source/pixels_to_tile_units":335}],322:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat2,a=t("../source/pixels_to_tile_units");e.exports=function(t,e,r,o){if(!t.isOpaquePass){t.setDepthSublayer(0),t.depthMask(!1);var s=t.gl;if(s.enable(s.STENCIL_TEST),!(r.paint["line-width"]<=0)){var l=1/n.devicePixelRatio,c=r.paint["line-blur"]+l,u=r.paint["line-color"],f=t.transform,h=i.create();i.scale(h,h,[1,Math.cos(f._pitch)]),i.rotate(h,h,t.transform.angle);var d,p,m,v,g,y=Math.sqrt(f.height*f.height/4*(1+f.altitude*f.altitude)),b=(y+f.height/2*Math.tan(f._pitch))/y-1,x=r.paint["line-dasharray"],_=r.paint["line-pattern"];if(x)d=t.useProgram("linesdfpattern"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),p=t.lineAtlas.getDash(x.from,"round"===r.layout["line-cap"]),m=t.lineAtlas.getDash(x.to,"round"===r.layout["line-cap"]),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.lineAtlas.bind(s),s.uniform1f(d.u_tex_y_a,p.y),s.uniform1f(d.u_tex_y_b,m.y),s.uniform1f(d.u_mix,x.t),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h);else if(_){if(v=t.spriteAtlas.getPosition(_.from,!0),g=t.spriteAtlas.getPosition(_.to,!0),!v||!g)return;d=t.useProgram("linepattern"),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform2fv(d.u_pattern_tl_a,v.tl),s.uniform2fv(d.u_pattern_br_a,v.br),s.uniform2fv(d.u_pattern_tl_b,g.tl),s.uniform2fv(d.u_pattern_br_b,g.br),s.uniform1f(d.u_fade,_.t),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h)}else d=t.useProgram("line"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]);for(var w=0;w<o.length;w++){var M=o[w],k=e.getTile(M),A=k.getBucket(r);if(A){var T=A.bufferGroups.line;if(T){t.enableTileClippingMask(M);var E=t.translatePosMatrix(M.posMatrix,k,r.paint["line-translate"],r.paint["line-translate-anchor"]);s.uniformMatrix4fv(d.u_matrix,!1,E);var S=1/a(k,1,t.transform.zoom);if(x){var L=p.width*x.fromScale,C=m.width*x.toScale,P=[1/a(k,L,t.transform.tileZoom),-p.height/2],z=[1/a(k,C,t.transform.tileZoom),-m.height/2],O=t.lineAtlas.width/(256*Math.min(L,C)*n.devicePixelRatio)/2;s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_patternscale_a,P),s.uniform2fv(d.u_patternscale_b,z),s.uniform1f(d.u_sdfgamma,O)}else _?(s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_pattern_size_a,[a(k,v.size[0]*_.fromScale,t.transform.tileZoom),g.size[1]]),s.uniform2fv(d.u_pattern_size_b,[a(k,g.size[0]*_.toScale,t.transform.tileZoom),g.size[1]])):s.uniform1f(d.u_ratio,S);for(var D=0;D<T.length;D++){var I=T[D];I.vaos[r.id].bind(s,d,I.layoutVertexBuffer,I.elementBuffer),s.drawElements(s.TRIANGLES,3*I.elementBuffer.length,s.UNSIGNED_SHORT,0)}}}}}}}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"gl-matrix":198}],323:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/struct_array");function a(t,e,r,n){if(!t.isOpaquePass){var i=t.gl;i.enable(i.DEPTH_TEST),t.depthMask(!0),i.depthFunc(i.LESS);for(var a=n.length&&n[0].z,s=0;s<n.length;s++){var l=n[s];t.setDepthSublayer(l.z-a),o(t,e,r,l)}i.depthFunc(i.LEQUAL)}}function o(t,e,r,i){var a=t.gl;a.disable(a.STENCIL_TEST);var o,s,l=e.getTile(i),c=t.transform.calculatePosMatrix(i,e.maxzoom),u=t.useProgram("raster");a.uniformMatrix4fv(u.u_matrix,!1,c),a.uniform1f(u.u_brightness_low,r.paint["raster-brightness-min"]),a.uniform1f(u.u_brightness_high,r.paint["raster-brightness-max"]),a.uniform1f(u.u_saturation_factor,(o=r.paint["raster-saturation"])>0?1-1/(1.001-o):-o),a.uniform1f(u.u_contrast_factor,(s=r.paint["raster-contrast"])>0?1/(1-s):1+s),a.uniform3fv(u.u_spin_weights,function(t){t*=Math.PI/180;var e=Math.sin(t),r=Math.cos(t);return[(2*r+1)/3,(-Math.sqrt(3)*e-r+1)/3,(Math.sqrt(3)*e-r+1)/3]}(r.paint["raster-hue-rotate"]));var f,h,d=l.source&&l.source.findLoadedParent(i,0,{}),p=function(t,e,r,i){var a=[1,0],o=r.paint["raster-fade-duration"];if(t.source&&o>0){var s=(new Date).getTime(),l=(s-t.timeAdded)/o,c=e?(s-e.timeAdded)/o:-1,u=i.coveringZoomLevel(t.source),f=!!e&&Math.abs(e.coord.z-u)>Math.abs(t.coord.z-u);!e||f?(a[0]=n.clamp(l,0,1),a[1]=1-a[0]):(a[0]=n.clamp(1-c,0,1),a[1]=1-a[0])}var h=r.paint["raster-opacity"];return a[0]*=h,a[1]*=h,a}(l,d,r,t.transform);a.activeTexture(a.TEXTURE0),a.bindTexture(a.TEXTURE_2D,l.texture),a.activeTexture(a.TEXTURE1),d?(a.bindTexture(a.TEXTURE_2D,d.texture),f=Math.pow(2,d.coord.z-l.coord.z),h=[l.coord.x*f%1,l.coord.y*f%1]):(a.bindTexture(a.TEXTURE_2D,l.texture),p[1]=0),a.uniform2fv(u.u_tl_parent,h||[0,0]),a.uniform1f(u.u_scale_parent,f||1),a.uniform1f(u.u_buffer_scale,1),a.uniform1f(u.u_opacity0,p[0]),a.uniform1f(u.u_opacity1,p[1]),a.uniform1i(u.u_image0,0),a.uniform1i(u.u_image1,1);var m=l.boundsBuffer||t.rasterBoundsBuffer;(l.boundsVAO||t.rasterBoundsVAO).bind(a,u,m),a.drawArrays(a.TRIANGLE_STRIP,0,m.length)}e.exports=a,a.RasterBoundsArray=new i({members:[{name:"a_pos",type:"Int16",components:2},{name:"a_texture_pos",type:"Int16",components:2}]})},{"../util/struct_array":412,"../util/util":414}],324:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("./draw_collision_debug"),a=t("../source/pixels_to_tile_units");function o(t,e,r,n,i,a,o,l,c,u,f,h,d,p,m){for(var v=0;v<n.length;v++){var g=e.getTile(n[v]),y=g.getBucket(r);if(y){var b=y.bufferGroups,x=i?b.glyph:b.icon;x.length&&(t.enableTileClippingMask(n[v]),s(t,r,n[v].posMatrix,g,y,x,i,i||y.sdfIcons,!i&&y.iconsNeedLinear,i?y.adjustedTextSize:y.adjustedIconSize,y.fontstack,a,o,l,c,u,f,h,d,p,m))}}}function s(t,e,r,i,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w){var M,k,A,T=t.gl,E=t.transform,S="map"===m,L="map"===v,C=l?24:1,P=g/C;if(L?(k=a(i,1,t.transform.zoom)*P,A=1/Math.cos(E._pitch),M=[k,k]):(k=t.transform.altitude*P,A=1,M=[E.pixelsToGLUnits[0]*k,E.pixelsToGLUnits[1]*k]),l||t.style.sprite.loaded()){var z=t.useProgram(c?"sdf":"icon");if(T.uniformMatrix4fv(z.u_matrix,!1,t.translatePosMatrix(r,i,d,p)),T.uniform1i(z.u_rotate_with_map,S),T.uniform1i(z.u_pitch_with_map,L),T.uniform2fv(z.u_extrude_scale,M),T.activeTexture(T.TEXTURE0),T.uniform1i(z.u_texture,0),l){var O=h&&t.glyphSource.getGlyphAtlas(h);if(!O)return;O.updateTexture(T),T.uniform2f(z.u_texsize,O.width/4,O.height/4)}else{var D=t.options.rotating||t.options.zooming,I=1!==P||n.devicePixelRatio!==t.spriteAtlas.pixelRatio||u,R=L||t.transform.pitch;t.spriteAtlas.bind(T,c||D||I||R),T.uniform2f(z.u_texsize,t.spriteAtlas.width/4,t.spriteAtlas.height/4)}var N,F=Math.log(g/f)/Math.LN2||0;if(T.uniform1f(z.u_zoom,10*(t.transform.zoom-F)),T.activeTexture(T.TEXTURE1),t.frameHistory.bind(T),T.uniform1i(z.u_fadetexture,1),c){var j=.105*C/g/n.devicePixelRatio;if(y){T.uniform1f(z.u_gamma,(1.19*x/P/8+j)*A),T.uniform4fv(z.u_color,b),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,(6-y/P)/8);for(var B=0;B<s.length;B++)(N=s[B]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}T.uniform1f(z.u_gamma,j*A),T.uniform4fv(z.u_color,w),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,.75),T.uniform1f(z.u_pitch,E.pitch/360*2*Math.PI),T.uniform1f(z.u_bearing,E.bearing/360*2*Math.PI),T.uniform1f(z.u_aspect_ratio,E.width/E.height);for(var U=0;U<s.length;U++)(N=s[U]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}else{T.uniform1f(z.u_opacity,_);for(var V=0;V<s.length;V++)(N=s[V]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}}}e.exports=function(t,e,r,n){if(t.isOpaquePass)return;var a=!(r.layout["text-allow-overlap"]||r.layout["icon-allow-overlap"]||r.layout["text-ignore-placement"]||r.layout["icon-ignore-placement"]),s=t.gl;a?s.disable(s.STENCIL_TEST):s.enable(s.STENCIL_TEST);t.setDepthSublayer(0),t.depthMask(!1),s.disable(s.DEPTH_TEST),o(t,e,r,n,!1,r.paint["icon-translate"],r.paint["icon-translate-anchor"],r.layout["icon-rotation-alignment"],r.layout["icon-rotation-alignment"],r.layout["icon-size"],r.paint["icon-halo-width"],r.paint["icon-halo-color"],r.paint["icon-halo-blur"],r.paint["icon-opacity"],r.paint["icon-color"]),o(t,e,r,n,!0,r.paint["text-translate"],r.paint["text-translate-anchor"],r.layout["text-rotation-alignment"],r.layout["text-pitch-alignment"],r.layout["text-size"],r.paint["text-halo-width"],r.paint["text-halo-color"],r.paint["text-halo-blur"],r.paint["text-opacity"],r.paint["text-color"]),s.enable(s.DEPTH_TEST),e.map.showCollisionBoxes&&i(t,e,r,n)}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"./draw_collision_debug":319}],325:[function(t,e,r){"use strict";function n(){this.changeTimes=new Float64Array(256),this.changeOpacities=new Uint8Array(256),this.opacities=new Uint8ClampedArray(256),this.array=new Uint8Array(this.opacities.buffer),this.fadeDuration=300,this.previousZoom=0,this.firstFrame=!0}e.exports=n,n.prototype.record=function(t){var e,r=Date.now();if(this.firstFrame&&(r=0,this.firstFrame=!1),(t=Math.floor(10*t))<this.previousZoom)for(e=t+1;e<=this.previousZoom;e++)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];else for(e=t;e>this.previousZoom;e--)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];for(e=0;e<256;e++){var n=(r-this.changeTimes[e])/this.fadeDuration*255;this.opacities[e]=e<=t?this.changeOpacities[e]+n:this.changeOpacities[e]-n}this.changed=!0,this.previousZoom=t},n.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.changed&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,256,1,t.ALPHA,t.UNSIGNED_BYTE,this.array),this.changed=!1)):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,256,1,0,t.ALPHA,t.UNSIGNED_BYTE,this.array))}},{}],326:[function(t,e,r){"use strict";var n=t("../util/util");function i(t,e){this.width=t,this.height=e,this.nextRow=0,this.bytes=4,this.data=new Uint8Array(this.width*this.height*this.bytes),this.positions={}}e.exports=i,i.prototype.setSprite=function(t){this.sprite=t},i.prototype.getDash=function(t,e){var r=t.join(",")+e;return this.positions[r]||(this.positions[r]=this.addDash(t,e)),this.positions[r]},i.prototype.addDash=function(t,e){var r=e?7:0,i=2*r+1;if(this.nextRow+i>this.height)return n.warnOnce("LineAtlas out of space"),null;for(var a=0,o=0;o<t.length;o++)a+=t[o];for(var s=this.width/a,l=s/2,c=t.length%2==1,u=-r;u<=r;u++)for(var f=this.nextRow+r+u,h=this.width*f,d=c?-t[t.length-1]:0,p=t[0],m=1,v=0;v<this.width;v++){for(;p<v/s;)d=p,p+=t[m],c&&m===t.length-1&&(p+=t[0]),m++;var g,y=Math.abs(v-d*s),b=Math.abs(v-p*s),x=Math.min(y,b),_=m%2==1;if(e){var w=r?u/r*(l+1):0;if(_){var M=l-Math.abs(w);g=Math.sqrt(x*x+M*M)}else g=l-Math.sqrt(x*x+w*w)}else g=(_?1:-1)*x;this.data[3+4*(h+v)]=Math.max(0,Math.min(255,g+128))}var k={y:(this.nextRow+r+.5)/this.height,height:2*r/this.height,width:a};return this.nextRow+=i,this.dirty=!0,k},i.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.dirty&&(this.dirty=!1,t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.RGBA,t.UNSIGNED_BYTE,this.data))):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width,this.height,0,t.RGBA,t.UNSIGNED_BYTE,this.data))}},{"../util/util":414}],327:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat4,a=t("./frame_history"),o=t("../source/source_cache"),s=t("../data/bucket").EXTENT,l=t("../source/pixels_to_tile_units"),c=t("../util/util"),u=t("../util/struct_array"),f=t("../data/buffer"),h=t("./vertex_array_object"),d=t("./draw_raster").RasterBoundsArray,p=t("./create_uniform_pragmas");function m(t,e){this.gl=t,this.transform=e,this.reusableTextures={},this.preFbos={},this.frameHistory=new a,this.setup(),this.numSublayers=o.maxUnderzooming+o.maxOverzooming+1,this.depthEpsilon=1/Math.pow(2,16),this.lineWidthRange=t.getParameter(t.ALIASED_LINE_WIDTH_RANGE)}e.exports=m,c.extend(m.prototype,t("./painter/use_program")),m.prototype.resize=function(t,e){var r=this.gl;this.width=t*n.devicePixelRatio,this.height=e*n.devicePixelRatio,r.viewport(0,0,this.width,this.height)},m.prototype.setup=function(){var t=this.gl;t.verbose=!0,t.enable(t.BLEND),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),t.enable(t.STENCIL_TEST),t.enable(t.DEPTH_TEST),t.depthFunc(t.LEQUAL),this._depthMask=!1,t.depthMask(!1);var e=this.PosArray=new u({members:[{name:"a_pos",type:"Int16",components:2}]}),r=new e;r.emplaceBack(0,0),r.emplaceBack(s,0),r.emplaceBack(0,s),r.emplaceBack(s,s),this.tileExtentBuffer=new f(r.serialize(),e.serialize(),f.BufferType.VERTEX),this.tileExtentVAO=new h,this.tileExtentPatternVAO=new h;var n=new e;n.emplaceBack(0,0),n.emplaceBack(s,0),n.emplaceBack(s,s),n.emplaceBack(0,s),n.emplaceBack(0,0),this.debugBuffer=new f(n.serialize(),e.serialize(),f.BufferType.VERTEX),this.debugVAO=new h;var i=new d;i.emplaceBack(0,0,0,0),i.emplaceBack(s,0,32767,0),i.emplaceBack(0,s,0,32767),i.emplaceBack(s,s,32767,32767),this.rasterBoundsBuffer=new f(i.serialize(),d.serialize(),f.BufferType.VERTEX),this.rasterBoundsVAO=new h},m.prototype.clearColor=function(){var t=this.gl;t.clearColor(0,0,0,0),t.clear(t.COLOR_BUFFER_BIT)},m.prototype.clearStencil=function(){var t=this.gl;t.clearStencil(0),t.stencilMask(255),t.clear(t.STENCIL_BUFFER_BIT)},m.prototype.clearDepth=function(){var t=this.gl;t.clearDepth(1),this.depthMask(!0),t.clear(t.DEPTH_BUFFER_BIT)},m.prototype._renderTileClippingMasks=function(t){var e=this.gl;e.colorMask(!1,!1,!1,!1),this.depthMask(!1),e.disable(e.DEPTH_TEST),e.enable(e.STENCIL_TEST),e.stencilMask(248),e.stencilOp(e.KEEP,e.KEEP,e.REPLACE);var r=1;this._tileClippingMaskIDs={};for(var n=0;n<t.length;n++){var i=t[n],a=this._tileClippingMaskIDs[i.id]=r++<<3;e.stencilFunc(e.ALWAYS,a,248);var o=p([{name:"u_color",components:4},{name:"u_opacity",components:1}]),s=this.useProgram("fill",[],o,o);e.uniformMatrix4fv(s.u_matrix,!1,i.posMatrix),this.tileExtentVAO.bind(e,s,this.tileExtentBuffer),e.drawArrays(e.TRIANGLE_STRIP,0,this.tileExtentBuffer.length)}e.stencilMask(0),e.colorMask(!0,!0,!0,!0),this.depthMask(!0),e.enable(e.DEPTH_TEST)},m.prototype.enableTileClippingMask=function(t){var e=this.gl;e.stencilFunc(e.EQUAL,this._tileClippingMaskIDs[t.id],248)},m.prototype.prepareBuffers=function(){},m.prototype.bindDefaultFramebuffer=function(){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,null)};var v={symbol:t("./draw_symbol"),circle:t("./draw_circle"),line:t("./draw_line"),fill:t("./draw_fill"),raster:t("./draw_raster"),background:t("./draw_background"),debug:t("./draw_debug")};m.prototype.render=function(t,e){this.style=t,this.options=e,this.lineAtlas=t.lineAtlas,this.spriteAtlas=t.spriteAtlas,this.spriteAtlas.setSprite(t.sprite),this.glyphSource=t.glyphSource,this.frameHistory.record(this.transform.zoom),this.prepareBuffers(),this.clearColor(),this.clearDepth(),this.showOverdrawInspector(e.showOverdrawInspector),this.depthRange=(t._order.length+2)*this.numSublayers*this.depthEpsilon,this.renderPass({isOpaquePass:!0}),this.renderPass({isOpaquePass:!1})},m.prototype.renderPass=function(t){var e=this.style._groups,r=t.isOpaquePass;this.currentLayer=r?this.style._order.length:-1;for(var n=0;n<e.length;n++){var i,a=e[r?e.length-1-n:n],o=this.style.sources[a.source],s=[];if(o){for(s=o.getVisibleCoordinates(),i=0;i<s.length;i++)s[i].posMatrix=this.transform.calculatePosMatrix(s[i],o.maxzoom);this.clearStencil(),o.prepare&&o.prepare(),o.isTileClipped&&this._renderTileClippingMasks(s)}for(r?(this._showOverdrawInspector||this.gl.disable(this.gl.BLEND),this.isOpaquePass=!0):(this.gl.enable(this.gl.BLEND),this.isOpaquePass=!1,s.reverse()),i=0;i<a.length;i++){var l=a[r?a.length-1-i:i];this.currentLayer+=r?-1:1,this.renderLayer(this,o,l,s)}o&&v.debug(this,o,s)}},m.prototype.depthMask=function(t){t!==this._depthMask&&(this._depthMask=t,this.gl.depthMask(t))},m.prototype.renderLayer=function(t,e,r,n){r.isHidden(this.transform.zoom)||("background"===r.type||n.length)&&(this.id=r.id,v[r.type](t,e,r,n))},m.prototype.setDepthSublayer=function(t){var e=1-((1+this.currentLayer)*this.numSublayers+t)*this.depthEpsilon,r=e-1+this.depthRange;this.gl.depthRange(r,e)},m.prototype.translatePosMatrix=function(t,e,r,n){if(!r[0]&&!r[1])return t;if("viewport"===n){var a=Math.sin(-this.transform.angle),o=Math.cos(-this.transform.angle);r=[r[0]*o-r[1]*a,r[0]*a+r[1]*o]}var s=[l(e,r[0],this.transform.zoom),l(e,r[1],this.transform.zoom),0],c=new Float32Array(16);return i.translate(c,t,s),c},m.prototype.saveTexture=function(t){var e=this.reusableTextures[t.size];e?e.push(t):this.reusableTextures[t.size]=[t]},m.prototype.getTexture=function(t){var e=this.reusableTextures[t];return e&&e.length>0?e.pop():null},m.prototype.lineWidth=function(t){this.gl.lineWidth(c.clamp(t,this.lineWidthRange[0],this.lineWidthRange[1]))},m.prototype.showOverdrawInspector=function(t){if(t||this._showOverdrawInspector){this._showOverdrawInspector=t;var e=this.gl;if(t){e.blendFunc(e.CONSTANT_COLOR,e.ONE);e.blendColor(1/8,1/8,1/8,0),e.clearColor(0,0,0,1),e.clear(e.COLOR_BUFFER_BIT)}else e.blendFunc(e.ONE,e.ONE_MINUS_SRC_ALPHA)}}},{"../data/bucket":301,"../data/buffer":306,"../source/pixels_to_tile_units":335,"../source/source_cache":339,"../util/browser":398,"../util/struct_array":412,"../util/util":414,"./create_uniform_pragmas":316,"./draw_background":317,"./draw_circle":318,"./draw_debug":320,"./draw_fill":321,"./draw_line":322,"./draw_raster":323,"./draw_symbol":324,"./frame_history":325,"./painter/use_program":328,"./vertex_array_object":329,"gl-matrix":198}],328:[function(t,e,r){"use strict";var n=t("assert"),i=t("../../util/util"),a=t("mapbox-gl-shaders"),o=a.util;function s(t,e){return t.replace(/#pragma mapbox: ([\w]+) ([\w]+) ([\w]+) ([\w]+)/g,function(t,r,n,i,a){return e[r][a].replace(/{type}/g,i).replace(/{precision}/g,n)})}e.exports._createProgram=function(t,e,r,l){for(var c=this.gl,u=c.createProgram(),f=a[t],h="#define MAPBOX_GL_JS;\n",d=0;d<e.length;d++)h+="#define "+e[d]+";\n";var p=c.createShader(c.FRAGMENT_SHADER);c.shaderSource(p,s(h+f.fragmentSource,l)),c.compileShader(p),n(c.getShaderParameter(p,c.COMPILE_STATUS),c.getShaderInfoLog(p)),c.attachShader(u,p);var m=c.createShader(c.VERTEX_SHADER);c.shaderSource(m,s(h+o+f.vertexSource,r)),c.compileShader(m),n(c.getShaderParameter(m,c.COMPILE_STATUS),c.getShaderInfoLog(m)),c.attachShader(u,m),c.linkProgram(u),n(c.getProgramParameter(u,c.LINK_STATUS),c.getProgramInfoLog(u));for(var v={},g=c.getProgramParameter(u,c.ACTIVE_ATTRIBUTES),y=0;y<g;y++){var b=c.getActiveAttrib(u,y);v[b.name]=c.getAttribLocation(u,b.name)}for(var x={},_=c.getProgramParameter(u,c.ACTIVE_UNIFORMS),w=0;w<_;w++){var M=c.getActiveUniform(u,w);x[M.name]=c.getUniformLocation(u,M.name)}return i.extend({program:u,definition:f,attributes:v,numAttributes:g},v,x)},e.exports._createProgramCached=function(t,e,r,n){this.cache=this.cache||{};var i=JSON.stringify({name:t,defines:e,vertexPragmas:r,fragmentPragmas:n});return this.cache[i]||(this.cache[i]=this._createProgram(t,e,r,n)),this.cache[i]},e.exports.useProgram=function(t,e,r,n){var i=this.gl;e=e||[],this._showOverdrawInspector&&(e=e.concat("OVERDRAW_INSPECTOR"));var a=this._createProgramCached(t,e,r,n);return this.currentProgram!==a&&(i.useProgram(a.program),this.currentProgram=a),a}},{"../../util/util":414,assert:51,"mapbox-gl-shaders":275}],329:[function(t,e,r){"use strict";var n=t("assert");function i(){this.boundProgram=null,this.boundVertexBuffer=null,this.boundVertexBuffer2=null,this.boundElementBuffer=null,this.vao=null}e.exports=i,i.prototype.bind=function(t,e,r,n,i){void 0===t.extVertexArrayObject&&(t.extVertexArrayObject=t.getExtension("OES_vertex_array_object"));var a=!this.vao||this.boundProgram!==e||this.boundVertexBuffer!==r||this.boundVertexBuffer2!==i||this.boundElementBuffer!==n;!t.extVertexArrayObject||a?this.freshBind(t,e,r,n,i):t.extVertexArrayObject.bindVertexArrayOES(this.vao)},i.prototype.freshBind=function(t,e,r,i,a){var o,s=e.numAttributes;if(t.extVertexArrayObject)this.vao&&this.destroy(t),this.vao=t.extVertexArrayObject.createVertexArrayOES(),t.extVertexArrayObject.bindVertexArrayOES(this.vao),o=0,this.boundProgram=e,this.boundVertexBuffer=r,this.boundVertexBuffer2=a,this.boundElementBuffer=i;else{o=t.currentNumAttributes||0;for(var l=s;l<o;l++)n(0!==l),t.disableVertexAttribArray(l)}for(var c=o;c<s;c++)t.enableVertexAttribArray(c);r.bind(t),r.setVertexAttribPointers(t,e),a&&(a.bind(t),a.setVertexAttribPointers(t,e)),i&&i.bind(t),t.currentNumAttributes=s},i.prototype.unbind=function(t){var e=t.extVertexArrayObject;e&&e.bindVertexArrayOES(null)},i.prototype.destroy=function(t){var e=t.extVertexArrayObject;e&&this.vao&&(e.deleteVertexArrayOES(this.vao),this.vao=null)}},{assert:51}],330:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("resolve-url"),o=t("../data/bucket").EXTENT;function s(t,e,r){e=e||{},this.id=t,this.dispatcher=r,this._data=e.data,void 0!==e.maxzoom&&(this.maxzoom=e.maxzoom),e.type&&(this.type=e.type);var n=o/this.tileSize;this.workerOptions=i.extend({source:this.id,cluster:e.cluster||!1,geojsonVtOptions:{buffer:(void 0!==e.buffer?e.buffer:128)*n,tolerance:(void 0!==e.tolerance?e.tolerance:.375)*n,extent:o,maxZoom:this.maxzoom},superclusterOptions:{maxZoom:Math.min(e.clusterMaxZoom,this.maxzoom-1)||this.maxzoom-1,extent:o,radius:(e.clusterRadius||50)*n,log:!1}},e.workerOptions),this._updateWorkerData(function(t){t?this.fire("error",{error:t}):this.fire("load")}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{type:"geojson",minzoom:0,maxzoom:18,tileSize:512,isTileClipped:!0,reparseOverscaled:!0,onAdd:function(t){this.map=t},setData:function(t){return this._data=t,this._updateWorkerData(function(t){if(t)return this.fire("error",{error:t});this.fire("change")}.bind(this)),this},_updateWorkerData:function(t){var e=i.extend({},this.workerOptions),r=this._data;"string"==typeof r?e.url="undefined"!=typeof window?a(window.location.href,r):r:e.data=JSON.stringify(r),this.workerID=this.dispatcher.send(this.type+".loadData",e,function(e){this._loaded=!0,t(e)}.bind(this))},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={type:this.type,uid:t.uid,coord:t.coord,zoom:t.coord.z,maxZoom:this.maxzoom,tileSize:this.tileSize,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};t.workerID=this.dispatcher.send("load tile",n,function(r,n){if(t.unloadVectorData(this.map.painter),!t.aborted)return r?e(r):(t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null))}.bind(this),this.workerID)},abortTile:function(t){t.aborted=!0},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},function(){},t.workerID)},serialize:function(){return{type:this.type,data:this._data}}})},{"../data/bucket":301,"../util/evented":406,"../util/util":414,"resolve-url":488}],331:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("geojson-rewind"),o=t("./geojson_wrapper"),s=t("vt-pbf"),l=t("supercluster"),c=t("geojson-vt"),u=t("./vector_tile_worker_source");function f(t,e,r){r&&(this.loadGeoJSON=r),u.call(this,t,e)}e.exports=f,f.prototype=n.inherit(u,{_geoJSONIndexes:{},loadVectorData:function(t,e){var r=t.source,n=t.coord;if(!this._geoJSONIndexes[r])return e(null,null);var i=this._geoJSONIndexes[r].getTile(Math.min(n.z,t.maxZoom),n.x,n.y);if(!i)return e(null,null);var a=new o(i.features);a.name="_geojsonTileLayer";var l=s({layers:{_geojsonTileLayer:a}});0===l.byteOffset&&l.byteLength===l.buffer.byteLength||(l=new Uint8Array(l)),e(null,{tile:a,rawTileData:l.buffer})},loadData:function(t,e){var r=function(r,n){return r?e(r):"object"!=typeof n?e(new Error("Input data is not a valid GeoJSON object.")):(a(n,!0),void this._indexData(n,t,function(r,n){if(r)return e(r);this._geoJSONIndexes[t.source]=n,e(null)}.bind(this)))}.bind(this);this.loadGeoJSON(t,r)},loadGeoJSON:function(t,e){if(t.url)i.getJSON(t.url,e);else{if("string"!=typeof t.data)return e(new Error("Input data is not a valid GeoJSON object."));try{return e(null,JSON.parse(t.data))}catch(t){return e(new Error("Input data is not a valid GeoJSON object."))}}},_indexData:function(t,e,r){try{e.cluster?r(null,l(e.superclusterOptions).load(t.features)):r(null,c(t,e.geojsonVtOptions))}catch(t){return r(t)}}})},{"../util/ajax":397,"../util/util":414,"./geojson_wrapper":332,"./vector_tile_worker_source":343,"geojson-rewind":147,"geojson-vt":151,supercluster:518,"vt-pbf":550}],332:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("vector-tile").VectorTileFeature,a=t("../data/bucket").EXTENT;function o(t){this.features=t,this.length=t.length,this.extent=a}function s(t){if(this.type=t.type,1===t.type){this.rawGeometry=[];for(var e=0;e<t.geometry.length;e++)this.rawGeometry.push([t.geometry[e]])}else this.rawGeometry=t.geometry;this.properties=t.tags,this.extent=a}e.exports=o,o.prototype.feature=function(t){return new s(this.features[t])},s.prototype.loadGeometry=function(){var t=this.rawGeometry;this.geometry=[];for(var e=0;e<t.length;e++){for(var r=t[e],i=[],a=0;a<r.length;a++)i.push(new n(r[a][0],r[a][1]));this.geometry.push(i)}return this.geometry},s.prototype.bbox=function(){this.geometry||this.loadGeometry();for(var t=this.geometry,e=1/0,r=-1/0,n=1/0,i=-1/0,a=0;a<t.length;a++)for(var o=t[a],s=0;s<o.length;s++){var l=o[s];e=Math.min(e,l.x),r=Math.max(r,l.x),n=Math.min(n,l.y),i=Math.max(i,l.y)}return[e,n,r,i]},s.prototype.toGeoJSON=i.prototype.toGeoJSON},{"../data/bucket":301,"point-geometry":458,"vector-tile":544}],333:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e,r){this.id=t,this.dispatcher=r,this.url=e.url,this.coordinates=e.coordinates,l.getImage(e.url,function(t,r){if(t)return this.fire("error",{error:t});this.image=r,this.image.addEventListener("load",function(){this.map._rerender()}.bind(this)),this._loaded=!0,this.fire("load"),this.map&&this.setCoordinates(e.coordinates)}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,onAdd:function(t){this.map=t,this.image&&this.setCoordinates(this.coordinates)},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(this._loaded&&this.image&&this.image.complete&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.image)):(this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.image))}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"image",urls:this.url,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],334:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSourceURL;e.exports=function(t,e){var r=function(t,r){if(t)return e(t);var i=n.pick(r,["tiles","minzoom","maxzoom","attribution"]);r.vector_layers&&(i.vectorLayers=r.vector_layers,i.vectorLayerIds=i.vectorLayers.map(function(t){return t.id})),e(null,i)};t.url?i.getJSON(o(t.url),r):a.frame(r.bind(null,null,t))}},{"../util/ajax":397,"../util/browser":398,"../util/mapbox":411,"../util/util":414}],335:[function(t,e,r){"use strict";var n=t("../data/bucket");e.exports=function(t,e,r){return e*(n.EXTENT/(t.tileSize*Math.pow(2,r-t.coord.z)))}},{"../data/bucket":301}],336:[function(t,e,r){"use strict";var n=t("./tile_coord");function i(t,e){var r=t.coord,n=e.coord;return r.z-n.z||r.y-n.y||r.w-n.w||r.x-n.x}r.rendered=function(t,e,r,n,a,o){var s=t.tilesIn(r);s.sort(i);for(var l=[],c=0;c<s.length;c++){var u=s[c];u.tile.featureIndex&&l.push(u.tile.featureIndex.query({queryGeometry:u.queryGeometry,scale:u.scale,tileSize:u.tile.tileSize,bearing:o,params:n},e))}return function(t){for(var e=t[0]||{},r=1;r<t.length;r++){var n=t[r];for(var i in n){var a=n[i],o=e[i];if(void 0===o)o=e[i]=a;else for(var s=0;s<a.length;s++)o.push(a[s])}}return e}(l)},r.source=function(t,e){for(var r=t.getRenderableIds().map(function(e){return t.getTileByID(e)}),i=[],a={},o=0;o<r.length;o++){var s=r[o],l=new n(Math.min(s.sourceMaxZoom,s.coord.z),s.coord.x,s.coord.y,0).id;a[l]||(a[l]=!0,s.querySourceFeatures(i,e))}return i}},{"./tile_coord":341}],337:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/evented"),o=t("./load_tilejson"),s=t("../util/mapbox").normalizeTileURL;function l(t,e,r){this.id=t,this.dispatcher=r,n.extend(this,n.pick(e,["url","scheme","tileSize"])),o(e,function(t,e){if(t)return this.fire("error",t);n.extend(this,e),this.fire("load")}.bind(this))}e.exports=l,l.prototype=n.inherit(a,{minzoom:0,maxzoom:22,roundZoom:!0,scheme:"xyz",tileSize:512,_loaded:!1,onAdd:function(t){this.map=t},serialize:function(){return{type:"raster",url:this.url,tileSize:this.tileSize}},loadTile:function(t,e){var r=s(t.coord.url(this.tiles,null,this.scheme),this.url,this.tileSize);t.request=i.getImage(r,function(r,n){if(delete t.request,t.aborted)return;if(r)return e(r);var i=this.map.painter.gl;t.texture=this.map.painter.getTexture(n.width),t.texture?(i.bindTexture(i.TEXTURE_2D,t.texture),i.texSubImage2D(i.TEXTURE_2D,0,0,0,i.RGBA,i.UNSIGNED_BYTE,n)):(t.texture=i.createTexture(),i.bindTexture(i.TEXTURE_2D,t.texture),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MIN_FILTER,i.LINEAR_MIPMAP_NEAREST),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MAG_FILTER,i.LINEAR),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_S,i.CLAMP_TO_EDGE),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_T,i.CLAMP_TO_EDGE),i.pixelStorei(i.UNPACK_PREMULTIPLY_ALPHA_WEBGL,!0),i.texImage2D(i.TEXTURE_2D,0,i.RGBA,i.RGBA,i.UNSIGNED_BYTE,n),t.texture.size=n.width);i.generateMipmap(i.TEXTURE_2D),this.map.animationLoop.set(this.map.style.rasterFadeDuration),t.state="loaded",e(null)}.bind(this))},abortTile:function(t){t.request&&(t.request.abort(),delete t.request)},unloadTile:function(t){t.texture&&this.map.painter.saveTexture(t.texture)}})},{"../util/ajax":397,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],338:[function(t,e,r){"use strict";var n=t("../util/util"),i={vector:t("../source/vector_tile_source"),raster:t("../source/raster_tile_source"),geojson:t("../source/geojson_source"),video:t("../source/video_source"),image:t("../source/image_source")};r.create=function(t,e,r){if((e=new i[e.type](t,e,r)).id!==t)throw new Error("Expected Source id to be "+t+" instead of "+e.id);return n.bindAll(["load","abort","unload","serialize","prepare"],e),e},r.getType=function(t){return i[t]},r.setType=function(t,e){i[t]=e}},{"../source/geojson_source":330,"../source/image_source":333,"../source/raster_tile_source":337,"../source/vector_tile_source":342,"../source/video_source":344,"../util/util":414}],339:[function(t,e,r){"use strict";var n=t("./source"),i=t("./tile"),a=t("../util/evented"),o=t("./tile_coord"),s=t("../util/lru_cache"),l=t("../geo/coordinate"),c=t("../util/util"),u=t("../data/bucket").EXTENT;function f(t,e,r){this.id=t,this.dispatcher=r;var i=this._source=n.create(t,e,r).on("load",function(){this.map&&this._source.onAdd&&this._source.onAdd(this.map),this._sourceLoaded=!0,this.tileSize=i.tileSize,this.minzoom=i.minzoom,this.maxzoom=i.maxzoom,this.roundZoom=i.roundZoom,this.reparseOverscaled=i.reparseOverscaled,this.isTileClipped=i.isTileClipped,this.attribution=i.attribution,this.vectorLayerIds=i.vectorLayerIds,this.fire("load")}.bind(this)).on("error",function(t){this._sourceErrored=!0,this.fire("error",t)}.bind(this)).on("change",function(){this.reload(),this.transform&&this.update(this.transform,this.map&&this.map.style.rasterFadeDuration),this.fire("change")}.bind(this));this._tiles={},this._cache=new s(0,this.unloadTile.bind(this)),this._isIdRenderable=this._isIdRenderable.bind(this)}function h(t,e,r){var n=r.zoomTo(Math.min(t.z,e));return{x:(n.column-(t.x+t.w*Math.pow(2,t.z)))*u,y:(n.row-t.y)*u}}function d(t,e){return t%32-e%32}e.exports=f,f.maxOverzooming=10,f.maxUnderzooming=3,f.prototype=c.inherit(a,{onAdd:function(t){this.map=t,this._source&&this._source.onAdd&&this._source.onAdd(t)},loaded:function(){if(this._sourceErrored)return!0;if(!this._sourceLoaded)return!1;for(var t in this._tiles){var e=this._tiles[t];if("loaded"!==e.state&&"errored"!==e.state)return!1}return!0},getSource:function(){return this._source},loadTile:function(t,e){return this._source.loadTile(t,e)},unloadTile:function(t){if(this._source.unloadTile)return this._source.unloadTile(t)},abortTile:function(t){if(this._source.abortTile)return this._source.abortTile(t)},serialize:function(){return this._source.serialize()},prepare:function(){if(this._sourceLoaded&&this._source.prepare)return this._source.prepare()},getIds:function(){return Object.keys(this._tiles).map(Number).sort(d)},getRenderableIds:function(){return this.getIds().filter(this._isIdRenderable)},_isIdRenderable:function(t){return this._tiles[t].isRenderable()&&!this._coveredTiles[t]},reload:function(){for(var t in this._cache.reset(),this._tiles){var e=this._tiles[t];"loading"!==e.state&&(e.state="reloading"),this.loadTile(this._tiles[t],this._tileLoaded.bind(this,this._tiles[t]))}},_tileLoaded:function(t,e){if(e)return t.state="errored",this.fire("tile.error",{tile:t,error:e}),void this._source.fire("tile.error",{tile:t,error:e});t.source=this,t.timeAdded=(new Date).getTime(),this.fire("tile.load",{tile:t}),this._source.fire("tile.load",{tile:t})},getTile:function(t){return this.getTileByID(t.id)},getTileByID:function(t){return this._tiles[t]},getZoom:function(t){return t.zoom+t.scaleZoom(t.tileSize/this.tileSize)},findLoadedChildren:function(t,e,r){var n=!1;for(var i in this._tiles){var a=this._tiles[i];if(!(r[i]||!a.isRenderable()||a.coord.z<=t.z||a.coord.z>e)){var o=Math.pow(2,Math.min(a.coord.z,this.maxzoom)-Math.min(t.z,this.maxzoom));if(Math.floor(a.coord.x/o)===t.x&&Math.floor(a.coord.y/o)===t.y)for(r[i]=!0,n=!0;a&&a.coord.z-1>t.z;){var s=a.coord.parent(this.maxzoom).id;(a=this._tiles[s])&&a.isRenderable()&&(delete r[i],r[s]=!0)}}}return n},findLoadedParent:function(t,e,r){for(var n=t.z-1;n>=e;n--){t=t.parent(this.maxzoom);var i=this._tiles[t.id];if(i&&i.isRenderable())return r[t.id]=!0,i;if(this._cache.has(t.id))return this.addTile(t),r[t.id]=!0,this._tiles[t.id]}},updateCacheSize:function(t){var e=(Math.ceil(t.width/t.tileSize)+1)*(Math.ceil(t.height/t.tileSize)+1);this._cache.setMaxSize(Math.floor(5*e))},update:function(t,e){if(this._sourceLoaded){var r,n,i;this.updateCacheSize(t);var a=(this.roundZoom?Math.round:Math.floor)(this.getZoom(t)),s=Math.max(a-f.maxOverzooming,this.minzoom),l=Math.max(a+f.maxUnderzooming,this.minzoom),u={},h=(new Date).getTime();this._coveredTiles={};var d=this.used?t.coveringTiles(this._source):[];for(r=0;r<d.length;r++)n=d[r],i=this.addTile(n),u[n.id]=!0,i.isRenderable()||this.findLoadedChildren(n,l,u)||this.findLoadedParent(n,s,u);for(var p,m={},v=Object.keys(u),g=0;g<v.length;g++){var y=v[g];n=o.fromID(y),(i=this._tiles[y])&&i.timeAdded>h-(e||0)&&(this.findLoadedChildren(n,l,u)&&(u[y]=!0),this.findLoadedParent(n,s,m))}for(p in m)u[p]||(this._coveredTiles[p]=!0);for(p in m)u[p]=!0;var b=c.keysDifference(this._tiles,u);for(r=0;r<b.length;r++)this.removeTile(+b[r]);this.transform=t}},addTile:function(t){var e=this._tiles[t.id];if(e)return e;var r=t.wrapped();if((e=this._tiles[r.id])||(e=this._cache.get(r.id))&&this._redoPlacement&&this._redoPlacement(e),!e){var n=t.z,a=n>this.maxzoom?Math.pow(2,n-this.maxzoom):1;e=new i(r,this.tileSize*a,this.maxzoom),this.loadTile(e,this._tileLoaded.bind(this,e))}return e.uses++,this._tiles[t.id]=e,this.fire("tile.add",{tile:e}),this._source.fire("tile.add",{tile:e}),e},removeTile:function(t){var e=this._tiles[t];e&&(e.uses--,delete this._tiles[t],this.fire("tile.remove",{tile:e}),this._source.fire("tile.remove",{tile:e}),e.uses>0||(e.isRenderable()?this._cache.add(e.coord.wrapped().id,e):(e.aborted=!0,this.abortTile(e),this.unloadTile(e))))},clearTiles:function(){for(var t in this._tiles)this.removeTile(t);this._cache.reset()},tilesIn:function(t){for(var e={},r=this.getIds(),n=1/0,i=1/0,a=-1/0,s=-1/0,c=t[0].zoom,f=0;f<t.length;f++){var d=t[f];n=Math.min(n,d.column),i=Math.min(i,d.row),a=Math.max(a,d.column),s=Math.max(s,d.row)}for(var p=0;p<r.length;p++){var m=this._tiles[r[p]],v=o.fromID(r[p]),g=[h(v,m.sourceMaxZoom,new l(n,i,c)),h(v,m.sourceMaxZoom,new l(a,s,c))];if(g[0].x<u&&g[0].y<u&&g[1].x>=0&&g[1].y>=0){for(var y=[],b=0;b<t.length;b++)y.push(h(v,m.sourceMaxZoom,t[b]));var x=e[m.coord.id];void 0===x&&(x=e[m.coord.id]={tile:m,coord:v,queryGeometry:[],scale:Math.pow(2,this.transform.zoom-m.coord.z)}),x.queryGeometry.push(y)}}var _=[];for(var w in e)_.push(e[w]);return _},redoPlacement:function(){for(var t=this.getIds(),e=0;e<t.length;e++){this.getTileByID(t[e]).redoPlacement(this)}},getVisibleCoordinates:function(){return this.getRenderableIds().map(o.fromID)}})},{"../data/bucket":301,"../geo/coordinate":310,"../util/evented":406,"../util/lru_cache":410,"../util/util":414,"./source":338,"./tile":340,"./tile_coord":341}],340:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../data/bucket"),a=t("../data/feature_index"),o=t("vector-tile"),s=t("pbf"),l=t("../util/vectortile_to_geojson"),c=t("feature-filter"),u=t("../symbol/collision_tile"),f=t("../symbol/collision_box"),h=t("../symbol/symbol_instances"),d=t("../symbol/symbol_quads");function p(t,e,r){this.coord=t,this.uid=n.uniqueId(),this.uses=0,this.tileSize=e,this.sourceMaxZoom=r,this.buckets={},this.state="loading"}function m(t,e){if(e){for(var r={},a=0;a<t.length;a++){var o=e.getLayer(t[a].layerId);if(o){var s=i.create(n.extend({layer:o,childLayers:t[a].childLayerIds.map(e.getLayer.bind(e)).filter(function(t){return t})},t[a]));r[s.id]=s}}return r}}e.exports=p,p.prototype={loadVectorData:function(t,e){this.state="loaded",t&&(this.collisionBoxArray=new f(t.collisionBoxArray),this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.symbolInstancesArray=new h(t.symbolInstancesArray),this.symbolQuadsArray=new d(t.symbolQuadsArray),this.featureIndex=new a(t.featureIndex,t.rawTileData,this.collisionTile),this.rawTileData=t.rawTileData,this.buckets=m(t.buckets,e))},reloadSymbolData:function(t,e,r){if("unloaded"!==this.state){for(var i in this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.featureIndex.setCollisionTile(this.collisionTile),this.buckets){var a=this.buckets[i];"symbol"===a.type&&(a.destroy(e.gl),delete this.buckets[i])}n.extend(this.buckets,m(t.buckets,r))}},unloadVectorData:function(t){for(var e in this.buckets){this.buckets[e].destroy(t.gl)}this.collisionBoxArray=null,this.symbolQuadsArray=null,this.symbolInstancesArray=null,this.collisionTile=null,this.featureIndex=null,this.rawTileData=null,this.buckets=null,this.state="unloaded"},redoPlacement:function(t){"loaded"===this.state&&"reloading"!==this.state?(this.state="reloading",t.dispatcher.send("redo placement",{uid:this.uid,source:t.id,angle:t.map.transform.angle,pitch:t.map.transform.pitch,showCollisionBoxes:t.map.showCollisionBoxes},function(e,r){this.reloadSymbolData(r,t.map.painter,t.map.style),t.fire("tile.load",{tile:this}),this.state="loaded",this.redoWhenDone&&(this.redoPlacement(t),this.redoWhenDone=!1)}.bind(this),this.workerID)):this.redoWhenDone=!0},getBucket:function(t){return this.buckets&&this.buckets[t.ref||t.id]},querySourceFeatures:function(t,e){if(this.rawTileData){this.vtLayers||(this.vtLayers=new o.VectorTile(new s(new Uint8Array(this.rawTileData))).layers);var r=this.vtLayers._geojsonTileLayer||this.vtLayers[e.sourceLayer];if(r)for(var n=c(e.filter),i={z:this.coord.z,x:this.coord.x,y:this.coord.y},a=0;a<r.length;a++){var u=r.feature(a);if(n(u)){var f=new l(u,this.coord.z,this.coord.x,this.coord.y);f.tile=i,t.push(f)}}}},isRenderable:function(){return"loaded"===this.state||"reloading"===this.state}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/util":414,"../util/vectortile_to_geojson":415,"feature-filter":141,pbf:451,"vector-tile":544}],341:[function(t,e,r){"use strict";var n=t("assert"),i=t("whoots-js"),a=t("../geo/coordinate");function o(t,e,r,i){n(!isNaN(t)&&t>=0&&t%1==0),n(!isNaN(e)&&e>=0&&e%1==0),n(!isNaN(r)&&r>=0&&r%1==0),isNaN(i)&&(i=0),this.z=+t,this.x=+e,this.y=+r,this.w=+i,(i*=2)<0&&(i=-1*i-1);var a=1<<this.z;this.id=32*(a*a*i+a*this.y+this.x)+this.z,this.posMatrix=null}function s(t,e){if(t.row>e.row){var r=t;t=e,e=r}return{x0:t.column,y0:t.row,x1:e.column,y1:e.row,dx:e.column-t.column,dy:e.row-t.row}}function l(t,e,r,n,i){var a=Math.max(r,Math.floor(e.y0)),o=Math.min(n,Math.ceil(e.y1));if(t.x0===e.x0&&t.y0===e.y0?t.x0+e.dy/t.dy*t.dx<e.x1:t.x1-e.dy/t.dy*t.dx<e.x0){var s=t;t=e,e=s}for(var l=t.dx/t.dy,c=e.dx/e.dy,u=t.dx>0,f=e.dx<0,h=a;h<o;h++){var d=l*Math.max(0,Math.min(t.dy,h+u-t.y0))+t.x0,p=c*Math.max(0,Math.min(e.dy,h+f-e.y0))+e.x0;i(Math.floor(p),Math.ceil(d),h)}}function c(t,e,r,n,i,a){var o,c=s(t,e),u=s(e,r),f=s(r,t);c.dy>u.dy&&(o=c,c=u,u=o),c.dy>f.dy&&(o=c,c=f,f=o),u.dy>f.dy&&(o=u,u=f,f=o),c.dy&&l(f,c,n,i,a),u.dy&&l(f,u,n,i,a)}e.exports=o,o.prototype.toString=function(){return this.z+"/"+this.x+"/"+this.y},o.prototype.toCoordinate=function(t){var e=Math.min(this.z,t),r=Math.pow(2,e),n=this.y,i=this.x+r*this.w;return new a(i,n,e)},o.fromID=function(t){var e=t%32,r=1<<e,n=(t-e)/32,i=n%r,a=(n-i)/r%r,s=Math.floor(n/(r*r));return s%2!=0&&(s=-1*s-1),new o(e,i,a,s/=2)},o.prototype.url=function(t,e,r){var n=i.getTileBBox(this.x,this.y,this.z),a=function(t,e,r){for(var n,i="",a=t;a>0;a--)i+=(e&(n=1<<a-1)?1:0)+(r&n?2:0);return i}(this.z,this.x,this.y);return t[(this.x+this.y)%t.length].replace("{prefix}",(this.x%16).toString(16)+(this.y%16).toString(16)).replace("{z}",Math.min(this.z,e||this.z)).replace("{x}",this.x).replace("{y}","tms"===r?Math.pow(2,this.z)-this.y-1:this.y).replace("{quadkey}",a).replace("{bbox-epsg-3857}",n)},o.prototype.parent=function(t){return 0===this.z?null:this.z>t?new o(this.z-1,this.x,this.y,this.w):new o(this.z-1,Math.floor(this.x/2),Math.floor(this.y/2),this.w)},o.prototype.wrapped=function(){return new o(this.z,this.x,this.y,0)},o.prototype.children=function(t){if(this.z>=t)return[new o(this.z+1,this.x,this.y,this.w)];var e=this.z+1,r=2*this.x,n=2*this.y;return[new o(e,r,n,this.w),new o(e,r+1,n,this.w),new o(e,r,n+1,this.w),new o(e,r+1,n+1,this.w)]},o.cover=function(t,e,r){var n=1<<t,i={};function a(t,e,a){var s,l;if(a>=0&&a<=n)for(s=t;s<e;s++)l=new o(r,(s%n+n)%n,a,Math.floor(s/n)),i[l.id]=l}return c(e[0],e[1],e[2],0,n,a),c(e[2],e[3],e[0],0,n,a),Object.keys(i).map(function(t){return i[t]})}},{"../geo/coordinate":310,assert:51,"whoots-js":560}],342:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("./load_tilejson"),o=t("../util/mapbox").normalizeTileURL;function s(t,e,r){if(this.id=t,this.dispatcher=r,i.extend(this,i.pick(e,["url","scheme","tileSize"])),this._options=i.extend({type:"vector"},e),512!==this.tileSize)throw new Error("vector tile sources must have a tileSize of 512");a(e,function(t,e){t?this.fire("error",t):(i.extend(this,e),this.fire("load"))}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{minzoom:0,maxzoom:22,scheme:"xyz",tileSize:512,reparseOverscaled:!0,isTileClipped:!0,onAdd:function(t){this.map=t},serialize:function(){return i.extend({},this._options)},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={url:o(t.coord.url(this.tiles,this.maxzoom,this.scheme),this.url),uid:t.uid,coord:t.coord,zoom:t.coord.z,tileSize:this.tileSize*r,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};function i(r,n){if(!t.aborted){if(r)return e(r);t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null),t.reloadCallback&&(this.loadTile(t,t.reloadCallback),t.reloadCallback=null)}}t.workerID?"loading"===t.state?t.reloadCallback=e:(n.rawTileData=t.rawTileData,this.dispatcher.send("reload tile",n,i.bind(this),t.workerID)):t.workerID=this.dispatcher.send("load tile",n,i.bind(this))},abortTile:function(t){this.dispatcher.send("abort tile",{uid:t.uid,source:this.id},null,t.workerID)},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},null,t.workerID)}})},{"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],343:[function(t,e,r){"use strict";var n=t("../util/ajax"),i=t("vector-tile"),a=t("pbf"),o=t("./worker_tile");function s(t,e,r){this.actor=t,this.styleLayers=e,r&&(this.loadVectorData=r),this.loading={},this.loaded={}}e.exports=s,s.prototype={loadTile:function(t,e){var r=t.source,n=t.uid;this.loading[r]||(this.loading[r]={});var i=this.loading[r][n]=new o(t);i.abort=this.loadVectorData(t,function(t,a){if(delete this.loading[r][n],t)return e(t);if(!a)return e(null,null);i.data=a.tile,i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,a.rawTileData,e),this.loaded[r]=this.loaded[r]||{},this.loaded[r][n]=i}.bind(this))},reloadTile:function(t,e){var r=this.loaded[t.source],n=t.uid;if(r&&r[n]){var i=r[n];i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,t.rawTileData,e)}},abortTile:function(t){var e=this.loading[t.source],r=t.uid;e&&e[r]&&e[r].abort&&(e[r].abort(),delete e[r])},removeTile:function(t){var e=this.loaded[t.source],r=t.uid;e&&e[r]&&delete e[r]},loadVectorData:function(t,e){var r=n.getArrayBuffer(t.url,function(t,r){if(t)return e(t);var n=new i.VectorTile(new a(new Uint8Array(r)));e(t,{tile:n,rawTileData:r})}.bind(this));return function(){r.abort()}},redoPlacement:function(t,e){var r=this.loaded[t.source],n=this.loading[t.source],i=t.uid;if(r&&r[i]){var a=r[i].redoPlacement(t.angle,t.pitch,t.showCollisionBoxes);a.result&&e(null,a.result,a.transferables)}else n&&n[i]&&(n[i].angle=t.angle)}}},{"../util/ajax":397,"./worker_tile":346,pbf:451,"vector-tile":544}],344:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e){this.id=t,this.urls=e.urls,this.coordinates=e.coordinates,l.getVideo(e.urls,function(t,r){if(t)return this.fire("error",{error:t});var n;this.video=r,this.video.loop=!0,this.video.addEventListener("playing",function(){n=this.map.style.animationLoop.set(1/0),this.map._rerender()}.bind(this)),this.video.addEventListener("pause",function(){this.map.style.animationLoop.cancel(n)}.bind(this)),this.map&&(this.video.play(),this.setCoordinates(e.coordinates)),this.fire("load")}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,roundZoom:!0,getVideo:function(){return this.video},onAdd:function(t){this.map||(this.map=t,this.video&&(this.video.play(),this.setCoordinates(this.coordinates)))},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(!(this.video.readyState<2)&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.video)):(this._prepared=!0,this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.video)),this._currentTime=this.video.currentTime}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"video",urls:this.urls,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],345:[function(t,e,r){"use strict";var n=t("../util/actor"),i=t("../style/style_layer"),a=t("../util/util"),o=t("./vector_tile_worker_source"),s=t("./geojson_worker_source");function l(t){this.self=t,this.actor=new n(t,this);var e={getLayers:function(){return this.layers}.bind(this),getLayerFamilies:function(){return this.layerFamilies}.bind(this)};this.workerSources={vector:new o(this.actor,e),geojson:new s(this.actor,e)},this.self.registerWorkerSource=function(t,r){if(this.workerSources[t])throw new Error('Worker source with name "'+t+'" already registered.');this.workerSources[t]=new r(this.actor,e)}.bind(this)}function c(t){var e={};for(var r in t){var n=t[r],i=n.ref||n.id,a=t[i];a.layout&&"none"===a.layout.visibility||(e[i]=e[i]||[],r===i?e[i].unshift(n):e[i].push(n))}return e}e.exports=function(t){return new l(t)},a.extend(l.prototype,{"set layers":function(t){this.layers={};for(var e=this,r=[],n=0;n<t.length;n++){var a=t[n];"fill"!==a.type&&"line"!==a.type&&"circle"!==a.type&&"symbol"!==a.type||(a.ref?r.push(n):s(a))}for(var o=0;o<r.length;o++)s(t[r[o]]);function s(t){var r=i.create(t,t.ref&&e.layers[t.ref]);r.updatePaintTransitions({},{transition:!1}),e.layers[r.id]=r}this.layerFamilies=c(this.layers)},"update layers":function(t){var e,r,n=this;for(e in t)(r=t[e]).ref&&a(r);for(e in t)(r=t[e]).ref||a(r);function a(t){var e=n.layers[t.ref];n.layers[t.id]?n.layers[t.id].set(t,e):n.layers[t.id]=i.create(t,e),n.layers[t.id].updatePaintTransitions({},{transition:!1})}this.layerFamilies=c(this.layers)},"load tile":function(t,e){var r=t.type||"vector";this.workerSources[r].loadTile(t,e)},"reload tile":function(t,e){var r=t.type||"vector";this.workerSources[r].reloadTile(t,e)},"abort tile":function(t){var e=t.type||"vector";this.workerSources[e].abortTile(t)},"remove tile":function(t){var e=t.type||"vector";this.workerSources[e].removeTile(t)},"redo placement":function(t,e){var r=t.type||"vector";this.workerSources[r].redoPlacement(t,e)},"load worker source":function(t,e){try{this.self.importScripts(t.url),e()}catch(t){e(t)}}})},{"../style/style_layer":353,"../util/actor":396,"../util/util":414,"./geojson_worker_source":331,"./vector_tile_worker_source":343}],346:[function(t,e,r){"use strict";var n=t("../data/feature_index"),i=t("../symbol/collision_tile"),a=t("../data/bucket"),o=t("../symbol/collision_box"),s=t("../util/dictionary_coder"),l=t("../util/util"),c=t("../symbol/symbol_instances"),u=t("../symbol/symbol_quads");function f(t){this.coord=t.coord,this.uid=t.uid,this.zoom=t.zoom,this.tileSize=t.tileSize,this.source=t.source,this.overscaling=t.overscaling,this.angle=t.angle,this.pitch=t.pitch,this.showCollisionBoxes=t.showCollisionBoxes}function h(t){return!t.isEmpty()}function d(t){return t.serialize()}function p(t){var e=[];for(var r in t)t[r].getTransferables(e);return e}function m(t){return t.id}e.exports=f,f.prototype.parse=function(t,e,r,f,v){this.status="parsing",this.data=t,this.collisionBoxArray=new o,this.symbolInstancesArray=new c,this.symbolQuadsArray=new u;var g,y,b,x,_=new i(this.angle,this.pitch,this.collisionBoxArray),w=new n(this.coord,this.overscaling,_,t.layers),M=new s(t.layers?Object.keys(t.layers).sort():["_geojsonTileLayer"]),k=this,A={},T={},E=0;for(var S in e)(y=e[S][0]).source===this.source&&(y.ref||y.minzoom&&this.zoom<y.minzoom||y.maxzoom&&this.zoom>=y.maxzoom||y.layout&&"none"===y.layout.visibility||t.layers&&!t.layers[y.sourceLayer]||((x=a.create({layer:y,index:E++,childLayers:e[S],zoom:this.zoom,overscaling:this.overscaling,showCollisionBoxes:this.showCollisionBoxes,collisionBoxArray:this.collisionBoxArray,symbolQuadsArray:this.symbolQuadsArray,symbolInstancesArray:this.symbolInstancesArray,sourceLayerIndex:M.encode(y.sourceLayer||"_geojsonTileLayer")})).createFilter(),A[y.id]=x,t.layers&&(T[b=y.sourceLayer]=T[b]||{},T[b][y.id]=x)));if(t.layers)for(b in T)1===y.version&&l.warnOnce('Vector tile source "'+this.source+'" layer "'+b+'" does not use vector tile spec v2 and therefore may have some rendering errors.'),(y=t.layers[b])&&L(y,T[b]);else L(t,A);function L(t,e){for(var r=0;r<t.length;r++){var n=t.feature(r);for(var i in n.index=r,e)e[i].filter(n)&&e[i].features.push(n)}}var C=[],P=this.symbolBuckets=[],z=[];for(var O in w.bucketLayerIDs={},A)0!==(x=A[O]).features.length&&(w.bucketLayerIDs[x.index]=x.childLayers.map(m),C.push(x),"symbol"===x.type?P.push(x):z.push(x));var D={},I={},R=0;if(P.length>0){for(g=P.length-1;g>=0;g--)P[g].updateIcons(D),P[g].updateFont(I);for(var N in I)I[N]=Object.keys(I[N]).map(Number);D=Object.keys(D),r.send("get glyphs",{uid:this.uid,stacks:I},function(t,e){I=e,F(t)}),D.length?r.send("get icons",{icons:D},function(t,e){D=e,F(t)}):F()}for(g=z.length-1;g>=0;g--)j(this,z[g]);if(0===P.length)return B();function F(t){if(t)return v(t);if(2===++R){for(var e=P.length-1;e>=0;e--)j(k,P[e]);B()}}function j(t,e){if(e.populateArrays(_,I,D),"symbol"!==e.type)for(var r=0;r<e.features.length;r++){var n=e.features[r];w.insert(n,n.index,e.sourceLayerIndex,e.index)}e.features=null}function B(){k.status="done",k.redoPlacementAfterDone&&(k.redoPlacement(k.angle,k.pitch,null),k.redoPlacementAfterDone=!1);var t=w.serialize(),e=_.serialize(),r=k.collisionBoxArray.serialize(),n=k.symbolInstancesArray.serialize(),i=k.symbolQuadsArray.serialize(),a=[f].concat(t.transferables).concat(e.transferables),o=C.filter(h);v(null,{buckets:o.map(d),featureIndex:t.data,collisionTile:e.data,collisionBoxArray:r,symbolInstancesArray:n,symbolQuadsArray:i,rawTileData:f},p(o).concat(a))}},f.prototype.redoPlacement=function(t,e,r){if("done"!==this.status)return this.redoPlacementAfterDone=!0,this.angle=t,{};for(var n=new i(t,e,this.collisionBoxArray),a=this.symbolBuckets,o=a.length-1;o>=0;o--)a[o].placeFeatures(n,r);var s=n.serialize(),l=a.filter(h);return{result:{buckets:l.map(d),collisionTile:s.data},transferables:p(l).concat(s.transferables)}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/dictionary_coder":404,"../util/util":414}],347:[function(t,e,r){"use strict";function n(){this.n=0,this.times=[]}e.exports=n,n.prototype.stopped=function(){return this.times=this.times.filter(function(t){return t.time>=(new Date).getTime()}),!this.times.length},n.prototype.set=function(t){return this.times.push({id:this.n,time:t+(new Date).getTime()}),this.n++},n.prototype.cancel=function(t){this.times=this.times.filter(function(e){return e.id!==t})}},{}],348:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSpriteURL;function s(t){this.base=t,this.retina=a.devicePixelRatio>1;var e=this.retina?"@2x":"";i.getJSON(o(t,e,".json"),function(t,e){t?this.fire("error",{error:t}):(this.data=e,this.img&&this.fire("load"))}.bind(this)),i.getImage(o(t,e,".png"),function(t,e){if(t)this.fire("error",{error:t});else{for(var r=e.getData(),n=e.data=new Uint8Array(r.length),i=0;i<r.length;i+=4){var a=r[i+3]/255;n[i+0]=r[i+0]*a,n[i+1]=r[i+1]*a,n[i+2]=r[i+2]*a,n[i+3]=r[i+3]}this.img=e,this.data&&this.fire("load")}}.bind(this))}function l(){}e.exports=s,s.prototype=Object.create(n),s.prototype.toJSON=function(){return this.base},s.prototype.loaded=function(){return!(!this.data||!this.img)},s.prototype.resize=function(){if(a.devicePixelRatio>1!==this.retina){var t=new s(this.base);t.on("load",function(){this.img=t.img,this.data=t.data,this.retina=t.retina}.bind(this))}},l.prototype={x:0,y:0,width:0,height:0,pixelRatio:1,sdf:!1},s.prototype.getSpritePosition=function(t){if(!this.loaded())return new l;var e=this.data&&this.data[t];return e&&this.img?e:new l}},{"../util/ajax":397,"../util/browser":398,"../util/evented":406,"../util/mapbox":411}],349:[function(t,e,r){"use strict";var n=t("csscolorparser").parseCSSColor,i=t("../util/util"),a=t("./style_function"),o={};e.exports=function t(e){if(a.isFunctionDefinition(e))return i.extend({},e,{stops:e.stops.map(function(e){return[e[0],t(e[1])]})});if("string"==typeof e){if(!o[e]){var r=n(e);if(!r)throw new Error("Invalid color "+e);o[e]=[r[0]/255*r[3],r[1]/255*r[3],r[2]/255*r[3],r[3]]}return o[e]}throw new Error("Invalid color "+e)}},{"../util/util":414,"./style_function":352,csscolorparser:114}],350:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("./style_layer"),a=t("./image_sprite"),o=t("../symbol/glyph_source"),s=t("../symbol/sprite_atlas"),l=t("../render/line_atlas"),c=t("../util/util"),u=t("../util/ajax"),f=t("../util/mapbox").normalizeStyleURL,h=t("../util/browser"),d=t("../util/dispatcher"),p=t("./animation_loop"),m=t("./validate_style"),v=t("../source/source"),g=t("../source/query_features"),y=t("../source/source_cache"),b=t("./style_spec"),x=t("./style_function");function _(t,e,r){this.animationLoop=e||new p,this.dispatcher=new d(r||1,this),this.spriteAtlas=new s(1024,1024),this.lineAtlas=new 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t;this._groups=[];for(var e=0;e<this._order.length;++e){var r=this._layers[this._order[e]];t&&r.source===t.source||((t=[]).source=r.source,this._groups.push(t)),t.push(r)}},_updateWorkerLayers:function(t){this.dispatcher.broadcast(t?"update layers":"set layers",this._serializeLayers(t))},_serializeLayers:function(t){t=t||this._order;for(var e=[],r={includeRefProperties:!0},n=0;n<t.length;n++)e.push(this._layers[t[n]].serialize(r));return e},_applyClasses:function(t,e){if(this._loaded){t=t||[],e=e||{transition:!0};var r=this.stylesheet.transition||{},n=this._updates.allPaintProps?this._layers:this._updates.paintProps;for(var i in n){var a=this._layers[i],o=this._updates.paintProps[i];if(this._updates.allPaintProps||o.all)a.updatePaintTransitions(t,e,r,this.animationLoop);else for(var s in o)this._layers[i].updatePaintTransition(s,t,e,r,this.animationLoop)}}},_recalculate:function(t){for(var e in this.sources)this.sources[e].used=!1;for(var r in this._updateZoomHistory(t),this.rasterFadeDuration=300,this._layers){var n=this._layers[r];n.recalculate(t,this.zoomHistory),!n.isHidden(t)&&n.source&&(this.sources[n.source].used=!0)}Math.floor(this.z)!==Math.floor(t)&&this.animationLoop.set(300),this.z=t,this.fire("zoom")},_updateZoomHistory:function(t){var e=this.zoomHistory;void 0===e.lastIntegerZoom&&(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=0,e.lastZoom=t),Math.floor(e.lastZoom)<Math.floor(t)?(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=Date.now()):Math.floor(e.lastZoom)>Math.floor(t)&&(e.lastIntegerZoom=Math.floor(t+1),e.lastIntegerZoomTime=Date.now()),e.lastZoom=t},_checkLoaded:function(){if(!this._loaded)throw new Error("Style is not done loading")},update:function(t,e){if(!this._updates.changed)return this;if(this._updates.allLayers)this._groupLayers(),this._updateWorkerLayers();else{var r=Object.keys(this._updates.layers);r.length&&this._updateWorkerLayers(r)}var n,i=Object.keys(this._updates.sources);for(n=0;n<i.length;n++)this._reloadSource(i[n]);for(n=0;n<this._updates.events.length;n++){var a=this._updates.events[n];this.fire(a[0],a[1])}return this._applyClasses(t,e),this._updates.changed&&this.fire("change"),this._resetUpdates(),this},_resetUpdates:function(){this._updates={events:[],layers:{},sources:{},paintProps:{}}},addSource:function(t,e){if(this._checkLoaded(),void 0!==this.sources[t])throw new Error("There is already a source with this ID");if(!e.type)throw new Error("The type property must be defined, but the only the following properties were given: "+Object.keys(e)+".");return["vector","raster","geojson","video","image"].indexOf(e.type)>=0&&this._handleErrors(m.source,"sources."+t,e)?this:(e=new y(t,e,this.dispatcher),this.sources[t]=e,e.style=this,e.on("load",this._forwardSourceEvent).on("error",this._forwardSourceEvent).on("change",this._forwardSourceEvent).on("tile.add",this._forwardTileEvent).on("tile.load",this._forwardTileEvent).on("tile.error",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.add",{source:e}]),this._updates.changed=!0,this)},removeSource:function(t){if(this._checkLoaded(),void 0===this.sources[t])throw new Error("There is no source with this ID");var e=this.sources[t];return delete this.sources[t],delete this._updates.sources[t],e.off("load",this._forwardSourceEvent).off("error",this._forwardSourceEvent).off("change",this._forwardSourceEvent).off("tile.add",this._forwardTileEvent).off("tile.load",this._forwardTileEvent).off("tile.error",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.remove",{source:e}]),this._updates.changed=!0,this},getSource:function(t){return this.sources[t]&&this.sources[t].getSource()},addLayer:function(t,e){if(this._checkLoaded(),!(t instanceof i)){if(this._handleErrors(m.layer,"layers."+t.id,t,!1,{arrayIndex:-1}))return this;var r=t.ref&&this.getLayer(t.ref);t=i.create(t,r)}return this._validateLayer(t),t.on("error",this._forwardLayerEvent),this._layers[t.id]=t,this._order.splice(e?this._order.indexOf(e):1/0,0,t.id),this._updates.allLayers=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.events.push(["layer.add",{layer:t}]),this.updateClasses(t.id)},removeLayer:function(t){this._checkLoaded();var e=this._layers[t];if(void 0===e)throw new Error("There is no layer with this ID");for(var r in this._layers)this._layers[r].ref===t&&this.removeLayer(r);return e.off("error",this._forwardLayerEvent),delete this._layers[t],delete this._updates.layers[t],delete this._updates.paintProps[t],this._order.splice(this._order.indexOf(t),1),this._updates.allLayers=!0,this._updates.events.push(["layer.remove",{layer:e}]),this._updates.changed=!0,this},getLayer:function(t){return this._layers[t]},getReferentLayer:function(t){var e=this.getLayer(t);return e.ref&&(e=this.getLayer(e.ref)),e},setLayerZoomRange:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return n.minzoom===e&&n.maxzoom===r?this:(null!=e&&(n.minzoom=e),null!=r&&(n.maxzoom=r),this._updateLayer(n))},setFilter:function(t,e){this._checkLoaded();var r=this.getReferentLayer(t);return null!==e&&this._handleErrors(m.filter,"layers."+r.id+".filter",e)?this:c.deepEqual(r.filter,e)?this:(r.filter=c.clone(e),this._updateLayer(r))},getFilter:function(t){return this.getReferentLayer(t).filter},setLayoutProperty:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return c.deepEqual(n.getLayoutProperty(e),r)?this:(n.setLayoutProperty(e,r),this._updateLayer(n))},getLayoutProperty:function(t,e){return this.getReferentLayer(t).getLayoutProperty(e)},setPaintProperty:function(t,e,r,n){this._checkLoaded();var i=this.getLayer(t);if(c.deepEqual(i.getPaintProperty(e,n),r))return this;var a=i.isPaintValueFeatureConstant(e);return i.setPaintProperty(e,r,n),!(r&&x.isFunctionDefinition(r)&&"$zoom"!==r.property&&void 0!==r.property)&&a||(this._updates.layers[t]=!0,i.source&&(this._updates.sources[i.source]=!0)),this.updateClasses(t,e)},getPaintProperty:function(t,e,r){return this.getLayer(t).getPaintProperty(e,r)},updateClasses:function(t,e){if(this._updates.changed=!0,t){var r=this._updates.paintProps;r[t]||(r[t]={}),r[t][e||"all"]=!0}else this._updates.allPaintProps=!0;return this},serialize:function(){return c.filterObject({version:this.stylesheet.version,name:this.stylesheet.name,metadata:this.stylesheet.metadata,center:this.stylesheet.center,zoom:this.stylesheet.zoom,bearing:this.stylesheet.bearing,pitch:this.stylesheet.pitch,sprite:this.stylesheet.sprite,glyphs:this.stylesheet.glyphs,transition:this.stylesheet.transition,sources:c.mapObject(this.sources,function(t){return t.serialize()}),layers:this._order.map(function(t){return this._layers[t].serialize()},this)},function(t){return void 0!==t})},_updateLayer:function(t){return this._updates.layers[t.id]=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.changed=!0,this},_flattenRenderedFeatures:function(t){for(var e=[],r=this._order.length-1;r>=0;r--)for(var n=this._order[r],i=0;i<t.length;i++){var a=t[i][n];if(a)for(var o=0;o<a.length;o++)e.push(a[o])}return e},queryRenderedFeatures:function(t,e,r,n){e&&e.filter&&this._handleErrors(m.filter,"queryRenderedFeatures.filter",e.filter,!0);var i={};if(e&&e.layers)for(var a=0;a<e.layers.length;a++){var o=e.layers[a];i[this._layers[o].source]=!0}var s=[];for(var l in this.sources)if(!e.layers||i[l]){var c=this.sources[l],u=g.rendered(c,this._layers,t,e,r,n);s.push(u)}return this._flattenRenderedFeatures(s)},querySourceFeatures:function(t,e){e&&e.filter&&this._handleErrors(m.filter,"querySourceFeatures.filter",e.filter,!0);var r=this.sources[t];return r?g.source(r,e):[]},addSourceType:function(t,e,r){return v.getType(t)?r(new Error('A source type called "'+t+'" already 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r=this.sprite;r.loaded()?e(null,{sprite:r.data,retina:r.retina}):r.on("load",function(){e(null,{sprite:r.data,retina:r.retina})})},"get icons":function(t,e){var r=this.sprite,n=this.spriteAtlas;r.loaded()?(n.setSprite(r),n.addIcons(t.icons,e)):r.on("load",function(){n.setSprite(r),n.addIcons(t.icons,e)})},"get glyphs":function(t,e){var r=t.stacks,n=Object.keys(r).length,i={};for(var a in r)this.glyphSource.getSimpleGlyphs(a,r[a],t.uid,o);function o(t,r,a){t&&console.error(t),i[a]=r,0===--n&&e(null,i)}}})},{"../render/line_atlas":326,"../source/query_features":336,"../source/source":338,"../source/source_cache":339,"../symbol/glyph_source":371,"../symbol/sprite_atlas":376,"../util/ajax":397,"../util/browser":398,"../util/dispatcher":405,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./animation_loop":347,"./image_sprite":348,"./style_function":352,"./style_layer":353,"./style_spec":360,"./validate_style":362}],351:[function(t,e,r){"use strict";var n=t("./style_function"),i=t("./parse_color"),a=t("../util/util");e.exports=function(t,e){this.value=a.clone(e),this.isFunction=n.isFunctionDefinition(e),this.json=JSON.stringify(this.value);var r="color"===t.type&&this.value?i(this.value):e;this.calculate=n[t.function||"piecewise-constant"](r),this.isFeatureConstant=this.calculate.isFeatureConstant,this.isZoomConstant=this.calculate.isZoomConstant,"piecewise-constant"===t.function&&t.transition&&(this.calculate=(o=this.calculate,function(t,e){var r,n,i,a=t.zoom,s=t.zoomHistory,l=t.duration,c=a%1,u=Math.min((Date.now()-s.lastIntegerZoomTime)/l,1),f=1;return a>s.lastIntegerZoom?(r=c+(1-c)*u,f*=2,n=o({zoom:a-1},e),i=o({zoom:a},e)):(r=1-(1-u)*c,i=o({zoom:a},e),n=o({zoom:a+1},e),f/=2),void 0===n||void 0===i?void 0:{from:n,fromScale:f,to:i,toScale:1,t:r}}));var o;if(!this.isFeatureConstant&&!this.isZoomConstant){this.stopZoomLevels=[];for(var s=[],l=this.value.stops,c=0;c<this.value.stops.length;c++){var u=l[c][0].zoom;this.stopZoomLevels.indexOf(u)<0&&(this.stopZoomLevels.push(u),s.push([u,s.length]))}this.calculateInterpolationT=n.interpolated({stops:s,base:e.base})}}},{"../util/util":414,"./parse_color":349,"./style_function":352}],352:[function(t,e,r){"use strict";var n=t("mapbox-gl-function");r.interpolated=function(t){var e=n.interpolated(t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r["piecewise-constant"]=function(t){var e=n["piecewise-constant"](t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r.isFunctionDefinition=n.isFunctionDefinition},{"mapbox-gl-function":274}],353:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./style_transition"),a=t("./style_declaration"),o=t("./style_spec"),s=t("./validate_style"),l=t("./parse_color"),c=t("../util/evented");e.exports=u;function u(t,e){this.set(t,e)}function 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t[i])this.setPaintProperty(r,t[i][r],s)}}if(this.ref)this._layoutDeclarations=e._layoutDeclarations;else for(n in t.layout)this.setLayoutProperty(n,t.layout[n]);for(r in this._paintSpecifications)this.paint[r]=this.getPaintValue(r);for(n in this._layoutSpecifications)this._updateLayoutValue(n)},setLayoutProperty:function(t,e){if(null==e)delete this._layoutDeclarations[t];else{var r="layers."+this.id+".layout."+t;if(this._handleErrors(s.layoutProperty,r,t,e))return;this._layoutDeclarations[t]=new a(this._layoutSpecifications[t],e)}this._updateLayoutValue(t)},getLayoutProperty:function(t){return this._layoutDeclarations[t]&&this._layoutDeclarations[t].value},getLayoutValue:function(t,e,r){var n=this._layoutSpecifications[t],i=this._layoutDeclarations[t];return i?i.calculate(e,r):n.default},setPaintProperty:function(t,e,r){var i="layers."+this.id+(r?'["paint.'+r+'"].':".paint.")+t;if(n.endsWith(t,"-transition"))if(this._paintTransitionOptions[r||""]||(this._paintTransitionOptions[r||""]={}),null===e||void 0===e)delete this._paintTransitionOptions[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintTransitionOptions[r||""][t]=e}else if(this._paintDeclarations[r||""]||(this._paintDeclarations[r||""]={}),null===e||void 0===e)delete this._paintDeclarations[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintDeclarations[r||""][t]=new a(this._paintSpecifications[t],e)}},getPaintProperty:function(t,e){return e=e||"",n.endsWith(t,"-transition")?this._paintTransitionOptions[e]&&this._paintTransitionOptions[e][t]:this._paintDeclarations[e]&&this._paintDeclarations[e][t]&&this._paintDeclarations[e][t].value},getPaintValue:function(t,e,r){var n=this._paintSpecifications[t],i=this._paintTransitions[t];return i?i.calculate(e,r):"color"===n.type&&n.default?l(n.default):n.default},getPaintValueStopZoomLevels:function(t){var e=this._paintTransitions[t];return e?e.declaration.stopZoomLevels:[]},getPaintInterpolationT:function(t,e){return this._paintTransitions[t].declaration.calculateInterpolationT({zoom:e})},isPaintValueFeatureConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isFeatureConstant},isLayoutValueFeatureConstant:function(t){var e=this._layoutDeclarations[t];return!e||e.isFeatureConstant},isPaintValueZoomConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isZoomConstant},isHidden:function(t){return!!(this.minzoom&&t<this.minzoom)||(!!(this.maxzoom&&t>=this.maxzoom)||("none"===this.layout.visibility||0===this.paint[this.type+"-opacity"]))},updatePaintTransitions:function(t,e,r,i){for(var a,o=n.extend({},this._paintDeclarations[""]),s=0;s<t.length;s++)n.extend(o,this._paintDeclarations[t[s]]);for(a in o)this._applyPaintDeclaration(a,o[a],e,r,i);for(a in this._paintTransitions)a in o||this._applyPaintDeclaration(a,null,e,r,i)},updatePaintTransition:function(t,e,r,n,i){for(var a=this._paintDeclarations[""][t],o=0;o<e.length;o++){var s=this._paintDeclarations[e[o]];s&&s[t]&&(a=s[t])}this._applyPaintDeclaration(t,a,r,n,i)},recalculate:function(t,e){for(var r in this._paintTransitions)this.paint[r]=this.getPaintValue(r,{zoom:t,zoomHistory:e});for(var n in this._layoutFunctions)this.layout[n]=this.getLayoutValue(n,{zoom:t,zoomHistory:e})},serialize:function(t){var e={id:this.id,ref:this.ref,metadata:this.metadata,minzoom:this.minzoom,maxzoom:this.maxzoom};for(var r in this._paintDeclarations){e[""===r?"paint":"paint."+r]=n.mapObject(this._paintDeclarations[r],f)}return(!this.ref||t&&t.includeRefProperties)&&n.extend(e,{type:this.type,source:this.source,"source-layer":this.sourceLayer,filter:this.filter,layout:n.mapObject(this._layoutDeclarations,f)}),n.filterObject(e,function(t,e){return void 0!==t&&!("layout"===e&&!Object.keys(t).length)})},_applyPaintDeclaration:function(t,e,r,o,s){var l=r.transition?this._paintTransitions[t]:void 0,c=this._paintSpecifications[t];if(null!==e&&void 0!==e||(e=new a(c,c.default)),!l||l.declaration.json!==e.json){var u=n.extend({duration:300,delay:0},o,this.getPaintProperty(t+"-transition")),f=this._paintTransitions[t]=new i(c,e,l,u);f.instant()||(f.loopID=s.set(f.endTime-Date.now())),l&&s.cancel(l.loopID)}},_updateLayoutValue:function(t){var e=this._layoutDeclarations[t];e&&e.isFunction?this._layoutFunctions[t]=!0:(delete this._layoutFunctions[t],this.layout[t]=this.getLayoutValue(t))},_handleErrors:function(t,e,r,n){return s.emitErrors(this,t.call(s,{key:e,layerType:this.type,objectKey:r,value:n,styleSpec:o,style:{glyphs:!0,sprite:!0}}))}})},{"../util/evented":406,"../util/util":414,"./parse_color":349,"./style_declaration":351,"./style_layer/background_style_layer":354,"./style_layer/circle_style_layer":355,"./style_layer/fill_style_layer":356,"./style_layer/line_style_layer":357,"./style_layer/raster_style_layer":358,"./style_layer/symbol_style_layer":359,"./style_spec":360,"./style_transition":361,"./validate_style":362}],354:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],355:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],356:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValue.call(this,"fill-color",e,r):i.prototype.getPaintValue.call(this,t,e,r)},getPaintValueStopZoomLevels:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValueStopZoomLevels.call(this,"fill-color"):i.prototype.getPaintValueStopZoomLevels.call(this,arguments)},getPaintInterpolationT:function(t,e){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintInterpolationT.call(this,"fill-color",e):i.prototype.getPaintInterpolationT.call(this,t,e)},isPaintValueFeatureConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueFeatureConstant.call(this,"fill-color"):i.prototype.isPaintValueFeatureConstant.call(this,t)},isPaintValueZoomConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueZoomConstant.call(this,"fill-color"):i.prototype.isPaintValueZoomConstant.call(this,t)}}),e.exports=a},{"../../util/util":414,"../style_layer":353}],357:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){var n=i.prototype.getPaintValue.apply(this,arguments);if(n&&"line-dasharray"===t){var a=Math.floor(e.zoom);this._flooredZoom!==a&&(this._flooredZoom=a,this._flooredLineWidth=this.getPaintValue("line-width",e,r)),n.fromScale*=this._flooredLineWidth,n.toScale*=this._flooredLineWidth}return n}})},{"../../util/util":414,"../style_layer":353}],358:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],359:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{isHidden:function(){if(i.prototype.isHidden.apply(this,arguments))return!0;var t=0===this.paint["text-opacity"]||!this.layout["text-field"],e=0===this.paint["icon-opacity"]||!this.layout["icon-image"];return!(!t||!e)},getLayoutValue:function(t,e,r){return("text-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("text-rotation-alignment"))&&("icon-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("icon-rotation-alignment"))?"text-pitch-alignment"!==t||this.getLayoutProperty("text-pitch-alignment")?i.prototype.getLayoutValue.apply(this,arguments):this.getLayoutValue("text-rotation-alignment"):"map"}})},{"../../util/util":414,"../style_layer":353}],360:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/reference/latest.min")},{"mapbox-gl-style-spec/reference/latest.min":297}],361:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate");function a(t,e,r,a){this.declaration=e,this.startTime=this.endTime=(new Date).getTime(),"piecewise-constant"===t.function&&t.transition?this.interp=o:this.interp=i[t.type],this.oldTransition=r,this.duration=a.duration||0,this.delay=a.delay||0,this.instant()||(this.endTime=this.startTime+this.duration+this.delay,this.ease=n.easeCubicInOut),r&&r.endTime<=this.startTime&&delete r.oldTransition}function o(t,e,r){return void 0===(t&&t.to)||void 0===(e&&e.to)?void 0:{from:t.to,fromScale:t.toScale,to:e.to,toScale:e.toScale,t:r}}e.exports=a,a.prototype.instant=function(){return!this.oldTransition||!this.interp||0===this.duration&&0===this.delay},a.prototype.calculate=function(t,e){var r=this.declaration.calculate(n.extend({},t,{duration:this.duration}),e);if(this.instant())return r;var i=t.time||Date.now();if(i<this.endTime){var a=this.oldTransition.calculate(n.extend({},t,{time:this.startTime}),e),o=this.ease((i-this.startTime-this.delay)/this.duration);r=this.interp(a,r,o)}return r}},{"../util/interpolate":408,"../util/util":414}],362:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/lib/validate_style.min"),e.exports.emitErrors=function(t,e){if(e&&e.length){for(var r=0;r<e.length;r++)t.fire("error",{error:new Error(e[r].message)});return!0}return!1},e.exports.throwErrors=function(t,e){if(e)for(var r=0;r<e.length;r++)throw new Error(e[r].message)}},{"mapbox-gl-style-spec/lib/validate_style.min":296}],363:[function(t,e,r){"use strict";var n=t("point-geometry");function i(t,e,r,n){this.x=t,this.y=e,this.angle=r,void 0!==n&&(this.segment=n)}e.exports=i,i.prototype=Object.create(n.prototype),i.prototype.clone=function(){return new i(this.x,this.y,this.angle,this.segment)}},{"point-geometry":458}],364:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){if(void 0===e.segment)return!0;var a=e,o=e.segment+1,s=0;for(;s>-r/2;){if(--o<0)return!1;s-=t[o].dist(a),a=t[o]}s+=t[o].dist(t[o+1]),o++;var l=[],c=0;for(;s<r/2;){var u=t[o-1],f=t[o],h=t[o+1];if(!h)return!1;var d=u.angleTo(f)-f.angleTo(h);for(d=Math.abs((d+3*Math.PI)%(2*Math.PI)-Math.PI),l.push({distance:s,angleDelta:d}),c+=d;s-l[0].distance>n;)c-=l.shift().angleDelta;if(c>i)return!1;o++,s+=f.dist(h)}return!0}},{}],365:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports=function(t,e,r,i,a){for(var o=[],s=0;s<t.length;s++)for(var l,c=t[s],u=0;u<c.length-1;u++){var f=c[u],h=c[u+1];f.x<e&&h.x<e||(f.x<e?f=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round():h.x<e&&(h=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round()),f.y<r&&h.y<r||(f.y<r?f=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round():h.y<r&&(h=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round()),f.x>=i&&h.x>=i||(f.x>=i?f=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round():h.x>=i&&(h=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round()),f.y>=a&&h.y>=a||(f.y>=a?f=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round():h.y>=a&&(h=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round()),l&&f.equals(l[l.length-1])||(l=[f],o.push(l)),l.push(h)))))}return o}},{"point-geometry":458}],366:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int16",name:"x1"},{type:"Int16",name:"y1"},{type:"Int16",name:"x2"},{type:"Int16",name:"y2"},{type:"Float32",name:"maxScale"},{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"},{type:"Int16",name:"bbox0"},{type:"Int16",name:"bbox1"},{type:"Int16",name:"bbox2"},{type:"Int16",name:"bbox3"},{type:"Float32",name:"placementScale"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],367:[function(t,e,r){"use strict";function n(t,e,r,n,i,a,o,s,l,c,u){var f=o.top*s-l,h=o.bottom*s+l,d=o.left*s-l,p=o.right*s+l;if(this.boxStartIndex=t.length,c){var m=h-f,v=p-d;if(m>0)if(m=Math.max(10*s,m),u){var g=e[r.segment+1].sub(e[r.segment])._unit()._mult(v),y=[r.sub(g),r.add(g)];this._addLineCollisionBoxes(t,y,r,0,v,m,n,i,a)}else this._addLineCollisionBoxes(t,e,r,r.segment,v,m,n,i,a)}else t.emplaceBack(r.x,r.y,d,f,p,h,1/0,n,i,a,0,0,0,0,0);this.boxEndIndex=t.length}e.exports=n,n.prototype._addLineCollisionBoxes=function(t,e,r,n,i,a,o,s,l){var c=a/2,u=Math.floor(i/c),f=-a/2,h=this.boxes,d=r,p=n+1,m=f;do{if(--p<0)return h;m-=e[p].dist(d),d=e[p]}while(m>-i/2);for(var v=e[p].dist(e[p+1]),g=0;g<u;g++){for(var y=-i/2+g*c;m+v<y;){if(m+=v,++p+1>=e.length)return h;v=e[p].dist(e[p+1])}var b=y-m,x=e[p],_=e[p+1].sub(x)._unit()._mult(b)._add(x)._round(),w=i/2/Math.max(Math.abs(y-f)-c/2,0);t.emplaceBack(_.x,_.y,-a/2,-a/2,a/2,a/2,w,o,s,l,0,0,0,0,0)}return h}},{}],368:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../data/bucket").EXTENT,a=t("grid-index");function o(t,e,r){if("object"==typeof t){var n=t;r=e,t=n.angle,e=n.pitch,this.grid=new a(n.grid),this.ignoredGrid=new a(n.ignoredGrid)}else this.grid=new a(i,12,6),this.ignoredGrid=new a(i,12,0);this.angle=t,this.pitch=e;var o=Math.sin(t),s=Math.cos(t);if(this.rotationMatrix=[s,-o,o,s],this.reverseRotationMatrix=[s,o,-o,s],this.yStretch=1/Math.cos(e/180*Math.PI),this.yStretch=Math.pow(this.yStretch,1.3),this.collisionBoxArray=r,0===r.length){r.emplaceBack();r.emplaceBack(0,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(i,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,0,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,i,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0)}this.tempCollisionBox=r.get(0),this.edges=[r.get(1),r.get(2),r.get(3),r.get(4)]}e.exports=o,o.prototype.serialize=function(){var t={angle:this.angle,pitch:this.pitch,grid:this.grid.toArrayBuffer(),ignoredGrid:this.ignoredGrid.toArrayBuffer()};return{data:t,transferables:[t.grid,t.ignoredGrid]}},o.prototype.minScale=.25,o.prototype.maxScale=2,o.prototype.placeCollisionFeature=function(t,e,r){for(var i=this.collisionBoxArray,a=this.minScale,o=this.rotationMatrix,s=this.yStretch,l=t.boxStartIndex;l<t.boxEndIndex;l++){var c=i.get(l),u=c.anchorPoint._matMult(o),f=u.x,h=u.y,d=f+c.x1,p=h+c.y1*s,m=f+c.x2,v=h+c.y2*s;if(c.bbox0=d,c.bbox1=p,c.bbox2=m,c.bbox3=v,!e)for(var g=this.grid.query(d,p,m,v),y=0;y<g.length;y++){var b=i.get(g[y]),x=b.anchorPoint._matMult(o);if((a=this.getPlacementScale(a,u,c,x,b))>=this.maxScale)return a}if(r){var _;if(this.angle){var w=this.reverseRotationMatrix,M=new n(c.x1,c.y1).matMult(w),k=new n(c.x2,c.y1).matMult(w),A=new n(c.x1,c.y2).matMult(w),T=new n(c.x2,c.y2).matMult(w);(_=this.tempCollisionBox).anchorPointX=c.anchorPoint.x,_.anchorPointY=c.anchorPoint.y,_.x1=Math.min(M.x,k.x,A.x,T.x),_.y1=Math.min(M.y,k.x,A.x,T.x),_.x2=Math.max(M.x,k.x,A.x,T.x),_.y2=Math.max(M.y,k.x,A.x,T.x),_.maxScale=c.maxScale}else _=c;for(var E=0;E<this.edges.length;E++){var S=this.edges[E];if((a=this.getPlacementScale(a,c.anchorPoint,_,S.anchorPoint,S))>=this.maxScale)return a}}}return a},o.prototype.queryRenderedSymbols=function(t,e,r,i,a){var o={},s=[],l=this.collisionBoxArray,c=this.rotationMatrix,u=new n(t,e)._matMult(c),f=this.tempCollisionBox;f.anchorX=u.x,f.anchorY=u.y,f.x1=0,f.y1=0,f.x2=r-t,f.y2=i-e,f.maxScale=a,a=f.maxScale;for(var h=[u.x+f.x1/a,u.y+f.y1/a*this.yStretch,u.x+f.x2/a,u.y+f.y2/a*this.yStretch],d=this.grid.query(h[0],h[1],h[2],h[3]),p=this.ignoredGrid.query(h[0],h[1],h[2],h[3]),m=0;m<p.length;m++)d.push(p[m]);for(var v=0;v<d.length;v++){var g=l.get(d[v]),y=g.sourceLayerIndex,b=g.featureIndex;if(void 0===o[y]&&(o[y]={}),!o[y][b]){var x=g.anchorPoint.matMult(c);this.getPlacementScale(this.minScale,u,f,x,g)>=a&&(o[y][b]=!0,s.push(d[v]))}}return s},o.prototype.getPlacementScale=function(t,e,r,n,i){var a=e.x-n.x,o=e.y-n.y,s=(i.x1-r.x2)/a,l=(i.x2-r.x1)/a,c=(i.y1-r.y2)*this.yStretch/o,u=(i.y2-r.y1)*this.yStretch/o;(isNaN(s)||isNaN(l))&&(s=l=1),(isNaN(c)||isNaN(u))&&(c=u=1);var f=Math.min(Math.max(s,l),Math.max(c,u)),h=i.maxScale,d=r.maxScale;return f>h&&(f=h),f>d&&(f=d),f>t&&f>=i.placementScale&&(t=f),t},o.prototype.insertCollisionFeature=function(t,e,r){for(var n=r?this.ignoredGrid:this.grid,i=this.collisionBoxArray,a=t.boxStartIndex;a<t.boxEndIndex;a++){var o=i.get(a);o.placementScale=e,e<this.maxScale&&n.insert(a,o.bbox0,o.bbox1,o.bbox2,o.bbox3)}}},{"../data/bucket":301,"grid-index":254,"point-geometry":458}],369:[function(t,e,r){"use strict";var n=t("../util/interpolate"),i=t("../symbol/anchor"),a=t("./check_max_angle");e.exports=function(t,e,r,o,s,l,c,u,f){var h=o?.6*l*c:0,d=Math.max(o?o.right-o.left:0,s?s.right-s.left:0),p=0===t[0].x||t[0].x===f||0===t[0].y||t[0].y===f;e-d*c<e/4&&(e=d*c+e/4);return function t(e,r,o,s,l,c,u,f,h){var d=c/2;var p=0;for(var m=0;m<e.length-1;m++)p+=e[m].dist(e[m+1]);var v=0,g=r-o;var y=[];for(var b=0;b<e.length-1;b++){for(var x=e[b],_=e[b+1],w=x.dist(_),M=_.angleTo(x);g+o<v+w;){var k=((g+=o)-v)/w,A=n(x.x,_.x,k),T=n(x.y,_.y,k);if(A>=0&&A<h&&T>=0&&T<h&&g-d>=0&&g+d<=p){var E=new i(A,T,M,b)._round();s&&!a(e,E,c,s,l)||y.push(E)}}v+=w}f||y.length||u||(y=t(e,v/2,o,s,l,c,u,!0,h));return y}(t,p?e/2*u%e:(d/2+2*l)*c*u%e,e,h,r,d*c,p,!1,f)}},{"../symbol/anchor":363,"../util/interpolate":408,"./check_max_angle":364}],370:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/util"),a=128;function o(){this.width=a,this.height=a,this.bin=new n(this.width,this.height),this.index={},this.ids={},this.data=new Uint8Array(this.width*this.height)}e.exports=o,o.prototype.getGlyphs=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]=[]),n[e].push(r);return n},o.prototype.getRects=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]={}),n[e][r]=this.index[i];return n},o.prototype.addGlyph=function(t,e,r,n){if(!r)return null;var a=e+"#"+r.id;if(this.index[a])return this.ids[a].indexOf(t)<0&&this.ids[a].push(t),this.index[a];if(!r.bitmap)return null;var o=r.width+2*n,s=r.height+2*n,l=o+2,c=s+2;l+=4-l%4,c+=4-c%4;var u=this.bin.packOne(l,c);if(u||(this.resize(),u=this.bin.packOne(l,c)),!u)return i.warnOnce("glyph bitmap overflow"),null;this.index[a]=u,this.ids[a]=[t];for(var f=this.data,h=r.bitmap,d=0;d<s;d++)for(var p=this.width*(u.y+d+1)+u.x+1,m=o*d,v=0;v<o;v++)f[p+v]=h[m+v];return this.dirty=!0,u},o.prototype.resize=function(){var t=this.width,e=this.height;if(!(t>=2048||e>=2048)){this.texture&&(this.gl&&this.gl.deleteTexture(this.texture),this.texture=null),this.width*=4,this.height*=4,this.bin.resize(this.width,this.height);for(var r=new ArrayBuffer(this.width*this.height),n=0;n<e;n++){var i=new Uint8Array(this.data.buffer,e*n,t);new Uint8Array(r,e*n*4,t).set(i)}this.data=new Uint8Array(r)}},o.prototype.bind=function(t){this.gl=t,this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,this.width,this.height,0,t.ALPHA,t.UNSIGNED_BYTE,null))},o.prototype.updateTexture=function(t){this.bind(t),this.dirty&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.ALPHA,t.UNSIGNED_BYTE,this.data),this.dirty=!1)}},{"../util/util":414,"shelf-pack":501}],371:[function(t,e,r){"use strict";var n=t("../util/mapbox").normalizeGlyphsURL,i=t("../util/ajax").getArrayBuffer,a=t("../util/glyphs"),o=t("../symbol/glyph_atlas"),s=t("pbf");function l(t){this.url=t&&n(t),this.atlases={},this.stacks={},this.loading={}}function c(t,e,r){this.advance=t.advance,this.left=t.left-r-1,this.top=t.top+r+1,this.rect=e}e.exports=l,l.prototype.getSimpleGlyphs=function(t,e,r,n){void 0===this.stacks[t]&&(this.stacks[t]={}),void 0===this.atlases[t]&&(this.atlases[t]=new o);for(var i,a={},s=this.stacks[t],l=this.atlases[t],u={},f=0,h=0;h<e.length;h++){var d=e[h];if(s[i=Math.floor(d/256)]){var p=s[i].glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}else void 0===u[i]&&(u[i]=[],f++),u[i].push(d)}f||n(void 0,a,t);var v=function(e,i,o){if(!e)for(var s=this.stacks[t][i]=o.stacks[0],h=0;h<u[i].length;h++){var d=u[i][h],p=s.glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}--f||n(void 0,a,t)}.bind(this);for(var g in u)this.loadRange(t,g,v)},l.prototype.loadRange=function(t,e,r){if(256*e>65535)return r("glyphs > 65535 not supported");void 0===this.loading[t]&&(this.loading[t]={});var n=this.loading[t];if(n[e])n[e].push(r);else{n[e]=[r];var o=function(t,e,r,n){return n=n||"abc",r.replace("{s}",n[t.length%n.length]).replace("{fontstack}",t).replace("{range}",e)}(t,256*e+"-"+(256*e+255),this.url);i(o,function(t,r){for(var i=!t&&new a(new s(new Uint8Array(r))),o=0;o<n[e].length;o++)n[e][o](t,e,i);delete n[e]})}},l.prototype.getGlyphAtlas=function(t){return this.atlases[t]}},{"../symbol/glyph_atlas":370,"../util/ajax":397,"../util/glyphs":407,"../util/mapbox":411,pbf:451}],372:[function(t,e,r){"use strict";e.exports=function(t,e,r){var n,i={},a={},o=[],s=[],l=[],c=0;function u(n){o.push(t[n]),s.push(r[n]),l.push(e[n]),c++}function f(t,e,r){var n=a[t];return delete a[t],a[e]=n,s[n][0].pop(),s[n][0]=s[n][0].concat(r[0]),n}function h(t,e,r){var n=i[e];return delete i[e],i[t]=n,s[n][0].shift(),s[n][0]=r[0].concat(s[n][0]),n}function d(t,e,r){var n=r?e[0][e[0].length-1]:e[0][0];return t+":"+n.x+":"+n.y}for(n=0;n<t.length;n++){var p=r[n],m=e[n];if(m){var v=d(m,p),g=d(m,p,!0);if(v in a&&g in i&&a[v]!==i[g]){var y=h(v,g,p),b=f(v,g,s[y]);delete i[v],delete a[g],a[d(m,s[b],!0)]=b,s[y]=null}else v in a?f(v,g,p):g in i?h(v,g,p):(u(n),i[v]=c-1,a[g]=c-1)}else u(n)}return{features:o,textFeatures:l,geometries:s}}},{}],373:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports={getIconQuads:function(t,e,r,o,s,l,c,u,f){var h,d,p,m,v=e.image.rect,g=s.layout,y=e.left-1,b=y+v.w/e.image.pixelRatio,x=e.top-1,_=x+v.h/e.image.pixelRatio;if("none"!==g["icon-text-fit"]&&c){var w=b-y,M=_-x,k=g["text-size"]/24,A=c.left*k,T=c.right*k,E=c.top*k,S=c.bottom*k,L=T-A,C=S-E,P=g["icon-text-fit-padding"][0],z=g["icon-text-fit-padding"][1],O=g["icon-text-fit-padding"][2],D=g["icon-text-fit-padding"][3],I="width"===g["icon-text-fit"]?.5*(C-M):0,R="height"===g["icon-text-fit"]?.5*(L-w):0,N="width"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?L:w,F="height"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?C:M;h=new n(A+R-D,E+I-P),d=new n(A+R+z+N,E+I-P),p=new n(A+R+z+N,E+I+O+F),m=new n(A+R-D,E+I+O+F)}else h=new n(y,x),d=new n(b,x),p=new n(b,_),m=new n(y,_);var j=s.getLayoutValue("icon-rotate",u,f)*Math.PI/180;if(l){var B=o[t.segment];if(t.y===B.y&&t.x===B.x&&t.segment+1<o.length){var U=o[t.segment+1];j+=Math.atan2(t.y-U.y,t.x-U.x)+Math.PI}else j+=Math.atan2(t.y-B.y,t.x-B.x)}if(j){var V=Math.sin(j),q=Math.cos(j),H=[q,-V,V,q];h=h.matMult(H),d=d.matMult(H),m=m.matMult(H),p=p.matMult(H)}return[new a(new n(t.x,t.y),h,d,m,p,e.image.rect,0,0,i,1/0)]},getGlyphQuads:function(t,e,r,s,l,c){for(var u=l.layout["text-rotate"]*Math.PI/180,f=l.layout["text-keep-upright"],h=e.positionedGlyphs,d=[],p=0;p<h.length;p++){var m=h[p],v=m.glyph,g=v.rect;if(g){var y,b=(m.x+v.advance/2)*r,x=i;c?(x=o(y=[],t,b,s,t.segment,!0),f&&(x=Math.min(x,o(y,t,b,s,t.segment,!1)))):y=[{anchorPoint:new n(t.x,t.y),offset:0,angle:0,maxScale:1/0,minScale:i}];for(var _=m.x+v.left,w=m.y-v.top,M=_+g.w,k=w+g.h,A=new n(_,w),T=new n(M,w),E=new n(_,k),S=new n(M,k),L=0;L<y.length;L++){var C=y[L],P=A,z=T,O=E,D=S;if(u){var I=Math.sin(u),R=Math.cos(u),N=[R,-I,I,R];P=P.matMult(N),z=z.matMult(N),O=O.matMult(N),D=D.matMult(N)}var F=Math.max(C.minScale,x),j=(t.angle+C.offset+2*Math.PI)%(2*Math.PI),B=(C.angle+C.offset+2*Math.PI)%(2*Math.PI);d.push(new a(C.anchorPoint,P,z,O,D,g,j,B,F,C.maxScale))}}}return d},SymbolQuad:a};var i=.5;function a(t,e,r,n,i,a,o,s,l,c){this.anchorPoint=t,this.tl=e,this.tr=r,this.bl=n,this.br=i,this.tex=a,this.anchorAngle=o,this.glyphAngle=s,this.minScale=l,this.maxScale=c}function o(t,e,r,a,o,s){var l=!s;r<0&&(s=!s),s&&o++;var c=new n(e.x,e.y),u=a[o],f=1/0;r=Math.abs(r);for(var h=i;;){var d=c.dist(u),p=r/d,m=Math.atan2(u.y-c.y,u.x-c.x);if(s||(m+=Math.PI),t.push({anchorPoint:c,offset:l?Math.PI:0,minScale:p,maxScale:f,angle:(m+2*Math.PI)%(2*Math.PI)}),p<=h)break;for(c=u;c.equals(u);)if(!(u=a[o+=s?1:-1]))return p;var v=u.sub(c)._unit();c=c.sub(v._mult(d)),f=p}return h}},{"point-geometry":458}],374:[function(t,e,r){"use strict";var n=t("../util/token");e.exports=function(t,e,r){for(var i=[],a=0,o=t.length;a<o;a++){var s=n(t[a].properties,e["text-field"]);if(s){s=s.toString();var l=e["text-transform"];"uppercase"===l?s=s.toLocaleUpperCase():"lowercase"===l&&(s=s.toLocaleLowerCase());for(var c=0;c<s.length;c++)r[s.charCodeAt(c)]=!0;i[a]=s}else i[a]=null}return i}},{"../util/token":413}],375:[function(t,e,r){"use strict";function n(t,e,r,n){this.codePoint=t,this.x=e,this.y=r,this.glyph=n}e.exports={shapeText:function(t,e,r,s,l,c,u,f,h){for(var d=[],p=new function(t,e,r,n,i,a){this.positionedGlyphs=t,this.text=e,this.top=r,this.bottom=n,this.left=i,this.right=a}(d,t,h[1],h[1],h[0],h[0]),m=0,v=0;v<t.length;v++){var g=t.charCodeAt(v),y=e[g];y&&(d.push(new n(g,m,-17,y)),m+=y.advance+f)}return!!d.length&&(function(t,e,r,n,s,l,c,u){var f=null,h=0,d=0,p=0,m=0,v=t.positionedGlyphs;if(n)for(var g=0;g<v.length;g++){var y=v[g];if(y.x-=h,y.y+=r*p,y.x>n&&null!==f){var b=v[f+1].x;m=Math.max(b,m);for(var x=f+1;x<=g;x++)v[x].y+=r,v[x].x-=b;if(c){var _=f;i[v[f].codePoint]&&_--,o(v,e,d,_,c)}d=f+1,f=null,h+=b,p++}a[y.codePoint]&&(f=g)}var w=v[v.length-1],M=w.x+e[w.codePoint].advance;m=Math.max(m,M);var k=(p+1)*r;o(v,e,d,v.length-1,c),function(t,e,r,n,i,a,o,s){for(var l=(e-r)*i+s[0],c=(-n*(o+1)+.5)*a+s[1],u=0;u<t.length;u++)t[u].x+=l,t[u].y+=c}(v,c,s,l,m,r,p,u),t.top+=-l*k,t.bottom=t.top+k,t.left+=-s*m,t.right=t.left+m}(p,e,s,r,l,c,u,h),p)},shapeIcon:function(t,e){if(!t||!t.rect)return null;var r=e["icon-offset"][0],n=e["icon-offset"][1],i=r-t.width/2,a=i+t.width,o=n-t.height/2,s=o+t.height;return new function(t,e,r,n,i){this.image=t,this.top=e,this.bottom=r,this.left=n,this.right=i}(t,o,s,i,a)}};var i={32:!0,8203:!0},a={32:!0,38:!0,43:!0,45:!0,47:!0,173:!0,183:!0,8203:!0,8208:!0,8211:!0};function o(t,e,r,n,i){for(var a=e[t[n].codePoint].advance,o=(t[n].x+a)*i,s=r;s<=n;s++)t[s].x-=o}},{}],376:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/browser"),a=t("../util/util");function o(t,e){this.width=t,this.height=e,this.bin=new n(t,e),this.images={},this.data=!1,this.texture=0,this.filter=0,this.pixelRatio=1,this.dirty=!0}e.exports=o,o.prototype.allocateImage=function(t,e){var r=(t/=this.pixelRatio)+2+(4-(t+2)%4),n=(e/=this.pixelRatio)+2+(4-(e+2)%4),i=this.bin.packOne(r,n);return i||(a.warnOnce("SpriteAtlas out of space."),null)},o.prototype.getImage=function(t,e){if(this.images[t])return this.images[t];if(!this.sprite)return null;var r=this.sprite.getSpritePosition(t);if(!r.width||!r.height)return null;var n=this.allocateImage(r.width,r.height);if(!n)return null;var i=new function(t,e,r,n,i){this.rect=t,this.width=e,this.height=r,this.sdf=n,this.pixelRatio=i}(n,r.width/r.pixelRatio,r.height/r.pixelRatio,r.sdf,r.pixelRatio/this.pixelRatio);return this.images[t]=i,this.copy(n,r,e),i},o.prototype.getPosition=function(t,e){var r=this.getImage(t,e),n=r&&r.rect;if(!n)return null;var i=r.width*r.pixelRatio,a=r.height*r.pixelRatio;return{size:[r.width,r.height],tl:[(n.x+1)/this.width,(n.y+1)/this.height],br:[(n.x+1+i)/this.width,(n.y+1+a)/this.height]}},o.prototype.allocate=function(){if(!this.data){var t=Math.floor(this.width*this.pixelRatio),e=Math.floor(this.height*this.pixelRatio);this.data=new Uint32Array(t*e);for(var r=0;r<this.data.length;r++)this.data[r]=0}},o.prototype.copy=function(t,e,r){if(this.sprite.img.data){var n=new Uint32Array(this.sprite.img.data.buffer);this.allocate();var i=this.data;!function(t,e,r,n,i,a,o,s,l,c,u){var f,h,d=n*e+r,p=s*a+o;if(u)for(p-=a,h=-1;h<=c;d=((++h+c)%c+n)*e+r,p+=a)for(f=-1;f<=l;f++)i[p+f]=t[d+(f+l)%l];else for(h=0;h<c;h++,d+=e,p+=a)for(f=0;f<l;f++)i[p+f]=t[d+f]}(n,this.sprite.img.width,e.x,e.y,i,this.width*this.pixelRatio,(t.x+1)*this.pixelRatio,(t.y+1)*this.pixelRatio,e.width,e.height,r),this.dirty=!0}},o.prototype.setSprite=function(t){t&&(this.pixelRatio=i.devicePixelRatio>1?2:1,this.canvas&&(this.canvas.width=this.width*this.pixelRatio,this.canvas.height=this.height*this.pixelRatio)),this.sprite=t},o.prototype.addIcons=function(t,e){for(var r=0;r<t.length;r++)this.getImage(t[r]);e(null,this.images)},o.prototype.bind=function(t,e){var r=!1;this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),r=!0);var n=e?t.LINEAR:t.NEAREST;n!==this.filter&&(t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,n),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,n),this.filter=n),this.dirty&&(this.allocate(),r?t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width*this.pixelRatio,this.height*this.pixelRatio,0,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)):t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width*this.pixelRatio,this.height*this.pixelRatio,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)),this.dirty=!1)}},{"../util/browser":398,"../util/util":414,"shelf-pack":501}],377:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Uint16",name:"textBoxStartIndex"},{type:"Uint16",name:"textBoxEndIndex"},{type:"Uint16",name:"iconBoxStartIndex"},{type:"Uint16",name:"iconBoxEndIndex"},{type:"Uint16",name:"glyphQuadStartIndex"},{type:"Uint16",name:"glyphQuadEndIndex"},{type:"Uint16",name:"iconQuadStartIndex"},{type:"Uint16",name:"iconQuadEndIndex"},{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int8",name:"index"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],378:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=t("./quads").SymbolQuad,s=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Float32",name:"tlX"},{type:"Float32",name:"tlY"},{type:"Float32",name:"trX"},{type:"Float32",name:"trY"},{type:"Float32",name:"blX"},{type:"Float32",name:"blY"},{type:"Float32",name:"brX"},{type:"Float32",name:"brY"},{type:"Int16",name:"texH"},{type:"Int16",name:"texW"},{type:"Int16",name:"texX"},{type:"Int16",name:"texY"},{type:"Float32",name:"anchorAngle"},{type:"Float32",name:"glyphAngle"},{type:"Float32",name:"maxScale"},{type:"Float32",name:"minScale"}]});i.extendAll(s.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)},get SymbolQuad(){return new o(this.anchorPoint,new a(this.tlX,this.tlY),new a(this.trX,this.trY),new a(this.blX,this.blY),new a(this.brX,this.brY),{x:this.texX,y:this.texY,h:this.texH,w:this.texW,height:this.texH,width:this.texW},this.anchorAngle,this.glyphAngle,this.minScale,this.maxScale)}})},{"../util/struct_array":412,"../util/util":414,"./quads":373,"point-geometry":458}],379:[function(t,e,r){"use strict";var n=t("../util/dom"),i=t("point-geometry"),a={scrollZoom:t("./handler/scroll_zoom"),boxZoom:t("./handler/box_zoom"),dragRotate:t("./handler/drag_rotate"),dragPan:t("./handler/drag_pan"),keyboard:t("./handler/keyboard"),doubleClickZoom:t("./handler/dblclick_zoom"),touchZoomRotate:t("./handler/touch_zoom_rotate")};e.exports=function(t,e){var r=t.getCanvasContainer(),o=null,s=null,l=null;for(var c in a)t[c]=new a[c](t,e),e.interactive&&e[c]&&t[c].enable();function u(){l=null}function f(e,i){var a=n.mousePos(r,i);return t.fire(e,{lngLat:t.unproject(a),point:a,originalEvent:i})}function h(e,a){var o=n.touchPos(r,a),s=o.reduce(function(t,e,r,n){return t.add(e.div(n.length))},new i(0,0));return t.fire(e,{lngLat:t.unproject(s),point:s,lngLats:o.map(function(e){return t.unproject(e)},this),points:o,originalEvent:a})}r.addEventListener("mouseout",function(t){f("mouseout",t)},!1),r.addEventListener("mousedown",function(e){t.stop(),s=n.mousePos(r,e),f("mousedown",e)},!1),r.addEventListener("mouseup",function(e){var r=t.dragRotate&&t.dragRotate.isActive();o&&!r&&f("contextmenu",o);o=null,f("mouseup",e)},!1),r.addEventListener("mousemove",function(e){if(t.dragPan&&t.dragPan.isActive())return;if(t.dragRotate&&t.dragRotate.isActive())return;var n=e.toElement||e.target;for(;n&&n!==r;)n=n.parentNode;if(n!==r)return;f("mousemove",e)},!1),r.addEventListener("touchstart",function(e){if(t.stop(),h("touchstart",e),!e.touches||e.touches.length>1)return;l?(clearTimeout(l),l=null,f("dblclick",e)):l=setTimeout(u,300)},!1),r.addEventListener("touchend",function(t){h("touchend",t)},!1),r.addEventListener("touchmove",function(t){h("touchmove",t)},!1),r.addEventListener("touchcancel",function(t){h("touchcancel",t)},!1),r.addEventListener("click",function(t){n.mousePos(r,t).equals(s)&&f("click",t)},!1),r.addEventListener("dblclick",function(t){f("dblclick",t),t.preventDefault()},!1),r.addEventListener("contextmenu",function(t){o=t,t.preventDefault()},!1)}},{"../util/dom":400,"./handler/box_zoom":385,"./handler/dblclick_zoom":386,"./handler/drag_pan":387,"./handler/drag_rotate":388,"./handler/keyboard":389,"./handler/scroll_zoom":390,"./handler/touch_zoom_rotate":391,"point-geometry":458}],380:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate"),a=t("../util/browser"),o=t("../geo/lng_lat"),s=t("../geo/lng_lat_bounds"),l=t("point-geometry"),c=e.exports=function(){};n.extend(c.prototype,{getCenter:function(){return this.transform.center},setCenter:function(t,e){return this.jumpTo({center:t},e),this},panBy:function(t,e,r){return this.panTo(this.transform.center,n.extend({offset:l.convert(t).mult(-1)},e),r),this},panTo:function(t,e,r){return this.easeTo(n.extend({center:t},e),r)},getZoom:function(){return this.transform.zoom},setZoom:function(t,e){return this.jumpTo({zoom:t},e),this},zoomTo:function(t,e,r){return this.easeTo(n.extend({zoom:t},e),r)},zoomIn:function(t,e){return this.zoomTo(this.getZoom()+1,t,e),this},zoomOut:function(t,e){return this.zoomTo(this.getZoom()-1,t,e),this},getBearing:function(){return this.transform.bearing},setBearing:function(t,e){return this.jumpTo({bearing:t},e),this},rotateTo:function(t,e,r){return this.easeTo(n.extend({bearing:t},e),r)},resetNorth:function(t,e){return this.rotateTo(0,n.extend({duration:1e3},t),e),this},snapToNorth:function(t,e){return Math.abs(this.getBearing())<this._bearingSnap?this.resetNorth(t,e):this},getPitch:function(){return this.transform.pitch},setPitch:function(t,e){return this.jumpTo({pitch:t},e),this},fitBounds:function(t,e,r){e=n.extend({padding:0,offset:[0,0],maxZoom:1/0},e),t=s.convert(t);var i=l.convert(e.offset),a=this.transform,o=a.project(t.getNorthWest()),c=a.project(t.getSouthEast()),u=c.sub(o),f=(a.width-2*e.padding-2*Math.abs(i.x))/u.x,h=(a.height-2*e.padding-2*Math.abs(i.y))/u.y;return e.center=a.unproject(o.add(c).div(2)),e.zoom=Math.min(a.scaleZoom(a.scale*Math.min(f,h)),e.maxZoom),e.bearing=0,e.linear?this.easeTo(e,r):this.flyTo(e,r)},jumpTo:function(t,e){this.stop();var r=this.transform,n=!1,i=!1,a=!1;return"zoom"in t&&r.zoom!==+t.zoom&&(n=!0,r.zoom=+t.zoom),"center"in t&&(r.center=o.convert(t.center)),"bearing"in t&&r.bearing!==+t.bearing&&(i=!0,r.bearing=+t.bearing),"pitch"in t&&r.pitch!==+t.pitch&&(a=!0,r.pitch=+t.pitch),this.fire("movestart",e).fire("move",e),n&&this.fire("zoomstart",e).fire("zoom",e).fire("zoomend",e),i&&this.fire("rotate",e),a&&this.fire("pitch",e),this.fire("moveend",e)},easeTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],duration:500,easing:n.ease},t);var r,a,s=this.transform,c=l.convert(t.offset),u=this.getZoom(),f=this.getBearing(),h=this.getPitch(),d="zoom"in t?+t.zoom:u,p="bearing"in t?this._normalizeBearing(t.bearing,f):f,m="pitch"in t?+t.pitch:h;"center"in t?(r=o.convert(t.center),a=s.centerPoint.add(c)):"around"in t?(r=o.convert(t.around),a=s.locationPoint(r)):(a=s.centerPoint.add(c),r=s.pointLocation(a));var v=s.locationPoint(r);return!1===t.animate&&(t.duration=0),this.zooming=d!==u,this.rotating=f!==p,this.pitching=m!==h,t.noMoveStart||this.fire("movestart",e),this.zooming&&this.fire("zoomstart",e),clearTimeout(this._onEaseEnd),this._ease(function(t){this.zooming&&(s.zoom=i(u,d,t)),this.rotating&&(s.bearing=i(f,p,t)),this.pitching&&(s.pitch=i(h,m,t)),s.setLocationAtPoint(r,v.add(a.sub(v)._mult(t))),this.fire("move",e),this.zooming&&this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){t.delayEndEvents?this._onEaseEnd=setTimeout(this._easeToEnd.bind(this,e),t.delayEndEvents):this._easeToEnd(e)}.bind(this),t),this},_easeToEnd:function(t){var e=this.zooming;this.zooming=!1,this.rotating=!1,this.pitching=!1,e&&this.fire("zoomend",t),this.fire("moveend",t)},flyTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],speed:1.2,curve:1.42,easing:n.ease},t);var r=this.transform,a=l.convert(t.offset),s=this.getZoom(),c=this.getBearing(),u=this.getPitch(),f="center"in t?o.convert(t.center):this.getCenter(),h="zoom"in t?+t.zoom:s,d="bearing"in t?this._normalizeBearing(t.bearing,c):c,p="pitch"in t?+t.pitch:u;Math.abs(r.center.lng)+Math.abs(f.lng)>180&&(r.center.lng>0&&f.lng<0?f.lng+=360:r.center.lng<0&&f.lng>0&&(f.lng-=360));var m=r.zoomScale(h-s),v=r.point,g="center"in t?r.project(f).sub(a.div(m)):v,y=r.worldSize,b=t.curve,x=Math.max(r.width,r.height),_=x/m,w=g.sub(v).mag();if("minZoom"in t){var M=n.clamp(Math.min(t.minZoom,s,h),r.minZoom,r.maxZoom),k=x/r.zoomScale(M-s);b=Math.sqrt(k/w*2)}var A=b*b;function T(t){var e=(_*_-x*x+(t?-1:1)*A*A*w*w)/(2*(t?_:x)*A*w);return Math.log(Math.sqrt(e*e+1)-e)}function E(t){return(Math.exp(t)-Math.exp(-t))/2}function S(t){return(Math.exp(t)+Math.exp(-t))/2}var L=T(0),C=function(t){return S(L)/S(L+b*t)},P=function(t){return x*((S(L)*(E(e=L+b*t)/S(e))-E(L))/A)/w;var e},z=(T(1)-L)/b;if(Math.abs(w)<1e-6){if(Math.abs(x-_)<1e-6)return this.easeTo(t);var O=_<x?-1:1;z=Math.abs(Math.log(_/x))/b,P=function(){return 0},C=function(t){return Math.exp(O*b*t)}}if("duration"in t)t.duration=+t.duration;else{var D="screenSpeed"in t?+t.screenSpeed/b:+t.speed;t.duration=1e3*z/D}return this.zooming=!0,c!==d&&(this.rotating=!0),u!==p&&(this.pitching=!0),this.fire("movestart",e),this.fire("zoomstart",e),this._ease(function(t){var n=t*z,a=P(n);r.zoom=s+r.scaleZoom(1/C(n)),r.center=r.unproject(v.add(g.sub(v).mult(a)),y),this.rotating&&(r.bearing=i(c,d,t)),this.pitching&&(r.pitch=i(u,p,t)),this.fire("move",e),this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){this.zooming=!1,this.rotating=!1,this.pitching=!1,this.fire("zoomend",e),this.fire("moveend",e)},t),this},isEasing:function(){return!!this._abortFn},stop:function(){return this._abortFn&&(this._abortFn(),this._finishEase()),this},_ease:function(t,e,r){this._finishFn=e,this._abortFn=a.timed(function(e){t.call(this,r.easing(e)),1===e&&this._finishEase()},!1===r.animate?0:r.duration,this)},_finishEase:function(){delete this._abortFn;var t=this._finishFn;delete this._finishFn,t.call(this)},_normalizeBearing:function(t,e){t=n.wrap(t,-180,180);var r=Math.abs(t-e);return Math.abs(t-360-e)<r&&(t-=360),Math.abs(t+360-e)<r&&(t+=360),t},_updateEasing:function(t,e,r){var i;if(this.ease){var a=this.ease,o=(Date.now()-a.start)/a.duration,s=a.easing(o+.01)-a.easing(o),l=.27/Math.sqrt(s*s+1e-4)*.01,c=Math.sqrt(.0729-l*l);i=n.bezier(l,c,.25,1)}else i=r?n.bezier.apply(n,r):n.ease;return this.ease={start:(new Date).getTime(),to:Math.pow(2,e),duration:t,easing:i},i}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../util/browser":398,"../util/interpolate":408,"../util/util":414,"point-geometry":458}],381:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}e.exports=o,o.createAttributionString=function(t){var e=[];for(var r in t){var n=t[r];n.attribution&&e.indexOf(n.attribution)<0&&e.push(n.attribution)}return e.sort(function(t,e){return t.length-e.length}),(e=e.filter(function(t,r){for(var n=r+1;n<e.length;n++)if(e[n].indexOf(t)>=0)return!1;return!0})).join(" | ")},o.prototype=a.inherit(n,{options:{position:"bottom-right"},onAdd:function(t){var e=this._container=i.create("div","mapboxgl-ctrl-attrib",t.getContainer());return this._update(),t.on("source.load",this._update.bind(this)),t.on("source.change",this._update.bind(this)),t.on("source.remove",this._update.bind(this)),t.on("moveend",this._updateEditLink.bind(this)),e},_update:function(){this._map.style&&(this._container.innerHTML=o.createAttributionString(this._map.style.sources)),this._editLink=this._container.getElementsByClassName("mapbox-improve-map")[0],this._updateEditLink()},_updateEditLink:function(){if(this._editLink){var t=this._map.getCenter();this._editLink.href="https://www.mapbox.com/map-feedback/#/"+t.lng+"/"+t.lat+"/"+Math.round(this._map.getZoom()+1)}}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],382:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../../util/evented");function a(){}e.exports=a,a.prototype={addTo:function(t){this._map=t;var e=this._container=this.onAdd(t);if(this.options&&this.options.position){var r=this.options.position,n=t._controlCorners[r];e.className+=" mapboxgl-ctrl",-1!==r.indexOf("bottom")?n.insertBefore(e,n.firstChild):n.appendChild(e)}return this},remove:function(){return this._container.parentNode.removeChild(this._container),this.onRemove&&this.onRemove(this._map),this._map=null,this}},n.extend(a.prototype,i)},{"../../util/evented":406,"../../util/util":414}],383:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/browser"),a=t("../../util/dom"),o=t("../../util/util");e.exports=l;var s={enableHighAccuracy:!1,timeout:6e3};function l(t){o.setOptions(this,t)}l.prototype=o.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e=this._container=a.create("div","mapboxgl-ctrl-group",t.getContainer());return i.supportsGeolocation?(this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._geolocateButton=a.create("button","mapboxgl-ctrl-icon mapboxgl-ctrl-geolocate",this._container),this._geolocateButton.type="button",this._geolocateButton.addEventListener("click",this._onClickGeolocate.bind(this)),e):e},_onContextMenu:function(t){t.preventDefault()},_onClickGeolocate:function(){navigator.geolocation.getCurrentPosition(this._success.bind(this),this._error.bind(this),s),this._timeoutId=setTimeout(this._finish.bind(this),1e4)},_success:function(t){this._map.jumpTo({center:[t.coords.longitude,t.coords.latitude],zoom:17,bearing:0,pitch:0}),this.fire("geolocate",t),this._finish()},_error:function(t){this.fire("error",t),this._finish()},_finish:function(){this._timeoutId&&clearTimeout(this._timeoutId),this._timeoutId=void 0}})},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414,"./control":382}],384:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}function s(t){return new MouseEvent(t.type,{button:2,buttons:2,bubbles:!0,cancelable:!0,detail:t.detail,view:t.view,screenX:t.screenX,screenY:t.screenY,clientX:t.clientX,clientY:t.clientY,movementX:t.movementX,movementY:t.movementY,ctrlKey:t.ctrlKey,shiftKey:t.shiftKey,altKey:t.altKey,metaKey:t.metaKey})}e.exports=o,o.prototype=a.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e="mapboxgl-ctrl",r=this._container=i.create("div",e+"-group",t.getContainer());return this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._zoomInButton=this._createButton(e+"-icon "+e+"-zoom-in",t.zoomIn.bind(t)),this._zoomOutButton=this._createButton(e+"-icon "+e+"-zoom-out",t.zoomOut.bind(t)),this._compass=this._createButton(e+"-icon "+e+"-compass",t.resetNorth.bind(t)),this._compassArrow=i.create("div","arrow",this._compass),this._compass.addEventListener("mousedown",this._onCompassDown.bind(this)),this._onCompassMove=this._onCompassMove.bind(this),this._onCompassUp=this._onCompassUp.bind(this),t.on("rotate",this._rotateCompassArrow.bind(this)),this._rotateCompassArrow(),this._el=t.getCanvasContainer(),r},_onContextMenu:function(t){t.preventDefault()},_onCompassDown:function(t){0===t.button&&(i.disableDrag(),document.addEventListener("mousemove",this._onCompassMove),document.addEventListener("mouseup",this._onCompassUp),this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassMove:function(t){0===t.button&&(this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassUp:function(t){0===t.button&&(document.removeEventListener("mousemove",this._onCompassMove),document.removeEventListener("mouseup",this._onCompassUp),i.enableDrag(),this._el.dispatchEvent(s(t)),t.stopPropagation())},_createButton:function(t,e){var r=i.create("button",t,this._container);return r.type="button",r.addEventListener("click",function(){e()}),r},_rotateCompassArrow:function(){var t="rotate("+this._map.transform.angle*(180/Math.PI)+"deg)";this._compassArrow.style.transform=t}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],385:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../geo/lng_lat_bounds"),a=t("../../util/util");function o(t){this._map=t,this._el=t.getCanvasContainer(),this._container=t.getContainer(),a.bindHandlers(this)}e.exports=o,o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onMouseDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onMouseDown),this._enabled=!1)},_onMouseDown:function(t){t.shiftKey&&0===t.button&&(document.addEventListener("mousemove",this._onMouseMove,!1),document.addEventListener("keydown",this._onKeyDown,!1),document.addEventListener("mouseup",this._onMouseUp,!1),n.disableDrag(),this._startPos=n.mousePos(this._el,t),this._active=!0)},_onMouseMove:function(t){var e=this._startPos,r=n.mousePos(this._el,t);this._box||(this._box=n.create("div","mapboxgl-boxzoom",this._container),this._container.classList.add("mapboxgl-crosshair"),this._fireEvent("boxzoomstart",t));var i=Math.min(e.x,r.x),a=Math.max(e.x,r.x),o=Math.min(e.y,r.y),s=Math.max(e.y,r.y);n.setTransform(this._box,"translate("+i+"px,"+o+"px)"),this._box.style.width=a-i+"px",this._box.style.height=s-o+"px"},_onMouseUp:function(t){if(0===t.button){var e=this._startPos,r=n.mousePos(this._el,t),a=new i(this._map.unproject(e),this._map.unproject(r));this._finish(),e.x===r.x&&e.y===r.y?this._fireEvent("boxzoomcancel",t):this._map.fitBounds(a,{linear:!0}).fire("boxzoomend",{originalEvent:t,boxZoomBounds:a})}},_onKeyDown:function(t){27===t.keyCode&&(this._finish(),this._fireEvent("boxzoomcancel",t))},_finish:function(){this._active=!1,document.removeEventListener("mousemove",this._onMouseMove,!1),document.removeEventListener("keydown",this._onKeyDown,!1),document.removeEventListener("mouseup",this._onMouseUp,!1),this._container.classList.remove("mapboxgl-crosshair"),this._box&&(this._box.parentNode.removeChild(this._box),this._box=null),n.enableDrag()},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})}}},{"../../geo/lng_lat_bounds":312,"../../util/dom":400,"../../util/util":414}],386:[function(t,e,r){"use strict";function n(t){this._map=t,this._onDblClick=this._onDblClick.bind(this)}e.exports=n,n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._map.on("dblclick",this._onDblClick),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._map.off("dblclick",this._onDblClick),this._enabled=!1)},_onDblClick:function(t){this._map.zoomTo(this._map.getZoom()+(t.originalEvent.shiftKey?-1:1),{around:t.lngLat},t)}}},{}],387:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.3,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._el.addEventListener("touchstart",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._el.removeEventListener("touchstart",this._onDown),this._enabled=!1)},_onDown:function(t){this._ignoreEvent(t)||this.isActive()||(t.touches?(document.addEventListener("touchmove",this._onMove),document.addEventListener("touchend",this._onTouchEnd)):(document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onMouseUp)),this._active=!1,this._startPos=this._pos=n.mousePos(this._el,t),this._inertia=[[Date.now(),this._pos]])},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("dragstart",t),this._fireEvent("movestart",t));var e=n.mousePos(this._el,t),r=this._map;r.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),e]),r.transform.setLocationAtPoint(r.transform.pointLocation(this._pos),e),this._fireEvent("drag",t),this._fireEvent("move",t),this._pos=e,t.preventDefault()}},_onUp:function(t){if(this.isActive()){this._active=!1,this._fireEvent("dragend",t),this._drainInertiaBuffer();var e=function(){this._fireEvent("moveend",t)}.bind(this),r=this._inertia;if(r.length<2)e();else{var n=r[r.length-1],i=r[0],o=n[1].sub(i[1]),s=(n[0]-i[0])/1e3;if(0===s||n[1].equals(i[1]))e();else{var l=o.mult(.3/s),c=l.mag();c>1400&&(c=1400,l._unit()._mult(c));var u=c/750,f=l.mult(-u/2);this._map.panBy(f,{duration:1e3*u,easing:a,noMoveStart:!0},{originalEvent:t})}}}},_onMouseUp:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onMouseUp))},_onTouchEnd:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onTouchEnd))},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragRotate&&e.dragRotate.isActive())return!0;if(t.touches)return t.touches.length>1;if(t.ctrlKey)return!0;return"mousemove"===t.type?!1&t.buttons:0!==t.button},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],388:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("point-geometry"),a=t("../../util/util");e.exports=s;var o=a.bezier(0,0,.25,1);function s(t,e){this._map=t,this._el=t.getCanvasContainer(),this._bearingSnap=e.bearingSnap,a.bindHandlers(this)}s.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._enabled=!1)},_onDown:function(t){if(!this._ignoreEvent(t)&&!this.isActive()){document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onUp),this._active=!1,this._inertia=[[Date.now(),this._map.getBearing()]],this._startPos=this._pos=n.mousePos(this._el,t),this._center=this._map.transform.centerPoint;var e=this._startPos.sub(this._center);e.mag()<200&&(this._center=this._startPos.add(new i(-200,0)._rotate(e.angle()))),t.preventDefault()}},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("rotatestart",t),this._fireEvent("movestart",t));var e=this._map;e.stop();var r=this._pos,i=n.mousePos(this._el,t),a=this._center,o=r.sub(a).angleWith(i.sub(a))/Math.PI*180,s=e.getBearing()-o,l=this._inertia,c=l[l.length-1];this._drainInertiaBuffer(),l.push([Date.now(),e._normalizeBearing(s,c[1])]),e.transform.bearing=s,this._fireEvent("rotate",t),this._fireEvent("move",t),this._pos=i}},_onUp:function(t){if(!this._ignoreEvent(t)&&(document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onUp),this.isActive())){this._active=!1,this._fireEvent("rotateend",t),this._drainInertiaBuffer();var e=this._map,r=e.getBearing(),n=this._inertia,i=function(){Math.abs(r)<this._bearingSnap?e.resetNorth({noMoveStart:!0},{originalEvent:t}):this._fireEvent("moveend",t)}.bind(this);if(n.length<2)i();else{var a=n[0],s=n[n.length-1],l=n[n.length-2],c=e._normalizeBearing(r,l[1]),u=s[1]-a[1],f=u<0?-1:1,h=(s[0]-a[0])/1e3;if(0!==u&&0!==h){var d=Math.abs(u*(.25/h));d>180&&(d=180);var p=d/180;c+=f*d*(p/2),Math.abs(e._normalizeBearing(c,0))<this._bearingSnap&&(c=e._normalizeBearing(0,c)),e.rotateTo(c,{duration:1e3*p,easing:o,noMoveStart:!0},{originalEvent:t})}else i()}}},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragPan&&e.dragPan.isActive())return!0;if(t.touches)return t.touches.length>1;var r=t.ctrlKey?1:2,n=t.ctrlKey?0:2;return"mousemove"===t.type?t.buttons&0===r:t.button!==n},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414,"point-geometry":458}],389:[function(t,e,r){"use strict";e.exports=n;function n(t){this._map=t,this._el=t.getCanvasContainer(),this._onKeyDown=this._onKeyDown.bind(this)}n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("keydown",this._onKeyDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("keydown",this._onKeyDown),this._enabled=!1)},_onKeyDown:function(t){if(!(t.altKey||t.ctrlKey||t.metaKey)){var e=this._map,r={originalEvent:t};if(!e.isEasing())switch(t.keyCode){case 61:case 107:case 171:case 187:e.zoomTo(Math.round(e.getZoom())+(t.shiftKey?2:1),r);break;case 189:case 109:case 173:e.zoomTo(Math.round(e.getZoom())-(t.shiftKey?2:1),r);break;case 37:t.shiftKey?e.easeTo({bearing:e.getBearing()-2},r):(t.preventDefault(),e.panBy([-80,0],r));break;case 39:t.shiftKey?e.easeTo({bearing:e.getBearing()+2},r):(t.preventDefault(),e.panBy([80,0],r));break;case 38:t.shiftKey?e.easeTo({pitch:e.getPitch()+5},r):(t.preventDefault(),e.panBy([0,-80],r));break;case 40:t.shiftKey?e.easeTo({pitch:Math.max(e.getPitch()-5,0)},r):(t.preventDefault(),e.panBy([0,80],r))}}}}},{}],390:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/browser"),a=t("../../util/util");e.exports=c;var o="undefined"!=typeof navigator?navigator.userAgent.toLowerCase():"",s=-1!==o.indexOf("firefox"),l=-1!==o.indexOf("safari")&&-1===o.indexOf("chrom");function c(t){this._map=t,this._el=t.getCanvasContainer(),a.bindHandlers(this)}c.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("wheel",this._onWheel,!1),this._el.addEventListener("mousewheel",this._onWheel,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("wheel",this._onWheel),this._el.removeEventListener("mousewheel",this._onWheel),this._enabled=!1)},_onWheel:function(t){var e;"wheel"===t.type?(e=t.deltaY,s&&t.deltaMode===window.WheelEvent.DOM_DELTA_PIXEL&&(e/=i.devicePixelRatio),t.deltaMode===window.WheelEvent.DOM_DELTA_LINE&&(e*=40)):"mousewheel"===t.type&&(e=-t.wheelDeltaY,l&&(e/=3));var r=i.now(),a=r-(this._time||0);this._pos=n.mousePos(this._el,t),this._time=r,0!==e&&e%4.000244140625==0?(this._type="wheel",e=Math.floor(e/4)):0!==e&&Math.abs(e)<4?this._type="trackpad":a>400?(this._type=null,this._lastValue=e,this._timeout=setTimeout(this._onTimeout,40)):this._type||(this._type=Math.abs(a*e)<200?"trackpad":"wheel",this._timeout&&(clearTimeout(this._timeout),this._timeout=null,e+=this._lastValue)),t.shiftKey&&e&&(e/=4),this._type&&this._zoom(-e,t),t.preventDefault()},_onTimeout:function(){this._type="wheel",this._zoom(-this._lastValue)},_zoom:function(t,e){if(0!==t){var r=this._map,n=2/(1+Math.exp(-Math.abs(t/100)));t<0&&0!==n&&(n=1/n);var i=r.ease?r.ease.to:r.transform.scale,a=r.transform.scaleZoom(i*n);r.zoomTo(a,{duration:0,around:r.unproject(this._pos),delayEndEvents:200},{originalEvent:e})}}}},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414}],391:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.15,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("touchstart",this._onStart,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("touchstart",this._onStart),this._enabled=!1)},disableRotation:function(){this._rotationDisabled=!0},enableRotation:function(){this._rotationDisabled=!1},_onStart:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]);this._startVec=e.sub(r),this._startScale=this._map.transform.scale,this._startBearing=this._map.transform.bearing,this._gestureIntent=void 0,this._inertia=[],document.addEventListener("touchmove",this._onMove,!1),document.addEventListener("touchend",this._onEnd,!1)}},_onMove:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]),i=e.add(r).div(2),a=e.sub(r),o=a.mag()/this._startVec.mag(),s=this._rotationDisabled?0:180*a.angleWith(this._startVec)/Math.PI,l=this._map;if(this._gestureIntent){var c={duration:0,around:l.unproject(i)};"rotate"===this._gestureIntent&&(c.bearing=this._startBearing+s),"zoom"!==this._gestureIntent&&"rotate"!==this._gestureIntent||(c.zoom=l.transform.scaleZoom(this._startScale*o)),l.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),o,i]),l.easeTo(c,{originalEvent:t})}else{var u=Math.abs(1-o)>.15;Math.abs(s)>4?this._gestureIntent="rotate":u&&(this._gestureIntent="zoom"),this._gestureIntent&&(this._startVec=a,this._startScale=l.transform.scale,this._startBearing=l.transform.bearing)}t.preventDefault()}},_onEnd:function(t){document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onEnd),this._drainInertiaBuffer();var e=this._inertia,r=this._map;if(e.length<2)r.snapToNorth({},{originalEvent:t});else{var n=e[e.length-1],i=e[0],o=r.transform.scaleZoom(this._startScale*n[1]),s=r.transform.scaleZoom(this._startScale*i[1]),l=o-s,c=(n[0]-i[0])/1e3,u=n[2];if(0!==c&&o!==s){var f=.15*l/c;Math.abs(f)>2.5&&(f=f>0?2.5:-2.5);var h=1e3*Math.abs(f/(12*.15)),d=o+f*h/2e3;d<0&&(d=0),r.easeTo({zoom:d,duration:h,easing:a,around:r.unproject(u)},{originalEvent:t})}else r.snapToNorth({},{originalEvent:t})}},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>2&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],392:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util");function i(){n.bindAll(["_onHashChange","_updateHash"],this)}i.prototype={addTo:function(t){return this._map=t,window.addEventListener("hashchange",this._onHashChange,!1),this._map.on("moveend",this._updateHash),this},remove:function(){return window.removeEventListener("hashchange",this._onHashChange,!1),this._map.off("moveend",this._updateHash),delete this._map,this},_onHashChange:function(){var t=location.hash.replace("#","").split("/");return t.length>=3&&(this._map.jumpTo({center:[+t[2],+t[1]],zoom:+t[0],bearing:+(t[3]||0)}),!0)},_updateHash:function(){var t=this._map.getCenter(),e=this._map.getZoom(),r=this._map.getBearing(),n=Math.max(0,Math.ceil(Math.log(e)/Math.LN2)),i="#"+Math.round(100*e)/100+"/"+t.lat.toFixed(n)+"/"+t.lng.toFixed(n)+(r?"/"+Math.round(10*r)/10:"");window.history.replaceState("","",i)}}},{"../util/util":414}],393:[function(t,e,r){"use strict";var n=t("../util/canvas"),i=t("../util/util"),a=t("../util/browser"),o=t("../util/browser").window,s=t("../util/evented"),l=t("../util/dom"),c=t("../style/style"),u=t("../style/animation_loop"),f=t("../render/painter"),h=t("../geo/transform"),d=t("./hash"),p=t("./bind_handlers"),m=t("./camera"),v=t("../geo/lng_lat"),g=t("../geo/lng_lat_bounds"),y=t("point-geometry"),b=t("./control/attribution"),x={center:[0,0],zoom:0,bearing:0,pitch:0,minZoom:0,maxZoom:20,interactive:!0,scrollZoom:!0,boxZoom:!0,dragRotate:!0,dragPan:!0,keyboard:!0,doubleClickZoom:!0,touchZoomRotate:!0,bearingSnap:7,hash:!1,attributionControl:!0,failIfMajorPerformanceCaveat:!1,preserveDrawingBuffer:!1,trackResize:!0,workerCount:Math.max(a.hardwareConcurrency-1,1)},_=e.exports=function(t){if((t=i.extend({},x,t)).workerCount<1)throw new Error("workerCount must an integer greater than or equal to 1.");this._interactive=t.interactive,this._failIfMajorPerformanceCaveat=t.failIfMajorPerformanceCaveat,this._preserveDrawingBuffer=t.preserveDrawingBuffer,this._trackResize=t.trackResize,this._workerCount=t.workerCount,this._bearingSnap=t.bearingSnap,"string"==typeof t.container?this._container=document.getElementById(t.container):this._container=t.container,this.animationLoop=new u,this.transform=new h(t.minZoom,t.maxZoom),t.maxBounds&&this.setMaxBounds(t.maxBounds),i.bindAll(["_forwardStyleEvent","_forwardSourceEvent","_forwardLayerEvent","_forwardTileEvent","_onStyleLoad","_onStyleChange","_onSourceAdd","_onSourceRemove","_onSourceUpdate","_onWindowOnline","_onWindowResize","_update","_render"],this),this._setupContainer(),this._setupPainter(),this.on("move",this._update.bind(this,!1)),this.on("zoom",this._update.bind(this,!0)),this.on("moveend",function(){this.animationLoop.set(300),this._rerender()}.bind(this)),void 0!==o&&(o.addEventListener("online",this._onWindowOnline,!1),o.addEventListener("resize",this._onWindowResize,!1)),p(this,t),this._hash=t.hash&&(new d).addTo(this),this._hash&&this._hash._onHashChange()||this.jumpTo({center:t.center,zoom:t.zoom,bearing:t.bearing,pitch:t.pitch}),this.stacks={},this._classes=[],this.resize(),t.classes&&this.setClasses(t.classes),t.style&&this.setStyle(t.style),t.attributionControl&&this.addControl(new b(t.attributionControl));var e=this.fire.bind(this,"error");this.on("style.error",e),this.on("source.error",e),this.on("tile.error",e),this.on("layer.error",e)};function w(t){t.parentNode&&t.parentNode.removeChild(t)}i.extend(_.prototype,s),i.extend(_.prototype,m.prototype),i.extend(_.prototype,{addControl:function(t){return t.addTo(this),this},addClass:function(t,e){return this._classes.indexOf(t)>=0||""===t?this:(this._classes.push(t),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},removeClass:function(t,e){var r=this._classes.indexOf(t);return r<0||""===t?this:(this._classes.splice(r,1),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},setClasses:function(t,e){for(var r={},n=0;n<t.length;n++)""!==t[n]&&(r[t[n]]=!0);return this._classes=Object.keys(r),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0)},hasClass:function(t){return this._classes.indexOf(t)>=0},getClasses:function(){return this._classes},resize:function(){var t=0,e=0;return this._container&&(t=this._container.offsetWidth||400,e=this._container.offsetHeight||300),this._canvas.resize(t,e),this.transform.resize(t,e),this.painter.resize(t,e),this.fire("movestart").fire("move").fire("resize").fire("moveend")},getBounds:function(){var t=new g(this.transform.pointLocation(new y(0,0)),this.transform.pointLocation(this.transform.size));return(this.transform.angle||this.transform.pitch)&&(t.extend(this.transform.pointLocation(new y(this.transform.size.x,0))),t.extend(this.transform.pointLocation(new y(0,this.transform.size.y)))),t},setMaxBounds:function(t){if(t){var e=g.convert(t);this.transform.lngRange=[e.getWest(),e.getEast()],this.transform.latRange=[e.getSouth(),e.getNorth()],this.transform._constrain(),this._update()}else null!==t&&void 0!==t||(this.transform.lngRange=[],this.transform.latRange=[],this._update());return this},setMinZoom:function(t){if((t=null===t||void 0===t?0:t)>=0&&t<=this.transform.maxZoom)return this.transform.minZoom=t,this._update(),this.getZoom()<t&&this.setZoom(t),this;throw new Error("minZoom must be between 0 and the current maxZoom, inclusive")},setMaxZoom:function(t){if((t=null===t||void 0===t?20:t)>=this.transform.minZoom&&t<=20)return this.transform.maxZoom=t,this._update(),this.getZoom()>t&&this.setZoom(t),this;throw new Error("maxZoom must be between the current minZoom and 20, inclusive")},project:function(t){return this.transform.locationPoint(v.convert(t))},unproject:function(t){return this.transform.pointLocation(y.convert(t))},queryRenderedFeatures:function(){var t,e,r={};return 2===arguments.length?(t=arguments[0],r=arguments[1]):1===arguments.length&&((e=arguments[0])instanceof y||Array.isArray(e))?t=arguments[0]:1===arguments.length&&(r=arguments[0]),this.style.queryRenderedFeatures(this._makeQueryGeometry(t),r,this.transform.zoom,this.transform.angle)},_makeQueryGeometry:function(t){var e;if(void 0===t&&(t=[y.convert([0,0]),y.convert([this.transform.width,this.transform.height])]),t instanceof y||"number"==typeof t[0]){e=[y.convert(t)]}else{var r=[y.convert(t[0]),y.convert(t[1])];e=[r[0],new y(r[1].x,r[0].y),r[1],new y(r[0].x,r[1].y),r[0]]}return e=e.map(function(t){return this.transform.pointCoordinate(t)}.bind(this))},querySourceFeatures:function(t,e){return this.style.querySourceFeatures(t,e)},setStyle:function(t){return this.style&&(this.style.off("load",this._onStyleLoad).off("error",this._forwardStyleEvent).off("change",this._onStyleChange).off("source.add",this._onSourceAdd).off("source.remove",this._onSourceRemove).off("source.load",this._onSourceUpdate).off("source.error",this._forwardSourceEvent).off("source.change",this._onSourceUpdate).off("layer.add",this._forwardLayerEvent).off("layer.remove",this._forwardLayerEvent).off("layer.error",this._forwardLayerEvent).off("tile.add",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.load",this._update).off("tile.error",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent)._remove(),this.off("rotate",this.style._redoPlacement),this.off("pitch",this.style._redoPlacement)),t?(this.style=t instanceof c?t:new c(t,this.animationLoop,this._workerCount),this.style.on("load",this._onStyleLoad).on("error",this._forwardStyleEvent).on("change",this._onStyleChange).on("source.add",this._onSourceAdd).on("source.remove",this._onSourceRemove).on("source.load",this._onSourceUpdate).on("source.error",this._forwardSourceEvent).on("source.change",this._onSourceUpdate).on("layer.add",this._forwardLayerEvent).on("layer.remove",this._forwardLayerEvent).on("layer.error",this._forwardLayerEvent).on("tile.add",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.load",this._update).on("tile.error",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this.on("rotate",this.style._redoPlacement),this.on("pitch",this.style._redoPlacement),this):(this.style=null,this)},getStyle:function(){if(this.style)return this.style.serialize()},addSource:function(t,e){return this.style.addSource(t,e),this._update(!0),this},addSourceType:function(t,e,r){return this.style.addSourceType(t,e,r)},removeSource:function(t){return this.style.removeSource(t),this._update(!0),this},getSource:function(t){return this.style.getSource(t)},addLayer:function(t,e){return this.style.addLayer(t,e),this._update(!0),this},removeLayer:function(t){return this.style.removeLayer(t),this._update(!0),this},getLayer:function(t){return this.style.getLayer(t)},setFilter:function(t,e){return this.style.setFilter(t,e),this._update(!0),this},setLayerZoomRange:function(t,e,r){return this.style.setLayerZoomRange(t,e,r),this._update(!0),this},getFilter:function(t){return this.style.getFilter(t)},setPaintProperty:function(t,e,r,n){return this.style.setPaintProperty(t,e,r,n),this._update(!0),this},getPaintProperty:function(t,e,r){return this.style.getPaintProperty(t,e,r)},setLayoutProperty:function(t,e,r){return this.style.setLayoutProperty(t,e,r),this._update(!0),this},getLayoutProperty:function(t,e){return this.style.getLayoutProperty(t,e)},getContainer:function(){return this._container},getCanvasContainer:function(){return this._canvasContainer},getCanvas:function(){return this._canvas.getElement()},_setupContainer:function(){var t=this._container;t.classList.add("mapboxgl-map");var e=this._canvasContainer=l.create("div","mapboxgl-canvas-container",t);this._interactive&&e.classList.add("mapboxgl-interactive"),this._canvas=new n(this,e);var r=this._controlContainer=l.create("div","mapboxgl-control-container",t),i=this._controlCorners={};["top-left","top-right","bottom-left","bottom-right"].forEach(function(t){i[t]=l.create("div","mapboxgl-ctrl-"+t,r)})},_setupPainter:function(){var t=this._canvas.getWebGLContext({failIfMajorPerformanceCaveat:this._failIfMajorPerformanceCaveat,preserveDrawingBuffer:this._preserveDrawingBuffer});t?this.painter=new f(t,this.transform):this.fire("error",{error:new Error("Failed to initialize WebGL")})},_contextLost:function(t){t.preventDefault(),this._frameId&&a.cancelFrame(this._frameId),this.fire("webglcontextlost",{originalEvent:t})},_contextRestored:function(t){this._setupPainter(),this.resize(),this._update(),this.fire("webglcontextrestored",{originalEvent:t})},loaded:function(){return!this._styleDirty&&!this._sourcesDirty&&!(!this.style||!this.style.loaded())},_update:function(t){return this.style?(this._styleDirty=this._styleDirty||t,this._sourcesDirty=!0,this._rerender(),this):this},_render:function(){try{this.style&&this._styleDirty&&(this._styleDirty=!1,this.style.update(this._classes,this._classOptions),this._classOptions=null,this.style._recalculate(this.transform.zoom)),this.style&&this._sourcesDirty&&(this._sourcesDirty=!1,this.style._updateSources(this.transform)),this.painter.render(this.style,{debug:this.showTileBoundaries,showOverdrawInspector:this._showOverdrawInspector,vertices:this.vertices,rotating:this.rotating,zooming:this.zooming}),this.fire("render"),this.loaded()&&!this._loaded&&(this._loaded=!0,this.fire("load")),this._frameId=null,this.animationLoop.stopped()||(this._styleDirty=!0),(this._sourcesDirty||this._repaint||this._styleDirty)&&this._rerender()}catch(t){this.fire("error",{error:t})}return this},remove:function(){this._hash&&this._hash.remove(),a.cancelFrame(this._frameId),this.setStyle(null),void 0!==o&&o.removeEventListener("resize",this._onWindowResize,!1);var t=this.painter.gl.getExtension("WEBGL_lose_context");t&&t.loseContext(),w(this._canvasContainer),w(this._controlContainer),this._container.classList.remove("mapboxgl-map")},_rerender:function(){this.style&&!this._frameId&&(this._frameId=a.frame(this._render))},_forwardStyleEvent:function(t){this.fire("style."+t.type,i.extend({style:t.target},t))},_forwardSourceEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardLayerEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardTileEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_onStyleLoad:function(t){this.transform.unmodified&&this.jumpTo(this.style.stylesheet),this.style.update(this._classes,{transition:!1}),this._forwardStyleEvent(t)},_onStyleChange:function(t){this._update(!0),this._forwardStyleEvent(t)},_onSourceAdd:function(t){var e=t.source;e.onAdd&&e.onAdd(this),this._forwardSourceEvent(t)},_onSourceRemove:function(t){var e=t.source;e.onRemove&&e.onRemove(this),this._forwardSourceEvent(t)},_onSourceUpdate:function(t){this._update(),this._forwardSourceEvent(t)},_onWindowOnline:function(){this._update()},_onWindowResize:function(){this._trackResize&&this.stop().resize()._update()}}),i.extendAll(_.prototype,{_showTileBoundaries:!1,get showTileBoundaries(){return this._showTileBoundaries},set showTileBoundaries(t){this._showTileBoundaries!==t&&(this._showTileBoundaries=t,this._update())},_showCollisionBoxes:!1,get showCollisionBoxes(){return this._showCollisionBoxes},set showCollisionBoxes(t){this._showCollisionBoxes!==t&&(this._showCollisionBoxes=t,this.style._redoPlacement())},_showOverdrawInspector:!1,get showOverdrawInspector(){return this._showOverdrawInspector},set showOverdrawInspector(t){this._showOverdrawInspector!==t&&(this._showOverdrawInspector=t,this._update())},_repaint:!1,get repaint(){return this._repaint},set repaint(t){this._repaint=t,this._update()},_vertices:!1,get vertices(){return this._vertices},set vertices(t){this._vertices=t,this._update()}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../geo/transform":313,"../render/painter":327,"../style/animation_loop":347,"../style/style":350,"../util/browser":398,"../util/canvas":399,"../util/dom":400,"../util/evented":406,"../util/util":414,"./bind_handlers":379,"./camera":380,"./control/attribution":381,"./hash":392,"point-geometry":458}],394:[function(t,e,r){"use strict";e.exports=o;var n=t("../util/dom"),i=t("../geo/lng_lat"),a=t("point-geometry");function o(t,e){t||(t=n.create("div")),t.classList.add("mapboxgl-marker"),this._el=t,this._offset=a.convert(e&&e.offset||[0,0]),this._update=this._update.bind(this)}o.prototype={addTo:function(t){return this.remove(),this._map=t,t.getCanvasContainer().appendChild(this._el),t.on("move",this._update),this._update(),this},remove:function(){this._map&&(this._map.off("move",this._update),this._map=null);var t=this._el.parentNode;return t&&t.removeChild(this._el),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=i.convert(t),this._update(),this},getElement:function(){return this._el},_update:function(){if(this._map){var t=this._map.project(this._lngLat)._add(this._offset);n.setTransform(this._el,"translate("+t.x+"px,"+t.y+"px)")}}}},{"../geo/lng_lat":311,"../util/dom":400,"point-geometry":458}],395:[function(t,e,r){"use strict";e.exports=s;var n=t("../util/util"),i=t("../util/evented"),a=t("../util/dom"),o=t("../geo/lng_lat");function s(t){n.setOptions(this,t),n.bindAll(["_update","_onClickClose"],this)}s.prototype=n.inherit(i,{options:{closeButton:!0,closeOnClick:!0},addTo:function(t){return this._map=t,this._map.on("move",this._update),this.options.closeOnClick&&this._map.on("click",this._onClickClose),this._update(),this},remove:function(){return this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._container&&(this._container.parentNode.removeChild(this._container),delete this._container),this._map&&(this._map.off("move",this._update),this._map.off("click",this._onClickClose),delete this._map),this.fire("close"),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=o.convert(t),this._update(),this},setText:function(t){return this.setDOMContent(document.createTextNode(t))},setHTML:function(t){var e,r=document.createDocumentFragment(),n=document.createElement("body");for(n.innerHTML=t;e=n.firstChild;)r.appendChild(e);return this.setDOMContent(r)},setDOMContent:function(t){return this._createContent(),this._content.appendChild(t),this._update(),this},_createContent:function(){this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._content=a.create("div","mapboxgl-popup-content",this._container),this.options.closeButton&&(this._closeButton=a.create("button","mapboxgl-popup-close-button",this._content),this._closeButton.type="button",this._closeButton.innerHTML="&#215;",this._closeButton.addEventListener("click",this._onClickClose))},_update:function(){if(this._map&&this._lngLat&&this._content){this._container||(this._container=a.create("div","mapboxgl-popup",this._map.getContainer()),this._tip=a.create("div","mapboxgl-popup-tip",this._container),this._container.appendChild(this._content));var t=this._map.project(this._lngLat).round(),e=this.options.anchor;if(!e){var r=this._container.offsetWidth,n=this._container.offsetHeight;e=t.y<n?["top"]:t.y>this._map.transform.height-n?["bottom"]:[],t.x<r/2?e.push("left"):t.x>this._map.transform.width-r/2&&e.push("right"),e=0===e.length?"bottom":e.join("-")}var i={top:"translate(-50%,0)","top-left":"translate(0,0)","top-right":"translate(-100%,0)",bottom:"translate(-50%,-100%)","bottom-left":"translate(0,-100%)","bottom-right":"translate(-100%,-100%)",left:"translate(0,-50%)",right:"translate(-100%,-50%)"},o=this._container.classList;for(var s in i)o.remove("mapboxgl-popup-anchor-"+s);o.add("mapboxgl-popup-anchor-"+e),a.setTransform(this._container,i[e]+" translate("+t.x+"px,"+t.y+"px)")}},_onClickClose:function(){this.remove()}})},{"../geo/lng_lat":311,"../util/dom":400,"../util/evented":406,"../util/util":414}],396:[function(t,e,r){"use strict";function n(t,e){this.target=t,this.parent=e,this.callbacks={},this.callbackID=0,this.receive=this.receive.bind(this),this.target.addEventListener("message",this.receive,!1)}e.exports=n,n.prototype.receive=function(t){var e,r=t.data,n=r.id;if("<response>"===r.type)e=this.callbacks[r.id],delete this.callbacks[r.id],e&&e(r.error||null,r.data);else if(void 0!==r.id&&this.parent[r.type])this.parent[r.type](r.data,a.bind(this));else if(void 0!==r.id&&this.parent.workerSources){var i=r.type.split(".");this.parent.workerSources[i[0]][i[1]](r.data,a.bind(this))}else this.parent[r.type](r.data);function a(t,e,r){this.postMessage({type:"<response>",id:String(n),error:t?String(t):null,data:e},r)}},n.prototype.send=function(t,e,r,n){var i=null;r&&(this.callbacks[i=this.callbackID++]=r),this.postMessage({type:t,id:String(i),data:e},n)},n.prototype.postMessage=function(t,e){this.target.postMessage(t,e)}},{}],397:[function(t,e,r){"use strict";r.getJSON=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.setRequestHeader("Accept","application/json"),r.onerror=function(t){e(t)},r.onload=function(){if(r.status>=200&&r.status<300&&r.response){var t;try{t=JSON.parse(r.response)}catch(t){return e(t)}e(null,t)}else e(new Error(r.statusText))},r.send(),r},r.getArrayBuffer=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.responseType="arraybuffer",r.onerror=function(t){e(t)},r.onload=function(){r.status>=200&&r.status<300&&r.response?e(null,r.response):e(new Error(r.statusText))},r.send(),r},r.getImage=function(t,e){return r.getArrayBuffer(t,function(t,r){if(t)return e(t);var n=new Image;n.onload=function(){e(null,n),(window.URL||window.webkitURL).revokeObjectURL(n.src)};var i=new Blob([new Uint8Array(r)],{type:"image/png"});return n.src=(window.URL||window.webkitURL).createObjectURL(i),n.getData=function(){var t=document.createElement("canvas"),e=t.getContext("2d");return t.width=n.width,t.height=n.height,e.drawImage(n,0,0),e.getImageData(0,0,n.width,n.height).data},n})},r.getVideo=function(t,e){var r,n,i=document.createElement("video");i.onloadstart=function(){e(null,i)};for(var a=0;a<t.length;a++){var o=document.createElement("source");r=t[a],n=void 0,(n=document.createElement("a")).href=r,(n.protocol!==document.location.protocol||n.host!==document.location.host)&&(i.crossOrigin="Anonymous"),o.src=t[a],i.appendChild(o)}return i.getData=function(){return i},i}},{}],398:[function(t,e,r){"use strict";r.window=window,e.exports.now=window.performance&&window.performance.now?window.performance.now.bind(window.performance):Date.now.bind(Date);var n=window.requestAnimationFrame||window.mozRequestAnimationFrame||window.webkitRequestAnimationFrame||window.msRequestAnimationFrame;r.frame=function(t){return n(t)};var i=window.cancelAnimationFrame||window.mozCancelAnimationFrame||window.webkitCancelAnimationFrame||window.msCancelAnimationFrame;r.cancelFrame=function(t){i(t)},r.timed=function(t,n,i){if(!n)return t.call(i,1),null;var a=!1,o=e.exports.now();return r.frame(function s(l){a||((l=e.exports.now())>=o+n?t.call(i,1):(t.call(i,(l-o)/n),r.frame(s)))}),function(){a=!0}},r.supported=t("mapbox-gl-supported"),r.hardwareConcurrency=navigator.hardwareConcurrency||4,Object.defineProperty(r,"devicePixelRatio",{get:function(){return window.devicePixelRatio}}),r.supportsWebp=!1;var a=document.createElement("img");a.onload=function(){r.supportsWebp=!0},a.src="data:image/webp;base64,UklGRh4AAABXRUJQVlA4TBEAAAAvAQAAAAfQ//73v/+BiOh/AAA=",r.supportsGeolocation=!!navigator.geolocation},{"mapbox-gl-supported":299}],399:[function(t,e,r){"use strict";var n=t("../util"),i=t("mapbox-gl-supported");function a(t,e){this.canvas=document.createElement("canvas"),t&&e&&(this.canvas.style.position="absolute",this.canvas.classList.add("mapboxgl-canvas"),this.canvas.addEventListener("webglcontextlost",t._contextLost.bind(t),!1),this.canvas.addEventListener("webglcontextrestored",t._contextRestored.bind(t),!1),this.canvas.setAttribute("tabindex",0),e.appendChild(this.canvas))}e.exports=a,a.prototype.resize=function(t,e){var r=window.devicePixelRatio||1;this.canvas.width=r*t,this.canvas.height=r*e,this.canvas.style.width=t+"px",this.canvas.style.height=e+"px"},a.prototype.getWebGLContext=function(t){return t=n.extend({},t,i.webGLContextAttributes),this.canvas.getContext("webgl",t)||this.canvas.getContext("experimental-webgl",t)},a.prototype.getElement=function(){return this.canvas}},{"../util":414,"mapbox-gl-supported":299}],400:[function(t,e,r){"use strict";var n=t("point-geometry");r.create=function(t,e,r){var n=document.createElement(t);return e&&(n.className=e),r&&r.appendChild(n),n};var i=document.documentElement.style;function a(t){for(var e=0;e<t.length;e++)if(t[e]in i)return t[e]}var o,s=a(["userSelect","MozUserSelect","WebkitUserSelect","msUserSelect"]);r.disableDrag=function(){s&&(o=i[s],i[s]="none")},r.enableDrag=function(){s&&(i[s]=o)};var l=a(["transform","WebkitTransform"]);function c(t){t.preventDefault(),t.stopPropagation(),window.removeEventListener("click",c,!0)}r.setTransform=function(t,e){t.style[l]=e},r.suppressClick=function(){window.addEventListener("click",c,!0),window.setTimeout(function(){window.removeEventListener("click",c,!0)},0)},r.mousePos=function(t,e){var r=t.getBoundingClientRect();return e=e.touches?e.touches[0]:e,new n(e.clientX-r.left-t.clientLeft,e.clientY-r.top-t.clientTop)},r.touchPos=function(t,e){for(var r=t.getBoundingClientRect(),i=[],a=0;a<e.touches.length;a++)i.push(new n(e.touches[a].clientX-r.left-t.clientLeft,e.touches[a].clientY-r.top-t.clientTop));return i}},{"point-geometry":458}],401:[function(t,e,r){"use strict";var n=t("webworkify");e.exports=function(){return new n(t("../../source/worker"))}},{"../../source/worker":345,webworkify:558}],402:[function(t,e,r){"use strict";var n=t("quickselect");function i(t,e){return e.area-t.area}function a(t){for(var e,r,n=0,i=0,a=t.length,o=a-1;i<a;o=i++)e=t[i],n+=((r=t[o]).x-e.x)*(e.y+r.y);return n}e.exports=function(t,e){var r=t.length;if(r<=1)return[t];for(var o,s,l=[],c=0;c<r;c++){var u=a(t[c]);0!==u&&(t[c].area=Math.abs(u),void 0===s&&(s=u<0),s===u<0?(o&&l.push(o),o=[t[c]]):o.push(t[c]))}if(o&&l.push(o),e>1)for(var f=0;f<l.length;f++)l[f].length<=e||(n(l[f],e,1,l[f].length-1,i),l[f]=l[f].slice(0,e));return l}},{quickselect:475}],403:[function(t,e,r){"use strict";e.exports={API_URL:"https://api.mapbox.com",REQUIRE_ACCESS_TOKEN:!0}},{}],404:[function(t,e,r){"use strict";var n=t("assert");function i(t){this._stringToNumber={},this._numberToString=[];for(var e=0;e<t.length;e++){var r=t[e];this._stringToNumber[r]=e,this._numberToString[e]=r}}e.exports=i,i.prototype.encode=function(t){return n(t in this._stringToNumber),this._stringToNumber[t]},i.prototype.decode=function(t){return n(t<this._numberToString.length),this._numberToString[t]}},{assert:51}],405:[function(t,e,r){"use strict";var n=t("./util"),i=t("./actor"),a=t("./web_worker");function o(t,e){this.actors=[],this.currentActor=0;for(var r=0;r<t;r++){var n=new a,o=new i(n,e);o.name="Worker "+r,this.actors.push(o)}}e.exports=o,o.prototype={broadcast:function(t,e,r){r=r||function(){},n.asyncAll(this.actors,function(r,n){r.send(t,e,n)},r)},send:function(t,e,r,n,i){return("number"!=typeof n||isNaN(n))&&(n=this.currentActor=(this.currentActor+1)%this.actors.length),this.actors[n].send(t,e,r,i),n},remove:function(){for(var t=0;t<this.actors.length;t++)this.actors[t].target.terminate();this.actors=[]}}},{"./actor":396,"./util":414,"./web_worker":401}],406:[function(t,e,r){"use strict";var n=t("./util"),i={on:function(t,e){return this._events=this._events||{},this._events[t]=this._events[t]||[],this._events[t].push(e),this},off:function(t,e){if(!t)return delete this._events,this;if(!this.listens(t))return this;if(e){var r=this._events[t].indexOf(e);r>=0&&this._events[t].splice(r,1),this._events[t].length||delete this._events[t]}else delete this._events[t];return this},once:function(t,e){var r=function(n){this.off(t,r),e.call(this,n)}.bind(this);return this.on(t,r),this},fire:function(t,e){if(!this.listens(t))return n.endsWith(t,"error")&&console.error(e&&e.error||e||"Empty error event"),this;e=n.extend({},e),n.extend(e,{type:t,target:this});for(var r=this._events[t].slice(),i=0;i<r.length;i++)r[i].call(this,e);return this},listens:function(t){return!(!this._events||!this._events[t])}};e.exports=i},{"./util":414}],407:[function(t,e,r){"use strict";function n(t,e,r){if(1===t){var n=r.readMessage(i,{glyphs:{}});e.push(n)}}function i(t,e,r){if(1===t)e.name=r.readString();else if(2===t)e.range=r.readString();else if(3===t){var n=r.readMessage(a,{});e.glyphs[n.id]=n}}function a(t,e,r){1===t?e.id=r.readVarint():2===t?e.bitmap=r.readBytes():3===t?e.width=r.readVarint():4===t?e.height=r.readVarint():5===t?e.left=r.readSVarint():6===t?e.top=r.readSVarint():7===t&&(e.advance=r.readVarint())}e.exports=function(t,e){this.stacks=t.readFields(n,[],e)}},{}],408:[function(t,e,r){"use strict";function n(t,e,r){return t*(1-r)+e*r}e.exports=n,n.number=n,n.vec2=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r)]},n.color=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r),n(t[2],e[2],r),n(t[3],e[3],r)]},n.array=function(t,e,r){return t.map(function(t,i){return n(t,e[i],r)})}},{}],409:[function(t,e,r){"use strict";function n(t,e,r){if(t.length>1){if(i(t,e))return!0;for(var n=0;n<e.length;n++)if(s(e[n],t,r))return!0}for(var a=0;a<t.length;a++)if(s(t[a],e,r))return!0;return!1}function i(t,e){for(var r=0;r<t.length-1;r++)for(var n=t[r],i=t[r+1],a=0;a<e.length-1;a++){if(o(n,i,e[a],e[a+1]))return!0}return!1}function a(t,e,r){return(r.y-t.y)*(e.x-t.x)>(e.y-t.y)*(r.x-t.x)}function o(t,e,r,n){return a(t,r,n)!==a(e,r,n)&&a(t,e,r)!==a(t,e,n)}function s(t,e,r){var n=r*r;if(1===e.length)return t.distSqr(e[0])<n;for(var i=1;i<e.length;i++){if(l(t,e[i-1],e[i])<n)return!0}return!1}function l(t,e,r){var n=e.distSqr(r);if(0===n)return t.distSqr(e);var i=((t.x-e.x)*(r.x-e.x)+(t.y-e.y)*(r.y-e.y))/n;return i<0?t.distSqr(e):i>1?t.distSqr(r):t.distSqr(r.sub(e)._mult(i)._add(e))}function c(t,e){for(var r,n,i,a=!1,o=0;o<t.length;o++)for(var s=0,l=(r=t[o]).length-1;s<r.length;l=s++)n=r[s],i=r[l],n.y>e.y!=i.y>e.y&&e.x<(i.x-n.x)*(e.y-n.y)/(i.y-n.y)+n.x&&(a=!a);return a}function u(t,e){for(var r=!1,n=0,i=t.length-1;n<t.length;i=n++){var a=t[n],o=t[i];a.y>e.y!=o.y>e.y&&e.x<(o.x-a.x)*(e.y-a.y)/(o.y-a.y)+a.x&&(r=!r)}return r}e.exports={multiPolygonIntersectsBufferedMultiPoint:function(t,e,r){for(var n=0;n<t.length;n++)for(var i=t[n],a=0;a<e.length;a++)for(var o=e[a],l=0;l<o.length;l++){var c=o[l];if(u(i,c))return!0;if(s(c,i,r))return!0}return!1},multiPolygonIntersectsMultiPolygon:function(t,e){if(1===t.length&&1===t[0].length)return c(e,t[0][0]);for(var r=0;r<e.length;r++)for(var n=e[r],a=0;a<n.length;a++)if(c(t,n[a]))return!0;for(var o=0;o<t.length;o++){for(var s=t[o],l=0;l<s.length;l++)if(c(e,s[l]))return!0;for(var u=0;u<e.length;u++)if(i(s,e[u]))return!0}return!1},multiPolygonIntersectsBufferedMultiLine:function(t,e,r){for(var i=0;i<e.length;i++)for(var a=e[i],o=0;o<t.length;o++){var s=t[o];if(s.length>=3)for(var l=0;l<a.length;l++)if(u(s,a[l]))return!0;if(n(s,a,r))return!0}return!1}}},{}],410:[function(t,e,r){"use strict";function n(t,e){this.max=t,this.onRemove=e,this.reset()}e.exports=n,n.prototype.reset=function(){for(var t in this.data)this.onRemove(this.data[t]);return this.data={},this.order=[],this},n.prototype.add=function(t,e){if(this.has(t))this.order.splice(this.order.indexOf(t),1),this.data[t]=e,this.order.push(t);else if(this.data[t]=e,this.order.push(t),this.order.length>this.max){var r=this.get(this.order[0]);r&&this.onRemove(r)}return this},n.prototype.has=function(t){return t in this.data},n.prototype.keys=function(){return this.order},n.prototype.get=function(t){if(!this.has(t))return null;var e=this.data[t];return delete this.data[t],this.order.splice(this.order.indexOf(t),1),e},n.prototype.setMaxSize=function(t){for(this.max=t;this.order.length>this.max;){var e=this.get(this.order[0]);e&&this.onRemove(e)}return this}},{}],411:[function(t,e,r){"use strict";var n=t("./config"),i=t("./browser"),a=t("url"),o=t("./util");function s(t,e,r){if(!(r=r||n.ACCESS_TOKEN)&&n.REQUIRE_ACCESS_TOKEN)throw new Error("An API access token is required to use Mapbox GL. See https://www.mapbox.com/developers/api/#access-tokens");if(t=t.replace(/^mapbox:\/\//,n.API_URL+e),t+=-1!==t.indexOf("?")?"&access_token=":"?access_token=",n.REQUIRE_ACCESS_TOKEN){if("s"===r[0])throw new Error("Use a public access token (pk.*) with Mapbox GL JS, not a secret access token (sk.*). See https://www.mapbox.com/developers/api/#access-tokens");t+=r}return t}function l(t){return t?"?"+t:""}e.exports.normalizeStyleURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox:/"+r.pathname+l(r.query),"/styles/v1/",e)},e.exports.normalizeSourceURL=function(t,e){return"mapbox:"!==a.parse(t).protocol?t:s(t+".json","/v4/",e)+"&secure"},e.exports.normalizeGlyphsURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox://"+r.pathname.split("/")[1]+"/{fontstack}/{range}.pbf"+l(r.query),"/fonts/v1/",e)},e.exports.normalizeSpriteURL=function(t,e,r,n){var i=a.parse(t);return"mapbox:"!==i.protocol?(i.pathname+=e+r,a.format(i)):s("mapbox:/"+i.pathname+"/sprite"+e+r+l(i.query),"/styles/v1/",n)},e.exports.normalizeTileURL=function(t,e,r){var s=a.parse(t,!0);if(!e)return t;if("mapbox:"!==a.parse(e).protocol)return t;var l,c=i.supportsWebp?".webp":"$1",u=i.devicePixelRatio>=2||512===r?"@2x":"";return 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l=0,c=0;c<3;++c)l+=Math.pow(r[c]-e[c],2);this.radius.set(t,.5*Math.log(Math.max(l,1e-6))),this.center.set(t,r[0],r[1],r[2])},h.translate=function(t,e,r,n){this.center.move(t,e||0,r||0,n||0)},h.setMatrix=function(t,e){var r=this.computedRotation;s(r,e[0],e[1],e[2],e[4],e[5],e[6],e[8],e[9],e[10]),u(r,r),this.rotation.set(t,r[0],r[1],r[2],r[3]);var n=this.computedMatrix;o(n,e);var i=n[15];if(Math.abs(i)>1e-6){var a=n[12]/i,l=n[13]/i,c=n[14]/i;this.recalcMatrix(t);var f=Math.exp(this.computedRadius[0]);this.center.set(t,a-n[2]*f,l-n[6]*f,c-n[10]*f),this.radius.idle(t)}else this.center.idle(t),this.radius.idle(t)},h.setDistance=function(t,e){e>0&&this.radius.set(t,Math.log(e))},h.setDistanceLimits=function(t,e){t=t>0?Math.log(t):-1/0,e=e>0?Math.log(e):1/0,e=Math.max(e,t),this.radius.bounds[0][0]=t,this.radius.bounds[1][0]=e},h.getDistanceLimits=function(t){var e=this.radius.bounds;return 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translate, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\nuniform float miterLimit, dashLength, miterMode;\n\nvarying vec4 fragColor;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 tangent;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nconst float MAX_LINES = 256.;\nconst float REVERSE_THRESHOLD = -.875;\nconst float MIN_DIST = 1.;\n\n//TODO: possible optimizations: avoid overcalculating all for vertices and calc just one instead\n//TODO: precalculate dot products, normalize things beforehead etc.\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nbool isNaN( float val ){\n  return ( val < 0.0 || 0.0 < val || val == 0.0 ) ? false : true;\n}\n\nvoid main() {\n\tvec2 aCoord = aCoord, bCoord = bCoord, prevCoord = prevCoord, nextCoord = nextCoord;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineBot = 1. - lineTop;\n\tfloat depth = (MAX_LINES - 1. - id) / MAX_LINES;\n\n\tfragColor = (lineStart * aColor + lineEnd * bColor) / 255.;\n\n\tif (isNaN(aCoord.x) || isNaN(aCoord.y) || isNaN(bCoord.x) || isNaN(bCoord.y)) return;\n\n\tif (aCoord == prevCoord) prevCoord = aCoord + normalize(bCoord - aCoord);\n\tif (bCoord == nextCoord) nextCoord = bCoord - normalize(bCoord - aCoord);\n\n\tvec2 prevDiff = aCoord - prevCoord;\n\tvec2 currDiff = bCoord - aCoord;\n\tvec2 nextDiff = nextCoord - bCoord;\n\n\tvec2 prevDirection = normalize(prevDiff);\n\tvec2 currDirection = normalize(currDiff);\n\tvec2 nextDirection = normalize(nextDiff);\n\n\tvec2 prevTangent = normalize(prevDiff * scaleRatio);\n\tvec2 currTangent = normalize(currDiff * scaleRatio);\n\tvec2 nextTangent = normalize(nextDiff * scaleRatio);\n\n\tvec2 prevNormal = vec2(-prevTangent.y, prevTangent.x);\n\tvec2 currNormal = vec2(-currTangent.y, currTangent.x);\n\tvec2 nextNormal = vec2(-nextTangent.y, nextTangent.x);\n\n\tvec2 startJoinDirection = normalize(prevTangent - currTangent);\n\tvec2 endJoinDirection = normalize(currTangent - nextTangent);\n\n\t//collapsed/unidirectional segment cases\n\tif (prevDirection == currDirection) {\n\t\tstartJoinDirection = currNormal;\n\t}\n\tif (nextDirection == currDirection) {\n\t\tendJoinDirection = currNormal;\n\t}\n\tif (aCoord == bCoord) {\n\t\tendJoinDirection = startJoinDirection;\n\t\tcurrNormal = prevNormal;\n\t\tcurrTangent = prevTangent;\n\t}\n\n\ttangent = currTangent;\n\n\t//calculate join shifts relative to normals\n\tfloat startJoinShift = dot(currNormal, startJoinDirection);\n\tfloat endJoinShift = dot(currNormal, endJoinDirection);\n\n\tfloat startMiterRatio = abs(1. / startJoinShift);\n\tfloat endMiterRatio = abs(1. / endJoinShift);\n\n\tvec2 startJoin = startJoinDirection * startMiterRatio;\n\tvec2 endJoin = endJoinDirection * endMiterRatio;\n\n\tvec2 startTopJoin, startBotJoin, endTopJoin, endBotJoin;\n\tstartTopJoin = sign(startJoinShift) * startJoin * .5;\n\tstartBotJoin = -startTopJoin;\n\n\tendTopJoin = sign(endJoinShift) * endJoin * .5;\n\tendBotJoin = -endTopJoin;\n\n\tvec2 aTopCoord = aCoord + normalWidth * startTopJoin;\n\tvec2 bTopCoord = bCoord + normalWidth * endTopJoin;\n\tvec2 aBotCoord = aCoord + normalWidth * startBotJoin;\n\tvec2 bBotCoord = bCoord + normalWidth * endBotJoin;\n\n\t//miter anti-clipping\n\tfloat baClipping = distToLine(bCoord, aCoord, aBotCoord) / dot(normalize(normalWidth * endBotJoin), normalize(normalWidth.yx * vec2(-startBotJoin.y, startBotJoin.x)));\n\tfloat abClipping = distToLine(aCoord, bCoord, bTopCoord) / dot(normalize(normalWidth * startBotJoin), normalize(normalWidth.yx * vec2(-endBotJoin.y, endBotJoin.x)));\n\n\t//prevent close to reverse direction switch\n\tbool prevReverse = dot(currTangent, prevTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, prevNormal)) * min(length(prevDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\tbool nextReverse = dot(currTangent, nextTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, nextNormal)) * min(length(nextDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\n\tif (prevReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * startJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / startMiterRatio, 1.);\n\t\taBotCoord = aCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\taTopCoord = aCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!nextReverse && baClipping > 0. && baClipping < length(normalWidth * endBotJoin)) {\n\t\t//handle miter clipping\n\t\tbTopCoord -= normalWidth * endTopJoin;\n\t\tbTopCoord += normalize(endTopJoin * normalWidth) * baClipping;\n\t}\n\n\tif (nextReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * endJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / endMiterRatio, 1.);\n\t\tbBotCoord = bCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\tbTopCoord = bCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!prevReverse && abClipping > 0. && abClipping < length(normalWidth * startBotJoin)) {\n\t\t//handle miter clipping\n\t\taBotCoord -= normalWidth * startBotJoin;\n\t\taBotCoord += normalize(startBotJoin * normalWidth) * abClipping;\n\t}\n\n\tvec2 aTopPosition = (aTopCoord) * scale + translate;\n\tvec2 aBotPosition = (aBotCoord) * scale + translate;\n\n\tvec2 bTopPosition = (bTopCoord) * scale + translate;\n\tvec2 bBotPosition = (bBotCoord) * scale + translate;\n\n\t//position is normalized 0..1 coord on the screen\n\tvec2 position = (aTopPosition * lineTop + aBotPosition * lineBot) * lineStart + (bTopPosition * lineTop + bBotPosition * lineBot) * lineEnd;\n\n\tstartCoord = aCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\tendCoord = bCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\n\tgl_Position = vec4(position  * 2.0 - 1.0, depth, 1);\n\n\tenableStartMiter = step(dot(currTangent, prevTangent), .5);\n\tenableEndMiter = step(dot(currTangent, nextTangent), .5);\n\n\t//bevel miter cutoffs\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * miterLimit * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * miterLimit * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n\n\t//round miter cutoffs\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * abs(dot(startJoinDirection, currNormal)) * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * abs(dot(endJoinDirection, currNormal)) * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id, miterMode;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nvoid main() {\n\tfloat alpha = 1., distToStart, distToEnd;\n\tfloat cutoff = thickness * .5;\n\n\t//bevel miter\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToStart + 1., 0.), 1.);\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToEnd + 1., 0.), 1.);\n\t\t}\n\t}\n\n\t// round miter\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - startCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - endCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\t}\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * dash;\n}\n"]),attributes:{lineEnd:{buffer:v,divisor:0,stride:8,offset:0},lineTop:{buffer:v,divisor:0,stride:8,offset:4},aColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset},divisor:1},bColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset+4},divisor:1},prevCoord:{buffer:g,stride:8,offset:function(t,e){return 8*e.offset},divisor:1},aCoord:{buffer:g,stride:8,offset:function(t,e){return 8+8*e.offset},divisor:1},bCoord:{buffer:g,stride:8,offset:function(t,e){return 16+8*e.offset},divisor:1},nextCoord:{buffer:g,stride:8,offset:function(t,e){return 24+8*e.offset},divisor:1}}},T)),d=t(a({vert:o(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec2 aCoord, bCoord, aCoordFract, bCoordFract;\nattribute vec4 color;\nattribute float lineEnd, lineTop;\n\nuniform vec2 scale, scaleFract, translate, translateFract, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nconst float MAX_LINES = 256.;\n\nvec2 project(vec2 position, vec2 positionFract, vec2 scale, vec2 scaleFract, vec2 translate, vec2 translateFract) {\n\t// the order is important\n\treturn position * scale + translate\n       + positionFract * scale + translateFract\n       + position * scaleFract\n       + positionFract * scaleFract;\n}\n\nvoid main() {\n\t// vec2 scaleRatio = scale * viewport.zw;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineOffset = lineTop * 2. - 1.;\n\tfloat depth = (MAX_LINES - 1. - id) / (MAX_LINES);\n\n\tvec2 diff = (bCoord + bCoordFract - aCoord - aCoordFract);\n\ttangent = normalize(diff * scaleRatio);\n\tvec2 normal = vec2(-tangent.y, tangent.x);\n\n\tvec2 position = project(aCoord, aCoordFract, scale, scaleFract, translate, translateFract) * lineStart\n\t\t+ project(bCoord, bCoordFract, scale, scaleFract, translate, translateFract) * lineEnd\n\n\t\t+ thickness * normal * .5 * lineOffset / viewport.zw;\n\n\tgl_Position = vec4(position * 2.0 - 1.0, depth, 1);\n\n\tfragColor = color / 255.;\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nvoid main() {\n\tfloat alpha = 1.;\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * 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n.baseCalendar,i(a.prototype,{name:"Mayan",jdEpoch:584282.5,hasYearZero:!0,minMonth:0,firstMonth:0,minDay:0,regionalOptions:{"":{name:"Mayan",epochs:["",""],monthNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],monthNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],dayNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesMin:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],digits:null,dateFormat:"YYYY.m.d",firstDay:0,isRTL:!1,haabMonths:["Pop","Uo","Zip","Zotz","Tzec","Xul","Yaxkin","Mol","Chen","Yax","Zac","Ceh","Mac","Kankin","Muan","Pax","Kayab","Cumku","Uayeb"],tzolkinMonths:["Imix","Ik","Akbal","Kan","Chicchan","Cimi","Manik","Lamat","Muluc","Oc","Chuen","Eb","Ben","Ix","Men","Cib","Caban","Etznab","Cauac","Ahau"]}},leapYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),!1},formatYear:function(t){t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year();var e=Math.floor(t/400);return t%=400,t+=t<0?400:0,e+"."+Math.floor(t/20)+"."+t%20},forYear:function(t){if((t=t.split(".")).length<3)throw"Invalid Mayan year";for(var e=0,r=0;r<t.length;r++){var n=parseInt(t[r],10);if(Math.abs(n)>19||r>0&&n<0)throw"Invalid Mayan year";e=20*e+n}return e},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),18},weekOfYear:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),0},daysInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),360},daysInMonth:function(t,e){return this._validate(t,e,this.minDay,n.local.invalidMonth),20},daysInWeek:function(){return 5},dayOfWeek:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate).day()},weekDay:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),!0},extraInfo:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate).toJD(),a=this._toHaab(i),o=this._toTzolkin(i);return{haabMonthName:this.local.haabMonths[a[0]-1],haabMonth:a[0],haabDay:a[1],tzolkinDayName:this.local.tzolkinMonths[o[0]-1],tzolkinDay:o[0],tzolkinTrecena:o[1]}},_toHaab:function(t){var e=o((t-=this.jdEpoch)+8+340,365);return[Math.floor(e/20)+1,o(e,20)]},_toTzolkin:function(t){return[s((t-=this.jdEpoch)+20,20),s(t+4,13)]},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);return i.day()+20*i.month()+360*i.year()+this.jdEpoch},fromJD:function(t){t=Math.floor(t)+.5-this.jdEpoch;var e=Math.floor(t/360);t%=360,t+=t<0?360:0;var r=Math.floor(t/20),n=t%20;return this.newDate(e,r,n)}}),n.calendars.mayan=a},{"../main":575,"object-assign":443}],569:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new 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n.add(1-(n.dayOfWeek()||7),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInMonth:function(t,e){var r=this._validate(t,e,this.minDay,n.local.invalidMonth);return this.daysPerMonth[r.month()-1]+(12===r.month()&&this.leapYear(r.year())?1:0)},weekDay:function(t,e,r){return(this.dayOfWeek(t,e,r)||7)<6},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidMonth);(t=i.year())<0&&t++;for(var a=i.day(),s=1;s<i.month();s++)a+=this.daysPerMonth[s-1];return a+o.toJD(t+1468,3,13)},fromJD:function(t){t=Math.floor(t+.5);for(var e=Math.floor((t-(this.jdEpoch-1))/366);t>=this.toJD(e+1,1,1);)e++;for(var r=t-Math.floor(this.toJD(e,1,1)+.5)+1,n=1;r>this.daysInMonth(e,n);)r-=this.daysInMonth(e,n),n++;return this.newDate(e,n,r)}}),n.calendars.nanakshahi=a},{"../main":575,"object-assign":443}],570:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new n.baseCalendar,i(a.prototype,{name:"Nepali",jdEpoch:1700709.5,daysPerMonth:[31,31,32,32,31,30,30,29,30,29,30,30],hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,daysPerYear:365,regionalOptions:{"":{name:"Nepali",epochs:["BBS","ABS"],monthNames:["Baisakh","Jestha","Ashadh","Shrawan","Bhadra","Ashwin","Kartik","Mangsir","Paush","Mangh","Falgun","Chaitra"],monthNamesShort:["Bai","Je","As","Shra","Bha","Ash","Kar","Mang","Pau","Ma","Fal","Chai"],dayNames:["Aaitabaar","Sombaar","Manglbaar","Budhabaar","Bihibaar","Shukrabaar","Shanibaar"],dayNamesShort:["Aaita","Som","Mangl","Budha","Bihi","Shukra","Shani"],dayNamesMin:["Aai","So","Man","Bu","Bi","Shu","Sha"],digits:null,dateFormat:"dd/mm/yyyy",firstDay:1,isRTL:!1}},leapYear:function(t){return this.daysInYear(t)!==this.daysPerYear},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){if(t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year(),void 0===this.NEPALI_CALENDAR_DATA[t])return this.daysPerYear;for(var e=0,r=this.minMonth;r<=12;r++)e+=this.NEPALI_CALENDAR_DATA[t][r];return e},daysInMonth:function(t,e){return t.year&&(e=t.month(),t=t.year()),this._validate(t,e,this.minDay,n.local.invalidMonth),void 0===this.NEPALI_CALENDAR_DATA[t]?this.daysPerMonth[e-1]:this.NEPALI_CALENDAR_DATA[t][e]},weekDay:function(t,e,r){return 6!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);t=i.year(),e=i.month(),r=i.day();var a=n.instance(),o=0,s=e,l=t;this._createMissingCalendarData(t);var c=t-(s>9||9===s&&r>=this.NEPALI_CALENDAR_DATA[l][0]?56:57);for(9!==e&&(o=r,s--);9!==s;)s<=0&&(s=12,l--),o+=this.NEPALI_CALENDAR_DATA[l][s],s--;return 9===e?(o+=r-this.NEPALI_CALENDAR_DATA[l][0])<0&&(o+=a.daysInYear(c)):o+=this.NEPALI_CALENDAR_DATA[l][9]-this.NEPALI_CALENDAR_DATA[l][0],a.newDate(c,1,1).add(o,"d").toJD()},fromJD:function(t){var e=n.instance().fromJD(t),r=e.year(),i=e.dayOfYear(),a=r+56;this._createMissingCalendarData(a);for(var o=9,s=this.NEPALI_CALENDAR_DATA[a][0],l=this.NEPALI_CALENDAR_DATA[a][o]-s+1;i>l;)++o>12&&(o=1,a++),l+=this.NEPALI_CALENDAR_DATA[a][o];var c=this.NEPALI_CALENDAR_DATA[a][o]-(l-i);return this.newDate(a,o,c)},_createMissingCalendarData:function(t){var e=this.daysPerMonth.slice(0);e.unshift(17);for(var r=t-1;r<t+2;r++)void 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n.baseCalendar,i(a.prototype,{name:"UmmAlQura",hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,regionalOptions:{"":{name:"Umm al-Qura",epochs:["BH","AH"],monthNames:["Al-Muharram","Safar","Rabi' al-awwal","Rabi' Al-Thani","Jumada Al-Awwal","Jumada Al-Thani","Rajab","Sha'aban","Ramadan","Shawwal","Dhu al-Qi'dah","Dhu al-Hijjah"],monthNamesShort:["Muh","Saf","Rab1","Rab2","Jum1","Jum2","Raj","Sha'","Ram","Shaw","DhuQ","DhuH"],dayNames:["Yawm al-Ahad","Yawm al-Ithnain","Yawm al-Thal\u0101th\u0101\u2019","Yawm al-Arba\u2018\u0101\u2019","Yawm al-Kham\u012bs","Yawm al-Jum\u2018a","Yawm al-Sabt"],dayNamesMin:["Ah","Ith","Th","Ar","Kh","Ju","Sa"],digits:null,dateFormat:"yyyy/mm/dd",firstDay:6,isRTL:!0}},leapYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear);return 355===this.daysInYear(e.year())},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){for(var e=0,r=1;r<=12;r++)e+=this.daysInMonth(t,r);return e},daysInMonth:function(t,e){for(var r=this._validate(t,e,this.minDay,n.local.invalidMonth).toJD()-24e5+.5,i=0,a=0;a<o.length;a++){if(o[a]>r)return o[i]-o[i-1];i++}return 30},weekDay:function(t,e,r){return 5!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate),a=12*(i.year()-1)+i.month()-15292;return i.day()+o[a-1]-1+24e5-.5},fromJD:function(t){for(var e=t-24e5+.5,r=0,n=0;n<o.length&&!(o[n]>e);n++)r++;var i=r+15292,a=Math.floor((i-1)/12),s=a+1,l=i-12*a,c=e-o[r-1]+1;return this.newDate(s,l,c)},isValid:function(t,e,r){var i=n.baseCalendar.prototype.isValid.apply(this,arguments);return i&&(i=(t=null!=t.year?t.year:t)>=1276&&t<=1500),i},_validate:function(t,e,r,i){var a=n.baseCalendar.prototype._validate.apply(this,arguments);if(a.year<1276||a.year>1500)throw i.replace(/\{0\}/,this.local.name);return a}}),n.calendars.ummalqura=a;var 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n=t("object-assign");function i(){this.regionalOptions=[],this.regionalOptions[""]={invalidCalendar:"Calendar {0} not found",invalidDate:"Invalid {0} date",invalidMonth:"Invalid {0} month",invalidYear:"Invalid {0} year",differentCalendars:"Cannot mix {0} and {1} dates"},this.local=this.regionalOptions[""],this.calendars={},this._localCals={}}function a(t,e,r,n){if(this._calendar=t,this._year=e,this._month=r,this._day=n,0===this._calendar._validateLevel&&!this._calendar.isValid(this._year,this._month,this._day))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name)}function o(t,e){return"000000".substring(0,e-(t=""+t).length)+t}function s(){this.shortYearCutoff="+10"}function l(t){this.local=this.regionalOptions[t]||this.regionalOptions[""]}n(i.prototype,{instance:function(t,e){t=(t||"gregorian").toLowerCase(),e=e||"";var r=this._localCals[t+"-"+e];if(!r&&this.calendars[t]&&(r=new this.calendars[t](e),this._localCals[t+"-"+e]=r),!r)throw(this.local.invalidCalendar||this.regionalOptions[""].invalidCalendar).replace(/\{0\}/,t);return r},newDate:function(t,e,r,n,i){return(n=(null!=t&&t.year?t.calendar():"string"==typeof n?this.instance(n,i):n)||this.instance()).newDate(t,e,r)},substituteDigits:function(t){return function(e){return(e+"").replace(/[0-9]/g,function(e){return t[e]})}},substituteChineseDigits:function(t,e){return function(r){for(var n="",i=0;r>0;){var a=r%10;n=(0===a?"":t[a]+e[i])+n,i++,r=Math.floor(r/10)}return 0===n.indexOf(t[1]+e[1])&&(n=n.substr(1)),n||t[0]}}}),n(a.prototype,{newDate:function(t,e,r){return this._calendar.newDate(null==t?this:t,e,r)},year:function(t){return 0===arguments.length?this._year:this.set(t,"y")},month:function(t){return 0===arguments.length?this._month:this.set(t,"m")},day:function(t){return 0===arguments.length?this._day:this.set(t,"d")},date:function(t,e,r){if(!this._calendar.isValid(t,e,r))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name);return this._year=t,this._month=e,this._day=r,this},leapYear:function(){return this._calendar.leapYear(this)},epoch:function(){return this._calendar.epoch(this)},formatYear:function(){return this._calendar.formatYear(this)},monthOfYear:function(){return this._calendar.monthOfYear(this)},weekOfYear:function(){return this._calendar.weekOfYear(this)},daysInYear:function(){return this._calendar.daysInYear(this)},dayOfYear:function(){return this._calendar.dayOfYear(this)},daysInMonth:function(){return this._calendar.daysInMonth(this)},dayOfWeek:function(){return this._calendar.dayOfWeek(this)},weekDay:function(){return this._calendar.weekDay(this)},extraInfo:function(){return this._calendar.extraInfo(this)},add:function(t,e){return this._calendar.add(this,t,e)},set:function(t,e){return this._calendar.set(this,t,e)},compareTo:function(t){if(this._calendar.name!==t._calendar.name)throw(c.local.differentCalendars||c.regionalOptions[""].differentCalendars).replace(/\{0\}/,this._calendar.local.name).replace(/\{1\}/,t._calendar.local.name);var e=this._year!==t._year?this._year-t._year:this._month!==t._month?this.monthOfYear()-t.monthOfYear():this._day-t._day;return 0===e?0:e<0?-1:1},calendar:function(){return this._calendar},toJD:function(){return this._calendar.toJD(this)},fromJD:function(t){return this._calendar.fromJD(t)},toJSDate:function(){return this._calendar.toJSDate(this)},fromJSDate:function(t){return this._calendar.fromJSDate(t)},toString:function(){return(this.year()<0?"-":"")+o(Math.abs(this.year()),4)+"-"+o(this.month(),2)+"-"+o(this.day(),2)}}),n(s.prototype,{_validateLevel:0,newDate:function(t,e,r){return null==t?this.today():(t.year&&(this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),r=t.day(),e=t.month(),t=t.year()),new a(this,t,e,r))},today:function(){return this.fromJSDate(new Date)},epoch:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear).year()<0?this.local.epochs[0]:this.local.epochs[1]},formatYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return(e.year()<0?"-":"")+o(Math.abs(e.year()),4)},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear),12},monthOfYear:function(t,e){var r=this._validate(t,e,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth);return(r.month()+this.monthsInYear(r)-this.firstMonth)%this.monthsInYear(r)+this.minMonth},fromMonthOfYear:function(t,e){var r=(e+this.firstMonth-2*this.minMonth)%this.monthsInYear(t)+this.minMonth;return this._validate(t,r,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth),r},daysInYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return this.leapYear(e)?366:365},dayOfYear:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return n.toJD()-this.newDate(n.year(),this.fromMonthOfYear(n.year(),this.minMonth),this.minDay).toJD()+1},daysInWeek:function(){return 7},dayOfWeek:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return(Math.floor(this.toJD(n))+2)%this.daysInWeek()},extraInfo:function(t,e,r){return this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),{}},add:function(t,e,r){return this._validate(t,this.minMonth,this.minDay,c.local.invalidDate||c.regionalOptions[""].invalidDate),this._correctAdd(t,this._add(t,e,r),e,r)},_add:function(t,e,r){if(this._validateLevel++,"d"===r||"w"===r){var n=t.toJD()+e*("w"===r?this.daysInWeek():1),i=t.calendar().fromJD(n);return this._validateLevel--,[i.year(),i.month(),i.day()]}try{var a=t.year()+("y"===r?e:0),o=t.monthOfYear()+("m"===r?e:0);i=t.day();"y"===r?(t.month()!==this.fromMonthOfYear(a,o)&&(o=this.newDate(a,t.month(),this.minDay).monthOfYear()),o=Math.min(o,this.monthsInYear(a)),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o)))):"m"===r&&(!function(t){for(;o<t.minMonth;)a--,o+=t.monthsInYear(a);for(var e=t.monthsInYear(a);o>e-1+t.minMonth;)a++,o-=e,e=t.monthsInYear(a)}(this),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o))));var s=[a,this.fromMonthOfYear(a,o),i];return this._validateLevel--,s}catch(t){throw 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r,n,a,o,s=i.getFromId(t,e.xref),l=i.getFromId(t,e.yref),c=3*e.arrowsize*e.arrowwidth||0,u=3*e.startarrowsize*e.arrowwidth||0;s&&s.autorange&&(r=c+e.xshift,n=c-e.xshift,a=u+e.xshift,o=u-e.xshift,e.axref===e.xref?(i.expand(s,[s.r2c(e.x)],{ppadplus:r,ppadminus:n}),i.expand(s,[s.r2c(e.ax)],{ppadplus:Math.max(e._xpadplus,a),ppadminus:Math.max(e._xpadminus,o)})):(a=e.ax?a+e.ax:a,o=e.ax?o-e.ax:o,i.expand(s,[s.r2c(e.x)],{ppadplus:Math.max(e._xpadplus,r,a),ppadminus:Math.max(e._xpadminus,n,o)}))),l&&l.autorange&&(r=c-e.yshift,n=c+e.yshift,a=u-e.yshift,o=u+e.yshift,e.ayref===e.yref?(i.expand(l,[l.r2c(e.y)],{ppadplus:r,ppadminus:n}),i.expand(l,[l.r2c(e.ay)],{ppadplus:Math.max(e._ypadplus,a),ppadminus:Math.max(e._ypadminus,o)})):(a=e.ay?a+e.ay:a,o=e.ay?o-e.ay:o,i.expand(l,[l.r2c(e.y)],{ppadplus:Math.max(e._ypadplus,r,a),ppadminus:Math.max(e._ypadminus,n,o)})))})}e.exports=function(t){var e=t._fullLayout,r=n.filterVisible(e.annotations);if(r.length&&t._fullData.length){var s={};for(var l in r.forEach(function(t){s[t.xref]=1,s[t.yref]=1}),s){var c=i.getFromId(t,l);if(c&&c.autorange)return n.syncOrAsync([a,o],t)}}}},{"../../lib":724,"../../plots/cartesian/axes":770,"./draw":587}],583:[function(t,e,r){"use strict";var n=t("../../plotly");function i(t,e){var r,n,i,o,s,l,c,u=t._fullLayout.annotations,f=[],h=[],d=[],p=(e||[]).length;for(r=0;r<u.length;r++)if(o=(i=u[r]).clicktoshow){for(n=0;n<p;n++)if(l=(s=e[n]).xaxis,c=s.yaxis,l._id===i.xref&&c._id===i.yref&&l.d2r(s.x)===a(i._xclick,l)&&c.d2r(s.y)===a(i._yclick,c)){(i.visible?"onout"===o?h:d:f).push(r);break}n===p&&i.visible&&"onout"===o&&h.push(r)}return{on:f,off:h,explicitOff:d}}function a(t,e){return"log"===e.type?e.l2r(t):e.d2r(t)}e.exports={hasClickToShow:function(t,e){var r=i(t,e);return r.on.length>0||r.explicitOff.length>0},onClick:function(t,e){var r,a=i(t,e),o=a.on,s=a.off.concat(a.explicitOff),l={};if(!o.length&&!s.length)return;for(r=0;r<o.length;r++)l["annotations["+o[r]+"].visible"]=!0;for(r=0;r<s.length;r++)l["annotations["+s[r]+"].visible"]=!1;return n.update(t,{},l)}}},{"../../plotly":765}],584:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../color");e.exports=function(t,e,r,a){a("opacity");var o=a("bgcolor"),s=a("bordercolor"),l=i.opacity(s);a("borderpad");var c=a("borderwidth"),u=a("showarrow");if(a("text",u?" ":r._dfltTitle.annotation),a("textangle"),n.coerceFont(a,"font",r.font),a("width"),a("align"),a("height")&&a("valign"),u){var f,h,d=a("arrowside");-1!==d.indexOf("end")&&(f=a("arrowhead"),h=a("arrowsize")),-1!==d.indexOf("start")&&(a("startarrowhead",f),a("startarrowsize",h)),a("arrowcolor",l?e.bordercolor:i.defaultLine),a("arrowwidth",2*(l&&c||1)),a("standoff"),a("startstandoff")}var p=a("hovertext"),m=r.hoverlabel||{};if(p){var v=a("hoverlabel.bgcolor",m.bgcolor||(i.opacity(o)?i.rgb(o):i.defaultLine)),g=a("hoverlabel.bordercolor",m.bordercolor||i.contrast(v));n.coerceFont(a,"hoverlabel.font",{family:m.font.family,size:m.font.size,color:m.font.color||g})}a("captureevents",!!p)}},{"../../lib":724,"../color":598}],585:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib/to_log_range");e.exports=function(t,e,r,a){e=e||{};var o="log"===r&&"linear"===e.type,s="linear"===r&&"log"===e.type;if(o||s)for(var l,c,u=t._fullLayout.annotations,f=e._id.charAt(0),h=0;h<u.length;h++)l=u[h],c="annotations["+h+"].",l[f+"ref"]===e._id&&d(f),l["a"+f+"ref"]===e._id&&d("a"+f);function d(t){var r=l[t],s=null;s=o?i(r,e.range):Math.pow(10,r),n(s)||(s=null),a(c+t,s)}}},{"../../lib/to_log_range":749,"fast-isnumeric":140}],586:[function(t,e,r){"use strict";var n=t("../../plots/array_container_defaults"),i=t("./annotation_defaults");e.exports=function(t,e){n(t,e,{name:"annotations",handleItemDefaults:i})}},{"../../plots/array_container_defaults":767,"./annotation_defaults":579}],587:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../plotly"),a=t("../../plots/plots"),o=t("../../lib"),s=t("../../plots/cartesian/axes"),l=t("../color"),c=t("../drawing"),u=t("../fx"),f=t("../../lib/svg_text_utils"),h=t("../../lib/setcursor"),d=t("../dragelement"),p=t("./draw_arrow_head");function m(t,e){var r=t._fullLayout.annotations[e]||{};v(t,r,e,!1,s.getFromId(t,r.xref),s.getFromId(t,r.yref))}function v(t,e,r,a,s,m){var v,g,y=t._fullLayout,b=t._fullLayout._size,x=t._context.edits;a?(v="annotation-"+a,g=a+".annotations["+r+"]"):(v="annotation",g="annotations["+r+"]"),y._infolayer.selectAll("."+v+'[data-index="'+r+'"]').remove();var _="clip"+y._uid+"_ann"+r;if(e._input&&!1!==e.visible){var w={x:{},y:{}},M=+e.textangle||0,k=y._infolayer.append("g").classed(v,!0).attr("data-index",String(r)).style("opacity",e.opacity),A=k.append("g").classed("annotation-text-g",!0),T=x[e.showarrow?"annotationTail":"annotationPosition"],E=e.captureevents||x.annotationText||T,S=A.append("g").style("pointer-events",E?"all":null).call(h,"default").on("click",function(){t._dragging=!1;var i={index:r,annotation:e._input,fullAnnotation:e,event:n.event};a&&(i.subplotId=a),t.emit("plotly_clickannotation",i)});e.hovertext&&S.on("mouseover",function(){var r=e.hoverlabel,n=r.font,i=this.getBoundingClientRect(),a=t.getBoundingClientRect();u.loneHover({x0:i.left-a.left,x1:i.right-a.left,y:(i.top+i.bottom)/2-a.top,text:e.hovertext,color:r.bgcolor,borderColor:r.bordercolor,fontFamily:n.family,fontSize:n.size,fontColor:n.color},{container:y._hoverlayer.node(),outerContainer:y._paper.node(),gd:t})}).on("mouseout",function(){u.loneUnhover(y._hoverlayer.node())});var L=e.borderwidth,C=e.borderpad,P=L+C,z=S.append("rect").attr("class","bg").style("stroke-width",L+"px").call(l.stroke,e.bordercolor).call(l.fill,e.bgcolor),O=e.width||e.height,D=y._topclips.selectAll("#"+_).data(O?[0]:[]);D.enter().append("clipPath").classed("annclip",!0).attr("id",_).append("rect"),D.exit().remove();var I=e.font,R=S.append("text").classed("annotation-text",!0).text(e.text);x.annotationText?R.call(f.makeEditable,{delegate:S,gd:t}).call(N).on("edit",function(r){e.text=r,this.call(N);var n={};n[g+".text"]=e.text,s&&s.autorange&&(n[s._name+".autorange"]=!0),m&&m.autorange&&(n[m._name+".autorange"]=!0),i.relayout(t,n)}):R.call(N)}else n.selectAll("#"+_).remove();function N(r){return r.call(c.font,I).attr({"text-anchor":{left:"start",right:"end"}[e.align]||"middle"}),f.convertToTspans(r,t,F),r}function F(){var r=R.selectAll("a");1===r.size()&&r.text()===R.text()&&S.insert("a",":first-child").attr({"xlink:xlink:href":r.attr("xlink:href"),"xlink:xlink:show":r.attr("xlink:show")}).style({cursor:"pointer"}).node().appendChild(z.node());var n=S.select(".annotation-text-math-group"),u=!n.empty(),v=c.bBox((u?n:R).node()),E=v.width,C=v.height,I=e.width||E,N=e.height||C,F=Math.round(I+2*P),j=Math.round(N+2*P);function B(t,e){return"auto"===e&&(e=t<1/3?"left":t>2/3?"right":"center"),{center:0,middle:0,left:.5,bottom:-.5,right:-.5,top:.5}[e]}e._w=I,e._h=N;for(var U=!1,V=["x","y"],q=0;q<V.length;q++){var H,G,Y,W,X,Z=V[q],J=e[Z+"ref"]||Z,K=e["a"+Z+"ref"],Q={x:s,y:m}[Z],$=(M+("x"===Z?0:-90))*Math.PI/180,tt=F*Math.cos($),et=j*Math.sin($),rt=Math.abs(tt)+Math.abs(et),nt=e[Z+"anchor"],it=e[Z+"shift"]*("x"===Z?1:-1),at=w[Z];if(Q){var ot=Q.r2fraction(e[Z]);if((t._dragging||!Q.autorange)&&(ot<0||ot>1)&&(K===J?((ot=Q.r2fraction(e["a"+Z]))<0||ot>1)&&(U=!0):U=!0,U))continue;H=Q._offset+Q.r2p(e[Z]),W=.5}else"x"===Z?(Y=e[Z],H=b.l+b.w*Y):(Y=1-e[Z],H=b.t+b.h*Y),W=e.showarrow?.5:Y;if(e.showarrow){at.head=H;var st=e["a"+Z];X=tt*B(.5,e.xanchor)-et*B(.5,e.yanchor),K===J?(at.tail=Q._offset+Q.r2p(st),G=X):(at.tail=H+st,G=X+st),at.text=at.tail+X;var lt=y["x"===Z?"width":"height"];if("paper"===J&&(at.head=o.constrain(at.head,1,lt-1)),"pixel"===K){var ct=-Math.max(at.tail-3,at.text),ut=Math.min(at.tail+3,at.text)-lt;ct>0?(at.tail+=ct,at.text+=ct):ut>0&&(at.tail-=ut,at.text-=ut)}at.tail+=it,at.head+=it}else G=X=rt*B(W,nt),at.text=H+X;at.text+=it,X+=it,G+=it,e["_"+Z+"padplus"]=rt/2+G,e["_"+Z+"padminus"]=rt/2-G,e["_"+Z+"size"]=rt,e["_"+Z+"shift"]=X}if(U)S.remove();else{var ft=0,ht=0;if("left"!==e.align&&(ft=(I-E)*("center"===e.align?.5:1)),"top"!==e.valign&&(ht=(N-C)*("middle"===e.valign?.5:1)),u)n.select("svg").attr({x:P+ft-1,y:P+ht}).call(c.setClipUrl,O?_:null);else{var dt=P+ht-v.top,pt=P+ft-v.left;R.call(f.positionText,pt,dt).call(c.setClipUrl,O?_:null)}D.select("rect").call(c.setRect,P,P,I,N),z.call(c.setRect,L/2,L/2,F-L,j-L),S.call(c.setTranslate,Math.round(w.x.text-F/2),Math.round(w.y.text-j/2)),A.attr({transform:"rotate("+M+","+w.x.text+","+w.y.text+")"});var mt,vt,gt=function(r,n){k.selectAll(".annotation-arrow-g").remove();var u=w.x.head,f=w.y.head,h=w.x.tail+r,v=w.y.tail+n,y=w.x.text+r,_=w.y.text+n,T=o.rotationXYMatrix(M,y,_),E=o.apply2DTransform(T),L=o.apply2DTransform2(T),C=+z.attr("width"),P=+z.attr("height"),O=y-.5*C,D=O+C,I=_-.5*P,R=I+P,N=[[O,I,O,R],[O,R,D,R],[D,R,D,I],[D,I,O,I]].map(L);if(!N.reduce(function(t,e){return t^!!o.segmentsIntersect(u,f,u+1e6,f+1e6,e[0],e[1],e[2],e[3])},!1)){N.forEach(function(t){var e=o.segmentsIntersect(h,v,u,f,t[0],t[1],t[2],t[3]);e&&(h=e.x,v=e.y)});var F=e.arrowwidth,j=e.arrowcolor,B=e.arrowside,U=k.append("g").style({opacity:l.opacity(j)}).classed("annotation-arrow-g",!0),V=U.append("path").attr("d","M"+h+","+v+"L"+u+","+f).style("stroke-width",F+"px").call(l.stroke,l.rgb(j));if(p(V,B,e),x.annotationPosition&&V.node().parentNode&&!a){var q=u,H=f;if(e.standoff){var G=Math.sqrt(Math.pow(u-h,2)+Math.pow(f-v,2));q+=e.standoff*(h-u)/G,H+=e.standoff*(v-f)/G}var Y,W,X,Z=U.append("path").classed("annotation-arrow",!0).classed("anndrag",!0).attr({d:"M3,3H-3V-3H3ZM0,0L"+(h-q)+","+(v-H),transform:"translate("+q+","+H+")"}).style("stroke-width",F+6+"px").call(l.stroke,"rgba(0,0,0,0)").call(l.fill,"rgba(0,0,0,0)");d.init({element:Z.node(),gd:t,prepFn:function(){var t=c.getTranslate(S);W=t.x,X=t.y,Y={},s&&s.autorange&&(Y[s._name+".autorange"]=!0),m&&m.autorange&&(Y[m._name+".autorange"]=!0)},moveFn:function(t,r){var n=E(W,X),i=n[0]+t,a=n[1]+r;S.call(c.setTranslate,i,a),Y[g+".x"]=s?s.p2r(s.r2p(e.x)+t):e.x+t/b.w,Y[g+".y"]=m?m.p2r(m.r2p(e.y)+r):e.y-r/b.h,e.axref===e.xref&&(Y[g+".ax"]=s.p2r(s.r2p(e.ax)+t)),e.ayref===e.yref&&(Y[g+".ay"]=m.p2r(m.r2p(e.ay)+r)),U.attr("transform","translate("+t+","+r+")"),A.attr({transform:"rotate("+M+","+i+","+a+")"})},doneFn:function(){i.relayout(t,Y);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}};if(e.showarrow&&gt(0,0),T)d.init({element:S.node(),gd:t,prepFn:function(){vt=A.attr("transform"),mt={}},moveFn:function(t,r){var n="pointer";if(e.showarrow)e.axref===e.xref?mt[g+".ax"]=s.p2r(s.r2p(e.ax)+t):mt[g+".ax"]=e.ax+t,e.ayref===e.yref?mt[g+".ay"]=m.p2r(m.r2p(e.ay)+r):mt[g+".ay"]=e.ay+r,gt(t,r);else{if(a)return;if(s)mt[g+".x"]=e.x+t/s._m;else{var i=e._xsize/b.w,o=e.x+(e._xshift-e.xshift)/b.w-i/2;mt[g+".x"]=d.align(o+t/b.w,i,0,1,e.xanchor)}if(m)mt[g+".y"]=e.y+r/m._m;else{var l=e._ysize/b.h,c=e.y-(e._yshift+e.yshift)/b.h-l/2;mt[g+".y"]=d.align(c-r/b.h,l,0,1,e.yanchor)}s&&m||(n=d.getCursor(s?.5:mt[g+".x"],m?.5:mt[g+".y"],e.xanchor,e.yanchor))}A.attr({transform:"translate("+t+","+r+")"+vt}),h(S,n)},doneFn:function(){h(S),i.relayout(t,mt);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}}e.exports={draw:function(t){var e=t._fullLayout;e._infolayer.selectAll(".annotation").remove();for(var r=0;r<e.annotations.length;r++)e.annotations[r].visible&&m(t,r);return a.previousPromises(t)},drawOne:m,drawRaw:v}},{"../../lib":724,"../../lib/setcursor":743,"../../lib/svg_text_utils":747,"../../plotly":765,"../../plots/cartesian/axes":770,"../../plots/plots":833,"../color":598,"../dragelement":620,"../drawing":623,"../fx":640,"./draw_arrow_head":588,d3:128}],588:[function(t,e,r){"use strict";var n=t("d3"),i=t("../color"),a=t("./arrow_paths");e.exports=function(t,e,r){var o,s,l,c,u=t.node(),f=a[r.arrowhead||0],h=a[r.startarrowhead||0],d=(r.arrowwidth||1)*(r.arrowsize||1),p=(r.arrowwidth||1)*(r.startarrowsize||1),m=e.indexOf("start")>=0,v=e.indexOf("end")>=0,g=f.backoff*d+r.standoff,y=h.backoff*p+r.startstandoff;if("line"===u.nodeName){o={x:+t.attr("x1"),y:+t.attr("y1")},s={x:+t.attr("x2"),y:+t.attr("y2")};var b=o.x-s.x,x=o.y-s.y;if(c=(l=Math.atan2(x,b))+Math.PI,g&&y&&g+y>Math.sqrt(b*b+x*x))return void 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mt={fullLayout:u,container:u._hoverlayer,outerContainer:u._paperdiv,event:e},vt=t._spikepoints,gt={vLinePoint:K.vLinePoint,hLinePoint:K.hLinePoint};if(t._spikepoints=gt,u._has("cartesian")&&0!==X&&0!==Z.length){var yt=Z.filter(function(t){return t.ya.showspikes}),bt=dt(yt,X);K.hLinePoint=pt(bt);var xt=Z.filter(function(t){return t.xa.showspikes}),_t=dt(xt,X);K.vLinePoint=pt(_t)}if(0===Z.length){var wt=h.unhoverRaw(t,e);return!u._has("cartesian")||null===K.hLinePoint&&null===K.vLinePoint||S(vt)&&E(K,mt),wt}u._has("cartesian")&&S(vt)&&E(K,mt);Z.sort(function(t,e){return t.distance-e.distance});var Mt=t._hoverdata,kt=[];for(R=0;R<Z.length;R++){var At=Z[R];kt.push(m.makeEventData(At,At.trace,At.cd))}t._hoverdata=kt;var Tt="y"===O&&J.length>1,Et=f.combine(u.plot_bgcolor||f.background,u.paper_bgcolor),St={hovermode:O,rotateLabels:Tt,bgColor:Et,container:u._hoverlayer,outerContainer:u._paperdiv,commonLabelOpts:u.hoverlabel,hoverdistance:u.hoverdistance},Lt=k(Z,St,t);if(function(t,e,r){var n,i,a,o,s,l,c,u=0,f=t.map(function(t,n){var i=t[e];return[{i:n,dp:0,pos:t.pos,posref:t.posref,size:t.by*("x"===i._id.charAt(0)?b:1)/2,pmin:0,pmax:"x"===i._id.charAt(0)?r.width:r.height}]}).sort(function(t,e){return t[0].posref-e[0].posref});function h(t){var e=t[0],r=t[t.length-1];if(i=e.pmin-e.pos-e.dp+e.size,a=r.pos+r.dp+r.size-e.pmax,i>.01){for(s=t.length-1;s>=0;s--)t[s].dp+=i;n=!1}if(!(a<.01)){if(i<-.01){for(s=t.length-1;s>=0;s--)t[s].dp-=a;n=!1}if(n){var c=0;for(o=0;o<t.length;o++)(l=t[o]).pos+l.dp+l.size>e.pmax&&c++;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos>e.pmax-1&&(l.del=!0,c--);for(o=0;o<t.length&&!(c<=0);o++)if((l=t[o]).pos<e.pmin+1)for(l.del=!0,c--,a=2*l.size,s=t.length-1;s>=0;s--)t[s].dp-=a;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos+l.dp+l.size>e.pmax&&(l.del=!0,c--)}}}for(;!n&&u<=t.length;){for(u++,n=!0,o=0;o<f.length-1;){var 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i=r[n],a=t._hoverdata[n];if(i.curveNumber!==a.curveNumber||String(i.pointNumber)!==String(a.pointNumber))return!0}return!1}(t,0,Mt))return;Mt&&t.emit("plotly_unhover",{event:e,points:Mt});t.emit("plotly_hover",{event:e,points:t._hoverdata,xaxes:_,yaxes:w,xvals:D,yvals:I})}(t,e,r,a)})},r.loneHover=function(t,e){var r={color:t.color||f.defaultLine,x0:t.x0||t.x||0,x1:t.x1||t.x||0,y0:t.y0||t.y||0,y1:t.y1||t.y||0,xLabel:t.xLabel,yLabel:t.yLabel,zLabel:t.zLabel,text:t.text,name:t.name,idealAlign:t.idealAlign,borderColor:t.borderColor,fontFamily:t.fontFamily,fontSize:t.fontSize,fontColor:t.fontColor,trace:{index:0,hoverinfo:""},xa:{_offset:0},ya:{_offset:0},index:0},i=n.select(e.container),a=e.outerContainer?n.select(e.outerContainer):i,o={hovermode:"closest",rotateLabels:!1,bgColor:e.bgColor||f.background,container:i,outerContainer:a,hoverdistance:v.MAXDIST},s=k([r],o,e.gd);return A(s,o.rotateLabels),s.node()}},{"../../lib":724,"../../lib/events":712,"../../lib/override_cursor":735,"../../lib/svg_text_utils":747,"../../plots/cartesian/axes":770,"../../registry":854,"../color":598,"../dragelement":620,"../drawing":623,"./constants":635,"./helpers":637,d3:128,"fast-isnumeric":140,tinycolor2:526}],639:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e,r,i){r("hoverlabel.bgcolor",(i=i||{}).bgcolor),r("hoverlabel.bordercolor",i.bordercolor),r("hoverlabel.namelength",i.namelength),n.coerceFont(r,"hoverlabel.font",i.font)}},{"../../lib":724}],640:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../dragelement"),o=t("./helpers"),s=t("./layout_attributes");e.exports={moduleType:"component",name:"fx",constants:t("./constants"),schema:{layout:s},attributes:t("./attributes"),layoutAttributes:s,supplyLayoutGlobalDefaults:t("./layout_global_defaults"),supplyDefaults:t("./defaults"),supplyLayoutDefaults:t("./layout_defaults"),calc:t("./calc"),getDistanceFunction:o.getDistanceFunction,getClosest:o.getClosest,inbox:o.inbox,quadrature:o.quadrature,appendArrayPointValue:o.appendArrayPointValue,castHoverOption:function(t,e,r){return i.castOption(t,e,"hoverlabel."+r)},castHoverinfo:function(t,e,r){return i.castOption(t,r,"hoverinfo",function(r){return i.coerceHoverinfo({hoverinfo:r},{_module:t._module},e)})},hover:t("./hover").hover,unhover:a.unhover,loneHover:t("./hover").loneHover,loneUnhover:function(t){var e=i.isD3Selection(t)?t:n.select(t);e.selectAll("g.hovertext").remove(),e.selectAll(".spikeline").remove()},click:t("./click")}},{"../../lib":724,"../dragelement":620,"./attributes":632,"./calc":633,"./click":634,"./constants":635,"./defaults":636,"./helpers":637,"./hover":638,"./layout_attributes":641,"./layout_defaults":642,"./layout_global_defaults":643,d3:128}],641:[function(t,e,r){"use strict";var n=t("./constants"),i=t("../../plots/font_attributes")({editType:"none"});i.family.dflt=n.HOVERFONT,i.size.dflt=n.HOVERFONTSIZE,e.exports={dragmode:{valType:"enumerated",values:["zoom","pan","select","lasso","orbit","turntable"],dflt:"zoom",editType:"modebar"},hovermode:{valType:"enumerated",values:["x","y","closest",!1],editType:"modebar"},hoverdistance:{valType:"integer",min:-1,dflt:20,editType:"none"},spikedistance:{valType:"integer",min:-1,dflt:20,editType:"none"},hoverlabel:{bgcolor:{valType:"color",editType:"none"},bordercolor:{valType:"color",editType:"none"},font:i,namelength:{valType:"integer",min:-1,dflt:15,editType:"none"},editType:"none"}}},{"../../plots/font_attributes":797,"./constants":635}],642:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}var o;a("dragmode"),e._has("cartesian")?(e._isHoriz=function(t){for(var e=!0,r=0;r<t.length;r++){var 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p=a.selectAll("rect."+d.grabAreaMaxClassName).data([0]);p.enter().append("rect").classed(d.grabAreaMaxClassName,!0).attr(f),p.attr("height",n._height)}}e.exports=function(t){var e=t._fullLayout,r=function(t){var e=u.list({_fullLayout:t},"x",!0),r=d.name,n=[];if(t._has("gl2d"))return n;for(var i=0;i<e.length;i++){var a=e[i];a[r]&&a[r].visible&&n.push(a)}return n}(e);var s=e._infolayer.selectAll("g."+d.containerClassName).data(r,function(t){return t._name});s.enter().append("g").classed(d.containerClassName,!0).attr("pointer-events","all"),s.exit().each(function(t){var r=n.select(this),i=t[d.name];r.remove(),e._topdefs.select("#"+i._clipId).remove()}),s.exit().size()&&function(t){for(var e=t._fullLayout._pushmargin||{},r=Object.keys(e),n=0;n<r.length;n++){var i=r[n];-1!==i.indexOf(d.name)&&a.autoMargin(t,i)}}(t),0!==r.length&&s.each(function(r){var s=n.select(this),l=r[d.name],c=e[u.id2name(r.anchor)];if(l.range){var x=l.range,_=r.range;x[0]=r.l2r(Math.min(r.r2l(x[0]),r.r2l(_[0]))),x[1]=r.l2r(Math.max(r.r2l(x[1]),r.r2l(_[1]))),l._input.range=x.slice()}r.cleanRange("rangeslider.range");var w=e.margin,M=e._size,k=r.domain,A=c.domain,T=(r._boundingBox||{}).height||0;l._id=d.name+r._id,l._clipId=l._id+"-"+e._uid,l._width=M.w*(k[1]-k[0]),l._height=(e.height-w.b-w.t)*l.thickness,l._offsetShift=Math.floor(l.borderwidth/2);var E=Math.round(w.l+M.w*k[0]),S=Math.round(w.t+M.h*(1-A[0])+T+l._offsetShift+d.extraPad);s.attr("transform","translate("+E+","+S+")");var L=r.r2l(l.range[0]),C=r.r2l(l.range[1]),P=C-L;l.p2d=function(t){return t/l._width*P+L},l.d2p=function(t){return(t-L)/P*l._width},l._rl=[L,C],s.call(p,t,r,l).call(m,t,r,l).call(v,t,r,l).call(g,t,r,l).call(y,t,r,l).call(b,t,r,l),function(t,e,r,a){var s=t.select("rect."+d.slideBoxClassName).node(),l=t.select("rect."+d.grabAreaMinClassName).node(),c=t.select("rect."+d.grabAreaMaxClassName).node();t.on("mousedown",function(){var u=n.event,d=u.target,p=u.clientX,m=p-t.node().getBoundingClientRect().left,v=a.d2p(r._rl[0]),g=a.d2p(r._rl[1]),y=f.coverSlip();function b(t){var u,f,b,x=+t.clientX-p;switch(d){case s:b="ew-resize",u=v+x,f=g+x;break;case l:b="col-resize",u=v+x,f=g;break;case c:b="col-resize",u=v,f=g+x;break;default:b="ew-resize",u=m,f=m+x}if(f<u){var _=f;f=u,u=_}a._pixelMin=u,a._pixelMax=f,h(n.select(y),b),function(t,e,r,n){function a(t){return r.l2r(o.constrain(t,n._rl[0],n._rl[1]))}var s=a(n.p2d(n._pixelMin)),l=a(n.p2d(n._pixelMax));window.requestAnimationFrame(function(){i.relayout(e,r._name+".range",[s,l])})}(0,e,r,a)}y.addEventListener("mousemove",b),y.addEventListener("mouseup",function t(){y.removeEventListener("mousemove",b);y.removeEventListener("mouseup",t);o.removeElement(y)})})}(s,t,r,l),function(t,e,r,n){var i=d.handleWidth/2;function a(t){return o.constrain(t,0,n._width)}function s(t){return o.constrain(t,-i,n._width+i)}var 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n=t("../annotations/attributes"),i=t("../../traces/scatter/attributes").line,a=t("../drawing/attributes").dash,o=t("../../lib/extend").extendFlat;e.exports={_isLinkedToArray:"shape",visible:{valType:"boolean",dflt:!0,editType:"calcIfAutorange+arraydraw"},type:{valType:"enumerated",values:["circle","rect","path","line"],editType:"calcIfAutorange+arraydraw"},layer:{valType:"enumerated",values:["below","above"],dflt:"above",editType:"arraydraw"},xref:o({},n.xref,{}),x0:{valType:"any",editType:"calcIfAutorange+arraydraw"},x1:{valType:"any",editType:"calcIfAutorange+arraydraw"},yref:o({},n.yref,{}),y0:{valType:"any",editType:"calcIfAutorange+arraydraw"},y1:{valType:"any",editType:"calcIfAutorange+arraydraw"},path:{valType:"string",editType:"calcIfAutorange+arraydraw"},opacity:{valType:"number",min:0,max:1,dflt:1,editType:"arraydraw"},line:{color:o({},i.color,{editType:"arraydraw"}),width:o({},i.width,{editType:"calcIfAutorange+arraydraw"}),dash:o({},a,{editType:"arraydraw"}),editType:"calcIfAutorange+arraydraw"},fillcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"arraydraw"},editType:"arraydraw"}},{"../../lib/extend":713,"../../traces/scatter/attributes":1048,"../annotations/attributes":581,"../drawing/attributes":622}],677:[function(t,e,r){"use 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o,s,u,h,m,v,g,y,b,x,_,w,M,k,A,T,E,S,L,C,P,z,O,D,I,R,N,F,j,B,U=10,V=10,q={element:e.node(),gd:t,prepFn:function(e){D=a.getFromId(t,r.xref),I=a.getFromId(t,r.yref),R=f.getDataToPixel(t,D),N=f.getDataToPixel(t,I,!0),F=f.getPixelToData(t,D),j=f.getPixelToData(t,I,!0);var n="shapes["+i+"]";"path"===r.type?(z=r.path,O=n+".path"):(s=R(r.x0),u=N(r.y0),h=R(r.x1),m=N(r.y1),v=n+".x0",g=n+".y0",y=n+".x1",b=n+".y1");s<h?(w=s,T=n+".x0",C="x0",M=h,E=n+".x1",P="x1"):(w=h,T=n+".x1",C="x1",M=s,E=n+".x0",P="x0");u<m?(x=u,k=n+".y0",S="y0",_=m,A=n+".y1",L="y1"):(x=m,k=n+".y1",S="y1",_=u,A=n+".y0",L="y0");o={},G(e),q.moveFn="move"===B?Y:W},doneFn:function(){c(e),n.relayout(t,o)}},H=q.element.getBoundingClientRect();function G(t){var r=H.right-H.left,n=H.bottom-H.top,i=t.clientX-H.left,a=t.clientY-H.top,o=r>U&&n>V&&!t.shiftKey?l.getCursor(i/r,1-a/n):"move";c(e,o),B=o.split("-")[0]}function Y(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var l=function(t){return j(N(t)+i)};I&&"date"===I.type&&(l=f.encodeDate(l)),r.path=p(z,a,l),o[O]=r.path}else o[v]=r.x0=F(s+n),o[g]=r.y0=j(u+i),o[y]=r.x1=F(h+n),o[b]=r.y1=j(m+i);e.attr("d",d(t,r))}function W(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var s=function(t){return j(N(t)+i)};I&&"date"===I.type&&(s=f.encodeDate(s)),r.path=p(z,a,s),o[O]=r.path}else{var l=~B.indexOf("n")?x+i:x,c=~B.indexOf("s")?_+i:_,u=~B.indexOf("w")?w+n:w,h=~B.indexOf("e")?M+n:M;c-l>V&&(o[k]=r[S]=j(l),o[A]=r[L]=j(c)),h-u>U&&(o[T]=r[C]=F(u),o[E]=r[P]=F(h))}e.attr("d",d(t,r))}l.init(q),e.node().onmousemove=G}(t,m,i,e)}}function d(t,e){var r,n,o,s,l=e.type,c=a.getFromId(t,e.xref),h=a.getFromId(t,e.yref),d=t._fullLayout._size;if(c?(r=f.shapePositionToRange(c),n=function(t){return c._offset+c.r2p(r(t,!0))}):n=function(t){return d.l+d.w*t},h?(o=f.shapePositionToRange(h),s=function(t){return h._offset+h.r2p(o(t,!0))}):s=function(t){return d.t+d.h*(1-t)},"path"===l)return c&&"date"===c.type&&(n=f.decodeDate(n)),h&&"date"===h.type&&(s=f.decodeDate(s)),function(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,a=t.charAt(0),o=u.paramIsX[a],s=u.paramIsY[a],l=u.numParams[a],c=t.substr(1).replace(u.paramRE,function(t){return o[n]?t=e(t):s[n]&&(t=r(t)),++n>l&&(t="X"),t});return n>l&&(c=c.replace(/[\s,]*X.*/,""),i.log("Ignoring extra params in segment "+t)),a+c})}(e.path,n,s);var p=n(e.x0),m=n(e.x1),v=s(e.y0),g=s(e.y1);if("line"===l)return"M"+p+","+v+"L"+m+","+g;if("rect"===l)return"M"+p+","+v+"H"+m+"V"+g+"H"+p+"Z";var y=(p+m)/2,b=(v+g)/2,x=Math.abs(y-p),_=Math.abs(b-v),w="A"+x+","+_,M=y+x+","+b;return"M"+M+w+" 0 1,1 "+(y+","+(b-_))+w+" 0 0,1 "+M+"Z"}function p(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,i=t.charAt(0),a=u.paramIsX[i],o=u.paramIsY[i],s=u.numParams[i];return i+t.substr(1).replace(u.paramRE,function(t){return n>=s?t:(a[n]?t=e(t):o[n]&&(t=r(t)),n++,t)})})}e.exports={draw:function(t){var e=t._fullLayout;e._shapeUpperLayer.selectAll("path").remove(),e._shapeLowerLayer.selectAll("path").remove(),e._shapeSubplotLayers.selectAll("path").remove();for(var r=0;r<e.shapes.length;r++)e.shapes[r].visible&&h(t,r)},drawOne:h}},{"../../lib":724,"../../lib/setcursor":743,"../../plotly":765,"../../plots/cartesian/axes":770,"../color":598,"../dragelement":620,"../drawing":623,"./constants":678,"./helpers":681}],681:[function(t,e,r){"use strict";r.rangeToShapePosition=function(t){return"log"===t.type?t.r2d:function(t){return t}},r.shapePositionToRange=function(t){return"log"===t.type?t.d2r:function(t){return t}},r.decodeDate=function(t){return function(e){return e.replace&&(e=e.replace("_"," ")),t(e)}},r.encodeDate=function(t){return function(e){return t(e).replace(" ","_")}},r.getDataToPixel=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.shapePositionToRange(e);i=function(t){return e._offset+e.r2p(o(t,!0))},"date"===e.type&&(i=r.decodeDate(i))}else i=n?function(t){return a.t+a.h*(1-t)}:function(t){return a.l+a.w*t};return i},r.getPixelToData=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.rangeToShapePosition(e);i=function(t){return o(e.p2r(t-e._offset))}}else i=n?function(t){return 1-(t-a.t)/a.h}:function(t){return(t-a.l)/a.w};return i}},{}],682:[function(t,e,r){"use strict";var n=t("./draw");e.exports={moduleType:"component",name:"shapes",layoutAttributes:t("./attributes"),supplyLayoutDefaults:t("./defaults"),includeBasePlot:t("../../plots/cartesian/include_components")("shapes"),calcAutorange:t("./calc_autorange"),draw:n.draw,drawOne:n.drawOne}},{"../../plots/cartesian/include_components":780,"./attributes":676,"./calc_autorange":677,"./defaults":679,"./draw":680}],683:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../plots/cartesian/axes"),a=t("./attributes"),o=t("./helpers");e.exports=function(t,e,r,s,l){function c(r,i){return n.coerce(t,e,a,r,i)}if(s=s||{},!c("visible",!(l=l||{}).itemIsNotPlainObject))return 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n=t("../../plots/font_attributes"),i=t("../../plots/pad_attributes"),a=t("../../lib/extend").extendDeepAll,o=t("../../plot_api/edit_types").overrideAll,s=t("../../plots/animation_attributes"),l=t("./constants");e.exports=o({_isLinkedToArray:"slider",visible:{valType:"boolean",dflt:!0},active:{valType:"number",min:0,dflt:0},steps:{_isLinkedToArray:"step",method:{valType:"enumerated",values:["restyle","relayout","animate","update","skip"],dflt:"restyle"},args:{valType:"info_array",freeLength:!0,items:[{valType:"any"},{valType:"any"},{valType:"any"}]},label:{valType:"string"},value:{valType:"string"},execute:{valType:"boolean",dflt:!0}},lenmode:{valType:"enumerated",values:["fraction","pixels"],dflt:"fraction"},len:{valType:"number",min:0,dflt:1},x:{valType:"number",min:-2,max:3,dflt:0},pad:a({},i,{},{t:{dflt:20}}),xanchor:{valType:"enumerated",values:["auto","left","center","right"],dflt:"left"},y:{valType:"number",min:-2,max:3,dflt:0},yanchor:{valType:"enumerated",values:["auto","top","middle","bottom"],dflt:"top"},transition:{duration:{valType:"number",min:0,dflt:150},easing:{valType:"enumerated",values:s.transition.easing.values,dflt:"cubic-in-out"}},currentvalue:{visible:{valType:"boolean",dflt:!0},xanchor:{valType:"enumerated",values:["left","center","right"],dflt:"left"},offset:{valType:"number",dflt:10},prefix:{valType:"string"},suffix:{valType:"string"},font:n({})},font:n({}),activebgcolor:{valType:"color",dflt:l.gripBgActiveColor},bgcolor:{valType:"color",dflt:l.railBgColor},bordercolor:{valType:"color",dflt:l.railBorderColor},borderwidth:{valType:"number",min:0,dflt:l.railBorderWidth},ticklen:{valType:"number",min:0,dflt:l.tickLength},tickcolor:{valType:"color",dflt:l.tickColor},tickwidth:{valType:"number",min:0,dflt:1},minorticklen:{valType:"number",min:0,dflt:l.minorTickLength}},"arraydraw","from-root")},{"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/animation_attributes":766,"../../plots/font_attributes":797,"../../plots/pad_attributes":832,"./constants":685}],685:[function(t,e,r){"use 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s=e/n;this.vbar.call(a.setTranslate,t,e+s*this._vbarTranslateMax)}}},{"../../lib":724,"../color":598,"../drawing":623,d3:128}],696:[function(t,e,r){"use strict";e.exports={FROM_BL:{left:0,center:.5,right:1,bottom:0,middle:.5,top:1},FROM_TL:{left:0,center:.5,right:1,bottom:1,middle:.5,top:0},FROM_BR:{left:1,center:.5,right:0,bottom:0,middle:.5,top:1},LINE_SPACING:1.3,MID_SHIFT:.35,OPPOSITE_SIDE:{left:"right",right:"left",top:"bottom",bottom:"top"}}},{}],697:[function(t,e,r){"use strict";e.exports={COMPARISON_OPS:["=","!=","<",">=",">","<="],COMPARISON_OPS2:["=","<",">=",">","<="],INTERVAL_OPS:["[]","()","[)","(]","][",")(","](",")["],SET_OPS:["{}","}{"],CONSTRAINT_REDUCTION:{"=":"=","<":"<","<=":"<",">":">",">=":">","[]":"[]","()":"[]","[)":"[]","(]":"[]","][":"][",")(":"][","](":"][",")[":"]["}}},{}],698:[function(t,e,r){"use strict";e.exports={solid:[1],dot:[1,1],dash:[4,1],longdash:[8,1],dashdot:[4,1,1,1],longdashdot:[8,1,1,1]}},{}],699:[function(t,e,r){"use 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x<=_?[a,y,r[2]]:[v,b,r[2]]}(M,r,S);isFinite(k[0])&&isFinite(k[1])&&isFinite(k[2])||(k=S),e.rotate(k),S=k}}else r=p(e,T=x);h.of(this,arguments)({type:"zoom"})}),A=h.of(this,arguments),d++||A({type:"zoomstart"})}).on("zoomend",function(){var r;n.select(this).style(l),v.call(f,"zoom",null),r=h.of(this,arguments),--d||r({type:"zoomend"}),u(t,e,b)}).on("zoom.redraw",function(){t.render()}),n.rebind(f,h,"on")}function p(t,e){var r=t.invert(e);return r&&isFinite(r[0])&&isFinite(r[1])&&function(t){var e=t[0]*a,r=t[1]*a,n=Math.cos(r);return[n*Math.cos(e),n*Math.sin(e),Math.sin(r)]}(r)}function m(t,e,r,n){var i=v(r-t),a=v(n-e);return Math.sqrt(i*i+a*a)}function v(t){return(t%360+540)%360-180}function g(t,e,r){var n=r*a,i=t.slice(),o=0===e?1:0,s=2===e?1:2,l=Math.cos(n),c=Math.sin(n);return i[o]=t[o]*l-t[s]*c,i[s]=t[s]*l+t[o]*c,i}function y(t,e){for(var r=0,n=0,i=t.length;n<i;++n)r+=t[n]*e[n];return r}e.exports=function(t,e){var r=t.projection;return(e._isScoped?f:e._isClipped?d:h)(t,r)}},{"../../lib":724,d3:128}],807:[function(t,e,r){"use strict";var n=t("../registry"),i=t("./cartesian/constants").SUBPLOT_PATTERN;r.getSubplotCalcData=function(t,e,r){var i=n.subplotsRegistry[e];if(!i)return[];for(var a=i.attr,o=[],s=0;s<t.length;s++){var l=t[s];l[0].trace[a]===r&&o.push(l)}return o},r.getModuleCalcData=function(t,e){var r=[],i="string"==typeof e?n.getModule(e):e;if(!i)return r;for(var a=0;a<t.length;a++){var o=t[a],s=o[0].trace;s._module===i&&!0===s.visible&&r.push(o)}return r},r.getSubplotData=function(t,e,r){if(!n.subplotsRegistry[e])return[];var a,o,s,l=n.subplotsRegistry[e].attr,c=[];if("gl2d"===e){var u=r.match(i);o="x"+u[1],s="y"+u[2]}for(var f=0;f<t.length;f++)a=t[f],"gl2d"===e&&n.traceIs(a,"gl2d")?a[l[0]]===o&&a[l[1]]===s&&c.push(a):a[l]===r&&c.push(a);return c}},{"../registry":854,"./cartesian/constants":775}],808:[function(t,e,r){"use strict";var n=t("mouse-change"),i=t("mouse-wheel"),a=t("mouse-event-offset"),o=t("../cartesian/constants"),s=t("has-passive-events");e.exports=function(t){var e=t.mouseContainer,r=t.glplot,l=new function(t,e){this.element=t,this.plot=e,this.mouseListener=null,this.wheelListener=null,this.lastInputTime=Date.now(),this.lastPos=[0,0],this.boxEnabled=!1,this.boxInited=!1,this.boxStart=[0,0],this.boxEnd=[0,0],this.dragStart=[0,0]}(e,r);function c(){t.xaxis.autorange=!1,t.yaxis.autorange=!1}function u(e,n,i){var a,s,u=t.calcDataBox(),f=r.viewBox,h=l.lastPos[0],d=l.lastPos[1],p=o.MINDRAG*r.pixelRatio,m=o.MINZOOM*r.pixelRatio;function v(e,r,n){var i=Math.min(r,n),a=Math.max(r,n);i!==a?(u[e]=i,u[e+2]=a,l.dataBox=u,t.setRanges(u)):(t.selectBox.selectBox=[0,0,1,1],t.glplot.setDirty())}switch(n*=r.pixelRatio,i*=r.pixelRatio,i=f[3]-f[1]-i,t.fullLayout.dragmode){case"zoom":if(e){var g=n/(f[2]-f[0])*(u[2]-u[0])+u[0],y=i/(f[3]-f[1])*(u[3]-u[1])+u[1];l.boxInited||(l.boxStart[0]=g,l.boxStart[1]=y,l.dragStart[0]=n,l.dragStart[1]=i),l.boxEnd[0]=g,l.boxEnd[1]=y,l.boxInited=!0,l.boxEnabled||l.boxStart[0]===l.boxEnd[0]&&l.boxStart[1]===l.boxEnd[1]||(l.boxEnabled=!0);var b=Math.abs(l.dragStart[0]-n)<m,x=Math.abs(l.dragStart[1]-i)<m;if(!function(){for(var e=t.graphDiv._fullLayout._axisConstraintGroups,r=t.xaxis._id,n=t.yaxis._id,i=0;i<e.length;i++)if(-1!==e[i][r]){if(-1!==e[i][n])return!0;break}return!1}()||b&&x)b&&(l.boxEnd[0]=l.boxStart[0]),x&&(l.boxEnd[1]=l.boxStart[1]);else{a=l.boxEnd[0]-l.boxStart[0],s=l.boxEnd[1]-l.boxStart[1];var _=(u[3]-u[1])/(u[2]-u[0]);Math.abs(a*_)>Math.abs(s)?(l.boxEnd[1]=l.boxStart[1]+Math.abs(a)*_*(s>=0?1:-1),l.boxEnd[1]<u[1]?(l.boxEnd[1]=u[1],l.boxEnd[0]=l.boxStart[0]+(u[1]-l.boxStart[1])/Math.abs(_)):l.boxEnd[1]>u[3]&&(l.boxEnd[1]=u[3],l.boxEnd[0]=l.boxStart[0]+(u[3]-l.boxStart[1])/Math.abs(_))):(l.boxEnd[0]=l.boxStart[0]+Math.abs(s)/_*(a>=0?1:-1),l.boxEnd[0]<u[0]?(l.boxEnd[0]=u[0],l.boxEnd[1]=l.boxStart[1]+(u[0]-l.boxStart[0])*Math.abs(_)):l.boxEnd[0]>u[2]&&(l.boxEnd[0]=u[2],l.boxEnd[1]=l.boxStart[1]+(u[2]-l.boxStart[0])*Math.abs(_)))}}else l.boxEnabled?(a=l.boxStart[0]!==l.boxEnd[0],s=l.boxStart[1]!==l.boxEnd[1],a||s?(a&&(v(0,l.boxStart[0],l.boxEnd[0]),t.xaxis.autorange=!1),s&&(v(1,l.boxStart[1],l.boxEnd[1]),t.yaxis.autorange=!1),t.relayoutCallback()):t.glplot.setDirty(),l.boxEnabled=!1,l.boxInited=!1):l.boxInited&&(l.boxInited=!1);break;case"pan":l.boxEnabled=!1,l.boxInited=!1,e?(l.panning||(l.dragStart[0]=n,l.dragStart[1]=i),Math.abs(l.dragStart[0]-n)<p&&(n=l.dragStart[0]),Math.abs(l.dragStart[1]-i)<p&&(i=l.dragStart[1]),a=(h-n)*(u[2]-u[0])/(r.viewBox[2]-r.viewBox[0]),s=(d-i)*(u[3]-u[1])/(r.viewBox[3]-r.viewBox[1]),u[0]+=a,u[2]+=a,u[1]+=s,u[3]+=s,t.setRanges(u),l.panning=!0,l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations()):l.panning&&(l.panning=!1,t.relayoutCallback())}l.lastPos[0]=n,l.lastPos[1]=i}return l.mouseListener=n(e,u),e.addEventListener("touchstart",function(t){var r=a(t.changedTouches[0],e);u(0,r[0],r[1]),u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchmove",function(t){t.preventDefault();var r=a(t.changedTouches[0],e);u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchend",function(t){u(0,l.lastPos[0],l.lastPos[1]),t.preventDefault()},!!s&&{passive:!1}),l.wheelListener=i(e,function(e,n){if(!t.scrollZoom)return!1;var i=t.calcDataBox(),a=r.viewBox,o=l.lastPos[0],s=l.lastPos[1],u=Math.exp(5*n/(a[3]-a[1])),f=o/(a[2]-a[0])*(i[2]-i[0])+i[0],h=s/(a[3]-a[1])*(i[3]-i[1])+i[1];return i[0]=(i[0]-f)*u+f,i[2]=(i[2]-f)*u+f,i[1]=(i[1]-h)*u+h,i[3]=(i[3]-h)*u+h,t.setRanges(i),l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations(),t.relayoutCallback(),!0},!0),l}},{"../cartesian/constants":775,"has-passive-events":256,"mouse-change":424,"mouse-event-offset":425,"mouse-wheel":427}],809:[function(t,e,r){"use strict";var n=t("../cartesian/axes"),i=t("../../lib/html2unicode"),a=t("../../lib/str2rgbarray");function o(t){this.scene=t,this.gl=t.gl,this.pixelRatio=t.pixelRatio,this.screenBox=[0,0,1,1],this.viewBox=[0,0,1,1],this.dataBox=[-1,-1,1,1],this.borderLineEnable=[!1,!1,!1,!1],this.borderLineWidth=[1,1,1,1],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.ticks=[[],[]],this.tickEnable=[!0,!0,!1,!1],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labels=["x","y"],this.labelEnable=[!0,!0,!1,!1],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelPad=[15,15,15,15],this.labelSize=[12,12],this.labelFont=["sans-serif","sans-serif"],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.title="",this.titleEnable=!0,this.titleCenter=[0,0,0,0],this.titleAngle=0,this.titleColor=[0,0,0,1],this.titleFont="sans-serif",this.titleSize=18,this.gridLineEnable=[!0,!0],this.gridLineColor=[[0,0,0,.5],[0,0,0,.5]],this.gridLineWidth=[1,1],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[1,1],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderColor=!1,this.backgroundColor=[0,0,0,0],this.static=this.scene.staticPlot}var s=o.prototype,l=["xaxis","yaxis"];s.merge=function(t){var e,r,n,o,s,c,u,f,h,d,p;for(this.titleEnable=!1,this.backgroundColor=a(t.plot_bgcolor),d=0;d<2;++d){var m=(e=l[d]).charAt(0);for(n=(r=t[this.scene[e]._name]).title===this.scene.fullLayout._dfltTitle[m]?"":r.title,p=0;p<=2;p+=2)this.labelEnable[d+p]=!1,this.labels[d+p]=i(n),this.labelColor[d+p]=a(r.titlefont.color),this.labelFont[d+p]=r.titlefont.family,this.labelSize[d+p]=r.titlefont.size,this.labelPad[d+p]=this.getLabelPad(e,r),this.tickEnable[d+p]=!1,this.tickColor[d+p]=a((r.tickfont||{}).color),this.tickAngle[d+p]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180,this.tickPad[d+p]=this.getTickPad(r),this.tickMarkLength[d+p]=0,this.tickMarkWidth[d+p]=r.tickwidth||0,this.tickMarkColor[d+p]=a(r.tickcolor),this.borderLineEnable[d+p]=!1,this.borderLineColor[d+p]=a(r.linecolor),this.borderLineWidth[d+p]=r.linewidth||0;u=this.hasSharedAxis(r),s=this.hasAxisInDfltPos(e,r)&&!u,c=this.hasAxisInAltrPos(e,r)&&!u,o=r.mirror||!1,f=u?-1!==String(o).indexOf("all"):!!o,h=u?"allticks"===o:-1!==String(o).indexOf("ticks"),s?this.labelEnable[d]=!0:c&&(this.labelEnable[d+2]=!0),s?this.tickEnable[d]=r.showticklabels:c&&(this.tickEnable[d+2]=r.showticklabels),(s||f)&&(this.borderLineEnable[d]=r.showline),(c||f)&&(this.borderLineEnable[d+2]=r.showline),(s||h)&&(this.tickMarkLength[d]=this.getTickMarkLength(r)),(c||h)&&(this.tickMarkLength[d+2]=this.getTickMarkLength(r)),this.gridLineEnable[d]=r.showgrid,this.gridLineColor[d]=a(r.gridcolor),this.gridLineWidth[d]=r.gridwidth,this.zeroLineEnable[d]=r.zeroline,this.zeroLineColor[d]=a(r.zerolinecolor),this.zeroLineWidth[d]=r.zerolinewidth}},s.hasSharedAxis=function(t){var e=this.scene,r=e.fullLayout._subplots.gl2d;return 0!==n.findSubplotsWithAxis(r,t).indexOf(e.id)},s.hasAxisInDfltPos=function(t,e){var r=e.side;return"xaxis"===t?"bottom"===r:"yaxis"===t?"left"===r:void 0},s.hasAxisInAltrPos=function(t,e){var r=e.side;return"xaxis"===t?"top"===r:"yaxis"===t?"right"===r:void 0},s.getLabelPad=function(t,e){var r=e.titlefont.size,n=e.showticklabels;return"xaxis"===t?"top"===e.side?r*(1.5+(n?1:0))-10:r*(1.5+(n?.5:0))-10:"yaxis"===t?"right"===e.side?10+r*(1.5+(n?1:.5)):10+r*(1.5+(n?.5:0)):void 0},s.getTickPad=function(t){return"outside"===t.ticks?10+t.ticklen:15},s.getTickMarkLength=function(t){if(!t.ticks)return 0;var e=t.ticklen;return"inside"===t.ticks?-e:e},e.exports=function(t){return new o(t)}},{"../../lib/html2unicode":722,"../../lib/str2rgbarray":746,"../cartesian/axes":770}],810:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("./scene2d"),a=t("../layout_attributes"),o=t("../../constants/xmlns_namespaces"),s=t("../cartesian/constants"),l=t("../cartesian"),c=t("../../components/fx/layout_attributes"),u=t("../get_data").getSubplotData;r.name="gl2d",r.attr=["xaxis","yaxis"],r.idRoot=["x","y"],r.idRegex=s.idRegex,r.attrRegex=s.attrRegex,r.attributes=t("../cartesian/attributes"),r.supplyLayoutDefaults=function(t,e,r){e._has("cartesian")||l.supplyLayoutDefaults(t,e,r)},r.layoutAttrOverrides=n(l.layoutAttributes,"plot","from-root"),r.baseLayoutAttrOverrides=n({plot_bgcolor:a.plot_bgcolor,hoverlabel:c.hoverlabel},"plot","nested"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl2d,a=0;a<n.length;a++){var o=n[a],s=e._plots[o],l=u(r,"gl2d",o),c=s._scene2d;void 0===c&&(c=new i({id:o,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),s._scene2d=c),c.plot(l,t.calcdata,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl2d||[],a=0;a<i.length;a++){var o=i[a],s=n._plots[o];if(s._scene2d)0===u(t,"gl2d",o).length&&(s._scene2d.destroy(),delete n._plots[o])}l.clean.apply(this,arguments)},r.drawFramework=function(t){t._context.staticPlot||l.drawFramework(t)},r.toSVG=function(t){for(var e=t._fullLayout,r=e._subplots.gl2d,n=0;n<r.length;n++){var i=e._plots[r[n]]._scene2d,a=i.toImage("png");e._glimages.append("svg:image").attr({xmlns:o.svg,"xlink:href":a,x:0,y:0,width:"100%",height:"100%",preserveAspectRatio:"none"}),i.destroy()}},r.updateFx=function(t){for(var e=t._subplots.gl2d,r=0;r<e.length;r++){t._plots[e[r]]._scene2d.updateFx(t.dragmode)}}},{"../../components/fx/layout_attributes":641,"../../constants/xmlns_namespaces":704,"../../plot_api/edit_types":754,"../cartesian":781,"../cartesian/attributes":769,"../cartesian/constants":775,"../get_data":807,"../layout_attributes":824,"./scene2d":811}],811:[function(t,e,r){"use strict";var n,i,a=t("../../registry"),o=t("../../plots/cartesian/axes"),s=t("../../components/fx"),l=t("gl-plot2d"),c=t("gl-spikes2d"),u=t("gl-select-box"),f=t("webgl-context"),h=t("./convert"),d=t("./camera"),p=t("../../lib/html2unicode"),m=t("../../lib/show_no_webgl_msg"),v=t("../cartesian/constraints"),g=v.enforce,y=v.clean,b=["xaxis","yaxis"],x=t("../cartesian/constants").SUBPLOT_PATTERN;function _(t,e){this.container=t.container,this.graphDiv=t.graphDiv,this.pixelRatio=t.plotGlPixelRatio||window.devicePixelRatio,this.id=t.id,this.staticPlot=!!t.staticPlot,this.scrollZoom=this.graphDiv._context.scrollZoom,this.fullData=null,this.updateRefs(e),this.makeFramework(),this.glplotOptions=h(this),this.glplotOptions.merge(e),this.glplot=l(this.glplotOptions),this.camera=d(this),this.traces={},this.spikes=c(this.glplot),this.selectBox=u(this.glplot,{innerFill:!1,outerFill:!0}),this.lastButtonState=0,this.pickResult=null,this.isMouseOver=!0,this.bounds=[1/0,1/0,-1/0,-1/0],this.stopped=!1,this.redraw=this.draw.bind(this),this.redraw()}e.exports=_;var w=_.prototype;w.makeFramework=function(){if(this.staticPlot){if(!(i||(n=document.createElement("canvas"),i=f({canvas:n,preserveDrawingBuffer:!1,premultipliedAlpha:!0,antialias:!0}))))throw new Error("Error creating static canvas/context for image server");this.canvas=n,this.gl=i}else{var t=this.container.querySelector(".gl-canvas-focus"),e=f({canvas:t,preserveDrawingBuffer:!0,premultipliedAlpha:!0});e||m(this),this.canvas=t,this.gl=e}var r=this.canvas;r.style.width="100%",r.style.height="100%",r.style.position="absolute",r.style.top="0px",r.style.left="0px",r.style["pointer-events"]="none",this.updateSize(r),r.className+=" user-select-none";var a=this.svgContainer=document.createElementNS("http://www.w3.org/2000/svg","svg");a.style.position="absolute",a.style.top=a.style.left="0px",a.style.width=a.style.height="100%",a.style["z-index"]=20,a.style["pointer-events"]="none";var o=this.mouseContainer=document.createElement("div");o.style.position="absolute",o.style["pointer-events"]="auto",this.pickCanvas=this.container.querySelector(".gl-canvas-pick");var s=this.container;s.appendChild(a),s.appendChild(o);var l=this;o.addEventListener("mouseout",function(){l.isMouseOver=!1,l.unhover()}),o.addEventListener("mouseover",function(){l.isMouseOver=!0})},w.toImage=function(t){t||(t="png"),this.stopped=!0,this.staticPlot&&this.container.appendChild(n),this.updateSize(this.canvas);var e=this.glplot.gl,r=e.drawingBufferWidth,i=e.drawingBufferHeight;e.clearColor(1,1,1,0),e.clear(e.COLOR_BUFFER_BIT|e.DEPTH_BUFFER_BIT),this.glplot.setDirty(),this.glplot.draw(),e.bindFramebuffer(e.FRAMEBUFFER,null);var a=new Uint8Array(r*i*4);e.readPixels(0,0,r,i,e.RGBA,e.UNSIGNED_BYTE,a);for(var o=0,s=i-1;o<s;++o,--s)for(var l=0;l<r;++l)for(var c=0;c<4;++c){var u=a[4*(r*o+l)+c];a[4*(r*o+l)+c]=a[4*(r*s+l)+c],a[4*(r*s+l)+c]=u}var f=document.createElement("canvas");f.width=r,f.height=i;var h,d=f.getContext("2d"),p=d.createImageData(r,i);switch(p.data.set(a),d.putImageData(p,0,0),t){case"jpeg":h=f.toDataURL("image/jpeg");break;case"webp":h=f.toDataURL("image/webp");break;default:h=f.toDataURL("image/png")}return 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i={lastInputTime:this.camera.lastInputTime};i[e._name]=e.range.slice(0),i[r._name]=r.range.slice(0),t.emit("plotly_relayout",i)},w.cameraChanged=function(){var t=this.camera;this.glplot.setDataBox(this.calcDataBox());var e=this.computeTickMarks();(function(t,e){for(var r=0;r<2;++r){var n=t[r],i=e[r];if(n.length!==i.length)return!0;for(var a=0;a<n.length;++a)if(n[a].x!==i[a].x)return!0}return!1})(e,this.glplotOptions.ticks)&&(this.glplotOptions.ticks=e,this.glplotOptions.dataBox=t.dataBox,this.glplot.update(this.glplotOptions),this.handleAnnotations())},w.handleAnnotations=function(){for(var t=this.graphDiv,e=this.fullLayout.annotations,r=0;r<e.length;r++){var n=e[r];n.xref===this.xaxis._id&&n.yref===this.yaxis._id&&a.getComponentMethod("annotations","drawOne")(t,r)}},w.destroy=function(){if(this.glplot){var t=this.traces;t&&Object.keys(t).map(function(e){t[e].dispose(),delete 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e=this.xaxis,r=this.yaxis,n=e.l2r,i=r.l2r;e.range=[n(t[0]),n(t[2])],r.range=[i(t[1]),i(t[3])]},w.updateTraces=function(t,e){var r,n,i,a=Object.keys(this.traces);this.fullData=t;t:for(r=0;r<a.length;r++){var o=a[r],s=this.traces[o];for(n=0;n<t.length;n++)if((i=t[n]).uid===o&&i.type===s.type)continue t;s.dispose(),delete this.traces[o]}for(r=0;r<t.length;r++){i=t[r];var l=e[r],c=this.traces[i.uid];c?c.update(i,l):(c=i._module.plot(this,i,l),this.traces[i.uid]=c)}this.glplot.objects.sort(function(t,e){return t._trace.index-e._trace.index})},w.updateFx=function(t){"lasso"===t||"select"===t?(this.pickCanvas.style["pointer-events"]="none",this.mouseContainer.style["pointer-events"]="none"):(this.pickCanvas.style["pointer-events"]="auto",this.mouseContainer.style["pointer-events"]="auto"),this.mouseContainer.style.cursor="pan"===t?"move":"zoom"===t?"crosshair":null},w.emitPointAction=function(t,e){for(var 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v=this.fullData[m.trace.index]||{},g=m.pointIndex,y=s.castHoverinfo(v,i,g);if(y&&"all"!==y){var b=y.split("+");-1===b.indexOf("x")&&(m.traceCoord[0]=void 0),-1===b.indexOf("y")&&(m.traceCoord[1]=void 0),-1===b.indexOf("z")&&(m.traceCoord[2]=void 0),-1===b.indexOf("text")&&(m.textLabel=void 0),-1===b.indexOf("name")&&(m.name=void 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n=t("../../plot_api/edit_types").overrideAll,i=t("../../components/fx/layout_attributes"),a=t("./scene"),o=t("../get_data").getSubplotData,s=t("../../lib"),l=t("../../constants/xmlns_namespaces");r.name="gl3d",r.attr="scene",r.idRoot="scene",r.idRegex=r.attrRegex=s.counterRegex("scene"),r.attributes=t("./layout/attributes"),r.layoutAttributes=t("./layout/layout_attributes"),r.baseLayoutAttrOverrides=n({hoverlabel:i.hoverlabel},"plot","nested"),r.supplyLayoutDefaults=t("./layout/defaults"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl3d,i=0;i<n.length;i++){var l=n[i],c=o(r,"gl3d",l),u=e[l],f=u._scene;f||(f=new a({id:l,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),u._scene=f),f.cameraInitial||(f.cameraInitial=s.extendDeep({},u.camera)),f.plot(c,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl3d||[],a=0;a<i.length;a++){var 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d=l[h];c=t[d]||{},u=e[d]={_id:d[0]+r.scene,_name:d},o(c,u,f,r.data),s(c,u,f,{font:r.font,letter:d[0],data:r.data,showGrid:!0,bgColor:r.bgColor,calendar:r.calendar},r.fullLayout),f("gridcolor",n(u.color,r.bgColor,13600/187).toRgbString()),f("title",d[0]),u.setScale=i.noop,f("showspikes")&&(f("spikesides"),f("spikethickness"),f("spikecolor",u.color)),f("showaxeslabels"),f("showbackground")&&f("backgroundcolor")}}},{"../../../lib":724,"../../cartesian/axis_defaults":772,"../../cartesian/type_defaults":794,"./axis_attributes":815,tinycolor2:526}],817:[function(t,e,r){"use strict";var n=t("../../../lib/html2unicode"),i=t("../../../lib/str2rgbarray"),a=["xaxis","yaxis","zaxis"];function o(){this.bounds=[[-10,-10,-10],[10,10,10]],this.ticks=[[],[],[]],this.tickEnable=[!0,!0,!0],this.tickFont=["sans-serif","sans-serif","sans-serif"],this.tickSize=[12,12,12],this.tickAngle=[0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[18,18,18],this.labels=["x","y","z"],this.labelEnable=[!0,!0,!0],this.labelFont=["Open Sans","Open Sans","Open Sans"],this.labelSize=[20,20,20],this.labelAngle=[0,0,0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[30,30,30],this.lineEnable=[!0,!0,!0],this.lineMirror=[!1,!1,!1],this.lineWidth=[1,1,1],this.lineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.lineTickEnable=[!0,!0,!0],this.lineTickMirror=[!1,!1,!1],this.lineTickLength=[10,10,10],this.lineTickWidth=[1,1,1],this.lineTickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.gridEnable=[!0,!0,!0],this.gridWidth=[1,1,1],this.gridColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroEnable=[!0,!0,!0],this.zeroLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroLineWidth=[2,2,2],this.backgroundEnable=[!0,!0,!0],this.backgroundColor=[[.8,.8,.8,.5],[.8,.8,.8,.5],[.8,.8,.8,.5]],this._defaultTickPad=this.tickPad.slice(),this._defaultLabelPad=this.labelPad.slice(),this._defaultLineTickLength=this.lineTickLength.slice()}o.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[a[e]];r.visible?(this.labels[e]=n(r.title),"titlefont"in r&&(r.titlefont.color&&(this.labelColor[e]=i(r.titlefont.color)),r.titlefont.family&&(this.labelFont[e]=r.titlefont.family),r.titlefont.size&&(this.labelSize[e]=r.titlefont.size)),"showline"in r&&(this.lineEnable[e]=r.showline),"linecolor"in r&&(this.lineColor[e]=i(r.linecolor)),"linewidth"in r&&(this.lineWidth[e]=r.linewidth),"showgrid"in r&&(this.gridEnable[e]=r.showgrid),"gridcolor"in r&&(this.gridColor[e]=i(r.gridcolor)),"gridwidth"in r&&(this.gridWidth[e]=r.gridwidth),"log"===r.type?this.zeroEnable[e]=!1:"zeroline"in r&&(this.zeroEnable[e]=r.zeroline),"zerolinecolor"in r&&(this.zeroLineColor[e]=i(r.zerolinecolor)),"zerolinewidth"in r&&(this.zeroLineWidth[e]=r.zerolinewidth),"ticks"in r&&r.ticks?this.lineTickEnable[e]=!0:this.lineTickEnable[e]=!1,"ticklen"in r&&(this.lineTickLength[e]=this._defaultLineTickLength[e]=r.ticklen),"tickcolor"in r&&(this.lineTickColor[e]=i(r.tickcolor)),"tickwidth"in r&&(this.lineTickWidth[e]=r.tickwidth),"tickangle"in r&&(this.tickAngle[e]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180),"showticklabels"in r&&(this.tickEnable[e]=r.showticklabels),"tickfont"in r&&(r.tickfont.color&&(this.tickColor[e]=i(r.tickfont.color)),r.tickfont.family&&(this.tickFont[e]=r.tickfont.family),r.tickfont.size&&(this.tickSize[e]=r.tickfont.size)),"mirror"in r?-1!==["ticks","all","allticks"].indexOf(r.mirror)?(this.lineTickMirror[e]=!0,this.lineMirror[e]=!0):!0===r.mirror?(this.lineTickMirror[e]=!1,this.lineMirror[e]=!0):(this.lineTickMirror[e]=!1,this.lineMirror[e]=!1):this.lineMirror[e]=!1,"showbackground"in r&&!1!==r.showbackground?(this.backgroundEnable[e]=!0,this.backgroundColor[e]=i(r.backgroundcolor)):this.backgroundEnable[e]=!1):(this.tickEnable[e]=!1,this.labelEnable[e]=!1,this.lineEnable[e]=!1,this.lineTickEnable[e]=!1,this.gridEnable[e]=!1,this.zeroEnable[e]=!1,this.backgroundEnable[e]=!1)}},e.exports=function(t){var e=new o;return e.merge(t),e}},{"../../../lib/html2unicode":722,"../../../lib/str2rgbarray":746}],818:[function(t,e,r){"use strict";var n=t("../../../lib"),i=t("../../../components/color"),a=t("../../../registry"),o=t("../../subplot_defaults"),s=t("./axis_defaults"),l=t("./layout_attributes");function c(t,e,r,n){for(var o=r("bgcolor"),l=i.combine(o,n.paper_bgcolor),c=["up","center","eye"],u=0;u<c.length;u++)r("camera."+c[u]+".x"),r("camera."+c[u]+".y"),r("camera."+c[u]+".z");var f=!!r("aspectratio.x")&&!!r("aspectratio.y")&&!!r("aspectratio.z"),h=r("aspectmode",f?"manual":"auto");f||(t.aspectratio=e.aspectratio={x:1,y:1,z:1},"manual"===h&&(e.aspectmode="auto"),t.aspectmode=e.aspectmode),s(t,e,{font:n.font,scene:n.id,data:n.fullData,bgColor:l,calendar:n.calendar,fullLayout:n.fullLayout}),a.getComponentMethod("annotations3d","handleDefaults")(t,e,n),r("dragmode",n.getDfltFromLayout("dragmode")),r("hovermode",n.getDfltFromLayout("hovermode"))}e.exports=function(t,e,r){var i=e._basePlotModules.length>1;o(t,e,r,{type:"gl3d",attributes:l,handleDefaults:c,fullLayout:e,font:e.font,fullData:r,getDfltFromLayout:function(e){if(!i)return n.validate(t[e],l[e])?t[e]:void 0},paper_bgcolor:e.paper_bgcolor,calendar:e.calendar})}},{"../../../components/color":598,"../../../lib":724,"../../../registry":854,"../../subplot_defaults":846,"./axis_defaults":816,"./layout_attributes":819}],819:[function(t,e,r){"use strict";var n=t("./axis_attributes"),i=t("../../domain_attributes"),a=t("../../../lib/extend").extendFlat,o=t("../../../lib").counterRegex;function s(t,e,r){return{x:{valType:"number",dflt:t,editType:"camera"},y:{valType:"number",dflt:e,editType:"camera"},z:{valType:"number",dflt:r,editType:"camera"},editType:"camera"}}e.exports={_arrayAttrRegexps:[o("scene",".annotations",!0)],bgcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"plot"},camera:{up:a(s(0,0,1),{}),center:a(s(0,0,0),{}),eye:a(s(1.25,1.25,1.25),{}),editType:"camera"},domain:i({name:"scene",editType:"plot"}),aspectmode:{valType:"enumerated",values:["auto","cube","data","manual"],dflt:"auto",editType:"plot",impliedEdits:{"aspectratio.x":void 0,"aspectratio.y":void 0,"aspectratio.z":void 0}},aspectratio:{x:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},y:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},z:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},editType:"plot",impliedEdits:{aspectmode:"manual"}},xaxis:n,yaxis:n,zaxis:n,dragmode:{valType:"enumerated",values:["orbit","turntable","zoom","pan",!1],dflt:"turntable",editType:"plot"},hovermode:{valType:"enumerated",values:["closest",!1],dflt:"closest",editType:"modebar"},editType:"plot",_deprecated:{cameraposition:{valType:"info_array",editType:"camera"}}}},{"../../../lib":724,"../../../lib/extend":713,"../../domain_attributes":796,"./axis_attributes":815}],820:[function(t,e,r){"use strict";var n=t("../../../lib/str2rgbarray"),i=["xaxis","yaxis","zaxis"];function a(){this.enabled=[!0,!0,!0],this.colors=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.drawSides=[!0,!0,!0],this.lineWidth=[1,1,1]}a.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[i[e]];r.visible?(this.enabled[e]=r.showspikes,this.colors[e]=n(r.spikecolor),this.drawSides[e]=r.spikesides,this.lineWidth[e]=r.spikethickness):(this.enabled[e]=!1,this.drawSides[e]=!1)}},e.exports=function(t){var e=new a;return e.merge(t),e}},{"../../../lib/str2rgbarray":746}],821:[function(t,e,r){"use strict";e.exports=function(t){for(var e=t.axesOptions,r=t.glplot.axesPixels,l=t.fullSceneLayout,c=[[],[],[]],u=0;u<3;++u){var f=l[o[u]];if(f._length=(r[u].hi-r[u].lo)*r[u].pixelsPerDataUnit/t.dataScale[u],Math.abs(f._length)===1/0)c[u]=[];else{f._input_range=f.range.slice(),f.range[0]=r[u].lo/t.dataScale[u],f.range[1]=r[u].hi/t.dataScale[u],f._m=1/(t.dataScale[u]*r[u].pixelsPerDataUnit),f.range[0]===f.range[1]&&(f.range[0]-=1,f.range[1]+=1);var h=f.tickmode;if("auto"===f.tickmode){f.tickmode="linear";var d=f.nticks||i.constrain(f._length/40,4,9);n.autoTicks(f,Math.abs(f.range[1]-f.range[0])/d)}for(var p=n.calcTicks(f),m=0;m<p.length;++m)p[m].x=p[m].x*t.dataScale[u],p[m].text=a(p[m].text);c[u]=p,f.tickmode=h}}e.ticks=c;for(var u=0;u<3;++u){s[u]=.5*(t.glplot.bounds[0][u]+t.glplot.bounds[1][u]);for(var m=0;m<2;++m)e.bounds[m][u]=t.glplot.bounds[m][u]}t.contourLevels=function(t){for(var e=new Array(3),r=0;r<3;++r){for(var n=t[r],i=new Array(n.length),a=0;a<n.length;++a)i[a]=n[a].x;e[r]=i}return e}(c)};var n=t("../../cartesian/axes"),i=t("../../../lib"),a=t("../../../lib/html2unicode"),o=["xaxis","yaxis","zaxis"],s=[0,0,0]},{"../../../lib":724,"../../../lib/html2unicode":722,"../../cartesian/axes":770}],822:[function(t,e,r){"use strict";function n(t,e){var r,n,i=[0,0,0,0];for(r=0;r<4;++r)for(n=0;n<4;++n)i[n]+=t[4*r+n]*e[r];return i}e.exports=function(t,e){return n(t.projection,n(t.view,n(t.model,[e[0],e[1],e[2],1])))}},{}],823:[function(t,e,r){"use strict";var n,i,a=t("gl-plot3d"),o=t("webgl-context"),s=t("has-passive-events"),l=t("../../registry"),c=t("../../lib"),u=t("../../plots/cartesian/axes"),f=t("../../components/fx"),h=t("../../lib/str2rgbarray"),d=t("../../lib/show_no_webgl_msg"),p=t("./camera"),m=t("./project"),v=t("./layout/convert"),g=t("./layout/spikes"),y=t("./layout/tick_marks");function b(t,e,r,l){var h={canvas:r,gl:l,container:t.container,axes:t.axesOptions,spikes:t.spikeOptions,pickRadius:10,snapToData:!0,autoScale:!0,autoBounds:!1};if(t.staticMode){if(!(i||(n=document.createElement("canvas"),i=o({canvas:n,preserveDrawingBuffer:!0,premultipliedAlpha:!0,antialias:!0}))))throw new Error("error creating static canvas/context for image server");h.pixelRatio=t.pixelRatio,h.gl=i,h.canvas=n}try{t.glplot=a(h)}catch(e){d(t)}var v=function(t){if(!1!==t.fullSceneLayout.dragmode){var e={};e[t.id+".camera"]=A(t.camera),t.saveCamera(t.graphDiv.layout),t.graphDiv.emit("plotly_relayout",e)}};if(t.glplot.canvas.addEventListener("mouseup",v.bind(null,t)),t.glplot.canvas.addEventListener("wheel",v.bind(null,t),!!s&&{passive:!1}),t.staticMode||t.glplot.canvas.addEventListener("webglcontextlost",function(t){c.warn("Lost WebGL context."),t.preventDefault()}),!t.camera){var g=t.fullSceneLayout.camera;t.camera=p(t.container,{center:[g.center.x,g.center.y,g.center.z],eye:[g.eye.x,g.eye.y,g.eye.z],up:[g.up.x,g.up.y,g.up.z],zoomMin:.1,zoomMax:100,mode:"orbit"})}return t.glplot.camera=t.camera,t.glplot.oncontextloss=function(){t.recoverContext()},t.glplot.onrender=function(t){var e,r=t.svgContainer,n=t.container.getBoundingClientRect(),i=n.width,a=n.height;r.setAttributeNS(null,"viewBox","0 0 "+i+" "+a),r.setAttributeNS(null,"width",i),r.setAttributeNS(null,"height",a),y(t),t.glplot.axes.update(t.axesOptions);for(var o,s=Object.keys(t.traces),l=null,c=t.glplot.selection,h=0;h<s.length;++h)"skip"!==(e=t.traces[s[h]]).data.hoverinfo&&e.handlePick(c)&&(l=e),e.setContourLevels&&e.setContourLevels();function d(e,r){var n=t.fullSceneLayout[e];return u.tickText(n,n.d2l(r),"hover").text}if(null!==l){var p=m(t.glplot.cameraParams,c.dataCoordinate);e=l.data;var v=c.index,g=f.castHoverinfo(e,t.fullLayout,v),b=d("xaxis",c.traceCoordinate[0]),x=d("yaxis",c.traceCoordinate[1]),_=d("zaxis",c.traceCoordinate[2]);if("all"!==g){var w=g.split("+");-1===w.indexOf("x")&&(b=void 0),-1===w.indexOf("y")&&(x=void 0),-1===w.indexOf("z")&&(_=void 0),-1===w.indexOf("text")&&(c.textLabel=void 0),-1===w.indexOf("name")&&(l.name=void 0)}t.fullSceneLayout.hovermode&&f.loneHover({x:(.5+.5*p[0]/p[3])*i,y:(.5-.5*p[1]/p[3])*a,xLabel:b,yLabel:x,zLabel:_,text:c.textLabel,name:l.name,color:f.castHoverOption(e,v,"bgcolor")||l.color,borderColor:f.castHoverOption(e,v,"bordercolor"),fontFamily:f.castHoverOption(e,v,"font.family"),fontSize:f.castHoverOption(e,v,"font.size"),fontColor:f.castHoverOption(e,v,"font.color")},{container:r,gd:t.graphDiv});var M={x:c.traceCoordinate[0],y:c.traceCoordinate[1],z:c.traceCoordinate[2],data:e._input,fullData:e,curveNumber:e.index,pointNumber:v};f.appendArrayPointValue(M,e,v);var k={points:[M]};c.buttons&&c.distance<5?t.graphDiv.emit("plotly_click",k):t.graphDiv.emit("plotly_hover",k),o=k}else f.loneUnhover(r),t.graphDiv.emit("plotly_unhover",o);t.drawAnnotations(t)}.bind(null,t),t.traces={},!0}function x(t,e){var r=document.createElement("div"),n=t.container;this.graphDiv=t.graphDiv;var i=document.createElementNS("http://www.w3.org/2000/svg","svg");i.style.position="absolute",i.style.top=i.style.left="0px",i.style.width=i.style.height="100%",i.style["z-index"]=20,i.style["pointer-events"]="none",r.appendChild(i),this.svgContainer=i,r.id=t.id,r.style.position="absolute",r.style.top=r.style.left="0px",r.style.width=r.style.height="100%",n.appendChild(r),this.fullLayout=e,this.id=t.id||"scene",this.fullSceneLayout=e[this.id],this.plotArgs=[[],{},{}],this.axesOptions=v(e[this.id]),this.spikeOptions=g(e[this.id]),this.container=r,this.staticMode=!!t.staticPlot,this.pixelRatio=t.plotGlPixelRatio||2,this.dataScale=[1,1,1],this.contourLevels=[[],[],[]],this.convertAnnotations=l.getComponentMethod("annotations3d","convert"),this.drawAnnotations=l.getComponentMethod("annotations3d","draw"),b(this)}var _=x.prototype;_.recoverContext=function(){var t=this,e=this.glplot.gl,r=this.glplot.canvas;this.glplot.dispose(),requestAnimationFrame(function n(){e.isContextLost()?requestAnimationFrame(n):b(t,t.fullLayout,r,e)?t.plot.apply(t,t.plotArgs):c.error("Catastrophic and unrecoverable WebGL error. Context lost.")})};var w=["xaxis","yaxis","zaxis"];function M(t,e,r,n,i,a){var o;if(!Array.isArray(e))return i[0][n]=Math.min(i[0][n],0),void(i[1][n]=Math.max(i[1][n],r-1));for(var s=0;s<(r||e.length);++s)if(Array.isArray(e[s]))for(var l=0;l<e[s].length;++l)o=t.d2l(e[s][l],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o));else o=t.d2l(e[s],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o))}function k(t,e,r){var n=t.fullSceneLayout;M(n.xaxis,e.x,e._xlength,0,r,e.xcalendar),M(n.yaxis,e.y,e._ylength,1,r,e.ycalendar),M(n.zaxis,e.z,e._zlength,2,r,e.zcalendar)}function A(t){return{up:{x:t.up[0],y:t.up[1],z:t.up[2]},center:{x:t.center[0],y:t.center[1],z:t.center[2]},eye:{x:t.eye[0],y:t.eye[1],z:t.eye[2]}}}_.plot=function(t,e,r){if(this.plotArgs=[t,e,r],!this.glplot.contextLost){var n,i,a,o,s,l,c=e[this.id],u=r[this.id];c.bgcolor?this.glplot.clearColor=h(c.bgcolor):this.glplot.clearColor=[0,0,0,0],this.glplot.snapToData=!0,this.fullLayout=e,this.fullSceneLayout=c,this.glplotLayout=c,this.axesOptions.merge(c),this.spikeOptions.merge(c),this.setCamera(c.camera),this.updateFx(c.dragmode,c.hovermode),this.glplot.update({}),this.setConvert(s),t?Array.isArray(t)||(t=[t]):t=[];var f=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(a=0;a<t.length;++a)!0===(n=t[a]).visible&&k(this,n,f);var d=[1,1,1];for(o=0;o<3;++o)f[0][o]>f[1][o]?d[o]=1:f[1][o]===f[0][o]?d[o]=1:d[o]=1/(f[1][o]-f[0][o]);for(this.dataScale=d,this.convertAnnotations(this),a=0;a<t.length;++a)!0===(n=t[a]).visible&&((i=this.traces[n.uid])?i.update(n):(i=n._module.plot(this,n),this.traces[n.uid]=i),i.name=n.name);var p=Object.keys(this.traces);t:for(a=0;a<p.length;++a){for(o=0;o<t.length;++o)if(t[o].uid===p[a]&&!0===t[o].visible)continue t;(i=this.traces[p[a]]).dispose(),delete this.traces[p[a]]}this.glplot.objects.sort(function(t,e){return t._trace.data.index-e._trace.data.index});var m=[[0,0,0],[0,0,0]],v=[],g={};for(a=0;a<3;++a){if((l=(s=c[w[a]]).type)in g?(g[l].acc*=d[a],g[l].count+=1):g[l]={acc:d[a],count:1},s.autorange){m[0][a]=1/0,m[1][a]=-1/0;var y=this.glplot.objects,b=this.fullSceneLayout.annotations||[],x=s._name.charAt(0);for(o=0;o<y.length;o++){var _=y[o].bounds;m[0][a]=Math.min(m[0][a],_[0][a]/d[a]),m[1][a]=Math.max(m[1][a],_[1][a]/d[a])}for(o=0;o<b.length;o++){var M=b[o];if(M.visible){var A=s.r2l(M[x]);m[0][a]=Math.min(m[0][a],A),m[1][a]=Math.max(m[1][a],A)}}if("rangemode"in s&&"tozero"===s.rangemode&&(m[0][a]=Math.min(m[0][a],0),m[1][a]=Math.max(m[1][a],0)),m[0][a]>m[1][a])m[0][a]=-1,m[1][a]=1;else{var T=m[1][a]-m[0][a];m[0][a]-=T/32,m[1][a]+=T/32}}else{var E=s.range;m[0][a]=s.r2l(E[0]),m[1][a]=s.r2l(E[1])}m[0][a]===m[1][a]&&(m[0][a]-=1,m[1][a]+=1),v[a]=m[1][a]-m[0][a],this.glplot.bounds[0][a]=m[0][a]*d[a],this.glplot.bounds[1][a]=m[1][a]*d[a]}var S=[1,1,1];for(a=0;a<3;++a){var L=g[l=(s=c[w[a]]).type];S[a]=Math.pow(L.acc,1/L.count)/d[a]}var C;if("auto"===c.aspectmode)C=Math.max.apply(null,S)/Math.min.apply(null,S)<=4?S:[1,1,1];else if("cube"===c.aspectmode)C=[1,1,1];else if("data"===c.aspectmode)C=S;else{if("manual"!==c.aspectmode)throw new Error("scene.js aspectRatio was not one of the enumerated types");var P=c.aspectratio;C=[P.x,P.y,P.z]}c.aspectratio.x=u.aspectratio.x=C[0],c.aspectratio.y=u.aspectratio.y=C[1],c.aspectratio.z=u.aspectratio.z=C[2],this.glplot.aspect=C;var z=c.domain||null,O=e._size||null;if(z&&O){var D=this.container.style;D.position="absolute",D.left=O.l+z.x[0]*O.w+"px",D.top=O.t+(1-z.y[1])*O.h+"px",D.width=O.w*(z.x[1]-z.x[0])+"px",D.height=O.h*(z.y[1]-z.y[0])+"px"}this.glplot.redraw()}},_.destroy=function(){this.glplot&&(this.camera.mouseListener.enabled=!1,this.container.removeEventListener("wheel",this.camera.wheelListener),this.camera=this.glplot.camera=null,this.glplot.dispose(),this.container.parentNode.removeChild(this.container),this.glplot=null)},_.getCamera=function(){return this.glplot.camera.view.recalcMatrix(this.camera.view.lastT()),A(this.glplot.camera)},_.setCamera=function(t){var e;this.glplot.camera.lookAt.apply(this,[[(e=t).eye.x,e.eye.y,e.eye.z],[e.center.x,e.center.y,e.center.z],[e.up.x,e.up.y,e.up.z]])},_.saveCamera=function(t){var e=this.getCamera(),r=c.nestedProperty(t,this.id+".camera"),n=r.get(),i=!1;function a(t,e,r,n){var i=["up","center","eye"],a=["x","y","z"];return e[i[r]]&&t[i[r]][a[n]]===e[i[r]][a[n]]}if(void 0===n)i=!0;else for(var 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e=t._subplots.mapbox,r=0;r<e.length;r++){t[e[r]]._subplot.updateFx(t)}}},{"../../constants/xmlns_namespaces":704,"../../lib":724,"../../plots/get_data":807,"./constants":825,"./layout_attributes":829,"./layout_defaults":830,"./mapbox":831,"mapbox-gl":315}],828:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./convert_text_opts");function a(t,e){this.mapbox=t,this.map=t.map,this.uid=t.uid+"-layer"+e,this.idSource=this.uid+"-source",this.idLayer=this.uid+"-layer",this.sourceType=null,this.source=null,this.layerType=null,this.below=null,this.visible=!1}var o=a.prototype;function s(t){var e=t.source;return n.isPlainObject(e)||"string"==typeof e&&e.length>0}o.update=function(t){this.visible?this.needsNewSource(t)?(this.updateLayer(t),this.updateSource(t)):this.needsNewLayer(t)&&this.updateLayer(t):(this.updateSource(t),this.updateLayer(t)),this.updateStyle(t),this.visible=s(t)},o.needsNewSource=function(t){return this.sourceType!==t.sourcetype||this.source!==t.source||this.layerType!==t.type},o.needsNewLayer=function(t){return this.layerType!==t.type||this.below!==t.below},o.updateSource=function(t){var e=this.map;if(e.getSource(this.idSource)&&e.removeSource(this.idSource),this.sourceType=t.sourcetype,this.source=t.source,s(t)){var r=function(t){var e,r=t.sourcetype,n=t.source,i={type:r};"geojson"===r?e="data":"vector"===r&&(e="string"==typeof n?"url":"tiles");return i[e]=n,i}(t);e.addSource(this.idSource,r)}},o.updateLayer=function(t){var e=this.map;if(e.getLayer(this.idLayer)&&e.removeLayer(this.idLayer),this.layerType=t.type,s(t)){e.addLayer({id:this.idLayer,source:this.idSource,"source-layer":t.sourcelayer||"",type:t.type},t.below);this.mapbox.setOptions(this.idLayer,"setLayoutProperty",{visibility:"visible"})}},o.updateStyle=function(t){var e=function(t){var e={},r={};switch(t.type){case"circle":n.extendFlat(r,{"circle-radius":t.circle.radius,"circle-color":t.color,"circle-opacity":t.opacity});break;case"line":n.extendFlat(r,{"line-width":t.line.width,"line-color":t.color,"line-opacity":t.opacity});break;case"fill":n.extendFlat(r,{"fill-color":t.color,"fill-outline-color":t.fill.outlinecolor,"fill-opacity":t.opacity});break;case"symbol":var a=t.symbol,o=i(a.textposition,a.iconsize);n.extendFlat(e,{"icon-image":a.icon+"-15","icon-size":a.iconsize/10,"text-field":a.text,"text-size":a.textfont.size,"text-anchor":o.anchor,"text-offset":o.offset}),n.extendFlat(r,{"icon-color":t.color,"text-color":a.textfont.color,"text-opacity":t.opacity})}return{layout:e,paint:r}}(t);s(t)&&(this.mapbox.setOptions(this.idLayer,"setLayoutProperty",e.layout),this.mapbox.setOptions(this.idLayer,"setPaintProperty",e.paint))},o.dispose=function(){var t=this.map;t.removeLayer(this.idLayer),t.removeSource(this.idSource)},e.exports=function(t,e,r){var n=new a(t,e);return n.update(r),n}},{"../../lib":724,"./convert_text_opts":826}],829:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/color").defaultLine,a=t("../domain_attributes"),o=t("../font_attributes"),s=t("../../traces/scatter/attributes").textposition,l=t("../../plot_api/edit_types").overrideAll,c=o({});c.family.dflt="Open Sans Regular, Arial Unicode MS 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n=t("mapbox-gl"),i=t("../../components/fx"),a=t("../../lib"),o=t("../../components/dragelement"),s=t("../cartesian/select"),l=t("./constants"),c=t("./layout_attributes"),u=t("./layers");function f(t){this.id=t.id,this.gd=t.gd,this.container=t.container,this.isStatic=t.staticPlot;var e=t.fullLayout;this.uid=e._uid+"-"+this.id,this.opts=e[this.id],this.div=null,this.xaxis=null,this.yaxis=null,this.createFramework(e),this.map=null,this.accessToken=null,this.styleObj=null,this.traceHash={},this.layerList=[]}var h=f.prototype;function d(t){var e=c.style.values,r=c.style.dflt,n={};return a.isPlainObject(t)?(n.id=t.id,n.style=t):"string"==typeof t?(n.id=t,n.style=-1!==e.indexOf(t)?p(t):t):(n.id=r,n.style=p(r)),n}function p(t){return l.styleUrlPrefix+t+"-"+l.styleUrlSuffix}function m(t){return[t.lon,t.lat]}e.exports=function(t){return new f(t)},h.plot=function(t,e,r){var n,i=this,a=i.opts=e[this.id];i.map&&a.accesstoken!==i.accessToken&&(i.map.remove(),i.map=null,i.styleObj=null,i.traceHash=[],i.layerList={}),n=i.map?new Promise(function(r,n){i.updateMap(t,e,r,n)}):new Promise(function(r,n){i.createMap(t,e,r,n)}),r.push(n)},h.createMap=function(t,e,r,o){var s=this,c=s.gd,u=s.opts,f=s.styleObj=d(u.style);s.accessToken=u.accesstoken;var h=s.map=new n.Map({container:s.div,style:f.style,center:m(u.center),zoom:u.zoom,bearing:u.bearing,pitch:u.pitch,interactive:!s.isStatic,preserveDrawingBuffer:s.isStatic,doubleClickZoom:!1,boxZoom:!1}),p=l.controlContainerClassName,v=s.div.getElementsByClassName(p)[0];function g(){i.loneUnhover(e._toppaper)}s.div.removeChild(v),h._canvas.canvas.style.left="0px",h._canvas.canvas.style.top="0px",s.rejectOnError(o),h.once("load",function(){s.updateData(t),s.updateLayout(e),s.resolveOnRender(r)}),s.isStatic||(h.on("moveend",function(t){if(s.map){var e=s.getView();if(u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,t.originalEvent){var r={};r[s.id]=a.extendFlat({},e),c.emit("plotly_relayout",r)}}}),h.on("mousemove",function(t){var e=s.div.getBoundingClientRect();t.clientX=t.point.x+e.left,t.clientY=t.point.y+e.top,t.target.getBoundingClientRect=function(){return e},s.xaxis.p2c=function(){return t.lngLat.lng},s.yaxis.p2c=function(){return t.lngLat.lat},i.hover(c,t,s.id)}),h.on("click",function(t){i.click(c,t.originalEvent)}),h.on("dragstart",g),h.on("zoomstart",g),h.on("dblclick",function(){var t=s.viewInitial;h.setCenter(m(t.center)),h.setZoom(t.zoom),h.setBearing(t.bearing),h.setPitch(t.pitch);var e=s.getView();u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,c.emit("plotly_doubleclick",null)}))},h.updateMap=function(t,e,r,n){var i=this,a=i.map;i.rejectOnError(n);var o=d(i.opts.style);i.styleObj.id!==o.id?(i.styleObj=o,a.setStyle(o.style),a.style.once("load",function(){i.traceHash={},i.updateData(t),i.updateLayout(e),i.resolveOnRender(r)})):(i.updateData(t),i.updateLayout(e),i.resolveOnRender(r))},h.updateData=function(t){var e,r,n,i,a=this.traceHash;for(n=0;n<t.length;n++){var o=t[n];(e=a[(r=o[0].trace).uid])?e.update(o):r._module&&(a[r.uid]=r._module.plot(this,o))}var s=Object.keys(a);t:for(n=0;n<s.length;n++){var l=s[n];for(i=0;i<t.length;i++)if(l===(r=t[i][0].trace).uid)continue t;(e=a[l]).dispose(),delete a[l]}},h.updateLayout=function(t){var e=this.map,r=this.opts;e.setCenter(m(r.center)),e.setZoom(r.zoom),e.setBearing(r.bearing),e.setPitch(r.pitch),this.updateLayers(),this.updateFramework(t),this.updateFx(t),this.map.resize()},h.resolveOnRender=function(t){var e=this.map;e.on("render",function r(){e.loaded()&&(e.off("render",r),t())})},h.rejectOnError=function(t){var e=this.map;function r(){t(new 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y=h.select(".legend-marks").selectAll("path.legend-mark").data(o);y.enter().append("path").classed("legend-mark",!0),y.attr({transform:function(t,e){return"translate("+[c/2,v(e)+c/2]+")"},d:function(t,e){var r,i,a,o=t.symbol;return a=3*(i=c),"line"===(r=o)?"M"+[[-i/2,-i/12],[i/2,-i/12],[i/2,i/12],[-i/2,i/12]]+"Z":-1!=n.svg.symbolTypes.indexOf(r)?n.svg.symbol().type(r).size(a)():n.svg.symbol().type("square").size(a)()},fill:function(t,e){return m(e)}}),y.exit().remove()}var b=n.svg.axis().scale(v).orient("right"),x=h.select("g.legend-axis").attr({transform:"translate("+[u?e.colorBandWidth:c,c/2]+")"}).call(b);return x.selectAll(".domain").style({fill:"none",stroke:"none"}),x.selectAll("line").style({fill:"none",stroke:u?e.textColor:"none"}),x.selectAll("text").style({fill:e.textColor,"font-size":e.fontSize}).text(function(t,e){return o[e].name}),r}return r.config=function(e){return arguments.length?(i(t,e),this):t},n.rebind(r,e,"on"),r},o.Legend.defaultConfig=function(t,e){return{data:["a","b","c"],legendConfig:{elements:[{symbol:"line",color:"red"},{symbol:"square",color:"yellow"},{symbol:"diamond",color:"limegreen"}],height:150,colorBandWidth:30,fontSize:12,container:"body",isContinuous:null,textColor:"grey",reverseOrder:!1}}},o.tooltipPanel=function(){var t,e,r,a={container:null,hasTick:!1,fontSize:12,color:"white",padding:5},s="tooltip-"+o.tooltipPanel.uid++,l=10,c=function(){var n=(t=a.container.selectAll("g."+s).data([0])).enter().append("g").classed(s,!0).style({"pointer-events":"none",display:"none"});return r=n.append("path").style({fill:"white","fill-opacity":.9}).attr({d:"M0 0"}),e=n.append("text").attr({dx:a.padding+l,dy:.3*+a.fontSize}),c};return c.text=function(i){var o=n.hsl(a.color).l,s=o>=.5?"#aaa":"white",u=o>=.5?"black":"white",f=i||"";e.style({fill:u,"font-size":a.fontSize+"px"}).text(f);var h=a.padding,d=e.node().getBBox(),p={fill:a.color,stroke:s,"stroke-width":"2px"},m=d.width+2*h+l,v=d.height+2*h;return r.attr({d:"M"+[[l,-v/2],[l,-v/4],[a.hasTick?0:l,0],[l,v/4],[l,v/2],[m,v/2],[m,-v/2]].join("L")+"Z"}).style(p),t.attr({transform:"translate("+[l,-v/2+2*h]+")"}),t.style({display:"block"}),c},c.move=function(e){if(t)return t.attr({transform:"translate("+[e[0],e[1]]+")"}).style({display:"block"}),c},c.hide=function(){if(t)return t.style({display:"none"}),c},c.show=function(){if(t)return t.style({display:"block"}),c},c.config=function(t){return i(a,t),c},c},o.tooltipPanel.uid=1,o.adapter={},o.adapter.plotly=function(){var t={convert:function(t,e){var r={};if(t.data&&(r.data=t.data.map(function(t,r){var n=i({},t);return[[n,["marker","color"],["color"]],[n,["marker","opacity"],["opacity"]],[n,["marker","line","color"],["strokeColor"]],[n,["marker","line","dash"],["strokeDash"]],[n,["marker","line","width"],["strokeSize"]],[n,["marker","symbol"],["dotType"]],[n,["marker","size"],["dotSize"]],[n,["marker","barWidth"],["barWidth"]],[n,["line","interpolation"],["lineInterpolation"]],[n,["showlegend"],["visibleInLegend"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e||delete n.marker,e&&delete n.groupId,e?("LinePlot"===n.geometry?(n.type="scatter",!0===n.dotVisible?(delete n.dotVisible,n.mode="lines+markers"):n.mode="lines"):"DotPlot"===n.geometry?(n.type="scatter",n.mode="markers"):"AreaChart"===n.geometry?n.type="area":"BarChart"===n.geometry&&(n.type="bar"),delete 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s=i({},t.layout);if([[s,["plot_bgcolor"],["backgroundColor"]],[s,["showlegend"],["showLegend"]],[s,["radialaxis"],["radialAxis"]],[s,["angularaxis"],["angularAxis"]],[s.angularaxis,["showline"],["gridLinesVisible"]],[s.angularaxis,["showticklabels"],["labelsVisible"]],[s.angularaxis,["nticks"],["ticksCount"]],[s.angularaxis,["tickorientation"],["tickOrientation"]],[s.angularaxis,["ticksuffix"],["ticksSuffix"]],[s.angularaxis,["range"],["domain"]],[s.angularaxis,["endpadding"],["endPadding"]],[s.radialaxis,["showline"],["gridLinesVisible"]],[s.radialaxis,["tickorientation"],["tickOrientation"]],[s.radialaxis,["ticksuffix"],["ticksSuffix"]],[s.radialaxis,["range"],["domain"]],[s.angularAxis,["showline"],["gridLinesVisible"]],[s.angularAxis,["showticklabels"],["labelsVisible"]],[s.angularAxis,["nticks"],["ticksCount"]],[s.angularAxis,["tickorientation"],["tickOrientation"]],[s.angularAxis,["ticksuffix"],["ticksSuffix"]],[s.angularAxis,["range"],["domain"]],[s.angularAxis,["endpadding"],["endPadding"]],[s.radialAxis,["showline"],["gridLinesVisible"]],[s.radialAxis,["tickorientation"],["tickOrientation"]],[s.radialAxis,["ticksuffix"],["ticksSuffix"]],[s.radialAxis,["range"],["domain"]],[s.font,["outlinecolor"],["outlineColor"]],[s.legend,["traceorder"],["reverseOrder"]],[s,["labeloffset"],["labelOffset"]],[s,["defaultcolorrange"],["defaultColorRange"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e?(void 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r=t._fullLayout,n="clip"+r._uid+e;this.clipIds.circle=n+"-circle",this.clipPaths.circle=r._clips.append("clipPath").attr("id",this.clipIds.circle),this.clipPaths.circle.append("path"),this.framework=r._polarlayer.append("g").attr("class",e),this.radialTickLayout=null,this.angularTickLayout=null}var E=T.prototype;function S(t,e,r){f.setConvert(t,r),t._min=e._min,t._max=e._max,t.setScale()}function L(t){var e=t.ticks+String(t.ticklen)+String(t.showticklabels);return"side"in t&&(e+=t.side),e}function C(t,e){if(z(e))return c.symbolFuncs[0](t);var r=t*Math.cos(x(e[0])),n=-t*Math.sin(x(e[0])),i=t*Math.cos(x(e[1])),a=-t*Math.sin(x(e[1]));return"M"+[r,n]+"A"+[t,t]+" "+(Math.abs(e[1]-e[0])<=180?[0,0,0]:[0,1,0])+" "+[i,a]}function P(t,e){return C(t,e)+(z(e)?"":"L0,0Z")}function z(t){return 360===Math.abs(t[1]-t[0])}function O(t,e,r){return e?(t.attr("display",null),t.attr(r)):t&&t.attr("display","none"),t}function D(t,e){return"translate("+t+","+e+")"}function I(t){return"rotate("+t+")"}function 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e,r,n,i,a=t[0],o=t[1]-a,s=w(a),l=s+o,c=Math.cos(x(s)),u=Math.sin(x(s)),f=Math.cos(x(l)),h=Math.sin(x(l));i=s<=90&&l>=90||s>90&&l>=450?1:u<=0&&h<=0?0:Math.max(u,h);e=s<=180&&l>=180||s>180&&l>=540?-1:c>=0&&f>=0?0:Math.min(c,f);r=s<=270&&l>=270||s>270&&l>=630?-1:u>=0&&h>=0?0:Math.min(u,h);n=l>=360?1:c<=0&&f<=0?0:Math.max(c,f);return[e,r,n,i]}(g),b=y[2]-y[0],_=y[3]-y[1],M=v/m,k=Math.abs(_/b);M>k?(s=m,p=(v-(u=m*k))/i.h/2,h=[a[0],a[1]],d=[o[0]+p,o[1]-p]):(u=v,p=(m-(s=v/k))/i.w/2,h=[a[0]+p,a[1]-p],d=[o[0],o[1]]),r.xLength2=s,r.yLength2=u,r.xDomain2=h,r.yDomain2=d;var A=r.xOffset2=i.l+i.w*h[0],T=r.yOffset2=i.t+i.h*(1-d[1]),E=r.radius=s/b,S=r.cx=A-E*y[0],L=r.cy=T+E*y[3],C=r.cxx=S-A,z=r.cyy=L-T;r.updateRadialAxis(t,e),r.updateRadialAxisTitle(t,e),r.updateAngularAxis(t,e);var O=r.radialAxis.range,I=O[1]-O[0],R=r.xaxis={type:"linear",_id:"x",range:[y[0]*I,y[2]*I],domain:h};f.setConvert(R,t),R.setScale();var 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r=this,i=r.gd,l=r.layers,u=r.radius,p=r.cx,m=r.cy,v=r.cxx,y=r.cyy,b=e.sector,w=A.angularDragBoxSize,T=d.makeDragger(l,"path","angulardrag","move"),E={element:T,gd:i};function S(t,e){return Math.atan2(y+w-e,t-v-w)}n.select(T).attr("d",function(t,e,r){var n,i,a,o=Math.abs(r[1]-r[0])<=180?0:1;function s(t,e){return[t*Math.cos(e),-t*Math.sin(e)]}function l(t,e,r){return"A"+[t,t]+" "+[0,o,r]+" "+s(t,e)}return z(r)?(n=0,a=2*Math.PI,i=Math.PI,"M"+s(t,n)+l(t,i,0)+l(t,a,0)+"ZM"+s(e,n)+l(e,i,1)+l(e,a,1)+"Z"):(n=x(r[0]),a=x(r[1]),"M"+s(t,n)+"L"+s(e,n)+l(e,a,0)+"L"+s(t,a)+l(t,n,1)+"Z")}(u,u+w,b)).attr("transform",D(p,m)).call(g,"move");var L,C,P,O,R,N,F=l.frontplot.select(".scatterlayer").selectAll(".trace"),j=F.selectAll(".point"),B=F.selectAll(".textpoint");function U(t,e){var a=S(L+t,C+e),u=_(a-N);O=P+u,l.frontplot.attr("transform",D(r.xOffset2,r.yOffset2)+I([-u,v,y])),r.clipPaths.circle.select("path").attr("transform",D(v,y)+I(u)),j.each(function(){var 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n={};n.attributes=t("./attributes"),n.layoutAttributes=t("./layout_attributes"),n.supplyDefaults=t("./defaults").supplyDefaults,n.supplyLayoutDefaults=t("./layout_defaults").supplyLayoutDefaults,n.calc=t("./calc"),n.setPositions=t("./set_positions").setPositions,n.plot=t("./plot").plot,n.style=t("./style"),n.hoverPoints=t("./hover").hoverPoints,n.selectPoints=t("./select"),n.moduleType="trace",n.name="box",n.basePlotModule=t("../../plots/cartesian"),n.categories=["cartesian","symbols","oriented","box-violin","showLegend"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"./attributes":877,"./calc":878,"./defaults":879,"./hover":880,"./layout_attributes":882,"./layout_defaults":883,"./plot":884,"./select":885,"./set_positions":886,"./style":887}],882:[function(t,e,r){"use 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.wdPos||0,h=a.bPosPxOffset||0,d=r.whiskerwidth||0,p=r.notched||!1,m=p?1-2*r.notchwidth:1;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.box").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","box").each(function(t){var e=t.pos,a=l.c2p(e+u,!0)+h,v=l.c2p(e+u-o,!0)+h,g=l.c2p(e+u+s,!0)+h,y=l.c2p(e+u-f,!0)+h,b=l.c2p(e+u+f,!0)+h,x=l.c2p(e+u-o*m,!0)+h,_=l.c2p(e+u+s*m,!0)+h,w=c.c2p(t.q1,!0),M=c.c2p(t.q3,!0),k=i.constrain(c.c2p(t.med,!0),Math.min(w,M)+1,Math.max(w,M)-1),A=c.c2p(!1===r.boxpoints?t.min:t.lf,!0),T=c.c2p(!1===r.boxpoints?t.max:t.uf,!0),E=c.c2p(t.ln,!0),S=c.c2p(t.un,!0);"h"===r.orientation?n.select(this).attr("d","M"+k+","+x+"V"+_+"M"+w+","+v+"V"+g+(p?"H"+E+"L"+k+","+_+"L"+S+","+g:"")+"H"+M+"V"+v+(p?"H"+S+"L"+k+","+x+"L"+E+","+v:"")+"ZM"+w+","+a+"H"+A+"M"+M+","+a+"H"+T+(0===d?"":"M"+A+","+y+"V"+b+"M"+T+","+y+"V"+b)):n.select(this).attr("d","M"+x+","+k+"H"+_+"M"+v+","+w+"H"+g+(p?"V"+E+"L"+_+","+k+"L"+g+","+S:"")+"V"+M+"H"+v+(p?"V"+S+"L"+x+","+k+"L"+v+","+E:"")+"ZM"+a+","+w+"V"+A+"M"+a+","+M+"V"+T+(0===d?"":"M"+y+","+A+"H"+b+"M"+y+","+T+"H"+b))})}function f(t,e,r,n){var u=e.x,f=e.y,h=n.bdPos,d=n.bPos,p=r.boxpoints||r.points;o=2e9,t.selectAll("g.points").data(function(t){return 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.bPosPxOffset||0;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.mean").data(i.identity).enter().append("path").attr("class","mean").style({fill:"none","vector-effect":"non-scaling-stroke"}).each(function(t){var e=l.c2p(t.pos+u,!0)+f,i=l.c2p(t.pos+u-o,!0)+f,a=l.c2p(t.pos+u+s,!0)+f,h=c.c2p(t.mean,!0),d=c.c2p(t.mean-t.sd,!0),p=c.c2p(t.mean+t.sd,!0);"h"===r.orientation?n.select(this).attr("d","M"+h+","+i+"V"+a+("sd"===r.boxmean?"m0,0L"+d+","+e+"L"+h+","+i+"L"+p+","+e+"Z":"")):n.select(this).attr("d","M"+i+","+h+"H"+a+("sd"===r.boxmean?"m0,0L"+e+","+d+"L"+i+","+h+"L"+e+","+p+"Z":""))})}e.exports={plot:function(t,e,r){var i=t._fullLayout,a=e.xaxis,o=e.yaxis;e.plot.select(".boxlayer").selectAll("g.trace.boxes").data(r).enter().append("g").attr("class","trace boxes").each(function(t){var e,r,s=t[0],l=s.t,c=s.trace,d=s.node3=n.select(this),p=i._numBoxes,m="group"===i.boxmode&&p>1,v=l.dPos*(1-i.boxgap)*(1-i.boxgroupgap)/(m?p:1),g=m?2*l.dPos*((l.num+.5)/p-.5)*(1-i.boxgap):0,y=v*c.whiskerwidth;!0!==c.visible||l.empty?n.select(this).remove():("h"===c.orientation?(e=o,r=a):(e=a,r=o),l.bPos=g,l.bdPos=v,l.wdPos=y,u(d,{pos:e,val:r},c,l),c.boxpoints&&f(d,{x:a,y:o},c,l),c.boxmean&&h(d,{pos:e,val:r},c,l))})},plotBoxAndWhiskers:u,plotPoints:f,plotBoxMean:h}},{"../../components/drawing":623,"../../lib":724,d3:128}],885:[function(t,e,r){"use strict";e.exports=function(t,e){var r,n,i=t.cd,a=t.xaxis,o=t.yaxis,s=[];if(!1===e)for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++)i[r].pts[n].selected=0;else for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++){var l=i[r].pts[n],c=a.c2p(l.x),u=o.c2p(l.y);e.contains([c,u])?(s.push({pointNumber:l.i,x:a.c2d(l.x),y:o.c2d(l.y)}),l.selected=1):l.selected=0}return s}},{}],886:[function(t,e,r){"use strict";var n=t("../../plots/cartesian/axes"),i=t("../../lib"),a=["v","h"];function o(t,e,r,a,o){var s,l,c,u=e.calcdata,f=e._fullLayout,h=[],d="violin"===t?"_numViolins":"_numBoxes";for(s=0;s<r.length;s++)for(c=u[r[s]],l=0;l<c.length;l++)h.push(c[l].pos);if(h.length){var p=i.distinctVals(h),m=p.minDiff/2;for(h.length===p.vals.length&&(f[d]=1),n.minDtick(a,p.minDiff,p.vals[0],!0),s=0;s<r.length;s++)(c=u[r[s]])[0].t.dPos=m;var v=(1-f[t+"gap"])*(1-f[t+"groupgap"])*m/f[d];n.expand(a,p.vals,{vpadminus:m+o[0]*v,vpadplus:m+o[1]*v})}}e.exports={setPositions:function(t,e){for(var r=t.calcdata,n=e.xaxis,i=e.yaxis,s=0;s<a.length;s++){for(var l=a[s],c="h"===l?i:n,u=[],f=0,h=0,d=0;d<r.length;d++){var p=r[d],m=p[0].t,v=p[0].trace;!0!==v.visible||"box"!==v.type||m.empty||v.orientation!==l||v.xaxis!==n._id||v.yaxis!==i._id||(u.push(d),!1!==v.boxpoints&&(f=Math.max(f,v.jitter-v.pointpos-1),h=Math.max(h,v.jitter+v.pointpos-1)))}o("box",t,u,c,[f,h])}},setPositionOffset:o}},{"../../lib":724,"../../plots/cartesian/axes":770}],887:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/color"),a=t("../../components/drawing");e.exports=function(t,e){var r=e?e[0].node3:n.select(t).selectAll("g.trace.boxes");r.style("opacity",function(t){return t[0].trace.opacity}),r.each(function(e){var r=n.select(this),o=e[0].trace,s=o.line.width;r.selectAll("path.box").style("stroke-width",s+"px").call(i.stroke,o.line.color).call(i.fill,o.fillcolor),r.selectAll("path.mean").style({"stroke-width":s,"stroke-dasharray":2*s+"px,"+s+"px"}).call(i.stroke,o.line.color);var l=r.selectAll("path.point");a.pointStyle(l,o,t),a.selectedPointStyle(l,o)})}},{"../../components/color":598,"../../components/drawing":623,d3:128}],888:[function(t,e,r){"use strict";var n=t("../../lib").extendFlat,i=t("../ohlc/attributes"),a=t("../box/attributes");function o(t){return{name:i.increasing.name,showlegend:i.increasing.showlegend,line:{color:n({},a.line.color,{dflt:t}),width:a.line.width,editType:"style"},fillcolor:a.fillcolor,editType:"style"}}e.exports={x:i.x,open:i.open,high:i.high,low:i.low,close:i.close,line:{width:n({},a.line.width,{}),editType:"style"},increasing:o(i.increasing.line.color.dflt),decreasing:o(i.decreasing.line.color.dflt),text:i.text,whiskerwidth:n({},a.whiskerwidth,{dflt:0})}},{"../../lib":724,"../box/attributes":877,"../ohlc/attributes":1006}],889:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../ohlc/ohlc_defaults"),a=t("../ohlc/direction_defaults"),o=t("../ohlc/helpers"),s=t("./attributes");function 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c=t[i],u=c.dim1,f=u.crossfilterDimensionIndex,h=c.canvasX,p=c.canvasY,g=c.dim2.crossfilterDimensionIndex,y=c.panelSizeX,b=c.panelSizeY,w=h+y;if(e||!V[f]||V[f][0]!==h||V[f][1]!==w){V[f]=[h,w];var M=q(f,g,h,p,y,b,u.crossfilterDimensionIndex,r||u.scatter?1:0,i,a,o);E.clearOnly=n,v(F,B,E,e?d.blockLineCount:C,C,M)}}},readPixel:function(t,e){return F.read({x:t,y:e,width:1,height:1,data:p}),p},readPixels:function(t,e,r,n){var i=new Uint8Array(4*r*n);return F.read({x:t,y:e,width:r,height:n,data:i}),i},destroy:function(){t.style["pointer-events"]="none",j.destroy()}}}},{"./constants":1017,glslify:253}],1021:[function(t,e,r){"use strict";var n=t("./lines"),i=t("./constants"),a=t("../../lib"),o=t("d3"),s=t("../../components/drawing"),l=t("../../lib/gup").keyFun,c=t("../../lib/gup").repeat,u=t("../../lib/gup").unwrap;function f(t){return!("visible"in t)||t.visible}function h(t){var e=t.range?t.range[0]:o.min(t.values),r=t.range?t.range[1]:o.max(t.values);return!isNaN(e)&&isFinite(e)||(e=0),!isNaN(r)&&isFinite(r)||(r=0),e===r&&(void 0===e?(e=0,r=1):0===e?(e-=1,r+=1):(e*=.9,r*=1.1)),[e,r]}function d(t,e){var r,n,i,a,o;for(r=0,i=1/0,a=(n=t.range())[0];r<n.length;r++){if((o=Math.abs(n[r]-e))>i)return a;i=o,a=n[r]}return n[n.length-1]}function p(t){return o.scale.linear().domain(h(t))}function m(t,e,r){var n=u(e),s=n.trace,l=n.lineColor,c=n.cscale,h=s.line,d=s.domain,m=s.dimensions,v=t.width,g=s.labelfont,y=s.tickfont,b=s.rangefont,x=a.extendDeep({},h,{color:l.map(p({values:l,range:[h.cmin,h.cmax]})),blockLineCount:i.blockLineCount,canvasOverdrag:i.overdrag*i.canvasPixelRatio}),_=Math.floor(v*(d.x[1]-d.x[0])),w=Math.floor(t.height*(d.y[1]-d.y[0])),M=t.margin||{l:80,r:80,t:100,b:80},k=_,A=w;return{key:r,colCount:m.filter(f).length,dimensions:m,tickDistance:i.tickDistance,unitToColor:function(t){var e=t.map(function(t){return t[0]}),r=t.map(function(t){return 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m[e.label]=(c||0)+1,{key:e.label+(c?"__"+c:""),label:e.label,tickFormat:e.tickformat,tickvals:e.tickvals,ticktext:e.ticktext,ordinal:!!e.tickvals,scatter:i.scatter||e.scatter,xIndex:n,crossfilterDimensionIndex:n,visibleIndex:e._index,height:r,values:e.values,paddedUnitValues:e.values.map(l).map(u),xScale:s,x:s(n),canvasX:s(n)*a,unitScale:function(t,e){return o.scale.linear().range([t-e,e])}(r,i.verticalPadding),domainScale:function(t,e,r){var n=h(r),i=r.ticktext;return r.tickvals?o.scale.ordinal().domain(r.tickvals.map(function(t,e){return function(r,n){if(e){var i=e[n];return null===i||void 0===i?t(r):i}return t(r)}}(o.format(r.tickformat),i))).range(r.tickvals.map(function(t){return(t-n[0])/(n[1]-n[0])}).map(function(r){return t-e+r*(e-(t-e))})):o.scale.linear().domain(n).range([t-e,e])}(r,i.verticalPadding,e),ordinalScale:function(t){var e=h(t);return t.tickvals&&o.scale.ordinal().domain(t.tickvals).range(t.tickvals.map(function(t){return(t-e[0])/(e[1]-e[0])}))}(e),domainToUnitScale:l,filter:e.constraintrange?e.constraintrange.map(l):[0,1],parent:d,model:t}}),d}function g(t){t.classed(i.cn.axisExtentText,!0).attr("text-anchor","middle").style("cursor","default").style("user-select","none")}e.exports=function(t,e,r,f,h,p){var y=!1,b=!0;var x=f.filter(function(t){return u(t).trace.visible}).map(m.bind(0,h)).map(v);r.each(function(t,e){return a.extendFlat(t,x[e])});var _=r.selectAll(".gl-canvas").each(function(t){t.viewModel=x[0],t.model=t.viewModel?t.viewModel.model:null}),w={renderers:[],dimensions:[]},M=null;_.filter(function(t){return t.pick}).style("pointer-events","auto").on("mousemove",function(t){if(b&&t.lineLayer&&p&&p.hover){var e=o.event,r=this.width,n=this.height,i=o.mouse(this),a=i[0],s=i[1];if(a<0||s<0||a>=r||s>=n)return;var l=t.lineLayer.readPixel(a,n-1-s),c=0!==l[3],u=c?l[2]+256*(l[1]+256*l[0]):null,f={x:a,y:s,clientX:e.clientX,clientY:e.clientY,dataIndex:t.model.key,curveNumber:u};u!==M&&(c?p.hover(f):p.unhover&&p.unhover(f),M=u)}}),_.style("opacity",function(t){return t.pick?.01:1}),e.style("background","rgba(255, 255, 255, 0)");var k=e.selectAll("."+i.cn.parcoords).data(x,l);k.exit().remove(),k.enter().append("g").classed(i.cn.parcoords,!0).attr("overflow","visible").style("box-sizing","content-box").style("position","absolute").style("left",0).style("overflow","visible").style("shape-rendering","crispEdges").style("pointer-events","none").call(function(t){var e=t.selectAll("defs").data(c,l);e.enter().append("defs");var r=e.selectAll("#"+i.id.filterBarPattern).data(c,l);r.enter().append("pattern").attr("id",i.id.filterBarPattern).attr("patternUnits","userSpaceOnUse"),r.attr("x",-i.bar.width).attr("width",i.bar.capturewidth).attr("height",function(t){return t.model.height});var n=r.selectAll("rect").data(c,l);n.enter().append("rect").attr("shape-rendering","crispEdges"),n.attr("height",function(t){return t.model.height}).attr("width",i.bar.width).attr("x",i.bar.width/2).attr("fill",i.bar.fillcolor).attr("fill-opacity",i.bar.fillopacity).attr("stroke",i.bar.strokecolor).attr("stroke-opacity",i.bar.strokeopacity).attr("stroke-width",i.bar.strokewidth)}),k.attr("width",function(t){return t.model.width+t.model.pad.l+t.model.pad.r}).attr("height",function(t){return t.model.height+t.model.pad.t+t.model.pad.b}).attr("transform",function(t){return"translate("+t.model.translateX+","+t.model.translateY+")"});var A=k.selectAll("."+i.cn.parcoordsControlView).data(c,l);A.enter().append("g").classed(i.cn.parcoordsControlView,!0).style("box-sizing","content-box"),A.attr("transform",function(t){return"translate("+t.model.pad.l+","+t.model.pad.t+")"});var T=A.selectAll("."+i.cn.yAxis).data(function(t){return t.dimensions},l);function E(t){return t.dimensions.some(function(t){return 0!==t.filter[0]||1!==t.filter[1]})}function S(t,e){return(i.scatter?function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=i,o=0;o<i;o++)for(var s=0;s<i;s++){var l=r[s+o*i]||(r[s+o*i]={}),c=n[s],u=n[s+1];l.dim1=n[o+1],l.dim2=u,l.canvasX=c.canvasX,l.panelSizeX=u.canvasX-c.canvasX,l.panelSizeY=e.model.canvasHeight/a,l.y=o*l.panelSizeY,l.canvasY=e.model.canvasHeight-l.y-l.panelSizeY}}:function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=0;a<1;a++)for(var o=0;o<i;o++){var s=r[o+a*i]||(r[o+a*i]={}),l=n[o],c=n[o+1];s.dim1=l,s.dim2=c,s.canvasX=l.canvasX,s.panelSizeX=c.canvasX-l.canvasX,s.panelSizeY=e.model.canvasHeight/1,s.y=a*s.panelSizeY,s.canvasY=e.model.canvasHeight-s.y-s.panelSizeY}})(t,e)}T.enter().append("g").classed(i.cn.yAxis,!0).each(function(t){w.dimensions.push(t)}),A.each(function(t){S(T,t)}),_.filter(function(t){return!!t.viewModel}).each(function(t){t.lineLayer=n(this,t,i.scatter),t.viewModel[t.key]=t.lineLayer,w.renderers.push(function(){t.lineLayer.render(t.viewModel.panels,!0)}),t.lineLayer.render(t.viewModel.panels,!t.context)}),T.attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),T.call(o.behavior.drag().origin(function(t){return t}).on("drag",function(t){var e=t.parent;b=!1,y||(t.x=Math.max(-i.overdrag,Math.min(t.model.width+i.overdrag,o.event.x)),t.canvasX=t.x*t.model.canvasPixelRatio,T.sort(function(t,e){return t.x-e.x}).each(function(e,r){e.xIndex=r,e.x=t===e?e.x:e.xScale(e.xIndex),e.canvasX=e.x*e.model.canvasPixelRatio}),S(T,e),T.filter(function(e){return 0!==Math.abs(t.xIndex-e.xIndex)}).attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),o.select(this).attr("transform","translate("+t.x+", 0)"),T.each(function(r,n,i){i===t.parent.key&&(e.dimensions[n]=r)}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer.render&&e.focusLayer.render(e.panels))}).on("dragend",function(t){var e=t.parent;y?"ending"===y&&(y=!1):(t.x=t.xScale(t.xIndex),t.canvasX=t.x*t.model.canvasPixelRatio,S(T,e),o.select(this).attr("transform",function(t){return"translate("+t.x+", 0)"}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer&&e.focusLayer.render(e.panels),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,p&&p.axesMoved&&p.axesMoved(e.key,e.dimensions.map(function(t){return t.crossfilterDimensionIndex})))})),T.exit().remove();var L=T.selectAll("."+i.cn.axisOverlays).data(c,l);L.enter().append("g").classed(i.cn.axisOverlays,!0),L.selectAll("."+i.cn.axis).remove();var C=L.selectAll("."+i.cn.axis).data(c,l);C.enter().append("g").classed(i.cn.axis,!0),C.each(function(t){var e=t.model.height/t.model.tickDistance,r=t.domainScale,n=r.domain();o.select(this).call(o.svg.axis().orient("left").tickSize(4).outerTickSize(2).ticks(e,t.tickFormat).tickValues(t.ordinal?n:null).tickFormat(t.ordinal?function(t){return t}:null).scale(r)),s.font(C.selectAll("text"),t.model.tickFont)}),C.selectAll(".domain, .tick>line").attr("fill","none").attr("stroke","black").attr("stroke-opacity",.25).attr("stroke-width","1px"),C.selectAll("text").style("text-shadow","1px 1px 1px #fff, -1px -1px 1px #fff, 1px -1px 1px #fff, -1px 1px 1px #fff").style("cursor","default").style("user-select","none");var P=L.selectAll("."+i.cn.axisHeading).data(c,l);P.enter().append("g").classed(i.cn.axisHeading,!0);var z=P.selectAll("."+i.cn.axisTitle).data(c,l);z.enter().append("text").classed(i.cn.axisTitle,!0).attr("text-anchor","middle").style("cursor","ew-resize").style("user-select","none").style("pointer-events","auto"),z.attr("transform","translate(0,"+-i.axisTitleOffset+")").text(function(t){return t.label}).each(function(t){s.font(z,t.model.labelFont)});var O=L.selectAll("."+i.cn.axisExtent).data(c,l);O.enter().append("g").classed(i.cn.axisExtent,!0);var D=O.selectAll("."+i.cn.axisExtentTop).data(c,l);D.enter().append("g").classed(i.cn.axisExtentTop,!0),D.attr("transform","translate(0,"+-i.axisExtentOffset+")");var I=D.selectAll("."+i.cn.axisExtentTopText).data(c,l);function R(t){return t.ordinal?function(){return""}:o.format(t.tickFormat)}I.enter().append("text").classed(i.cn.axisExtentTopText,!0).call(g),I.text(function(t){return R(t)(t.domainScale.domain().slice(-1)[0])}).each(function(t){s.font(I,t.model.rangeFont)});var N=O.selectAll("."+i.cn.axisExtentBottom).data(c,l);N.enter().append("g").classed(i.cn.axisExtentBottom,!0),N.attr("transform",function(t){return"translate(0,"+(t.model.height+i.axisExtentOffset)+")"});var F=N.selectAll("."+i.cn.axisExtentBottomText).data(c,l);F.enter().append("text").classed(i.cn.axisExtentBottomText,!0).attr("dy","0.75em").call(g),F.text(function(t){return R(t)(t.domainScale.domain()[0])}).each(function(t){s.font(F,t.model.rangeFont)});var j=L.selectAll("."+i.cn.axisBrush).data(c,l),B=j.enter().append("g").classed(i.cn.axisBrush,!0);j.each(function(t){t.brush||(t.brush=o.svg.brush().y(t.unitScale).on("brushstart",q).on("brush",H).on("brushend",G),0===t.filter[0]&&1===t.filter[1]||t.brush.extent(t.filter),o.select(this).call(t.brush))}),B.selectAll("rect").attr("x",-i.bar.capturewidth/2).attr("width",i.bar.capturewidth),B.selectAll("rect.extent").attr("fill","url(#"+i.id.filterBarPattern+")").style("cursor","ns-resize").filter(function(t){return 0===t.filter[0]&&1===t.filter[1]}).attr("y",-100),B.selectAll(".resize rect").attr("height",i.bar.handleheight).attr("opacity",0).style("visibility","visible"),B.selectAll(".resize.n rect").style("cursor","n-resize").attr("y",i.bar.handleoverlap-i.bar.handleheight),B.selectAll(".resize.s rect").style("cursor","s-resize").attr("y",i.bar.handleoverlap);var U=!1,V=!1;function q(){U=!0,y=!0}function H(t){b=!1;var e=t.parent,r=t.brush.extent(),n=e.dimensions,i=n[t.xIndex].filter,a=U&&r[0]===r[1];a&&(t.brush.clear(),o.select(this).select("rect.extent").attr("y",-100));var s=a?[0,1]:r.slice();if(s[0]!==i[0]||s[1]!==i[1]){n[t.xIndex].filter=s,e.focusLayer&&e.focusLayer.render(e.panels,!0);var l=E(e);!V&&l?(e.contextLayer&&e.contextLayer.render(e.panels,!0),V=!0):V&&!l&&(e.contextLayer&&e.contextLayer.render(e.panels,!0,!0),V=!1)}U=!1}function G(t){var e=t.parent,r=t.brush.extent(),n=r[0]===r[1],i=e.dimensions[t.xIndex].filter;if(!n&&t.ordinal&&(i[0]=d(t.ordinalScale,i[0]),i[1]=d(t.ordinalScale,i[1]),i[0]===i[1]&&(i[0]=Math.max(0,i[0]-.05),i[1]=Math.min(1,i[1]+.05)),o.select(this).transition().duration(150).call(t.brush.extent(i)),e.focusLayer.render(e.panels,!0)),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,y="ending",p&&p.filterChanged){var a=t.domainToUnitScale.invert,s=i.map(a);p.filterChanged(e.key,t.visibleIndex,s)}}return w}},{"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1017,"./lines":1020,d3:128}],1022:[function(t,e,r){(function(r){"use strict";var n=t("./parcoords"),i=t("regl");e.exports=function(t,e){var a=t._fullLayout,o=a._toppaper,s=a._paperdiv,l=a._glcontainer;a._glcanvas.each(function(e){e.regl||(e.regl=i({canvas:this,attributes:{antialias:!e.pick,preserveDrawingBuffer:!0},pixelRatio:t._context.plotGlPixelRatio||r.devicePixelRatio}))});var c={},u={},f=a._size;e.forEach(function(e,r){c[r]=t.data[r].dimensions,u[r]=t.data[r].dimensions.slice()});n(s,o,l,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{filterChanged:function(e,r,n){var i=u[e][r],a=i.constraintrange;a&&2===a.length||(a=i.constraintrange=[]),a[0]=n[0],a[1]=n[1],t.emit("plotly_restyle")},hover:function(e){t.emit("plotly_hover",e)},unhover:function(e){t.emit("plotly_unhover",e)},axesMoved:function(e,r){function n(t){return!("visible"in t)||t.visible}function i(t,e,r){var n=e.indexOf(r),i=t.indexOf(n);return-1===i&&(i+=e.length),i}var a=function(t){return function(e,n){return i(r,t,e)-i(r,t,n)}}(u[e].filter(n));c[e].sort(a),u[e].filter(function(t){return!n(t)}).sort(function(t){return u[e].indexOf(t)}).forEach(function(t){c[e].splice(c[e].indexOf(t),1),c[e].splice(u[e].indexOf(t),0,t)}),t.emit("plotly_restyle")}})}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof 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n=t("../../components/color/attributes"),i=t("../../plots/font_attributes"),a=t("../../plots/attributes"),o=t("../../plots/domain_attributes"),s=t("../../lib/extend").extendFlat,l=i({editType:"calc",colorEditType:"style"});e.exports={labels:{valType:"data_array",editType:"calc"},label0:{valType:"number",dflt:0,editType:"calc"},dlabel:{valType:"number",dflt:1,editType:"calc"},values:{valType:"data_array",editType:"calc"},marker:{colors:{valType:"data_array",editType:"calc"},line:{color:{valType:"color",dflt:n.defaultLine,arrayOk:!0,editType:"style"},width:{valType:"number",min:0,dflt:0,arrayOk:!0,editType:"style"},editType:"calc"},editType:"calc"},text:{valType:"data_array",editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},scalegroup:{valType:"string",dflt:"",editType:"calc"},textinfo:{valType:"flaglist",flags:["label","text","value","percent"],extras:["none"],editType:"calc"},hoverinfo:s({},a.hoverinfo,{flags:["label","text","value","percent","name"]}),textposition:{valType:"enumerated",values:["inside","outside","auto","none"],dflt:"auto",arrayOk:!0,editType:"calc"},textfont:s({},l,{}),insidetextfont:s({},l,{}),outsidetextfont:s({},l,{}),domain:o({name:"pie",trace:!0,editType:"calc"}),hole:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},sort:{valType:"boolean",dflt:!0,editType:"calc"},direction:{valType:"enumerated",values:["clockwise","counterclockwise"],dflt:"counterclockwise",editType:"calc"},rotation:{valType:"number",min:-360,max:360,dflt:0,editType:"calc"},pull:{valType:"number",min:0,max:1,dflt:0,arrayOk:!0,editType:"calc"}}},{"../../components/color/attributes":597,"../../lib/extend":713,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1024:[function(t,e,r){"use 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r,n,u,f,h,d=e.values,p=Array.isArray(d)&&d.length,m=e.labels,v=e.marker.colors||[],g=[],y=t._fullLayout,b=y.colorway,x=y._piecolormap,_={},w=0,M=y.hiddenlabels||[];if(y._piecolorway||b===o.defaults||(y._piecolorway=c(b)),e.dlabel)for(m=new Array(d.length),r=0;r<d.length;r++)m[r]=String(e.label0+r*e.dlabel);function k(t,e){return!!t&&(!!(t=a(t)).isValid()&&(t=o.addOpacity(t,t.getAlpha()),x[e]||(x[e]=t),t))}var A=(p?d:m).length;for(r=0;r<A;r++){if(p){if(n=d[r],!i(n))continue;if((n=+n)<0)continue}else n=1;void 0!==(u=m[r])&&""!==u||(u=r);var T=_[u=String(u)];void 0===T?(_[u]=g.length,(f=-1!==M.indexOf(u))||(w+=n),g.push({v:n,label:u,color:k(v[r]),i:r,pts:[r],hidden:f})):((h=g[T]).v+=n,h.pts.push(r),h.hidden||(w+=n),!1===h.color&&v[r]&&(h.color=k(v[r],u)))}for(e.sort&&g.sort(function(t,e){return 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void(e.visible=!1);o("label0"),o("dlabel")}o("marker.line.width")&&o("marker.line.color"),o("marker.colors"),o("scalegroup");var u=o("text"),f=o("textinfo",Array.isArray(u)?"text+percent":"percent");if(o("hovertext"),f&&"none"!==f){var h=o("textposition"),d=Array.isArray(h)||"auto"===h,p=d||"inside"===h,m=d||"outside"===h;if(p||m){var v=s(o,"textfont",a.font);p&&s(o,"insidetextfont",v),m&&s(o,"outsidetextfont",v)}}o("domain.x"),o("domain.y"),o("hole"),o("sort"),o("direction"),o("rotation"),o("pull")}},{"../../lib":724,"./attributes":1023}],1027:[function(t,e,r){"use strict";var n=t("../../components/fx/helpers").appendArrayMultiPointValues;e.exports=function(t,e){var r={curveNumber:e.index,pointNumbers:t.pts,data:e._input,fullData:e,label:t.label,color:t.color,value:t.v,v:t.v};return 1===t.pts.length&&(r.pointNumber=r.i=t.pts[0]),n(r,e,t.pts),r}},{"../../components/fx/helpers":637}],1028:[function(t,e,r){"use strict";var n=t("../../lib");r.formatPiePercent=function(t,e){var r=(100*t).toPrecision(3);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)+"%"},r.formatPieValue=function(t,e){var r=t.toPrecision(10);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)},r.getFirstFilled=function(t,e){if(Array.isArray(t))for(var r=0;r<e.length;r++){var n=t[e[r]];if(n||0===n)return n}},r.castOption=function(t,e){return Array.isArray(t)?r.getFirstFilled(t,e):t||void 0}},{"../../lib":724}],1029:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.supplyLayoutDefaults=t("./layout_defaults"),n.layoutAttributes=t("./layout_attributes"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.styleOne=t("./style_one"),n.moduleType="trace",n.name="pie",n.basePlotModule=t("./base_plot"),n.categories=["pie","showLegend"],n.meta={},e.exports=n},{"./attributes":1023,"./base_plot":1024,"./calc":1025,"./defaults":1026,"./layout_attributes":1030,"./layout_defaults":1031,"./plot":1032,"./style":1033,"./style_one":1034}],1030:[function(t,e,r){"use strict";e.exports={hiddenlabels:{valType:"data_array",editType:"calc"}}},{}],1031:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e){var r,a;r="hiddenlabels",n.coerce(t,e,i,r,a)}},{"../../lib":724,"./layout_attributes":1030}],1032:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/fx"),a=t("../../components/color"),o=t("../../components/drawing"),s=t("../../lib/svg_text_utils"),l=t("./helpers"),c=t("./event_data");function u(t,e){if(t.v===e.vTotal&&!e.trace.hole)return 1;var r=Math.PI*Math.min(t.v/e.vTotal,.5);return Math.min(1/(1+1/Math.sin(r)),(1-e.trace.hole)/2)}function f(t,e){var r=e.pxmid[0],n=e.pxmid[1],i=t.width/2,a=t.height/2;return r<0&&(i*=-1),n<0&&(a*=-1),{scale:1,rCenter:1,rotate:0,x:i+Math.abs(a)*(i>0?1:-1)/2,y:a/(1+r*r/(n*n)),outside:!0}}e.exports=function(t,e){var r=t._fullLayout;!function(t,e){var r,n,i,a,o,s,l,c,u,f=[];for(i=0;i<t.length;i++){if(o=t[i][0],s=o.trace,r=e.w*(s.domain.x[1]-s.domain.x[0]),n=e.h*(s.domain.y[1]-s.domain.y[0]),l=s.pull,Array.isArray(l))for(l=0,a=0;a<s.pull.length;a++)s.pull[a]>l&&(l=s.pull[a]);o.r=Math.min(r,n)/(2+2*l),o.cx=e.l+e.w*(s.domain.x[1]+s.domain.x[0])/2,o.cy=e.t+e.h*(2-s.domain.y[1]-s.domain.y[0])/2,s.scalegroup&&-1===f.indexOf(s.scalegroup)&&f.push(s.scalegroup)}for(a=0;a<f.length;a++){for(u=1/0,c=f[a],i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(u=Math.min(u,o.r*o.r/o.vTotal));for(i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(o.r=Math.sqrt(u*o.vTotal))}}(e,r._size);var h=r._pielayer.selectAll("g.trace").data(e);h.enter().append("g").attr({"stroke-linejoin":"round",class:"trace"}),h.exit().remove(),h.order(),h.each(function(e){var h=n.select(this),d=e[0],p=d.trace;!function(t){var 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o=t._fullLayout,s=t._fullData[p.index];if(!t._dragging&&!1!==o.hovermode){var f=s.hoverinfo;if(Array.isArray(f)&&(f=i.castHoverinfo({hoverinfo:[l.castOption(f,e.pts)],_module:p._module},o,0)),"all"===f&&(f="label+text+value+percent+name"),"none"!==f&&"skip"!==f&&f){var m=u(e,d),v=a+e.pxmid[0]*(1-m),g=h+e.pxmid[1]*(1-m),y=r.separators,_=[];if(-1!==f.indexOf("label")&&_.push(e.label),-1!==f.indexOf("text")){var w=l.castOption(s.hovertext||s.text,e.pts);w&&_.push(w)}-1!==f.indexOf("value")&&_.push(l.formatPieValue(e.v,y)),-1!==f.indexOf("percent")&&_.push(l.formatPiePercent(e.v/d.vTotal,y));var M=p.hoverlabel,k=M.font;i.loneHover({x0:v-m*d.r,x1:v+m*d.r,y:g,text:_.join("<br>"),name:-1!==f.indexOf("name")?s.name:void 0,idealAlign:e.pxmid[0]<0?"left":"right",color:l.castOption(M.bgcolor,e.pts)||e.color,borderColor:l.castOption(M.bordercolor,e.pts),fontFamily:l.castOption(k.family,e.pts),fontSize:l.castOption(k.size,e.pts),fontColor:l.castOption(k.color,e.pts)},{container:o._hoverlayer.node(),outerContainer:o._paper.node(),gd:t}),b=!0}t.emit("plotly_hover",{points:[c(e,s)],event:n.event}),x=!0}}).on("mouseout",function(r){var a=t._fullLayout,o=t._fullData[p.index];x&&(r.originalEvent=n.event,t.emit("plotly_unhover",{points:[c(e,o)],event:n.event}),x=!1),b&&(i.loneUnhover(a._hoverlayer.node()),b=!1)}).on("click",function(){var r=t._fullLayout,a=t._fullData[p.index];t._dragging||!1===r.hovermode||(t._hoverdata=[c(e,a)],i.click(t,n.event))}),p.pull){var _=+l.castOption(p.pull,e.pts)||0;_>0&&(a+=_*e.pxmid[0],h+=_*e.pxmid[1])}e.cxFinal=a,e.cyFinal=h;var w=p.hole;if(e.v===d.vTotal){var M="M"+(a+e.px0[0])+","+(h+e.px0[1])+S(e.px0,e.pxmid,!0,1)+S(e.pxmid,e.px0,!0,1)+"Z";w?y.attr("d","M"+(a+w*e.px0[0])+","+(h+w*e.px0[1])+S(e.px0,e.pxmid,!1,w)+S(e.pxmid,e.px0,!1,w)+"Z"+M):y.attr("d",M)}else{var k=S(e.px0,e.px1,!0,1);if(w){var A=1-w;y.attr("d","M"+(a+w*e.px1[0])+","+(h+w*e.px1[1])+S(e.px1,e.px0,!1,w)+"l"+A*e.px0[0]+","+A*e.px0[1]+k+"Z")}else y.attr("d","M"+a+","+h+"l"+e.px0[0]+","+e.px0[1]+k+"Z")}var T=l.castOption(p.textposition,e.pts),E=g.selectAll("g.slicetext").data(e.text&&"none"!==T?[0]:[]);E.enter().append("g").classed("slicetext",!0),E.exit().remove(),E.each(function(){var r=n.select(this).selectAll("text").data([0]);r.enter().append("text").attr("data-notex",1),r.exit().remove(),r.text(e.text).attr({class:"slicetext",transform:"","text-anchor":"middle"}).call(o.font,"outside"===T?p.outsidetextfont:p.insidetextfont).call(s.convertToTspans,t);var i,l=o.bBox(r.node());"outside"===T?i=f(l,e):(i=function(t,e,r){var n=Math.sqrt(t.width*t.width+t.height*t.height),i=t.width/t.height,a=Math.PI*Math.min(e.v/r.vTotal,.5),o=1-r.trace.hole,s=u(e,r),l={scale:s*r.r*2/n,rCenter:1-s,rotate:0};if(l.scale>=1)return l;var c=i+1/(2*Math.tan(a)),f=r.r*Math.min(1/(Math.sqrt(c*c+.5)+c),o/(Math.sqrt(i*i+o/2)+i)),h={scale:2*f/t.height,rCenter:Math.cos(f/r.r)-f*i/r.r,rotate:(180/Math.PI*e.midangle+720)%180-90},d=1/i,p=d+1/(2*Math.tan(a)),m=r.r*Math.min(1/(Math.sqrt(p*p+.5)+p),o/(Math.sqrt(d*d+o/2)+d)),v={scale:2*m/t.width,rCenter:Math.cos(m/r.r)-m/i/r.r,rotate:(180/Math.PI*e.midangle+810)%180-90},g=v.scale>h.scale?v:h;return l.scale<1&&g.scale>l.scale?g:l}(l,e,d),"auto"===T&&i.scale<1&&(r.call(o.font,p.outsidetextfont),p.outsidetextfont.family===p.insidetextfont.family&&p.outsidetextfont.size===p.insidetextfont.size||(l=o.bBox(r.node())),i=f(l,e)));var c=a+e.pxmid[0]*i.rCenter+(i.x||0),m=h+e.pxmid[1]*i.rCenter+(i.y||0);i.outside&&(e.yLabelMin=m-l.height/2,e.yLabelMid=m,e.yLabelMax=m+l.height/2,e.labelExtraX=0,e.labelExtraY=0,v=!0),r.attr("transform","translate("+c+","+m+")"+(i.scale<1?"scale("+i.scale+")":"")+(i.rotate?"rotate("+i.rotate+")":"")+"translate("+-(l.left+l.right)/2+","+-(l.top+l.bottom)/2+")")})}function S(t,r,n,i){return"a"+i*d.r+","+i*d.r+" 0 "+e.largeArc+(n?" 1 ":" 0 ")+i*(r[0]-t[0])+","+i*(r[1]-t[1])}}),v&&function(t,e){var r,n,i,a,o,s,c,u,f,h,d,p,m;function v(t,e){return t.pxmid[1]-e.pxmid[1]}function g(t,e){return e.pxmid[1]-t.pxmid[1]}function y(t,r){r||(r={});var i,u,f,d,p,m,v=r.labelExtraY+(n?r.yLabelMax:r.yLabelMin),g=n?t.yLabelMin:t.yLabelMax,y=n?t.yLabelMax:t.yLabelMin,b=t.cyFinal+o(t.px0[1],t.px1[1]),x=v-g;if(x*c>0&&(t.labelExtraY=x),Array.isArray(e.pull))for(u=0;u<h.length;u++)(f=h[u])===t||(l.castOption(e.pull,t.pts)||0)>=(l.castOption(e.pull,f.pts)||0)||((t.pxmid[1]-f.pxmid[1])*c>0?(d=f.cyFinal+o(f.px0[1],f.px1[1]),(x=d-g-t.labelExtraY)*c>0&&(t.labelExtraY+=x)):(y+t.labelExtraY-b)*c>0&&(i=3*s*Math.abs(u-h.indexOf(t)),p=f.cxFinal+a(f.px0[0],f.px1[0]),(m=p+i-(t.cxFinal+t.pxmid[0])-t.labelExtraX)*s>0&&(t.labelExtraX+=m)))}for(n=0;n<2;n++)for(i=n?v:g,o=n?Math.max:Math.min,c=n?1:-1,r=0;r<2;r++){for(a=r?Math.max:Math.min,s=r?1:-1,(u=t[n][r]).sort(i),f=t[1-n][r],h=f.concat(u),p=[],d=0;d<u.length;d++)void 0!==u[d].yLabelMid&&p.push(u[d]);for(m=!1,d=0;n&&d<f.length;d++)if(void 0!==f[d].yLabelMid){m=f[d];break}for(d=0;d<p.length;d++){var b=d&&p[d-1];m&&!d&&(b=m),y(p[d],b)}}}(m,p),h.each(function(t){if(t.labelExtraX||t.labelExtraY){var e=n.select(this),r=e.select("g.slicetext text");r.attr("transform","translate("+t.labelExtraX+","+t.labelExtraY+")"+r.attr("transform"));var i=t.cxFinal+t.pxmid[0],o="M"+i+","+(t.cyFinal+t.pxmid[1]),s=(t.yLabelMax-t.yLabelMin)*(t.pxmid[0]<0?-1:1)/4;if(t.labelExtraX){var l=t.labelExtraX*t.pxmid[1]/t.pxmid[0],c=t.yLabelMid+t.labelExtraY-(t.cyFinal+t.pxmid[1]);Math.abs(l)>Math.abs(c)?o+="l"+c*t.pxmid[0]/t.pxmid[1]+","+c+"H"+(i+t.labelExtraX+s):o+="l"+t.labelExtraX+","+l+"v"+(c-l)+"h"+s}else o+="V"+(t.yLabelMid+t.labelExtraY)+"h"+s;e.append("path").classed("textline",!0).call(a.stroke,p.outsidetextfont.color).attr({"stroke-width":Math.min(2,p.outsidetextfont.size/8),d:o,fill:"none"})}})})}),setTimeout(function(){h.selectAll("tspan").each(function(){var t=n.select(this);t.attr("dy")&&t.attr("dy",t.attr("dy"))})},0)}},{"../../components/color":598,"../../components/drawing":623,"../../components/fx":640,"../../lib/svg_text_utils":747,"./event_data":1027,"./helpers":1028,d3:128}],1033:[function(t,e,r){"use strict";var n=t("d3"),i=t("./style_one");e.exports=function(t){t._fullLayout._pielayer.selectAll(".trace").each(function(t){var e=t[0].trace,r=n.select(this);r.style({opacity:e.opacity}),r.selectAll("path.surface").each(function(t){n.select(this).call(i,t,e)})})}},{"./style_one":1034,d3:128}],1034:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./helpers").castOption;e.exports=function(t,e,r){var a=r.marker.line,o=i(a.color,e.pts)||n.defaultLine,s=i(a.width,e.pts)||0;t.style({"stroke-width":s}).call(n.fill,e.color).call(n.stroke,o)}},{"../../components/color":598,"./helpers":1028}],1035:[function(t,e,r){"use strict";var n=t("../scatter/attributes");e.exports={x:n.x,y:n.y,xy:{valType:"data_array",editType:"calc"},indices:{valType:"data_array",editType:"calc"},xbounds:{valType:"data_array",editType:"calc"},ybounds:{valType:"data_array",editType:"calc"},text:n.text,marker:{color:{valType:"color",arrayOk:!1,editType:"calc"},opacity:{valType:"number",min:0,max:1,dflt:1,arrayOk:!1,editType:"calc"},blend:{valType:"boolean",dflt:null,editType:"calc"},sizemin:{valType:"number",min:.1,max:2,dflt:.5,editType:"calc"},sizemax:{valType:"number",min:.1,dflt:20,editType:"calc"},border:{color:{valType:"color",arrayOk:!1,editType:"calc"},arearatio:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},editType:"calc"},editType:"calc"}}},{"../scatter/attributes":1048}],1036:[function(t,e,r){"use strict";var n=t("gl-pointcloud2d"),i=t("../../lib/str2rgbarray"),a=t("../scatter/get_trace_color"),o=["xaxis","yaxis"];function s(t,e){this.scene=t,this.uid=e,this.type="pointcloud",this.pickXData=[],this.pickYData=[],this.xData=[],this.yData=[],this.textLabels=[],this.color="rgb(0, 0, 0)",this.name="",this.hoverinfo="all",this.idToIndex=new Int32Array(0),this.bounds=[0,0,0,0],this.pointcloudOptions={positions:new Float32Array(0),idToIndex:this.idToIndex,sizemin:.5,sizemax:12,color:[0,0,0,1],areaRatio:1,borderColor:[0,0,0,1]},this.pointcloud=n(t.glplot,this.pointcloudOptions),this.pointcloud._trace=this}var l=s.prototype;l.handlePick=function(t){var e=this.idToIndex[t.pointId];return{trace:this,dataCoord:t.dataCoord,traceCoord:this.pickXYData?[this.pickXYData[2*e],this.pickXYData[2*e+1]]:[this.pickXData[e],this.pickYData[e]],textLabel:Array.isArray(this.textLabels)?this.textLabels[e]:this.textLabels,color:this.color,name:this.name,pointIndex:e,hoverinfo:this.hoverinfo}},l.update=function(t){this.index=t.index,this.textLabels=t.text,this.name=t.name,this.hoverinfo=t.hoverinfo,this.bounds=[1/0,1/0,-1/0,-1/0],this.updateFast(t),this.color=a(t,{})},l.updateFast=function(t){var e,r,n,a,o,s,l=this.xData=this.pickXData=t.x,c=this.yData=this.pickYData=t.y,u=this.pickXYData=t.xy,f=t.xbounds&&t.ybounds,h=t.indices,d=this.bounds;if(u){if(n=u,e=u.length>>>1,f)d[0]=t.xbounds[0],d[2]=t.xbounds[1],d[1]=t.ybounds[0],d[3]=t.ybounds[1];else for(s=0;s<e;s++)a=n[2*s],o=n[2*s+1],a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);if(h)r=h;else for(r=new Int32Array(e),s=0;s<e;s++)r[s]=s}else for(e=l.length,n=new Float32Array(2*e),r=new Int32Array(e),s=0;s<e;s++)a=l[s],o=c[s],r[s]=s,n[2*s]=a,n[2*s+1]=o,a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);this.idToIndex=r,this.pointcloudOptions.idToIndex=r,this.pointcloudOptions.positions=n;var p=i(t.marker.color),m=i(t.marker.border.color),v=t.opacity*t.marker.opacity;p[3]*=v,this.pointcloudOptions.color=p;var g=t.marker.blend;if(null===g){g=l.length<100||c.length<100}this.pointcloudOptions.blend=g,m[3]*=v,this.pointcloudOptions.borderColor=m;var y=t.marker.sizemin,b=Math.max(t.marker.sizemax,t.marker.sizemin);this.pointcloudOptions.sizeMin=y,this.pointcloudOptions.sizeMax=b,this.pointcloudOptions.areaRatio=t.marker.border.arearatio,this.pointcloud.update(this.pointcloudOptions),this.expandAxesFast(d,b/2)},l.expandAxesFast=function(t,e){for(var r,n,i,a=e||.5,s=0;s<2;s++)(n=(r=this.scene[o[s]])._min)||(n=[]),n.push({val:t[s],pad:a}),(i=r._max)||(i=[]),i.push({val:t[s+2],pad:a})},l.dispose=function(){this.pointcloud.dispose()},e.exports=function(t,e){var r=new s(t,e.uid);return r.update(e),r}},{"../../lib/str2rgbarray":746,"../scatter/get_trace_color":1058,"gl-pointcloud2d":212}],1037:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}a("x"),a("y"),a("xbounds"),a("ybounds"),t.xy&&t.xy instanceof Float32Array&&(e.xy=t.xy),t.indices&&t.indices instanceof Int32Array&&(e.indices=t.indices),a("text"),a("marker.color",r),a("marker.opacity"),a("marker.blend"),a("marker.sizemin"),a("marker.sizemax"),a("marker.border.color",r),a("marker.border.arearatio")}},{"../../lib":724,"./attributes":1035}],1038:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("../scatter3d/calc"),n.plot=t("./convert"),n.moduleType="trace",n.name="pointcloud",n.basePlotModule=t("../../plots/gl2d"),n.categories=["gl","gl2d","showLegend"],n.meta={},e.exports=n},{"../../plots/gl2d":810,"../scatter3d/calc":1074,"./attributes":1035,"./convert":1036,"./defaults":1037}],1039:[function(t,e,r){"use strict";var n=t("../../plots/font_attributes"),i=t("../../plots/attributes"),a=t("../../components/color/attributes"),o=t("../../components/fx/attributes"),s=t("../../plots/domain_attributes"),l=t("../../lib/extend").extendFlat,c=t("../../plot_api/edit_types").overrideAll;e.exports=c({hoverinfo:l({},i.hoverinfo,{flags:["label","text","value","percent","name"]}),hoverlabel:o.hoverlabel,domain:s({name:"sankey",trace:!0}),orientation:{valType:"enumerated",values:["v","h"],dflt:"h"},valueformat:{valType:"string",dflt:".3s"},valuesuffix:{valType:"string",dflt:""},arrangement:{valType:"enumerated",values:["snap","perpendicular","freeform","fixed"],dflt:"snap"},textfont:n({}),node:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:.5,arrayOk:!0}},pad:{valType:"number",arrayOk:!1,min:0,dflt:20},thickness:{valType:"number",arrayOk:!1,min:1,dflt:20}},link:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:0,arrayOk:!0}},source:{valType:"data_array",dflt:[]},target:{valType:"data_array",dflt:[]},value:{valType:"data_array",dflt:[]}}},"calc","nested")},{"../../components/color/attributes":597,"../../components/fx/attributes":632,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1040:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("../../plots/get_data").getModuleCalcData,a=t("./plot"),o=t("../../components/fx/layout_attributes");r.name="sankey",r.baseLayoutAttrOverrides=n({hoverlabel:o.hoverlabel},"plot","nested"),r.plot=function(t){var e=i(t.calcdata,"sankey");a(t,e)},r.clean=function(t,e,r,n){var i=n._has&&n._has("sankey"),a=e._has&&e._has("sankey");i&&!a&&n._paperdiv.selectAll(".sankey").remove()}},{"../../components/fx/layout_attributes":641,"../../plot_api/edit_types":754,"../../plots/get_data":807,"./plot":1045}],1041:[function(t,e,r){"use strict";var n=t("strongly-connected-components"),i=t("../../lib"),a=t("../../lib/gup").wrap;e.exports=function(t,e){return function(t,e,r){for(var i=t.map(function(){return[]}),a=0;a<Math.min(e.length,r.length);a++){if(e[a]===r[a])return!0;i[e[a]].push(r[a])}return n(i).components.some(function(t){return t.length>1})}(e.node.label,e.link.source,e.link.target)&&(i.error("Circularity is present in the Sankey data. Removing all nodes and links."),e.link.label=[],e.link.source=[],e.link.target=[],e.link.value=[],e.link.color=[],e.node.label=[],e.node.color=[]),a({link:e.link,node:e.node})}},{"../../lib":724,"../../lib/gup":721,"strongly-connected-components":517}],1042:[function(t,e,r){"use strict";e.exports={nodeTextOffsetHorizontal:4,nodeTextOffsetVertical:3,nodePadAcross:10,sankeyIterations:50,forceIterations:5,forceTicksPerFrame:10,duration:500,ease:"cubic-in-out",cn:{sankey:"sankey",sankeyLinks:"sankey-links",sankeyLink:"sankey-link",sankeyNodeSet:"sankey-node-set",sankeyNode:"sankey-node",nodeRect:"node-rect",nodeCapture:"node-capture",nodeCentered:"node-entered",nodeLabelGuide:"node-label-guide",nodeLabel:"node-label",nodeLabelTextPath:"node-label-text-path"}}},{}],1043:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("../../components/color"),o=t("tinycolor2");e.exports=function(t,e,r,s){function l(r,a){return n.coerce(t,e,i,r,a)}l("node.label"),l("node.pad"),l("node.thickness"),l("node.line.color"),l("node.line.width");var c=s.colorway;l("node.color",e.node.label.map(function(t,e){return a.addOpacity(function(t){return c[t%c.length]}(e),.8)})),l("link.label"),l("link.source"),l("link.target"),l("link.value"),l("link.line.color"),l("link.line.width"),l("link.color",e.link.value.map(function(){return o(s.paper_bgcolor).getLuminance()<.333?"rgba(255, 255, 255, 0.6)":"rgba(0, 0, 0, 0.2)"})),l("domain.x"),l("domain.y"),l("orientation"),l("valueformat"),l("valuesuffix"),l("arrangement"),n.coerceFont(l,"textfont",n.extendFlat({},s.font));e.node.label.some(function(t,r){return-1===e.link.source.indexOf(r)&&-1===e.link.target.indexOf(r)})&&n.warn("Some of the nodes are neither sources nor targets, they will not be displayed.")}},{"../../components/color":598,"../../lib":724,"./attributes":1039,tinycolor2:526}],1044:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("./calc"),n.plot=t("./plot"),n.moduleType="trace",n.name="sankey",n.basePlotModule=t("./base_plot"),n.categories=["noOpacity"],n.meta={},e.exports=n},{"./attributes":1039,"./base_plot":1040,"./calc":1041,"./defaults":1043,"./plot":1045}],1045:[function(t,e,r){"use strict";var n=t("d3"),i=t("./render"),a=t("../../components/fx"),o=t("../../components/color"),s=t("../../lib"),l=t("./constants").cn,c=s._;function u(t){return""!==t}function f(t,e){return t.filter(function(t){return t.key===e.traceId})}function h(t,e){n.select(t).select("path").style("fill-opacity",e),n.select(t).select("rect").style("fill-opacity",e)}function d(t){n.select(t).select("text.name").style("fill","black")}function p(t){return function(e){return-1!==t.node.sourceLinks.indexOf(e.link)||-1!==t.node.targetLinks.indexOf(e.link)}}function m(t){return function(e){return-1!==e.node.sourceLinks.indexOf(t.link)||-1!==e.node.targetLinks.indexOf(t.link)}}function v(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(y.bind(0,e,r,!1))}function g(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(b.bind(0,e,r,!1))}function y(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",.4),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",.4),r&&f(e,t).selectAll("."+l.sankeyNode).filter(m(t)).call(v)}function b(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",function(t){return t.tinyColorAlpha}),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",function(t){return t.tinyColorAlpha}),r&&f(e,t).selectAll(l.sankeyNode).filter(m(t)).call(g)}function x(t,e){var r=t.hoverlabel||{},n=s.nestedProperty(r,e).get();return!Array.isArray(n)&&n}e.exports=function(t,e){var r=t._fullLayout,s=r._paper,f=r._size,p=c(t,"source:")+" ",m=c(t,"target:")+" ",_=c(t,"incoming flow count:")+" ",w=c(t,"outgoing flow count:")+" ";i(s,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{linkEvents:{hover:function(e,r,i){n.select(e).call(y.bind(0,r,i,!0)),t.emit("plotly_hover",{event:n.event,points:[r.link]})},follow:function(e,i){var s=i.link.trace,l=t._fullLayout._paperdiv.node().getBoundingClientRect(),c=e.getBoundingClientRect(),f=c.left+c.width/2,v=c.top+c.height/2,g=a.loneHover({x:f-l.left,y:v-l.top,name:n.format(i.valueFormat)(i.link.value)+i.valueSuffix,text:[i.link.label||"",p+i.link.source.label,m+i.link.target.label].filter(u).join("<br>"),color:x(s,"bgcolor")||o.addOpacity(i.tinyColorHue,1),borderColor:x(s,"bordercolor"),fontFamily:x(s,"font.family"),fontSize:x(s,"font.size"),fontColor:x(s,"font.color"),idealAlign:n.event.x<f?"right":"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.65),d(g)},unhover:function(e,i,o){n.select(e).call(b.bind(0,i,o,!0)),t.emit("plotly_unhover",{event:n.event,points:[i.link]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r){var i=r.link;i.originalEvent=n.event,t._hoverdata=[i],a.click(t,{target:!0})}},nodeEvents:{hover:function(e,r,i){n.select(e).call(v,r,i),t.emit("plotly_hover",{event:n.event,points:[r.node]})},follow:function(e,i){var o=i.node.trace,s=n.select(e).select("."+l.nodeRect),c=t._fullLayout._paperdiv.node().getBoundingClientRect(),f=s.node().getBoundingClientRect(),p=f.left-2-c.left,m=f.right+2-c.left,v=f.top+f.height/4-c.top,g=a.loneHover({x0:p,x1:m,y:v,name:n.format(i.valueFormat)(i.node.value)+i.valueSuffix,text:[i.node.label,_+i.node.targetLinks.length,w+i.node.sourceLinks.length].filter(u).join("<br>"),color:x(o,"bgcolor")||i.tinyColorHue,borderColor:x(o,"bordercolor"),fontFamily:x(o,"font.family"),fontSize:x(o,"font.size"),fontColor:x(o,"font.color"),idealAlign:"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.85),d(g)},unhover:function(e,i,o){n.select(e).call(g,i,o),t.emit("plotly_unhover",{event:n.event,points:[i.node]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r,i){var o=r.node;o.originalEvent=n.event,t._hoverdata=[o],n.select(e).call(g,r,i),a.click(t,{target:!0})}}})}},{"../../components/color":598,"../../components/fx":640,"../../lib":724,"./constants":1042,"./render":1046,d3:128}],1046:[function(t,e,r){"use strict";var n=t("./constants"),i=t("d3"),a=t("tinycolor2"),o=t("../../components/color"),s=t("../../components/drawing"),l=t("@plotly/d3-sankey").sankey,c=t("d3-force"),u=t("../../lib"),f=t("../../lib/gup").keyFun,h=t("../../lib/gup").repeat,d=t("../../lib/gup").unwrap;function p(t){t.lastDraggedX=t.x,t.lastDraggedY=t.y}function m(t){return function(e){return e.node.originalX===t.node.originalX}}function v(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y+t[e].dy/2}function g(t){t.attr("transform",function(t){return"translate("+t.node.x.toFixed(3)+", "+(t.node.y-t.node.dy/2).toFixed(3)+")"})}function y(t){var e=t.sankey.nodes();!function(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y-t[e].dy/2}(e);var r=t.sankey.link()(t.link);return v(e),r}function b(t){t.call(g)}function x(t,e){t.call(b),e.attr("d",y)}function _(t){t.attr("width",function(t){return t.visibleWidth}).attr("height",function(t){return t.visibleHeight})}function w(t){return t.link.dy>1||t.linkLineWidth>0}function M(t){return"translate("+t.translateX+","+t.translateY+")"+(t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)")}function k(t){return"translate("+(t.horizontal?0:t.labelY)+" "+(t.horizontal?t.labelY:0)+")"}function A(t){return i.svg.line()([[t.horizontal?t.left?-t.sizeAcross:t.visibleWidth+n.nodeTextOffsetHorizontal:n.nodeTextOffsetHorizontal,0],[t.horizontal?t.left?-n.nodeTextOffsetHorizontal:t.sizeAcross:t.visibleHeight-n.nodeTextOffsetHorizontal,0]])}function T(t){return t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)"}function E(t){return t.horizontal?"scale(1 1)":"scale(-1 1)"}function S(t){return t.darkBackground&&!t.horizontal?"rgb(255,255,255)":"rgb(0,0,0)"}function L(t){return t.horizontal&&t.left?"100%":"0%"}function C(t,e,r){t.on(".basic",null).on("mouseover.basic",function(t){t.interactionState.dragInProgress||(r.hover(this,t,e),t.interactionState.hovered=[this,t])}).on("mousemove.basic",function(t){t.interactionState.dragInProgress||(r.follow(this,t),t.interactionState.hovered=[this,t])}).on("mouseout.basic",function(t){t.interactionState.dragInProgress||(r.unhover(this,t,e),t.interactionState.hovered=!1)}).on("click.basic",function(t){t.interactionState.hovered&&(r.unhover(this,t,e),t.interactionState.hovered=!1),t.interactionState.dragInProgress||r.select(this,t,e)})}function P(t,e,r){var a=i.behavior.drag().origin(function(t){return t.node}).on("dragstart",function(i){if("fixed"!==i.arrangement&&(u.raiseToTop(this),i.interactionState.dragInProgress=i.node,p(i.node),i.interactionState.hovered&&(r.nodeEvents.unhover.apply(0,i.interactionState.hovered),i.interactionState.hovered=!1),"snap"===i.arrangement)){var a=i.traceId+"|"+Math.floor(i.node.originalX);i.forceLayouts[a]?i.forceLayouts[a].alpha(1):function(t,e,r){var i=r.sankey.nodes().filter(function(t){return t.originalX===r.node.originalX});r.forceLayouts[e]=c.forceSimulation(i).alphaDecay(0).force("collide",c.forceCollide().radius(function(t){return t.dy/2+r.nodePad/2}).strength(1).iterations(n.forceIterations)).force("constrain",function(t,e,r,i){return function(){for(var t=0,a=0;a<r.length;a++){var o=r[a];o===i.interactionState.dragInProgress?(o.x=o.lastDraggedX,o.y=o.lastDraggedY):(o.vx=(o.originalX-o.x)/n.forceTicksPerFrame,o.y=Math.min(i.size-o.dy/2,Math.max(o.dy/2,o.y))),t=Math.max(t,Math.abs(o.vx),Math.abs(o.vy))}!i.interactionState.dragInProgress&&t<.1&&i.forceLayouts[e].alpha()>0&&i.forceLayouts[e].alpha(0)}}(0,e,i,r)).stop()}(0,a,i),function(t,e,r,i){window.requestAnimationFrame(function a(){for(var o=0;o<n.forceTicksPerFrame;o++)r.forceLayouts[i].tick();r.sankey.relayout(),x(t.filter(m(r)),e),r.forceLayouts[i].alpha()>0&&window.requestAnimationFrame(a)})}(t,e,i,a)}}).on("drag",function(r){if("fixed"!==r.arrangement){var n=i.event.x,a=i.event.y;"snap"===r.arrangement?(r.node.x=n,r.node.y=a):("freeform"===r.arrangement&&(r.node.x=n),r.node.y=Math.max(r.node.dy/2,Math.min(r.size-r.node.dy/2,a))),p(r.node),"snap"!==r.arrangement&&(r.sankey.relayout(),x(t.filter(m(r)),e))}}).on("dragend",function(t){t.interactionState.dragInProgress=!1});t.on(".drag",null).call(a)}e.exports=function(t,e,r,i){var c=t.selectAll("."+n.cn.sankey).data(e.filter(function(t){return d(t).trace.visible}).map(function(t,e,r){for(var i,a=d(e).trace,o=a.domain,s=a.node,c=a.link,f=a.arrangement,h="h"===a.orientation,p=a.node.pad,m=a.node.thickness,g=a.node.line.color,y=a.node.line.width,b=a.link.line.color,x=a.link.line.width,_=a.valueformat,w=a.valuesuffix,M=a.textfont,k=t.width*(o.x[1]-o.x[0]),A=t.height*(o.y[1]-o.y[0]),T=s.label.map(function(t,e){return{pointNumber:e,label:t,color:u.isArray(s.color)?s.color[e]:s.color}}),E=c.value.map(function(t,e){return{pointNumber:e,label:c.label[e],color:u.isArray(c.color)?c.color[e]:c.color,source:c.source[e],target:c.target[e],value:t}}),S=l().size(h?[k,A]:[A,k]).nodeWidth(m).nodePadding(p).nodes(T).links(E).layout(n.sankeyIterations),L=S.nodes(),C=0;C<L.length;C++)(i=L[C]).width=k,i.height=A;return v(T),{key:r,trace:a,guid:Math.floor(1e12*(1+Math.random())),horizontal:h,width:k,height:A,nodePad:p,nodeLineColor:g,nodeLineWidth:y,linkLineColor:b,linkLineWidth:x,valueFormat:_,valueSuffix:w,textFont:M,translateX:o.x[0]*k+t.margin.l,translateY:t.height-o.y[1]*t.height+t.margin.t,dragParallel:h?A:k,dragPerpendicular:h?k:A,nodes:T,links:E,arrangement:f,sankey:S,forceLayouts:{},interactionState:{dragInProgress:!1,hovered:!1}}}.bind(null,r)),f);c.exit().remove(),c.enter().append("g").classed(n.cn.sankey,!0).style("box-sizing","content-box").style("position","absolute").style("left",0).style("shape-rendering","geometricPrecision").style("pointer-events","auto").style("box-sizing","content-box").attr("transform",M),c.transition().ease(n.ease).duration(n.duration).attr("transform",M);var p=c.selectAll("."+n.cn.sankeyLinks).data(h,f);p.enter().append("g").classed(n.cn.sankeyLinks,!0).style("fill","none");var m=p.selectAll("."+n.cn.sankeyLink).data(function(t){return t.sankey.links().filter(function(t){return t.value}).map(function(t,e,r){var n=a(r.color),i=r.source.label+"|"+r.target.label,s=t[i];t[i]=(s||0)+1;var l=i+"__"+t[i];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:l,traceId:e.key,link:r,tinyColorHue:o.tinyRGB(n),tinyColorAlpha:n.getAlpha(),linkLineColor:e.linkLineColor,linkLineWidth:e.linkLineWidth,valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,interactionState:e.interactionState}}.bind(null,{},t))},f);m.enter().append("path").classed(n.cn.sankeyLink,!0).attr("d",y).call(C,c,i.linkEvents),m.style("stroke",function(t){return w(t)?o.tinyRGB(a(t.linkLineColor)):t.tinyColorHue}).style("stroke-opacity",function(t){return w(t)?o.opacity(t.linkLineColor):t.tinyColorAlpha}).style("stroke-width",function(t){return w(t)?t.linkLineWidth:1}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),m.transition().ease(n.ease).duration(n.duration).attr("d",y),m.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var b=c.selectAll("."+n.cn.sankeyNodeSet).data(h,f);b.enter().append("g").classed(n.cn.sankeyNodeSet,!0),b.style("cursor",function(t){switch(t.arrangement){case"fixed":return"default";case"perpendicular":return"ns-resize";default:return"move"}});var x=b.selectAll("."+n.cn.sankeyNode).data(function(t){var e=t.sankey.nodes();return function(t){var e,r=[];for(e=0;e<t.length;e++)t[e].originalX=t[e].x,t[e].originalY=t[e].y,-1===r.indexOf(t[e].x)&&r.push(t[e].x);for(r.sort(function(t,e){return t-e}),e=0;e<t.length;e++)t[e].originalLayerIndex=r.indexOf(t[e].originalX),t[e].originalLayer=t[e].originalLayerIndex/(r.length-1)}(e),e.filter(function(t){return t.value}).map(function(t,e,r){var i=a(r.color),s=n.nodePadAcross,l=e.nodePad/2,c=r.dx,u=Math.max(.5,r.dy),f=r.label,h=t[f];t[f]=(h||0)+1;var d=f+"__"+t[f];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:d,traceId:e.key,node:r,nodePad:e.nodePad,nodeLineColor:e.nodeLineColor,nodeLineWidth:e.nodeLineWidth,textFont:e.textFont,size:e.horizontal?e.height:e.width,visibleWidth:Math.ceil(c),visibleHeight:u,zoneX:-s,zoneY:-l,zoneWidth:c+2*s,zoneHeight:u+2*l,labelY:e.horizontal?r.dy/2+1:r.dx/2+1,left:1===r.originalLayer,sizeAcross:e.width,forceLayouts:e.forceLayouts,horizontal:e.horizontal,darkBackground:i.getBrightness()<=128,tinyColorHue:o.tinyRGB(i),tinyColorAlpha:i.getAlpha(),valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,arrangement:e.arrangement,uniqueNodeLabelPathId:[e.guid,e.key,d].join(" "),interactionState:e.interactionState}}.bind(null,{},t))},f);x.enter().append("g").classed(n.cn.sankeyNode,!0).call(g).call(C,c,i.nodeEvents),x.call(P,m,i),x.transition().ease(n.ease).duration(n.duration).call(g),x.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var z=x.selectAll("."+n.cn.nodeRect).data(h);z.enter().append("rect").classed(n.cn.nodeRect,!0).call(_),z.style("stroke-width",function(t){return t.nodeLineWidth}).style("stroke",function(t){return o.tinyRGB(a(t.nodeLineColor))}).style("stroke-opacity",function(t){return o.opacity(t.nodeLineColor)}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),z.transition().ease(n.ease).duration(n.duration).call(_);var O=x.selectAll("."+n.cn.nodeCapture).data(h);O.enter().append("rect").classed(n.cn.nodeCapture,!0).style("fill-opacity",0),O.attr("x",function(t){return t.zoneX}).attr("y",function(t){return t.zoneY}).attr("width",function(t){return t.zoneWidth}).attr("height",function(t){return t.zoneHeight});var D=x.selectAll("."+n.cn.nodeCentered).data(h);D.enter().append("g").classed(n.cn.nodeCentered,!0).attr("transform",k),D.transition().ease(n.ease).duration(n.duration).attr("transform",k);var I=D.selectAll("."+n.cn.nodeLabelGuide).data(h);I.enter().append("path").classed(n.cn.nodeLabelGuide,!0).attr("id",function(t){return t.uniqueNodeLabelPathId}).attr("d",A).attr("transform",T),I.transition().ease(n.ease).duration(n.duration).attr("d",A).attr("transform",T);var R=D.selectAll("."+n.cn.nodeLabel).data(h);R.enter().append("text").classed(n.cn.nodeLabel,!0).attr("transform",E).style("user-select","none").style("cursor","default").style("fill","black"),R.style("text-shadow",function(t){return t.horizontal?"-1px 1px 1px #fff, 1px 1px 1px #fff, 1px -1px 1px #fff, -1px -1px 1px #fff":"none"}).each(function(t){s.font(R,t.textFont)}),R.transition().ease(n.ease).duration(n.duration).attr("transform",E);var N=R.selectAll("."+n.cn.nodeLabelTextPath).data(h);N.enter().append("textPath").classed(n.cn.nodeLabelTextPath,!0).attr("alignment-baseline","middle").attr("xlink:href",function(t){return"#"+t.uniqueNodeLabelPathId}).attr("startOffset",L).style("fill",S),N.text(function(t){return t.horizontal||t.node.dy>5?t.node.label:""}).attr("text-anchor",function(t){return t.horizontal&&t.left?"end":"start"}),N.transition().ease(n.ease).duration(n.duration).attr("startOffset",L).style("fill",S)}},{"../../components/color":598,"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1042,"@plotly/d3-sankey":41,d3:128,"d3-force":124,tinycolor2:526}],1047:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){for(var r=0;r<t.length;r++)t[r].i=r;n.mergeArray(e.text,t,"tx"),n.mergeArray(e.hovertext,t,"htx"),n.mergeArray(e.customdata,t,"data"),n.mergeArray(e.textposition,t,"tp"),e.textfont&&(n.mergeArray(e.textfont.size,t,"ts"),n.mergeArray(e.textfont.color,t,"tc"),n.mergeArray(e.textfont.family,t,"tf"));var i=e.marker;if(i){n.mergeArray(i.size,t,"ms"),n.mergeArray(i.opacity,t,"mo"),n.mergeArray(i.symbol,t,"mx"),n.mergeArray(i.color,t,"mc");var a=i.line;i.line&&(n.mergeArray(a.color,t,"mlc"),n.mergeArray(a.width,t,"mlw"));var o=i.gradient;o&&"none"!==o.type&&(n.mergeArray(o.type,t,"mgt"),n.mergeArray(o.color,t,"mgc"))}}},{"../../lib":724}],1048:[function(t,e,r){"use strict";var n=t("../../components/colorscale/color_attributes"),i=t("../../components/errorbars/attributes"),a=t("../../components/colorbar/attributes"),o=t("../../plots/font_attributes"),s=t("../../components/drawing/attributes").dash,l=t("../../components/drawing"),c=(t("./constants"),t("../../lib/extend").extendFlat);e.exports={x:{valType:"data_array",editType:"calc+clearAxisTypes"},x0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dx:{valType:"number",dflt:1,editType:"calc"},y:{valType:"data_array",editType:"calc+clearAxisTypes"},y0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dy:{valType:"number",dflt:1,editType:"calc"},text:{valType:"string",dflt:"",arrayOk:!0,editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},mode:{valType:"flaglist",flags:["lines","markers","text"],extras:["none"],editType:"calc"},hoveron:{valType:"flaglist",flags:["points","fills"],editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},shape:{valType:"enumerated",values:["linear","spline","hv","vh","hvh","vhv"],dflt:"linear",editType:"plot"},smoothing:{valType:"number",min:0,max:1.3,dflt:1,editType:"plot"},dash:c({},s,{editType:"style"}),simplify:{valType:"boolean",dflt:!0,editType:"plot"},editType:"plot"},connectgaps:{valType:"boolean",dflt:!1,editType:"calc"},cliponaxis:{valType:"boolean",dflt:!0,editType:"plot"},fill:{valType:"enumerated",values:["none","tozeroy","tozerox","tonexty","tonextx","toself","tonext"],dflt:"none",editType:"calc"},fillcolor:{valType:"color",editType:"style"},marker:c({symbol:{valType:"enumerated",values:l.symbolList,dflt:"circle",arrayOk:!0,editType:"style"},opacity:{valType:"number",min:0,max:1,arrayOk:!0,editType:"style"},size:{valType:"number",min:0,dflt:6,arrayOk:!0,editType:"calcIfAutorange"},maxdisplayed:{valType:"number",min:0,dflt:0,editType:"plot"},sizeref:{valType:"number",dflt:1,editType:"calc"},sizemin:{valType:"number",min:0,dflt:0,editType:"calc"},sizemode:{valType:"enumerated",values:["diameter","area"],dflt:"diameter",editType:"calc"},showscale:{valType:"boolean",dflt:!1,editType:"calc"},colorbar:a,line:c({width:{valType:"number",min:0,arrayOk:!0,editType:"style"},editType:"calc"},n("marker.line")),gradient:{type:{valType:"enumerated",values:["radial","horizontal","vertical","none"],arrayOk:!0,dflt:"none",editType:"calc"},color:{valType:"color",arrayOk:!0,editType:"calc"},editType:"calc"},editType:"calc"},n("marker")),selected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},unselected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},textposition:{valType:"enumerated",values:["top left","top center","top right","middle left","middle center","middle right","bottom left","bottom center","bottom right"],dflt:"middle center",arrayOk:!0,editType:"calc"},textfont:o({editType:"calc",colorEditType:"style",arrayOk:!0}),r:{valType:"data_array",editType:"calc"},t:{valType:"data_array",editType:"calc"},error_y:i,error_x:i}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../components/drawing":623,"../../components/drawing/attributes":622,"../../components/errorbars/attributes":625,"../../lib/extend":713,"../../plots/font_attributes":797,"./constants":1054}],1049:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("./subtypes"),s=t("./colorscale_calc"),l=t("./arrays_to_calcdata"),c=t("./calc_selection");function u(t,e){if(o.hasMarkers(t)){var r,n=t.marker,a=1.6*(t.marker.sizeref||1);if(r="area"===t.marker.sizemode?function(t){return Math.max(Math.sqrt((t||0)/a),3)}:function(t){return Math.max((t||0)/a,3)},Array.isArray(n.size)){var s={type:"linear"};i.setConvert(s);for(var l=s.makeCalcdata(t.marker,"size"),c=new Array(e),u=0;u<e;u++)c[u]=r(l[u]);return c}return r(n.size)}}e.exports={calc:function(t,e){var r=i.getFromId(t,e.xaxis||"x"),f=i.getFromId(t,e.yaxis||"y"),h=r.makeCalcdata(e,"x"),d=f.makeCalcdata(e,"y"),p=e._length;r._minDtick=0,f._minDtick=0;var m={padded:!0},v={padded:!0},g=u(e,p);g&&(m.ppad=v.ppad=g),!("tozerox"===e.fill||"tonextx"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?e.error_y.visible||-1===["tonexty","tozeroy"].indexOf(e.fill)&&(o.hasMarkers(e)||o.hasText(e))||(m.padded=!1,m.ppad=0):m.tozero=!0,!("tozeroy"===e.fill||"tonexty"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?-1!==["tonextx","tozerox"].indexOf(e.fill)&&(v.padded=!1):v.tozero=!0,i.expand(r,h,m),i.expand(f,d,v);for(var y=new Array(p),b=0;b<p;b++)y[b]=n(h[b])&&n(d[b])?{x:h[b],y:d[b]}:{x:a,y:a},e.ids&&(y[b].id=String(e.ids[b]));return l(y,e),s(e),c(y,e),t.firstscatter=!1,y},calcMarkerSize:u}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"./arrays_to_calcdata":1047,"./calc_selection":1050,"./colorscale_calc":1053,"./subtypes":1070,"fast-isnumeric":140}],1050:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){Array.isArray(e.selectedpoints)&&n.tagSelected(t,e)}},{"../../lib":724}],1051:[function(t,e,r){"use strict";e.exports=function(t){for(var e=0;e<t.length;e++){var r=t[e];if("scatter"===r.type){var n=r.fill;if("none"!==n&&"toself"!==n&&(r.opacity=void 0,"tonexty"===n||"tonextx"===n))for(var i=e-1;i>=0;i--){var a=t[i];if("scatter"===a.type&&a.xaxis===r.xaxis&&a.yaxis===r.yaxis){a.opacity=void 0;break}}}}}},{}],1052:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib"),a=t("../../plots/plots"),o=t("../../components/colorscale"),s=t("../../components/colorbar/draw");e.exports=function(t,e){var r=e[0].trace,l=r.marker,c="cb"+r.uid;if(t._fullLayout._infolayer.selectAll("."+c).remove(),void 0!==l&&l.showscale){var u=l.color,f=l.cmin,h=l.cmax;n(f)||(f=i.aggNums(Math.min,null,u)),n(h)||(h=i.aggNums(Math.max,null,u));var d=e[0].t.cb=s(t,c),p=o.makeColorScaleFunc(o.extractScale(l.colorscale,f,h),{noNumericCheck:!0});d.fillcolor(p).filllevels({start:f,end:h,size:(h-f)/254}).options(l.colorbar)()}else a.autoMargin(t,c)}},{"../../components/colorbar/draw":602,"../../components/colorscale":613,"../../lib":724,"../../plots/plots":833,"fast-isnumeric":140}],1053:[function(t,e,r){"use strict";var n=t("../../components/colorscale/has_colorscale"),i=t("../../components/colorscale/calc"),a=t("./subtypes");e.exports=function(t){a.hasLines(t)&&n(t,"line")&&i(t,t.line.color,"line","c"),a.hasMarkers(t)&&(n(t,"marker")&&i(t,t.marker.color,"marker","c"),n(t,"marker.line")&&i(t,t.marker.line.color,"marker.line","c"))}},{"../../components/colorscale/calc":605,"../../components/colorscale/has_colorscale":612,"./subtypes":1070}],1054:[function(t,e,r){"use strict";e.exports={PTS_LINESONLY:20,minTolerance:.2,toleranceGrowth:10,maxScreensAway:20}},{}],1055:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("./constants"),o=t("./subtypes"),s=t("./xy_defaults"),l=t("./marker_defaults"),c=t("./line_defaults"),u=t("./line_shape_defaults"),f=t("./text_defaults"),h=t("./fillcolor_defaults"),d=t("../../components/errorbars/defaults");e.exports=function(t,e,r,p){function m(r,a){return n.coerce(t,e,i,r,a)}var v=s(t,e,p,m),g=v<a.PTS_LINESONLY?"lines+markers":"lines";if(v){m("text"),m("hovertext"),m("mode",g),o.hasLines(e)&&(c(t,e,r,p,m),u(t,e,m),m("connectgaps"),m("line.simplify")),o.hasMarkers(e)&&l(t,e,r,p,m,{gradient:!0}),o.hasText(e)&&f(t,e,p,m);var y=[];(o.hasMarkers(e)||o.hasText(e))&&(m("cliponaxis"),m("marker.maxdisplayed"),y.push("points")),m("fill"),"none"!==e.fill&&(h(t,e,r,m),o.hasLines(e)||u(t,e,m)),"tonext"!==e.fill&&"toself"!==e.fill||y.push("fills"),m("hoveron",y.join("+")||"points"),d(t,e,r,{axis:"y"}),d(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,m)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"./attributes":1048,"./constants":1054,"./fillcolor_defaults":1057,"./line_defaults":1061,"./line_shape_defaults":1063,"./marker_defaults":1066,"./subtypes":1070,"./text_defaults":1071,"./xy_defaults":1072}],1056:[function(t,e,r){"use strict";var n=t("../../lib");function i(t){return t||0===t}e.exports=function(t,e,r){var a=Array.isArray(r)?function(t){r.push(t)}:function(t){r.text=t},o=n.extractOption(t,e,"htx","hovertext");if(i(o))return a(o);var s=n.extractOption(t,e,"tx","text");return i(s)?a(s):void 0}},{"../../lib":724}],1057:[function(t,e,r){"use strict";var n=t("../../components/color");e.exports=function(t,e,r,i){var a=!1;if(e.marker){var o=e.marker.color,s=(e.marker.line||{}).color;o&&!Array.isArray(o)?a=o:s&&!Array.isArray(s)&&(a=s)}i("fillcolor",n.addOpacity((e.line||{}).color||a||r,.5))}},{"../../components/color":598}],1058:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./subtypes");e.exports=function(t,e){var r,a;if("lines"===t.mode)return(r=t.line.color)&&n.opacity(r)?r:t.fillcolor;if("none"===t.mode)return t.fill?t.fillcolor:"";var o=e.mcc||(t.marker||{}).color,s=e.mlcc||((t.marker||{}).line||{}).color;return(a=o&&n.opacity(o)?o:s&&n.opacity(s)&&(e.mlw||((t.marker||{}).line||{}).width)?s:"")?n.opacity(a)<.3?n.addOpacity(a,.3):a:(r=(t.line||{}).color)&&n.opacity(r)&&i.hasLines(t)&&t.line.width?r:t.fillcolor}},{"../../components/color":598,"./subtypes":1070}],1059:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/fx"),a=t("../../components/errorbars"),o=t("./get_trace_color"),s=t("../../components/color"),l=t("./fill_hover_text"),c=i.constants.MAXDIST;e.exports=function(t,e,r,u){var f=t.cd,h=f[0].trace,d=t.xa,p=t.ya,m=d.c2p(e),v=p.c2p(r),g=[m,v],y=h.hoveron||"",b=-1!==h.mode.indexOf("markers")?3:.5;if(-1!==y.indexOf("points")){var x=i.getDistanceFunction(u,function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(d.c2p(t.x)-m);return n<e?r*n/e:n-e+r},function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(p.c2p(t.y)-v);return n<e?r*n/e:n-e+r},function(t){var 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s.opacity(h.fillcolor)?V=h.fillcolor:s.opacity((h.line||{}).color)&&(V=h.line.color),n.extendFlat(t,{distance:c+10,x0:N,x1:F,y0:U,y1:U,color:V}),delete t.index,h.text&&!Array.isArray(h.text)?t.text=String(h.text):t.text=h.name,[t]}}}},{"../../components/color":598,"../../components/errorbars":629,"../../components/fx":640,"../../lib":724,"./fill_hover_text":1056,"./get_trace_color":1058}],1060:[function(t,e,r){"use strict";var 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r=[i(t.x,t.error_x,e[0]),i(t.y,t.error_y,e[1]),i(t.z,t.error_z,e[2])],n=function(t){for(var e=0;e<t.length;e++)if(t[e])return t[e].length;return 0}(r);if(0===n)return null;for(var a=new Array(n),o=0;o<n;o++){for(var s=[[0,0,0],[0,0,0]],l=0;l<3;l++)if(r[l])for(var c=0;c<2;c++)s[c][l]=r[l][o][c];a[o]=s}return a}},{"../../components/errorbars/compute_error":627}],1076:[function(t,e,r){"use strict";var n=t("gl-line3d"),i=t("gl-scatter3d"),a=t("gl-error3d"),o=t("gl-mesh3d"),s=t("delaunay-triangulate"),l=t("../../lib"),c=t("../../lib/str2rgbarray"),u=t("../../lib/gl_format_color"),f=t("../scatter/make_bubble_size_func"),h=t("../../constants/gl3d_dashes"),d=t("../../constants/gl3d_markers"),p=t("./calc_errors");function m(t,e){this.scene=t,this.uid=e,this.linePlot=null,this.scatterPlot=null,this.errorBars=null,this.textMarkers=null,this.delaunayMesh=null,this.color=null,this.mode="",this.dataPoints=[],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.textLabels=null,this.data=null}var 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m=function(t,e,r){var n,i=(r+1)%3,a=(r+2)%3,o=[],l=[];for(n=0;n<t.length;++n){var c=t[n];!isNaN(c[i])&&isFinite(c[i])&&!isNaN(c[a])&&isFinite(c[a])&&(o.push([c[i],c[a]]),l.push(n))}var u=s(o);for(n=0;n<u.length;++n)for(var f=u[n],h=0;h<f.length;++h)f[h]=l[f[h]];return{positions:t,cells:u,meshColor:e}}(d.position,d.delaunayColor,d.delaunayAxis);m.opacity=t.opacity,this.delaunayMesh?this.delaunayMesh.update(m):(m.gl=u,this.delaunayMesh=o(m),this.delaunayMesh._trace=this,this.scene.glplot.add(this.delaunayMesh))}else 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n=t("../../registry"),i=t("../../lib"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/text_defaults"),c=t("../../components/errorbars/defaults"),u=t("./attributes");e.exports=function(t,e,r,f){function h(r,n){return i.coerce(t,e,u,r,n)}if(function(t,e,r,i){var a=0,o=r("x"),s=r("y"),l=r("z");n.getComponentMethod("calendars","handleTraceDefaults")(t,e,["x","y","z"],i),o&&s&&l&&(a=Math.min(o.length,s.length,l.length),e._xlength=e._ylength=e._zlength=a);return a}(t,e,h,f)){h("text"),h("hovertext"),h("mode"),a.hasLines(e)&&(h("connectgaps"),s(t,e,r,f,h)),a.hasMarkers(e)&&o(t,e,r,f,h,{noSelect:!0}),a.hasText(e)&&l(t,e,f,h,{noSelect:!0});var d=(e.line||{}).color,p=(e.marker||{}).color;h("surfaceaxis")>=0&&h("surfacecolor",d||p);for(var m=["x","y","z"],v=0;v<3;++v){var g="projection."+m[v];h(g+".show")&&(h(g+".opacity"),h(g+".scale"))}c(t,e,r,{axis:"z"}),c(t,e,r,{axis:"y",inherit:"z"}),c(t,e,r,{axis:"x",inherit:"z"})}else 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n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/colorbar/attributes"),s=t("../../lib/extend").extendFlat,l=n.marker,c=n.line,u=l.line;e.exports={carpet:{valType:"string",editType:"calc"},a:{valType:"data_array",editType:"calc"},b:{valType:"data_array",editType:"calc"},mode:s({},n.mode,{dflt:"markers"}),text:s({},n.text,{}),line:{color:c.color,width:c.width,dash:c.dash,shape:s({},c.shape,{values:["linear","spline"]}),smoothing:c.smoothing,editType:"calc"},connectgaps:n.connectgaps,fill:s({},n.fill,{values:["none","toself","tonext"]}),fillcolor:n.fillcolor,marker:s({symbol:l.symbol,opacity:l.opacity,maxdisplayed:l.maxdisplayed,size:l.size,sizeref:l.sizeref,sizemin:l.sizemin,sizemode:l.sizemode,line:s({width:u.width,editType:"calc"},a("marker".line)),gradient:l.gradient,editType:"calc"},a("marker"),{showscale:l.showscale,colorbar:o}),textfont:n.textfont,textposition:n.textposition,selected:n.selected,unselected:n.unselected,hoverinfo:s({},i.hoverinfo,{flags:["a","b","text","name"]}),hoveron:n.hoveron}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1080:[function(t,e,r){"use 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n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/line_shape_defaults"),c=t("../scatter/text_defaults"),u=t("../scatter/fillcolor_defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}d("carpet"),e.xaxis="x",e.yaxis="y";var p,m=d("a"),v=d("b");if(p=Math.min(m.length,v.length)){m&&p<m.length&&(e.a=m.slice(0,p)),v&&p<v.length&&(e.b=v.slice(0,p)),d("text"),d("mode",p<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(s(t,e,r,h,d),l(t,e,d),d("connectgaps")),a.hasMarkers(e)&&o(t,e,r,h,d,{gradient:!0}),a.hasText(e)&&c(t,e,h,d);var g=[];(a.hasMarkers(e)||a.hasText(e))&&(d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(u(t,e,r,d),a.hasLines(e)||l(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1079}],1082:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){var a=n[i];return t.a=a.a,t.b=a.b,t}},{}],1083:[function(t,e,r){"use strict";var n=t("../scatter/hover");e.exports=function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var o=a[0];if(void 0===o.index){var s=1-o.y0/t.ya._length,l=t.xa._length,c=l*s/2,u=l-c;return o.x0=Math.max(Math.min(o.x0,u),c),o.x1=Math.max(Math.min(o.x1,u),c),a}var f=o.cd[o.index];o.a=f.a,o.b=f.b,o.xLabelVal=void 0,o.yLabelVal=void 0;var h=o.trace,d=h._carpet,p=(f.hi||h.hoverinfo).split("+"),m=[];-1!==p.indexOf("all")&&(p=["a","b"]),-1!==p.indexOf("a")&&w(d.aaxis,f.a),-1!==p.indexOf("b")&&w(d.baxis,f.b);var v=d.ab2ij([f.a,f.b]),g=Math.floor(v[0]),y=v[0]-g,b=Math.floor(v[1]),x=v[1]-b,_=d.evalxy([],g,b,y,x);return m.push("y: "+_[1].toFixed(3)),o.extraText=m.join("<br>"),a}function w(t,e){var r;r=t.labelprefix&&t.labelprefix.length>0?t.labelprefix.replace(/ = $/,""):t._hovertitle,m.push(r+": "+e.toFixed(3)+t.labelsuffix)}}},{"../scatter/hover":1059}],1084:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("../scatter/style").style,n.hoverPoints=t("./hover"),n.selectPoints=t("../scatter/select"),n.eventData=t("./event_data"),n.moduleType="trace",n.name="scattercarpet",n.basePlotModule=t("../../plots/cartesian"),n.categories=["carpet","symbols","markerColorscale","showLegend","carpetDependent"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"../scatter/colorbar":1052,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1079,"./calc":1080,"./defaults":1081,"./event_data":1082,"./hover":1083,"./plot":1085}],1085:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../plots/cartesian/axes"),a=t("../../components/drawing");e.exports=function(t,e,r){var o,s,l,c=r[0][0].carpet,u={xaxis:i.getFromId(t,c.xaxis||"x"),yaxis:i.getFromId(t,c.yaxis||"y"),plot:e.plot};for(n(t,u,r),o=0;o<r.length;o++)s=r[o][0].trace,l=u.plot.selectAll("g.trace"+s.uid+" .js-line"),a.setClipUrl(l,c._clipPathId)}},{"../../components/drawing":623,"../../plots/cartesian/axes":770,"../scatter/plot":1067}],1086:[function(t,e,r){"use strict";var n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/drawing/attributes").dash,s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=n.marker,u=n.line,f=c.line;e.exports=l({lon:{valType:"data_array"},lat:{valType:"data_array"},locations:{valType:"data_array"},locationmode:{valType:"enumerated",values:["ISO-3","USA-states","country 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n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../scatter/colorscale_calc"),o=t("../scatter/arrays_to_calcdata"),s=t("../scatter/calc_selection"),l=t("../../lib")._;e.exports=function(t,e){for(var r=Array.isArray(e.locations),c=r?e.locations.length:e._length,u=new Array(c),f=0;f<c;f++){var h=u[f]={};if(r){var d=e.locations[f];h.loc="string"==typeof d?d:null}else{var p=e.lon[f],m=e.lat[f];n(p)&&n(m)?h.lonlat=[+p,+m]:h.lonlat=[i,i]}}return o(u,e),a(e),s(u,e),c&&(u[0].t={labels:{lat:l(t,"lat:")+" ",lon:l(t,"lon:")+" "}}),u}},{"../../constants/numerical":702,"../../lib":724,"../scatter/arrays_to_calcdata":1047,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1088:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/text_defaults"),l=t("../scatter/fillcolor_defaults"),c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}!function(t,e,r){var n,i,a=0,o=r("locations");if(o)return r("locationmode"),a=o.length;return n=r("lon")||[],i=r("lat")||[],a=Math.min(n.length,i.length),e._length=a,a}(0,e,f)?e.visible=!1:(f("text"),f("hovertext"),f("mode"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps")),i.hasMarkers(e)&&a(t,e,r,u,f,{gradient:!0}),i.hasText(e)&&s(t,e,u,f),f("fill"),"none"!==e.fill&&l(t,e,r,f))}},{"../../lib":724,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1086}],1089:[function(t,e,r){"use strict";e.exports=function(t,e){return t.lon=e.lon,t.lat=e.lat,t.location=e.loc?e.loc:null,t}},{}],1090:[function(t,e,r){"use strict";var n=t("../../components/fx"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("../scatter/get_trace_color"),s=t("../scatter/fill_hover_text"),l=t("./attributes");e.exports=function(t,e,r){var c=t.cd,u=c[0].trace,f=t.xa,h=t.ya,d=t.subplot,p=d.projection.isLonLatOverEdges,m=d.project;if(n.getClosest(c,function(t){var n=t.lonlat;if(n[0]===a)return 1/0;if(p(n))return 1/0;var i=m(n),o=m([e,r]),s=Math.abs(i[0]-o[0]),l=Math.abs(i[1]-o[1]),c=Math.max(3,t.mrc||0);return Math.max(Math.sqrt(s*s+l*l)-c,1-3/c)},t),!1!==t.index){var v=c[t.index],g=v.lonlat,y=[f.c2p(g),h.c2p(g)],b=v.mrc||1;return t.x0=y[0]-b,t.x1=y[0]+b,t.y0=y[1]-b,t.y1=y[1]+b,t.loc=v.loc,t.lon=g[0],t.lat=g[1],t.color=o(u,v),t.extraText=function(t,e,r,n){var a=e.hi||t.hoverinfo,o="all"===a?l.hoverinfo.flags:a.split("+"),c=-1!==o.indexOf("location")&&Array.isArray(t.locations),u=-1!==o.indexOf("lon"),f=-1!==o.indexOf("lat"),h=-1!==o.indexOf("text"),d=[];function p(t){return i.tickText(r,r.c2l(t),"hover").text+"\xb0"}c?d.push(e.loc):u&&f?d.push("("+p(e.lonlat[0])+", "+p(e.lonlat[1])+")"):u?d.push(n.lon+p(e.lonlat[0])):f&&d.push(n.lat+p(e.lonlat[1]));h&&s(e,t,d);return d.join("<br>")}(u,v,d.mockAxis,c[0].t.labels),[t]}}},{"../../components/fx":640,"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/fill_hover_text":1056,"../scatter/get_trace_color":1058,"./attributes":1086}],1091:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.hoverPoints=t("./hover"),n.eventData=t("./event_data"),n.selectPoints=t("./select"),n.moduleType="trace",n.name="scattergeo",n.basePlotModule=t("../../plots/geo"),n.categories=["geo","symbols","markerColorscale","showLegend","scatter-like"],n.meta={},e.exports=n},{"../../plots/geo":801,"../scatter/colorbar":1052,"./attributes":1086,"./calc":1087,"./defaults":1088,"./event_data":1089,"./hover":1090,"./plot":1092,"./select":1093,"./style":1094}],1092:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../../constants/numerical").BADNUM,o=t("../../lib/topojson_utils").getTopojsonFeatures,s=t("../../lib/geo_location_utils").locationToFeature,l=t("../../lib/geojson_utils"),c=t("../scatter/subtypes"),u=t("./style");function f(t,e){var r=t[0].trace;if(Array.isArray(r.locations))for(var n=o(r,e),i=r.locationmode,l=0;l<t.length;l++){var c=t[l],u=s(i,c.loc,n);c.lonlat=u?u.properties.ct:[a,a]}}e.exports=function(t,e,r){for(var o=0;o<r.length;o++)f(r[o],e.topojson);function s(t,e){t.lonlat[0]===a&&n.select(e).remove()}var h=e.layers.frontplot.select(".scatterlayer").selectAll("g.trace.scattergeo").data(r,function(t){return t[0].trace.uid});h.enter().append("g").attr("class","trace scattergeo"),h.exit().remove(),h.selectAll("*").remove(),h.each(function(e){var r=e[0].node3=n.select(this),a=e[0].trace;if(c.hasLines(a)||"none"!==a.fill){var o=l.calcTraceToLineCoords(e),f="none"!==a.fill?l.makePolygon(o):l.makeLine(o);r.selectAll("path.js-line").data([{geojson:f,trace:a}]).enter().append("path").classed("js-line",!0).style("stroke-miterlimit",2)}c.hasMarkers(a)&&r.selectAll("path.point").data(i.identity).enter().append("path").classed("point",!0).each(function(t){s(t,this)}),c.hasText(a)&&r.selectAll("g").data(i.identity).enter().append("g").append("text").each(function(t){s(t,this)}),u(t,e)})}},{"../../constants/numerical":702,"../../lib":724,"../../lib/geo_location_utils":716,"../../lib/geojson_utils":717,"../../lib/topojson_utils":750,"../scatter/subtypes":1070,"./style":1094,d3:128}],1093:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h)&&!n.hasText(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1094:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/drawing"),a=t("../../components/color"),o=t("../scatter/style").stylePoints;e.exports=function(t,e){e&&function(t,e){var r=e[0].trace,s=e[0].node3;s.style("opacity",e[0].trace.opacity),o(s,r,t),s.selectAll("path.js-line").style("fill","none").each(function(t){var e=n.select(this),r=t.trace,o=r.line||{};e.call(a.stroke,o.color).call(i.dashLine,o.dash||"",o.width||0),"none"!==r.fill&&e.call(a.fill,r.fillcolor)})}(t,e)}},{"../../components/color":598,"../../components/drawing":623,"../scatter/style":1069,d3:128}],1095:[function(t,e,r){"use strict";var n=t("../../plots/attributes"),i=t("../scatter/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../constants/gl2d_dashes"),s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=i.line,u=i.marker,f=u.line,h=e.exports=l({x:i.x,x0:i.x0,dx:i.dx,y:i.y,y0:i.y0,dy:i.dy,text:s({},i.text,{}),mode:{valType:"flaglist",flags:["lines","markers"],extras:["none"]},line:{color:c.color,width:c.width,dash:{valType:"enumerated",values:Object.keys(o),dflt:"solid"}},marker:s({},a("marker"),{symbol:u.symbol,size:u.size,sizeref:u.sizeref,sizemin:u.sizemin,sizemode:u.sizemode,opacity:u.opacity,showscale:u.showscale,colorbar:u.colorbar,line:s({},a("marker.line"),{width:f.width})}),connectgaps:i.connectgaps,fill:i.fill,fillcolor:i.fillcolor,hoveron:i.hoveron,selected:{marker:i.selected.marker},unselected:{marker:i.unselected.marker},opacity:s({},n.opacity,{editType:"calc"}),error_y:i.error_y,error_x:i.error_x},"calc","nested");h.x.editType=h.y.editType=h.x0.editType=h.y0.editType="calc+clearAxisTypes"},{"../../components/colorscale/color_attributes":606,"../../constants/gl2d_dashes":698,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../scatter/attributes":1048}],1096:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/xy_defaults"),s=t("../scatter/marker_defaults"),l=t("../scatter/line_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../../components/errorbars/defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=!!t.marker&&/-open/.test(t.marker.symbol),m=a.isBubble(t),v=o(t,e,h,d);if(v){d("text"),d("mode",v<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(d("connectgaps"),l(t,e,r,h,d));var g=[];a.hasMarkers(e)&&(s(t,e,r,h,d),d("marker.line.width",p||m?1:0),g.push("points")),d("fill"),"none"!==e.fill&&c(t,e,r,d),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),u(t,e,r,{axis:"y"}),u(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/xy_defaults":1072,"./attributes":1095}],1097:[function(t,e,r){(function(r){"use strict";var n=t("../../lib"),i=t("../scatter/get_trace_color"),a=t("../../components/errorbars"),o=t("object-assign"),s=t("../../plots/cartesian/axes"),l=t("kdgrass"),c=t("../../components/fx"),u=t("../scatter/subtypes"),f=t("../scatter/colorscale_calc"),h=t("../../components/drawing"),d=t("../scatter/make_bubble_size_func"),p=t("../../constants/gl2d_dashes"),m=t("../../lib/gl_format_color"),v=t("../scatter/link_traces"),g=t("regl-scatter2d"),y=t("regl-line2d"),b=t("regl-error2d"),x=t("color-normalize"),_=t("svg-path-sdf"),w=t("regl"),M=t("array-range"),k=t("../scatter/fill_hover_text"),A=t("fast-isnumeric"),T=c.constants.MAXDIST,E=200,S=20,L=S/20,C={},P=h.symbolFuncs[0](.05*S),z=1e5,O=/-dot/;function D(t,e,r,n){var 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t=this.map;t.removeLayer(this.idLayerFill),t.removeLayer(this.idLayerLine),t.removeLayer(this.idLayerCircle),t.removeLayer(this.idLayerSymbol),t.removeSource(this.idSourceFill),t.removeSource(this.idSourceLine),t.removeSource(this.idSourceCircle),t.removeSource(this.idSourceSymbol)},e.exports=function(t,e){var r=new i(t,e[0].trace.uid);return r.update(e),r}},{"./convert":1099}],1105:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1106:[function(t,e,r){"use strict";var n=t("../../lib/extend").extendFlat,i=t("../scatter/attributes"),a=t("../../plots/attributes"),o=i.line;e.exports={mode:i.mode,r:{valType:"data_array",editType:"calc+clearAxisTypes"},theta:{valType:"data_array",editType:"calc+clearAxisTypes"},thetaunit:{valType:"enumerated",values:["radians","degrees","gradians"],dflt:"degrees",editType:"calc+clearAxisTypes"},text:i.text,hovertext:i.hovertext,line:{color:o.color,width:o.width,dash:o.dash,shape:n({},o.shape,{values:["linear","spline"]}),smoothing:o.smoothing,editType:"calc"},connectgaps:i.connectgaps,marker:i.marker,cliponaxis:n({},i.cliponaxis,{dflt:!1}),textposition:i.textposition,textfont:i.textfont,fill:n({},i.fill,{values:["none","toself","tonext"]}),fillcolor:i.fillcolor,hoverinfo:n({},a.hoverinfo,{flags:["r","theta","text","name"]}),hoveron:i.hoveron,selected:i.selected,unselected:i.unselected}},{"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1107:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../../plots/cartesian/axes"),o=t("../scatter/colorscale_calc"),s=t("../scatter/arrays_to_calcdata"),l=t("../scatter/calc_selection"),c=t("../scatter/calc").calcMarkerSize;e.exports=function(t,e){var r,u=t._fullLayout,f=e.subplot,h=u[f].radialaxis,d=u[f].angularaxis,p=h.makeCalcdata(e,"r"),m=d.makeCalcdata(e,"theta"),v=e._length,g=new Array(v);for(var y=0;y<v;y++){var b=p[y],x=m[y],_=g[y]={};n(b)&&n(x)?(_.r=b,_.theta=x,_.rad=(r=x,d.c2rad(r,e.thetaunit))):_.r=i}var w=c(e,v);return a.expand(h,p,{ppad:w}),"linear"!==d.type&&(d.autorange=!0,a.expand(d,m),delete d.autorange),o(e),s(g,e),l(g,e),g}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/arrays_to_calcdata":1047,"../scatter/calc":1049,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1108:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/line_shape_defaults"),l=t("../scatter/text_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../scatter/constants").PTS_LINESONLY,f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=d("r"),m=d("theta"),v=p&&m?Math.min(p.length,m.length):0;if(v){e._length=v,d("thetaunit"),d("mode",v<u?"lines+markers":"lines"),d("text"),d("hovertext"),i.hasLines(e)&&(o(t,e,r,h,d),s(t,e,d),d("connectgaps")),i.hasMarkers(e)&&a(t,e,r,h,d,{gradient:!0}),i.hasText(e)&&l(t,e,h,d);var g=[];(i.hasMarkers(e)||i.hasText(e))&&(d("cliponaxis"),d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(c(t,e,r,d),i.hasLines(e)||s(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1106}],1109:[function(t,e,r){"use strict";var n=t("../scatter/hover"),i=t("../../plots/cartesian/axes"),a=t("../../lib");function o(t,e,r){var n=r.radialAxis,o=r.angularAxis,s=(t.hi||e.hoverinfo).split("+"),l=[];n._hovertitle="r",o._hovertitle="\u03b8";var c,u=o._c2rad(t.theta,e.thetaunit);function f(t,e){l.push(t._hovertitle+": "+i.tickText(t,e,"hover").text)}return c="linear"===o.type&&e.thetaunit!==o.thetaunit?"degrees"===o.thetaunit?a.rad2deg(u):u:t.theta,-1!==s.indexOf("all")&&(s=["r","theta"]),-1!==s.indexOf("r")&&f(n,n.c2r(t.r)),-1!==s.indexOf("theta")&&f(o,c),l.join("<br>")}e.exports={hoverPoints:function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var s=a[0];if(void 0===s.index)return a;var l=t.subplot,c=s.cd[s.index],u=s.trace;if(l.isPtWithinSector(c))return s.xLabelVal=void 0,s.yLabelVal=void 0,s.extraText=o(c,u,l),a}},makeHoverPointText:o}},{"../../lib":724,"../../plots/cartesian/axes":770,"../scatter/hover":1059}],1110:[function(t,e,r){"use strict";e.exports={moduleType:"trace",name:"scatterpolar",basePlotModule:t("../../plots/polar"),categories:["polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:t("./calc"),plot:t("./plot"),style:t("../scatter/style").style,hoverPoints:t("./hover").hoverPoints,selectPoints:t("../scatter/select"),meta:{}}},{"../../plots/polar":836,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1106,"./calc":1107,"./defaults":1108,"./hover":1109,"./plot":1111}],1111:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../constants/numerical").BADNUM;e.exports=function(t,e,r){var a,o,s,l={xaxis:e.xaxis,yaxis:e.yaxis,plot:e.framework,layerClipId:e._hasClipOnAxisFalse?e.clipIds.circle:null},c=e.radialAxis,u=c.range;for(s=u[0]>u[1]?function(t){return t<=0}:function(t){return t>=0},a=0;a<r.length;a++)for(o=0;o<r[a].length;o++){var f=r[a][o],h=f.r;if(h!==i){var d=c.c2r(h)-u[0];if(s(d)){var p=f.rad;f.x=d*Math.cos(p),f.y=d*Math.sin(p);continue}f.intoCenter=[e.cxx,e.cyy]}f.x=i,f.y=i}n(t,l,r)}},{"../../constants/numerical":702,"../scatter/plot":1067}],1112:[function(t,e,r){"use strict";var n=t("../scatterpolar/attributes"),i=t("../scattergl/attributes");e.exports={mode:n.mode,r:n.r,theta:n.theta,thetaunit:n.thetaunit,text:n.text,line:i.line,connectgaps:i.connectgaps,marker:i.marker,fill:i.fill,fillcolor:i.fillcolor,hoverinfo:n.hoverinfo,hoveron:n.hoveron,selected:n.selected,unselected:n.unselected}},{"../scattergl/attributes":1095,"../scatterpolar/attributes":1106}],1113:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/fillcolor_defaults"),l=t("../scatter/constants").PTS_LINESONLY,c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}var h=f("r"),d=f("theta"),p=h&&d?Math.min(h.length,d.length):0;if(p){e._length=p,f("thetaunit"),f("mode",p<l?"lines+markers":"lines"),f("text"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps"));var m=[];i.hasMarkers(e)&&(a(t,e,r,u,f),m.push("points")),f("fill"),"none"!==e.fill&&s(t,e,r,f),"tonext"!==e.fill&&"toself"!==e.fill||m.push("fills"),f("hoveron",m.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,f)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"./attributes":1112}],1114:[function(t,e,r){"use strict";var n=t("kdgrass"),i=t("fast-isnumeric"),a=t("../scattergl"),o=t("../scatter/colorscale_calc"),s=t("../../plots/cartesian/axes"),l=t("../scatterpolar/hover").makeHoverPointText,c=t("../scatter/subtypes");e.exports={moduleType:"trace",name:"scatterpolargl",basePlotModule:t("../../plots/polar"),categories:["gl","regl","polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:function(t,e){var r=t._fullLayout,n=e.subplot,i=r[n].radialaxis,a=r[n].angularaxis,l=i.makeCalcdata(e,"r"),c=a.makeCalcdata(e,"theta"),u={};return e._length<l.length&&(l=l.slice(0,e._length)),e._length<c.length&&(c=c.slice(0,e._length)),o(e),u.r=l,u.theta=c,s.expand(i,l,{tozero:!0}),"linear"!==a.type&&(a.autorange=!0,s.expand(a,c),delete a.autorange),[{x:!1,y:!1,t:u,trace:e}]},plot:function(t,e,r){var o=e.radialAxis,s=e.angularAxis,l=o.range,u=a.sceneUpdate(t,e);return u.clear(),r.forEach(function(f,h){if(f&&f[0]&&f[0].trace){var d,p,m,v,g,y=f[0],b=y.trace,x=y.t,_=x.r,w=x.theta,M=_.slice(),k=w.slice();for(d=0;d<_.length;d++)p=_[d],v=w[d],g=s.c2rad(v,b.thetaunit),e.isPtWithinSector({r:p,rad:g})||(M[d]=NaN,k[d]=NaN);var A,T=_.length,E=new Array(2*T),S=Array(T),L=Array(T);for(d=0;d<T;d++)p=M[d],v=k[d],i(p)&&i(v)&&p>=0?(m=o.c2r(p)-l[0],A=v,g=s.c2rad(A,b.thetaunit),S[d]=E[2*d]=m*Math.cos(g),L[d]=E[2*d+1]=m*Math.sin(g)):S[d]=L[d]=E[2*d]=E[2*d+1]=NaN;var C=a.sceneOptions(t,e,b,E);C.fill&&!u.fill2d&&(u.fill2d=!0),C.marker&&!u.scatter2d&&(u.scatter2d=!0),C.line&&!u.line2d&&(u.line2d=!0),!C.errorX&&!C.errorY||u.error2d||(u.error2d=!0),c.hasMarkers(b)&&(C.selected.positions=C.unselected.positions=C.marker.positions),u.lineOptions.push(C.line),u.errorXOptions.push(C.errorX),u.errorYOptions.push(C.errorY),u.fillOptions.push(C.fill),u.markerOptions.push(C.marker),u.selectedOptions.push(C.selected),u.unselectedOptions.push(C.unselected),u.count=r.length,x.scene=u,x.index=h,x.x=S,x.y=L,x.rawx=S,x.rawy=L,x.r=_,x.theta=w,x.positions=E,x.count=T,x.tree=n(E,512)}}),a.plot(t,e,r)},hoverPoints:function(t,e,r,n){var i=t.cd[0].t,o=i.r,s=i.theta,c=a.hoverPoints(t,e,r,n);if(c&&!1!==c[0].index){var u=c[0];if(void 0===u.index)return c;var f=t.subplot,h=f.angularAxis,d=u.cd[u.index],p=u.trace;if(d.r=o[u.index],d.theta=s[u.index],d.rad=h.c2rad(d.theta,p.thetaunit),f.isPtWithinSector(d))return u.xLabelVal=void 0,u.yLabelVal=void 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n=t("../../lib/extend").extendFlat;r.splitToPanels=function(t){var e=[0,0],r=n({},t,{key:"header",type:"header",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!0,values:t.calcdata.headerCells.values[t.specIndex],rowBlocks:t.calcdata.headerRowBlocks,calcdata:n({},t.calcdata,{cells:t.calcdata.headerCells})});return[n({},t,{key:"cells1",type:"cells",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),n({},t,{key:"cells2",type:"cells",page:1,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),r]},r.splitToCells=function(t){var e=function(t){var e=t.rowBlocks[t.page],r=e?e.rows[0].rowIndex:0,n=e?r+e.rows.length:0;return[r,n]}(t);return(t.values||[]).slice(e[0],e[1]).map(function(r,n){return{keyWithinBlock:n+("string"==typeof r&&r.match(/[<$&> 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n=t("../box/attributes"),i=t("../../lib/extend").extendFlat;e.exports={y:n.y,x:n.x,x0:n.x0,y0:n.y0,name:n.name,orientation:i({},n.orientation,{}),bandwidth:{valType:"number",min:0,editType:"calc"},scalegroup:{valType:"string",dflt:"",editType:"calc"},scalemode:{valType:"enumerated",values:["width","count"],dflt:"width",editType:"calc"},spanmode:{valType:"enumerated",values:["soft","hard","manual"],dflt:"soft",editType:"calc"},span:{valType:"info_array",items:[{valType:"any",editType:"calc"},{valType:"any",editType:"calc"}],editType:"calc"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},editType:"plot"},fillcolor:n.fillcolor,points:i({},n.boxpoints,{}),jitter:i({},n.jitter,{}),pointpos:i({},n.pointpos,{}),marker:n.marker,text:n.text,box:{visible:{valType:"boolean",dflt:!1,editType:"plot"},width:{valType:"number",min:0,max:1,dflt:.25,editType:"plot"},fillcolor:{valType:"color",editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"style"},editType:"plot"},meanline:{visible:{valType:"boolean",dflt:!1,editType:"plot"},color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"plot"},side:{valType:"enumerated",values:["both","positive","negative"],dflt:"both",editType:"plot"},selected:n.selected,unselected:n.unselected,hoveron:{valType:"flaglist",flags:["violins","points","kde"],dflt:"violins+points+kde",extras:["all"],editType:"style"}}},{"../../lib/extend":713,"../box/attributes":877}],1138:[function(t,e,r){"use 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r=t[0],a=r.t,s=r.trace,d=r.node3=n.select(this),p=c._numViolins,m="group"===c.violinmode&&p>1,v=a.bdPos=a.dPos*(1-c.violingap)*(1-c.violingroupgap)/(m?p:1),g=a.bPos=m?2*a.dPos*((a.num+.5)/p-.5)*(1-c.violingap):0;if(!0!==s.visible||a.empty)n.select(this).remove();else{var y=e[a.valLetter+"axis"],b=e[a.posLetter+"axis"],x="both"===s.side,_=x||"positive"===s.side,w=x||"negative"===s.side,M=s.box&&s.box.visible,k=s.meanline&&s.meanline.visible,A=c._violinScaleGroupStats[s.scalegroup];if(d.selectAll("path.violin").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","violin").each(function(t){var e,r,i,o,l,c,u,f,d=n.select(this),p=t.density,m=p.length,M=t.pos+g,k=b.c2p(M);switch(s.scalemode){case"width":e=A.maxWidth/v;break;case"count":e=A.maxWidth/v*(A.maxCount/t.pts.length)}if(_){for(u=new Array(m),l=0;l<m;l++)(f=u[l]={})[a.posLetter]=M+p[l].v/e,f[a.valLetter]=p[l].t;r=h(u)}if(w){for(u=new 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+
+
+
+// JavaScript used to power the Nextflow Report Template output.
+
+//
+// Converter methods
+//
+
+/**
+ * Converts a list of numbers in milli-units (mWh, mg,...) to base units (Wh, g)
+ * @param {ArrayLike} list An array with numbers
+ * @returns The array, with each value divided by 1000
+ */
+function norm_units( list ) {
+  return list?.map(v => v / 1000) ?? null;
+}
+
+/**
+ * Convert to readable units, optionally with a starting scope and a unit label
+ *
+ * @param {*} value The value to be converted
+ * @param {*} scope The current scope of the value
+ * @param {*} unit The unit of the value
+ * @returns Decimally shifted value
+ */
+function toReadableUnits(value, scope = '', unit = '') {
+  var scopes = ['p', 'n', 'u', 'm', '', 'K', 'M', 'G', 'T', 'P', 'E']; // Units: pico, nano, micro, milli, 0, Kilo, Mega, Giga, Tera, Peta, Exa
+  var scopeIndex = scopes.indexOf(scope);
+
+  while (value >= 1000 && scopeIndex < scopes.length - 1) {
+    value /= 1000;
+    scopeIndex++;
+  }
+  while (value <= 1 && scopeIndex > 0) {
+    value *= 1000;
+    scopeIndex--;
+  }
+
+  value = Math.round(value * 100) / 100;
+  return value + ' ' + scopes[scopeIndex] + unit;
+}
+
+
+/**
+ * Convert bytes to readable units, starting from a specified unit.
+ *
+ * @param {*} value The value to be converted (e.g., 1, 1024, etc.)
+ * @param {string} currentUnit The unit of the input value (default: 'B')
+ * @returns Bytes in a readable scope
+ */
+function toReadableByteUnits(value, currentUnit = 'B') {
+  var units = ['B', 'KB', 'MB', 'GB', 'TB', 'PB', 'EB']; // Units: Byte, Kilobyte, Megabyte, etc.
+  var unit_index = units.indexOf(currentUnit);
+
+  while (value >= 1024 && unit_index < units.length - 1) {
+    value /= 1024;
+    unit_index++;
+  }
+
+  return value + ' ' + units[unit_index];
+}
+
+/**
+ * Converts the given time to another unit of time
+ *
+ * @param {*} value The time as a number in original given unit
+ * @param {*} unit Given unit of time
+ * @param {*} targetUnit Unit of time to be converted to
+ * @return Number of converted time
+ */
+function convertTime(value, unit='ms', targetUnit='s') {
+    var units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years']   // Units of time
+    var steps = [1000.0, 1000.0, 1000.0, 60.0, 60.0, 24.0, 7.0, 4.35, 12.0]                // (Average) magnitude change between units
+
+    var givenUnitPos = units.indexOf(unit)
+    var targetUnitPos = units.indexOf(targetUnit)
+
+
+    // Obtain conversion rates in the given range
+    if (targetUnitPos > givenUnitPos) {
+      steps.slice(givenUnitPos, targetUnitPos).forEach( function(it) { value /= it} )
+    }
+    else if (targetUnitPos < givenUnitPos) {
+      steps.slice(targetUnitPos, givenUnitPos).forEach( function(it) { value *= it} )
+    }
+
+    return value
+}
+
+/**
+ * Converts a time value to a human-readable string
+ *
+ * @param {*} value The time as a number in original given unit
+ * @param {*} unit Given unit of time
+ * @param {*} smallestUnit The smallest unit to convert to
+ * @param {*} largestUnit The largest unit to convert to
+ * @param {*} threshold The minimum value for the conversion to be included in the output
+ * @return A human-readable string representation of the time value
+ */
+function toReadableTimeUnits(value, unit = 'ms', smallestUnit = 's', largestUnit = 'years', threshold = null) {
+  const units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years'];
+  const steps = [1000, 1000, 1000, 60, 60, 24, 7, 4.35, 12];
+
+  const smallestIdx = units.indexOf(smallestUnit);
+  const largestIdx = units.indexOf(largestUnit);
+  if (smallestIdx === -1 || largestIdx === -1) throw new Error("Unknown unit");
+
+  let remaining = convertTime(value, unit, units[largestIdx]);
+  let parts = [];
+
+  for (let i = largestIdx; i >= smallestIdx; i--) {
+    let unitValue;
+    if (i > smallestIdx) {
+      unitValue = Math.floor(remaining);
+      remaining = (remaining - unitValue) * steps[i - 1];
+    } else {
+      // For the smallest unit, keep up to 2 decimals
+      unitValue = Math.round(remaining * 100) / 100;
+      remaining = 0;
+    }
+
+    if ((threshold === null && unitValue > 0) || (threshold !== null && unitValue > threshold)) {
+      let label = (unitValue === 1 && ['days', 'weeks', 'months', 'years'].includes(units[i]))
+        ? units[i].slice(0, -1)
+        : units[i];
+      let formatted = parseFloat(unitValue).toString();
+      parts.push(`${formatted}${label}`);
+    }
+  }
+
+  // Carry-over: if the last unit is exactly the conversion factor, increment previous unit
+  if (parts.length && smallestIdx > 0) {
+    let lastPart = parts[parts.length - 1];
+    let lastValue = parseFloat(lastPart.replace(/[^\d.]/g, ''));
+    let lastUnit = lastPart.replace(/[\d.]/g, '');
+    let conversionFactor = steps[smallestIdx - 1];
+    if (lastValue === conversionFactor) {
+      parts.pop();
+      let prevPart = parts[parts.length - 1];
+      let prevNum = parseFloat(prevPart.replace(/[^\d.]/g, ''));
+      let prevUnit = prevPart.replace(/[\d.]/g, '');
+      let newPrev = prevNum + 1;
+      parts[parts.length - 1] = `${parseFloat(newPrev).toString()}${prevUnit}`;
+    }
+  }
+
+  return parts.length ? parts.join(' ') : `0${smallestUnit}`;
+}
+
+//
+// Render functions
+//
+
+/**
+ * Perform checks on the data before using other methods to process
+ *
+ * @param {*} data The data (number/string/...)
+ * @param {*} type Type of the data
+ * @param {function} parseFunction Function to parse the data
+ * @returns
+ */
+function check_data(data, type, parseFunction) {
+  if (type === 'sort') {
+    return parseFunction(data);
+  }
+  if($('#nf-table-humanreadable').val() == 'false'){
+    return data;
+  }
+  if (data == '-' || data == 0){
+    return data;
+  }
+  return null
+}
+
+/**
+ * Render CO2 equivalents in desired output format
+ *
+ * @param {*} value CO2 equivalents in milli-grams
+ * @param {*} type Type of the data
+ * @returns CO2 equivalents as a readable unit
+ */
+function make_co2e(value, type){
+  return check_data(value, type, parseFloat) ?? toReadableUnits(value, 'm', 'g');
+}
+
+/**
+ * Render energy in desired output format
+ *
+ * @param {*} mWh Energy in milli-Watt-hours
+ * @param {*} type Type of the data
+ * @returns Energy as a readable unit
+ */
+function make_energy(mWh, type){
+  return check_data(mWh, type, parseFloat) ?? toReadableUnits(mWh, 'm', 'Wh');
+}
+
+/**
+ * Render time in desired output format
+ *
+ * @param {*} h Time in hours
+ * @param {*} type Type of the data
+ * @returns The readable time
+ */
+function make_time(h, type){
+  return check_data(data, type, parseFloat) ?? toReadableTimeUnits(parseFloat(h), 'h', 'ms', 'days', 0.0);
+}
+
+/**
+ * Render carbon intensity in desired output format
+ *
+ * @param {*} ci Carbon intensity value
+ * @param {*} type Type of the data
+ * @returns Carbon intensity as a readable unit
+ */
+function make_carbon_intensity(ci, type) {
+  return check_data(data, type, parseFloat) ?? toReadableUnits(ci, 'm', 'gCO<sub>2</sub>e/kWh');
+}
+
+/**
+ * Render memory size in desired output format
+ *
+ * @param {*} value Memory value to be rendered
+ * @param {*} type Type of the data
+ * @param {string} unit The unit of the input value (default: 'B')
+ * @returns The memory at a readable scale
+ */
+function make_memory(value, type) {
+  return check_data(value, type, parseFloat) ?? toReadableByteUnits(value, 'GB');
+}
+
+/**
+ * Render the per core power draw in desired output format
+ *
+ * @param {*} powerDrawCPU Power draw of the CPU in Watts
+ * @param {*} type Type of the data
+ * @returns Readable power draw in Watts
+ */
+function make_power_draw_cpu(powerDrawCPU, type) {
+  return check_data(powerDrawCPU, type, parseFloat) ?? powerDrawCPU;
+}
+
+/**
+ * Render usage factor in desired output format
+ *
+ * @param {*} usageFactor Usage factor of CPU in percent
+ * @param {*} type Type of the data
+ * @returns Readable usage factor
+ */
+function make_core_usage_factor(usageFactor, type){
+  return check_data(usageFactor, type, parseFloat) ?? usageFactor;
+}
+
+// Map for collecting statistics by process
+window.statsByProcess = {};
+
+//
+// This block is only executed after the page is fully loaded
+//
+$(function() {
+  // Script block clicked
+  $('#tasks_table').on('click', '.script_block', function(e){
+    e.preventDefault();
+    $(this).toggleClass('short');
+  });
+
+  $(function() {
+    $('[data-toggle="tooltip"]').tooltip()
+  })
+
+  // Completed date from now
+  var completed_date = moment( $('#workflow_complete').text(), "ddd MMM DD HH:mm:ss .* YYYY" );
+  if(completed_date.isValid()){
+    $('#completed_fromnow').html('completed ' + completed_date.fromNow() + ', ');
+  }
+
+  // Collect metrics by process
+  for(let processName in window.data.summary){
+    let metrics = window.data.summary[processName];
+
+    // Add an empty map if the process is not already present
+    window.statsByProcess[processName] ??= {};
+
+    for (let metricName in metrics) {
+      // Skip if metric is not present
+      if (metrics[metricName] == null) { continue; }
+
+      if( metrics[metricName]['min'] == metrics[metricName]['max'] ) {
+        // min equals max ==> show just a value
+        window.statsByProcess[processName][metricName] = [ metrics[metricName]['min'] ];
+      }
+      else {
+          // otherwise show all values
+          window.statsByProcess[processName][metricName] = ['min', 'q1', 'q2', 'q3', 'max'].map(stat => metrics[metricName][stat])
+      }
+      if (metricName == "time") {
+        window.statsByProcess[processName][metricName] = window.statsByProcess[processName][metricName].map(function(d,i){
+          return moment.duration(d).asMinutes().toFixed(1);
+        });
+      }
+    }
+  }
+
+  // Plot histograms of resource usage
+  var plot_data_total = [];
+  var plot_data_non_cached = [];
+  for(var processName in window.statsByProcess){
+
+    // Extract process statistics
+    var stats = window.statsByProcess[processName];
+
+    // Add CO2 Boxplot to plot
+    plot_data_total.push(
+      {
+        x:processName, y: norm_units(stats.co2e), name: processName,
+        type:'box', boxmean: true, boxpoints: false
+      }
+    );
+
+    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
+    plot_data_total.push(
+      {
+        x:processName, y: norm_units(stats.energy), name: processName,
+        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
+        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
+      }
+    );
+
+    // Add outline of CO2 emissions from non-cached processes to plot
+    plot_data_non_cached.push(
+      {
+        x:processName, y: norm_units(stats.co2e_non_cached), name: processName,
+        type:'box', boxmean: true, boxpoints: false,
+      }
+    );
+
+    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
+    plot_data_non_cached.push(
+      {
+        x:processName, y: norm_units(stats.energy_non_cached), name: processName,
+        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
+        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
+      }
+    );
+  }
+
+  var layout = {
+    title: 'CO<sub>2</sub> emission & energy consumption',
+    legend: {
+      x: 1.1
+    },
+    xaxis: {
+      title: 'Processes',
+    },
+    yaxis: {
+      title: 'CO2e emission (g)',
+      rangemode: 'tozero',
+    },
+    yaxis2: {
+      title: 'Energy consumption (Wh)',
+      rangemode: 'tozero',
+      gridcolor: 'rgba(0, 0, 0, 0)', // transparent grid lines
+      overlaying: 'y',
+      side: 'right',
+    },
+    boxmode: 'group',
+  };
+
+  Plotly.newPlot('co2e-total-plot', plot_data_total, layout);
+  Plotly.newPlot('co2e-non-cached-plot', plot_data_non_cached, layout);
+
+  //
+  // Table creation functions
+  //
+
+  /**
+   * Function to create the table of tasks
+   */
+  function make_tasks_table(){
+    // reset
+      if ( $.fn.dataTable.isDataTable( '#tasks_table' ) ) {
+        $('#tasks_table').DataTable().destroy();
+      }
+
+      // Column titles
+      var energyConsumptionTitle = 'energy consumption (mWh)'; // Default column title
+      var co2EmissionsTitle = 'CO₂e emissions (mg)';
+      if ($('#nf-table-humanreadable').val() == 'true') {
+        energyConsumptionTitle = 'energy consumption'; // Change the column title if the button is selected
+        co2EmissionsTitle = 'CO₂e emissions';
+      }
+
+      var table = $('#tasks_table').DataTable({
+        data: window.data.trace,
+        columns: [
+          { title: 'task_id', data: 'task_id' },
+          { title: 'process', data: 'process' },
+          { title: 'tag', data: 'tag' },
+          { title: 'status', data: 'status', render: function(data, type, row){
+              var s = {
+                COMPLETED: 'success',
+                CACHED: 'secondary',
+                ABORTED: 'danger',
+                FAILED: 'danger'
+              }
+              return '<span class="badge badge-'+s[data]+'">'+data+'</span>';
+            }
+          },
+          { title: 'hash', data: 'hash', render:  function(data, type, row){
+              var script = '';
+              var lines = data.split("\n");
+              var ws_re = /^(\s+)/g;
+              var flws_match = ws_re.exec(lines[1]);
+              if(flws_match == null){
+                script = data;
+              } else {
+                for(var j=0; j<lines.length; j++){
+                  script += lines[j].replace(new RegExp('^'+flws_match[1]), '').replace(/\s+$/,'') + "\n";
+                }
+              }
+              return '<code>'+script+'</code>';
+            }
+          },
+          { title: energyConsumptionTitle, data: 'energy', type: 'num', render: make_energy },
+          { title: co2EmissionsTitle, data: 'co2e', type: 'num', render: make_co2e },
+          { title: `${co2EmissionsTitle} (market)`, data: 'co2eMarket', type: 'num', render: make_co2e },
+          { title: 'carbon intensity', data: 'ci', type: 'num', render: make_carbon_intensity },
+          { title: 'allocated cpus', data: 'cpus', type: 'num' },
+          { title: '%cpu', data: 'cpuUsage', type: 'num', render: make_core_usage_factor },
+          { title: 'allocated memory', data: 'memory', type: 'num', render: make_memory },
+          { title: 'realtime', data: 'time', type: 'num', render: make_time },
+          { title: 'power draw (in W/core)', data: 'powerdrawCPU', type: 'num', render: make_power_draw_cpu },
+          { title: 'cpu model', data: 'cpu_model' },
+        ],
+        "deferRender": true,
+        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
+        "scrollX": true,
+        "colReorder": true,
+        "columnDefs": [
+          { className: "id", "targets": [ 0,1,2,3 ] },
+          { className: "meta", "targets": [ 4,7,8,9,10,11 ] },
+          { className: "metrics", "targets": [ 5,6 ] }
+        ],
+        "buttons": [
+          {
+            extend: 'colvisGroup',
+            text: 'Metrics',
+            show: [ '.id', '.metrics' ],
+            hide: [ '.meta' ],
+          },
+          {
+            extend: 'colvisGroup',
+            text: 'Metadata',
+            show: [ '.id', '.meta'],
+            hide: [ '.metrics' ],
+          },
+          {
+            extend: 'colvisGroup',
+            text: 'All',
+            show: ':hidden',
+          },
+        ]
+      });
+
+      // Insert column filter button group
+      table.buttons().container()
+        .prependTo( $('#tasks_table_filter') );
+
+      // Column filter button group onClick event to highlight active filter
+      $('.buttons-colvisGroup').click(function(){
+        var def = 'btn-secondary';
+        var sel = 'btn-primary';
+        $('.buttons-colvisGroup').removeClass(sel).addClass(def);
+        $(this).addClass(sel).removeClass(def);
+      });
+
+      // Default filter highlight
+      $(".buttons-colvisGroup:contains('All')").click();
+  }
+
+  // Executor for task table creation (on page load)
+  if( window.data.trace==null ) {
+      // Hide tasks table if too many tasks are present
+      $('#tasks-present-table').remove()
+  }
+  else {
+      $('#tasks-omitted-table').remove()
+      // Dropdown changed about raw / human readable values in table
+      $('#nf-table-humanreadable').change(function(){
+        make_tasks_table();
+      });
+      // Make the table on page load
+      make_tasks_table();
+  }
+
+  /**
+   * Function to create the table of options / configurations
+   */
+  function make_options_table(){
+    // reset
+    if ( $.fn.dataTable.isDataTable( '#options_table' ) ) {
+      $('#options_table').DataTable().destroy();
+    }
+
+    var table = $('#options_table').DataTable({
+      data: window.options,
+      columns: [
+          { title: "Option", data: "option" },
+          { title: "Value", data: "value" }
+        ],
+        "deferRender": true,
+        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
+    });
+  }
+
+  // Executor for options table creation (on page load)
+  make_options_table();
+});
+
+  // Nextflow report data
+  window.data = {"trace":[{"task_id":"6","hash":"63\/c1b5a4","native_id":"3942212","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:13.894","start":"2025-10-17 15:38:13.966","complete":"2025-10-17 15:38:15.371","duration":"1.5s","realtime":"0ms","%cpu":"35.4%","%mem":"0.0%","rss":"3 MB","vmem":"5.4 MB","peak_rss":"3 MB","peak_vmem":"5.4 MB","rchar":"74.8 KB","wchar":"3.5 KB","syscr":"201","syscw":"105","read_bytes":"52 KB","write_bytes":"4.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/63\/c1b5a4228808870070d846151335af","script":"\n    famsa -gt_export \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_FAMSA-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"35.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"13","hash":"b2\/868270","native_id":"3942234","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"toxin-ref args: -gt_upgma_-medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:13.913","start":"2025-10-17 15:38:13.985","complete":"2025-10-17 15:38:15.462","duration":"1.5s","realtime":"0ms","%cpu":"41.5%","%mem":"0.0%","rss":"2.9 MB","vmem":"5.4 MB","peak_rss":"2.9 MB","peak_vmem":"5.4 MB","rchar":"78.5 KB","wchar":"3.7 KB","syscr":"201","syscw":"105","read_bytes":"0","write_bytes":"4.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b2\/868270283d98027f9195c5b3e8945f","script":"\n    famsa -gt_export \\\n        -gt upgma -medoidtree \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"16","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 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MB","peak_vmem":"1.1 GB","rchar":"15.7 MB","wchar":"623 B","syscr":"1384","syscw":"19","read_bytes":"18.6 MB","write_bytes":"4.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/d7\/9634ad5f79a0a0b7f3e953d2efa223","script":"\n    calc_seqstats.py seatoxin-ref         setoxin-ref.fa         \"seatoxin-ref_seqstats.csv\"         \"seatoxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"548","inv_ctxt":"327","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"5.657291440375","co2e":"2.71549989138","co2eMarket":"-","time":"8.333333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"69.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"1","hash":"04\/d2fa32","native_id":"3942285","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR","module":"-","container":"community.wave.seqera.io\/library\/coreutils_grep_gzip_lbzip2_pruned:838ba80435a629f8","tag":"seatoxin-ref.tar.gz","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:13.956","start":"2025-10-17 15:38:14.000","complete":"2025-10-17 15:38:15.890","duration":"1.9s","realtime":"211ms","%cpu":"38.6%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.6 MB","peak_rss":"3.2 MB","peak_vmem":"4.6 MB","rchar":"721.2 KB","wchar":"684.8 KB","syscr":"323","syscw":"74","read_bytes":"144 KB","write_bytes":"223.5 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/04\/d2fa32297709021c35bbbac3d3a68e","script":"\n    mkdir seatoxin-ref\n\n    ## Ensures --strip-components only applied when top level of tar contents is a directory\n    ## If just files or multiple directories, place all in prefix\n    if [[ $(tar -taf seatoxin-ref.tar.gz | grep -o -P \"^.*?\\\/\" | uniq | wc -l) -eq 1 ]]; then\n        tar \\\n            -C seatoxin-ref --strip-components 1 \\\n            -xavf \\\n             \\\n            seatoxin-ref.tar.gz \\\n            \n    else\n        tar \\\n            -C seatoxin-ref \\\n            -xavf \\\n             \\\n            seatoxin-ref.tar.gz \\\n            \n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR\":\n        untar: $(echo $(tar --version 2>&1) | sed \'s\/^.*(GNU tar) \/\/; s\/ Copyright.*$\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.249316966625","co2e":"0.11967214398","co2eMarket":"-","time":"5.86111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"38.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"11","hash":"09\/3b3d9c","native_id":"3942456","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/mafft:7.525--h031d066_1","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:15.402","start":"2025-10-17 15:38:15.482","complete":"2025-10-17 15:38:17.791","duration":"2.4s","realtime":"1s","%cpu":"48.5%","%mem":"0.0%","rss":"6 MB","vmem":"8.6 MB","peak_rss":"6 MB","peak_vmem":"8.6 MB","rchar":"1010.4 KB","wchar":"9.8 KB","syscr":"1531","syscw":"141","read_bytes":"60 KB","write_bytes":"22.5 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/09\/3b3d9cc763bf3ae1090e0b4c959a95","script":"\n    mafft \\\n        --thread 2 \\\n        --retree 0 \\\n         \\\n        --treeout toxin-ref.fa > log.txt\n\n    mv *.tree toxin-ref_MAFFT-args-default.dnd.tmp\n\n    # remove all prefixes added by mafft which make the output incompatible with other tools\n    awk \'{gsub(\/^[0-9]+_\/, \"\"); print}\' toxin-ref_MAFFT-args-default.dnd.tmp > toxin-ref_MAFFT-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"21","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.405034834625","co2e":"0.67441672062","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"48.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"8","hash":"91\/391252","native_id":"3942471","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/mafft:7.525--h031d066_1","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:15.486","start":"2025-10-17 15:38:15.564","complete":"2025-10-17 15:38:17.728","duration":"2.2s","realtime":"1s","%cpu":"52.6%","%mem":"0.0%","rss":"6.3 MB","vmem":"8.6 MB","peak_rss":"6.3 MB","peak_vmem":"8.6 MB","rchar":"998.4 KB","wchar":"4.1 KB","syscr":"1531","syscw":"140","read_bytes":"100 KB","write_bytes":"20.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/91\/391252a674316c7f6ee8e6a7dbf771","script":"\n    mafft \\\n        --thread 2 \\\n        --retree 0 \\\n         \\\n        --treeout setoxin-ref.fa > log.txt\n\n    mv *.tree seatoxin-ref_MAFFT-args-default.dnd.tmp\n\n    # remove all prefixes added by mafft which make the output incompatible with other tools\n    awk \'{gsub(\/^[0-9]+_\/, \"\"); print}\' seatoxin-ref_MAFFT-args-default.dnd.tmp > seatoxin-ref_MAFFT-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"19","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.49756956425","co2e":"0.71883339084","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"52.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"3","hash":"cc\/9ed30f","native_id":"3942564","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:15.906","start":"2025-10-17 15:38:15.991","complete":"2025-10-17 15:38:18.651","duration":"2.7s","realtime":"1s","%cpu":"60.3%","%mem":"0.1%","rss":"10.6 MB","vmem":"16.9 MB","peak_rss":"10.6 MB","peak_vmem":"16.9 MB","rchar":"4.3 MB","wchar":"481 B","syscr":"909","syscw":"21","read_bytes":"2.9 MB","write_bytes":"4.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/cc\/9ed30f4fe47653c9fc382cf6f57b72","script":"\n    py_fasta_validator \\\n        -f setoxin-ref.fa \\\n        2> \"seatoxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to seatoxin-ref.error.log\"\n\n    if [ $(cat \"seatoxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"seatoxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"seatoxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"seatoxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"45","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.671354300375","co2e":"0.80225006418","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"60.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"9","hash":"18\/15794f","native_id":"3943002","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-27978155697a3671f3ef9aead4b5c823a02cc0b7:548df772fe13c0232a7eab1bc1deb98b495a05ab-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:17.738","start":"2025-10-17 15:38:17.792","complete":"2025-10-17 15:38:21.349","duration":"3.6s","realtime":"2s","%cpu":"99.0%","%mem":"1.0%","rss":"78.3 MB","vmem":"1.1 GB","peak_rss":"78.3 MB","peak_vmem":"1.1 GB","rchar":"15.7 MB","wchar":"882 B","syscr":"1384","syscw":"19","read_bytes":"4 KB","write_bytes":"4.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/18\/15794f34b664c1cb5423e7887022cb","script":"\n    calc_seqstats.py toxin-ref         toxin-ref.fa         \"toxin-ref_seqstats.csv\"         \"toxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"26","inv_ctxt":"449","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"5.0895837405","co2e":"2.44300019544","co2eMarket":"-","time":"5.555556E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"99.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"10","hash":"9c\/4a6d30","native_id":"3943021","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:17.802","start":"2025-10-17 15:38:17.891","complete":"2025-10-17 15:38:19.735","duration":"1.9s","realtime":"1s","%cpu":"33.9%","%mem":"0.1%","rss":"7 MB","vmem":"14.2 MB","peak_rss":"7 MB","peak_vmem":"14.2 MB","rchar":"167.7 KB","wchar":"17.2 KB","syscr":"396","syscw":"30","read_bytes":"52 KB","write_bytes":"28.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/9c\/4a6d301f5fefb83d28022415fa5665","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > \"toxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"29","inv_ctxt":"4","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.075520919375","co2e":"0.5162500413","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"33.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"14","hash":"c6\/adef86","native_id":"3943153","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:18.386","start":"2025-10-17 15:38:18.468","complete":"2025-10-17 15:38:20.190","duration":"1.8s","realtime":"0ms","%cpu":"53.8%","%mem":"0.0%","rss":"3.1 MB","vmem":"5.4 MB","peak_rss":"3.1 MB","peak_vmem":"5.4 MB","rchar":"75.9 KB","wchar":"3 KB","syscr":"201","syscw":"75","read_bytes":"0","write_bytes":"4.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/c6\/adef86ad2990167cbfae0be810c265","script":"\n    famsa -gt_export \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_FAMSA-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"4","hash":"b8\/c1b643","native_id":"3943203","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:18.663","start":"2025-10-17 15:38:18.752","complete":"2025-10-17 15:38:20.729","duration":"2.1s","realtime":"1s","%cpu":"35.2%","%mem":"0.0%","rss":"3.2 MB","vmem":"5.4 MB","peak_rss":"3.2 MB","peak_vmem":"5.4 MB","rchar":"147.6 KB","wchar":"1.7 KB","syscr":"396","syscw":"26","read_bytes":"0","write_bytes":"13.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b8\/c1b643d8a8f06cef54d801c4a35184","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in setoxin-ref.fa         -output=sim_idscore         > \"seatoxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"4","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.1048611995","co2e":"0.53033337576","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"35.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"12","hash":"84\/935af3","native_id":"3943314","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:19.800","start":"2025-10-17 15:38:19.835","complete":"2025-10-17 15:38:21.590","duration":"1.8s","realtime":"0ms","%cpu":"48.9%","%mem":"0.1%","rss":"8.1 MB","vmem":"85.9 MB","peak_rss":"8.1 MB","peak_vmem":"148.4 MB","rchar":"70.4 KB","wchar":"2.7 KB","syscr":"174","syscw":"18","read_bytes":"80 KB","write_bytes":"4.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/84\/935af333d51426c239c5ad2065feb0","script":"\n    clustalo \\\n        -i toxin-ref.fa \\\n        --guidetree-out toxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"34","inv_ctxt":"32","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"48.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"5","hash":"f5\/bf27a4","native_id":"3943396","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"seatoxin-ref args: -gt_upgma_-medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:20.208","start":"2025-10-17 15:38:20.290","complete":"2025-10-17 15:38:22.043","duration":"1.8s","realtime":"0ms","%cpu":"45.9%","%mem":"0.0%","rss":"2.9 MB","vmem":"5.4 MB","peak_rss":"2.9 MB","peak_vmem":"5.4 MB","rchar":"77.4 KB","wchar":"3.5 KB","syscr":"201","syscw":"105","read_bytes":"0","write_bytes":"4.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/f5\/bf27a4ac87ab0098fcfd1a47f7cd0c","script":"\n    famsa -gt_export \\\n        -gt upgma -medoidtree \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"45.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"7","hash":"15\/5f2ac1","native_id":"3943479","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:20.770","start":"2025-10-17 15:38:20.829","complete":"2025-10-17 15:38:22.552","duration":"1.8s","realtime":"0ms","%cpu":"59.0%","%mem":"0.0%","rss":"3 MB","vmem":"5.4 MB","peak_rss":"3 MB","peak_vmem":"5.4 MB","rchar":"68.1 KB","wchar":"833 B","syscr":"174","syscw":"18","read_bytes":"0","write_bytes":"4.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/15\/5f2ac15c26656afd4c1eda1bb79f9c","script":"\n    clustalo \\\n        -i setoxin-ref.fa \\\n        --guidetree-out seatoxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"59.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"15","hash":"ac\/f17128","native_id":"3943722","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:21.366","start":"2025-10-17 15:38:21.450","complete":"2025-10-17 15:38:23.512","duration":"2.1s","realtime":"1s","%cpu":"71.8%","%mem":"0.1%","rss":"12.7 MB","vmem":"19.2 MB","peak_rss":"12.7 MB","peak_vmem":"19.2 MB","rchar":"4.3 MB","wchar":"481 B","syscr":"909","syscw":"21","read_bytes":"0","write_bytes":"4.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ac\/f171288f49a5b075a7dded3a2e428b","script":"\n    py_fasta_validator \\\n        -f toxin-ref.fa \\\n        2> \"toxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to toxin-ref.error.log\"\n\n    if [ $(cat \"toxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"toxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"toxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"toxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"17","inv_ctxt":"61","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.93090293225","co2e":"0.92683340748","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"71.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"16","hash":"44\/242579","native_id":"3943778","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"seatoxin-ref tree: FAMSA","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:21.625","start":"2025-10-17 15:38:21.690","complete":"2025-10-17 15:38:30.399","duration":"8.8s","realtime":"7s","%cpu":"83.5%","%mem":"0.5%","rss":"47.2 MB","vmem":"276.9 MB","peak_rss":"47.2 MB","peak_vmem":"276.9 MB","rchar":"17.5 MB","wchar":"224.3 KB","syscr":"16614","syscw":"2548","read_bytes":"5.9 MB","write_bytes":"659.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/44\/242579aeaefb8a4cd6a2639d6afde8","script":"\n    magus \\\n        -np 2 \\\n        -i setoxin-ref.fa \\\n        -d .\/ \\\n        -o seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln \\\n        -t seatoxin-ref_FAMSA-args-default.dnd \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"805","inv_ctxt":"358","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"15.36475659325","co2e":"7.37508316476","co2eMarket":"-","time":"0.0019444444","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"83.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"17","hash":"8e\/dcc998","native_id":"3943874","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:22.067","start":"2025-10-17 15:38:22.144","complete":"2025-10-17 15:38:23.901","duration":"1.8s","realtime":"0ms","%cpu":"126.3%","%mem":"0.1%","rss":"7.3 MB","vmem":"1.1 GB","peak_rss":"7.3 MB","peak_vmem":"1.1 GB","rchar":"89.7 KB","wchar":"5.6 KB","syscr":"210","syscw":"115","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/8e\/dcc998ecad069c29fd35191bea9d21","script":"\n    famsa -gt import toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd \\\n         \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"15","inv_ctxt":"19","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"126.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"20","hash":"02\/b5d862","native_id":"3944000","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:22.578","start":"2025-10-17 15:38:22.711","complete":"2025-10-17 15:38:24.922","duration":"2.3s","realtime":"1s","%cpu":"39.9%","%mem":"0.1%","rss":"6.8 MB","vmem":"14.2 MB","peak_rss":"6.8 MB","peak_vmem":"14.2 MB","rchar":"934.5 KB","wchar":"234.5 KB","syscr":"582","syscw":"45","read_bytes":"292 KB","write_bytes":"255.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/02\/b5d86213fa1b24e35aefc01333ff23","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1sh1.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1sh1.pdb                  > \"1sh1.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"33","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.210937596875","co2e":"0.5812500465","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"22","hash":"4a\/6cc074","native_id":"3944086","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:23.540","start":"2025-10-17 15:38:23.611","complete":"2025-10-17 15:38:26.060","duration":"2.5s","realtime":"1s","%cpu":"49.0%","%mem":"0.0%","rss":"2.9 MB","vmem":"5.4 MB","peak_rss":"2.9 MB","peak_vmem":"5.4 MB","rchar":"928.2 KB","wchar":"232.1 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"252.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/4a\/6cc074951a9bda6d270d34a06fb4f2","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1ahl.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1ahl.pdb                  > \"1ahl.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"8","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.41631955775","co2e":"0.67983338772","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"49.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"18","hash":"cd\/57377d","native_id":"3944155","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:23.917","start":"2025-10-17 15:38:24.002","complete":"2025-10-17 15:38:26.418","duration":"2.5s","realtime":"0ms","%cpu":"44.4%","%mem":"0.0%","rss":"3.1 MB","vmem":"5.4 MB","peak_rss":"3.1 MB","peak_vmem":"5.4 MB","rchar":"941.3 KB","wchar":"237 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"257.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/cd\/57377dc490458f4171954b893aed55","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1apf.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1apf.pdb                  > \"1apf.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"21","hash":"e4\/9d98f8","native_id":"3944284","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:24.968","start":"2025-10-17 15:38:25.023","complete":"2025-10-17 15:38:27.385","duration":"2.4s","realtime":"0ms","%cpu":"50.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"5.4 MB","peak_rss":"3.1 MB","peak_vmem":"5.4 MB","rchar":"904.5 KB","wchar":"223.2 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"243.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/e4\/9d98f850d8eb17ba549b1fb3acbee6","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1atx.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1atx.pdb                  > \"1atx.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"9","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"50.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"19","hash":"95\/7af10d","native_id":"3944452","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:26.077","start":"2025-10-17 15:38:26.159","complete":"2025-10-17 15:38:28.002","duration":"1.9s","realtime":"0ms","%cpu":"53.2%","%mem":"0.1%","rss":"7 MB","vmem":"14.2 MB","peak_rss":"7 MB","peak_vmem":"14.2 MB","rchar":"899.2 KB","wchar":"221.3 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"241.9 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/95\/7af10dd098fd25836311414adc5f45","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1bds.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1bds.pdb                  > \"1bds.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"33","inv_ctxt":"27","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"23","hash":"7f\/41a79a","native_id":"3944527","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:26.439","start":"2025-10-17 15:38:26.518","complete":"2025-10-17 15:38:27.926","duration":"1.5s","realtime":"78ms","%cpu":"50.0%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"145 KB","wchar":"1.5 KB","syscr":"330","syscw":"33","read_bytes":"64 KB","write_bytes":"170 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7f\/41a79a3f057ca25d5fd125920bd18f","script":"\n    echo \"toxin-ref\" > tmp\n    grep ^TOT toxin-ref.txt | cut -f4 >> tmp\n    #remove empty spaces\n    sed -i \'s\/ \/\/g\' tmp\n\n    echo \"id,perc_sim\" > toxin-ref.sim_tot\n    cat tmp | tr \'\\n\' \',\' | awk \'gsub(\/,$\/,x)\' >>  toxin-ref.sim_tot\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n        cat: $(echo $(cat --version 2>&1) | sed \'s\/^.*coreutils) \/\/; s\/ .*$\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"14","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.112233506","co2e":"0.05387208288","co2eMarket":"-","time":"2.16667E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"50.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"24","hash":"52\/5f8a8e","native_id":"3944665","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"toxin-ref tree: FAMSA","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:27.400","start":"2025-10-17 15:38:27.485","complete":"2025-10-17 15:38:35.460","duration":"8.1s","realtime":"6s","%cpu":"91.9%","%mem":"0.6%","rss":"51.6 MB","vmem":"282.2 MB","peak_rss":"51.6 MB","peak_vmem":"282.2 MB","rchar":"18 MB","wchar":"595.7 KB","syscr":"16671","syscw":"5270","read_bytes":"0","write_bytes":"874.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/52\/5f8a8ee1e74371e2e2ba9178b4135a","script":"\n    magus \\\n        -np 2 \\\n        -i toxin-ref.fa \\\n        -d .\/ \\\n        -o toxin-ref_FAMSA-args-default_MAGUS-args-default.aln \\\n        -t toxin-ref_FAMSA-args-default.dnd \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"475","inv_ctxt":"456","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"14.3072919528125","co2e":"6.86750013735","co2eMarket":"-","time":"0.0016666667","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"91.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"25","hash":"69\/45937d","native_id":"3944726","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:27.934","start":"2025-10-17 15:38:28.003","complete":"2025-10-17 15:38:30.109","duration":"2.2s","realtime":"149ms","%cpu":"28.4%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"129.5 KB","wchar":"1.5 KB","syscr":"330","syscw":"33","read_bytes":"0","write_bytes":"179 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/69\/45937d045598995cc9a6db67e7619d","script":"\n    echo \"seatoxin-ref\" > tmp\n    grep ^TOT seatoxin-ref.txt | cut -f4 >> tmp\n    #remove empty spaces\n    sed -i \'s\/ \/\/g\' tmp\n\n    echo \"id,perc_sim\" > seatoxin-ref.sim_tot\n    cat tmp | tr \'\\n\' \',\' | awk \'gsub(\/,$\/,x)\' >>  seatoxin-ref.sim_tot\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n        cat: $(echo $(cat --version 2>&1) | sed \'s\/^.*coreutils) \/\/; s\/ .*$\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"11","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.1417569825","co2e":"0.0680433516","co2eMarket":"-","time":"4.13889E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"28.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"26","hash":"02\/8e36da","native_id":"3944741","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/csvtk:0.31.0--h9ee0642_0","tag":"summary_seqstats","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:28.029","start":"2025-10-17 15:38:28.101","complete":"2025-10-17 15:38:30.184","duration":"2.2s","realtime":"0ms","%cpu":"47.6%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"73.9 KB","wchar":"531 B","syscr":"186","syscw":"19","read_bytes":"16 KB","write_bytes":"209 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/02\/8e36da97c40755ab69095a27066935","script":"\n    csvtk \\\n        concat \\\n         \\\n        --num-cpus 2 \\\n        --delimiter \",\" \\\n        --out-delimiter \",\" \\\n        --out-file summary_seqstats.csv \\\n        inputs\/csv1\/seatoxin-ref_seqstats_summary.csv inputs\/csv2\/toxin-ref_seqstats_summary.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS\":\n        csvtk: $(echo $( csvtk version | sed -e \"s\/csvtk v\/\/g\" ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"47.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"27","hash":"1c\/6d6917","native_id":"3945040","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref tree: CLUSTALO  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:30.116","start":"2025-10-17 15:38:30.184","complete":"2025-10-17 15:38:32.394","duration":"2.3s","realtime":"0ms","%cpu":"46.1%","%mem":"0.1%","rss":"7.8 MB","vmem":"13.4 MB","peak_rss":"7.8 MB","peak_vmem":"13.4 MB","rchar":"694.1 KB","wchar":"29 KB","syscr":"802","syscw":"118","read_bytes":"684 KB","write_bytes":"93.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/1c\/6d691772dc7257a4904d7f6b001b54","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq toxin-ref.fa         -reg_tree toxin-ref_CLUSTALO-args-default.dnd                  -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"58","inv_ctxt":"18","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"46.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"28","hash":"5f\/949425","native_id":"3945071","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:30.202","start":"2025-10-17 15:38:30.284","complete":"2025-10-17 15:38:31.785","duration":"1.6s","realtime":"0ms","%cpu":"53.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"88.3 KB","wchar":"4.1 KB","syscr":"210","syscw":"115","read_bytes":"0","write_bytes":"401 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5f\/949425e8cc31c5e46ddbd916fe208f","script":"\n    famsa -gt import seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd \\\n         \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"31","hash":"7a\/7de8b8","native_id":"3945132","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-5cd0277547c6b33133225c8ce14c0cf2a4396ea2:0a70b6d89a3e06fbdc4a735461e8b98ff32ee5de-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:30.419","start":"2025-10-17 15:38:30.502","complete":"2025-10-17 15:38:32.025","duration":"1.6s","realtime":"0ms","%cpu":"47.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"106.8 KB","wchar":"2 KB","syscr":"248","syscw":"33","read_bytes":"80 KB","write_bytes":"397 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7a\/7de8b8bffc97f8a9aa0da39046eaf6","script":"\n    error_handler() {\n    exit_code=$?\n        if [ $exit_code -eq 132 ]; then\n            echo \"KALIGN failed because is incompatible with some CPU types, see https:\/\/github.com\/TimoLassmann\/kalign\/issues\/46.\"\n        else\n            trap - ERR\n            return $exit_code\n        fi\n    }\n\n    trap \'error_handler\' ERR\n\n    unpigz -cdf setoxin-ref.fa | \\\n    kalign \\\n         \\\n        -n 2 \\\n        -o seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN\":\n        kalign: $(echo $(kalign -v) | sed \'s\/kalign \/\/g\' )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"47.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"29","hash":"05\/d3df2e","native_id":"3945301","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref tree: CLUSTALO  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:31.802","start":"2025-10-17 15:38:31.885","complete":"2025-10-17 15:38:34.031","duration":"2.2s","realtime":"1s","%cpu":"43.9%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"676.2 KB","wchar":"16.4 KB","syscr":"802","syscw":"103","read_bytes":"0","write_bytes":"85 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/05\/d3df2e2e6def6012c3be58a6b8a90a","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq setoxin-ref.fa         -reg_tree seatoxin-ref_CLUSTALO-args-default.dnd                  -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.301215381875","co2e":"0.6245833833","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"50","hash":"b6\/63d553","native_id":"3945352","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:32.045","start":"2025-10-17 15:38:32.125","complete":"2025-10-17 15:38:42.276","duration":"10.2s","realtime":"8s","%cpu":"171.0%","%mem":"0.3%","rss":"28.2 MB","vmem":"541.4 MB","peak_rss":"28.2 MB","peak_vmem":"544.2 MB","rchar":"759.9 KB","wchar":"35.3 KB","syscr":"943","syscw":"141","read_bytes":"48 KB","write_bytes":"138.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b6\/63d55356a422f916a7d9a432289eb7","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq toxin-ref.fa                           -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"976","inv_ctxt":"2106","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"33.35833299975","co2e":"16.01199983988","co2eMarket":"-","time":"0.0022222222","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"171.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"53","hash":"fd\/9167c6","native_id":"3945446","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN","module":"-","container":"community.wave.seqera.io\/library\/t-coffee_tmalign_pigz:be7dac2ae6aba380","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:32.440","start":"2025-10-17 15:38:32.495","complete":"2025-10-17 15:38:39.378","duration":"6.9s","realtime":"5.2s","%cpu":"67.6%","%mem":"1.2%","rss":"98.6 MB","vmem":"120.3 MB","peak_rss":"98.6 MB","peak_vmem":"120.3 MB","rchar":"3.1 MB","wchar":"2.8 MB","syscr":"1507","syscw":"1513","read_bytes":"1.4 MB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fd\/9167c6773c404197c4350b5b964a4b","script":"\n    export TEMP=\'.\/\'\n    export TMP_4_TCOFFEE=\".\/\"\n    export HOME=\".\/\"\n    t_coffee -seq toxin-ref.fa                           -output fasta_aln         -thread 2         -outfile toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln         \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1364","inv_ctxt":"1844","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"9.595516887","co2e":"4.60584810576","co2eMarket":"-","time":"0.0014516667","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"67.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"30","hash":"c8\/fa1032","native_id":"3945758","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:34.073","start":"2025-10-17 15:38:34.132","complete":"2025-10-17 15:38:35.904","duration":"1.8s","realtime":"0ms","%cpu":"36.8%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"88.2 KB","wchar":"4.1 KB","syscr":"208","syscw":"115","read_bytes":"0","write_bytes":"401 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/c8\/fa1032d2e6434d6e742a57ceec973c","script":"\n    famsa  \\\n         \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"36.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"52","hash":"fa\/3a57d1","native_id":"3945929","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN","module":"-","container":"community.wave.seqera.io\/library\/t-coffee_tmalign_pigz:be7dac2ae6aba380","tag":"seatoxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:35.511","start":"2025-10-17 15:38:35.560","complete":"2025-10-17 15:38:39.540","duration":"4s","realtime":"2.2s","%cpu":"23.3%","%mem":"0.3%","rss":"27.1 MB","vmem":"31.5 MB","peak_rss":"27.1 MB","peak_vmem":"31.5 MB","rchar":"422 KB","wchar":"145.9 KB","syscr":"730","syscw":"684","read_bytes":"160 KB","write_bytes":"136.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fa\/3a57d1c0c7266a81ce7cf2769d3fcb","script":"\n    export TEMP=\'.\/\'\n    export TMP_4_TCOFFEE=\".\/\"\n    export HOME=\".\/\"\n    t_coffee -seq setoxin-ref.fa                           -output fasta_aln         -thread 2         -outfile seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln         \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"481","inv_ctxt":"93","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.8766228163125","co2e":"0.90077895183","co2eMarket":"-","time":"6.233333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"23.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"48","hash":"e2\/340e4a","native_id":"3945978","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"toxin-ref tree: DEFAULT  args: --dpparttree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:35.908","start":"2025-10-17 15:38:36.005","complete":"2025-10-17 15:38:38.311","duration":"2.4s","realtime":"1s","%cpu":"39.0%","%mem":"0.0%","rss":"6.1 MB","vmem":"8.6 MB","peak_rss":"6.1 MB","peak_vmem":"8.6 MB","rchar":"991.1 KB","wchar":"11.2 KB","syscr":"1497","syscw":"259","read_bytes":"164 KB","write_bytes":"13.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/e2\/340e4a87e39b27af4beb10ce3ffae1","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        --dpparttree \\\n        toxin-ref.fa \\\n        > toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"21","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.19062509525","co2e":"0.57150004572","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"51","hash":"5e\/94a732","native_id":"3946274","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref tree: DEFAULT  args: -reg_nseq_3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:38.318","start":"2025-10-17 15:38:38.412","complete":"2025-10-17 15:38:48.200","duration":"9.9s","realtime":"8s","%cpu":"187.9%","%mem":"0.3%","rss":"28.2 MB","vmem":"541.6 MB","peak_rss":"28.2 MB","peak_vmem":"604.7 MB","rchar":"4.8 MB","wchar":"52.7 KB","syscr":"2908","syscw":"352","read_bytes":"0","write_bytes":"334.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5e\/94a7321f77b7de2641403ad259703a","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq toxin-ref.fa                           -reg_nseq 3 -reg  -reg_method famsa_msa -output fasta_aln         -reg_thread 2         -outfile toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1082","inv_ctxt":"1740","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"36.409721858125","co2e":"17.4766664919","co2eMarket":"-","time":"0.0022222222","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"187.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"49","hash":"a5\/6574f9","native_id":"3946456","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:39.389","start":"2025-10-17 15:38:39.480","complete":"2025-10-17 15:38:41.190","duration":"1.8s","realtime":"0ms","%cpu":"75.7%","%mem":"0.1%","rss":"13.3 MB","vmem":"1.1 GB","peak_rss":"14.2 MB","peak_vmem":"1.1 GB","rchar":"89.3 KB","wchar":"5.5 KB","syscr":"208","syscw":"115","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a5\/6574f9be8e1623ad49486203d12d9f","script":"\n    famsa  \\\n         \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"11","inv_ctxt":"31","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"75.7","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"41","hash":"3e\/bcfb71","native_id":"3946498","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-5cd0277547c6b33133225c8ce14c0cf2a4396ea2:0a70b6d89a3e06fbdc4a735461e8b98ff32ee5de-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:39.544","start":"2025-10-17 15:38:39.641","complete":"2025-10-17 15:38:41.324","duration":"1.8s","realtime":"0ms","%cpu":"28.2%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"109.1 KB","wchar":"4.6 KB","syscr":"248","syscw":"33","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3e\/bcfb71e2ba1668565e422982c6dfb5","script":"\n    error_handler() {\n    exit_code=$?\n        if [ $exit_code -eq 132 ]; then\n            echo \"KALIGN failed because is incompatible with some CPU types, see https:\/\/github.com\/TimoLassmann\/kalign\/issues\/46.\"\n        else\n            trap - ERR\n            return $exit_code\n        fi\n    }\n\n    trap \'error_handler\' ERR\n\n    unpigz -cdf toxin-ref.fa | \\\n    kalign \\\n         \\\n        -n 2 \\\n        -o toxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN\":\n        kalign: $(echo $(kalign -v) | sed \'s\/kalign \/\/g\' )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"7","inv_ctxt":"4","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"28.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"47","hash":"27\/a1c836","native_id":"3946657","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:41.197","start":"2025-10-17 15:38:41.290","complete":"2025-10-17 15:38:44.118","duration":"2.9s","realtime":"1s","%cpu":"37.5%","%mem":"0.1%","rss":"7.3 MB","vmem":"9.6 MB","peak_rss":"7.3 MB","peak_vmem":"9.6 MB","rchar":"991 KB","wchar":"10.5 KB","syscr":"1498","syscw":"226","read_bytes":"0","write_bytes":"21.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/27\/a1c8363fd72a4bfeb3154778799ff6","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        toxin-ref.fa \\\n        > toxin-ref_DEFAULT-args-default_MAFFT-args-default.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"25","inv_ctxt":"22","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.156770925875","co2e":"0.55525004442","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"33","hash":"5c\/65869a","native_id":"3946687","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:41.334","start":"2025-10-17 15:38:41.423","complete":"2025-10-17 15:38:43.850","duration":"2.5s","realtime":"1s","%cpu":"37.6%","%mem":"0.1%","rss":"7.4 MB","vmem":"9.6 MB","peak_rss":"7.4 MB","peak_vmem":"9.6 MB","rchar":"979 KB","wchar":"4.3 KB","syscr":"1498","syscw":"164","read_bytes":"16 KB","write_bytes":"20.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5c\/65869a6e7c77799f32c6e57d9337d0","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        setoxin-ref.fa \\\n        > seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"28","inv_ctxt":"29","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.1590278705","co2e":"0.55633337784","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"36","hash":"96\/cd03b6","native_id":"3946899","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-8eb01a3c2755c935d070dd03ff2dee698eeb4466:ceb6e65e00346ed20d0d8078dddf9858a7af0fe2-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:42.280","start":"2025-10-17 15:38:42.376","complete":"2025-10-17 15:38:43.773","duration":"1.5s","realtime":"0ms","%cpu":"40.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"115.5 KB","wchar":"2.2 KB","syscr":"299","syscw":"1353","read_bytes":"96 KB","write_bytes":"396 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/96\/cd03b633776a524f2d36b08d8cd805","script":"\n    muscle \\\n        -super5 setoxin-ref.fa \\\n         \\\n        -threads 2 \\\n        -output seatoxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln\n\n\n    # output may be multiple files if -perm all is set\n    # compress these individually if set to compress output\n    if false; then\n        pigz -p 2 *.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN\":\n        muscle: $(muscle -version | head -n 1 | cut -d \' \' -f 2 | sed \'s\/.linux64\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"43","hash":"6f\/fae71b","native_id":"3947111","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:43.779","start":"2025-10-17 15:38:43.852","complete":"2025-10-17 15:39:05.255","duration":"21.5s","realtime":"8s","%cpu":"100.2%","%mem":"0.5%","rss":"44.6 MB","vmem":"622.9 MB","peak_rss":"44.6 MB","peak_vmem":"686.9 MB","rchar":"18.9 MB","wchar":"643.2 KB","syscr":"18110","syscw":"5611","read_bytes":"32 KB","write_bytes":"940.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6f\/fae71b875764d25e5f50c38c2dc350","script":"\n    magus \\\n        -np 2 \\\n        -i toxin-ref.fa \\\n        -d .\/ \\\n        -o toxin-ref_DEFAULT-args-default_MAGUS-args-default.aln \\\n         \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"475","inv_ctxt":"686","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"20.57499979425","co2e":"9.87599990124","co2eMarket":"-","time":"0.0022222222","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"100.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"37","hash":"77\/1442cd","native_id":"3947127","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"seatoxin-ref tree: DEFAULT  args: --dpparttree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:43.858","start":"2025-10-17 15:38:43.951","complete":"2025-10-17 15:38:46.541","duration":"2.7s","realtime":"0ms","%cpu":"38.8%","%mem":"0.0%","rss":"6.3 MB","vmem":"8.6 MB","peak_rss":"6.3 MB","peak_vmem":"8.6 MB","rchar":"979 KB","wchar":"4.4 KB","syscr":"1497","syscw":"168","read_bytes":"0","write_bytes":"12.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/77\/1442cd131e38dddab926cf84748204","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        --dpparttree \\\n        setoxin-ref.fa \\\n        > seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"17","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"38.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"42","hash":"ad\/36d18c","native_id":"3947190","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-4cefc38542f86c17596c29b35a059de10387c6a7:adbe4fbad680f9beb083956d79128039a727e7b3-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:44.125","start":"2025-10-17 15:38:44.218","complete":"2025-10-17 15:38:45.908","duration":"1.8s","realtime":"0ms","%cpu":"44.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"102.2 KB","wchar":"2.1 KB","syscr":"227","syscw":"20","read_bytes":"764 KB","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ad\/36d18c3927b1daaf2b33159fe61e8f","script":"\n    clustalo         -i toxin-ref.fa                                                      --threads=2                  -o toxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN\":\n        clustalo: $( clustalo --version )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"44","hash":"5e\/d57124","native_id":"3947430","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-8eb01a3c2755c935d070dd03ff2dee698eeb4466:ceb6e65e00346ed20d0d8078dddf9858a7af0fe2-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:45.913","start":"2025-10-17 15:38:46.008","complete":"2025-10-17 15:38:47.864","duration":"2s","realtime":"0ms","%cpu":"64.9%","%mem":"0.1%","rss":"8 MB","vmem":"11.3 MB","peak_rss":"8 MB","peak_vmem":"11.4 MB","rchar":"117.2 KB","wchar":"4.1 KB","syscr":"322","syscw":"1837","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5e\/d57124124b734ad16a8ff190a77b30","script":"\n    muscle \\\n        -super5 toxin-ref.fa \\\n         \\\n        -threads 2 \\\n        -output toxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln\n\n\n    # output may be multiple files if -perm all is set\n    # compress these individually if set to compress output\n    if false; then\n        pigz -p 2 *.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN\":\n        muscle: $(muscle -version | head -n 1 | cut -d \' \' -f 2 | sed \'s\/.linux64\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"9","inv_ctxt":"56","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"64.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"32","hash":"4e\/ed5324","native_id":"3947551","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-4cefc38542f86c17596c29b35a059de10387c6a7:adbe4fbad680f9beb083956d79128039a727e7b3-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:46.547","start":"2025-10-17 15:38:46.642","complete":"2025-10-17 15:38:48.189","duration":"1.6s","realtime":"0ms","%cpu":"26.2%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"99.9 KB","wchar":"731 B","syscr":"227","syscw":"20","read_bytes":"0","write_bytes":"401 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/4e\/ed5324e3886c50b562aaa986fa5dc7","script":"\n    clustalo         -i setoxin-ref.fa                                                      --threads=2                  -o seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN\":\n        clustalo: $( clustalo --version )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"26.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"34","hash":"4a\/a882d6","native_id":"3947725","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:47.871","start":"2025-10-17 15:38:47.965","complete":"2025-10-17 15:39:05.427","duration":"17.6s","realtime":"6s","%cpu":"85.0%","%mem":"0.5%","rss":"44.4 MB","vmem":"272.6 MB","peak_rss":"44.4 MB","peak_vmem":"336.6 MB","rchar":"18.3 MB","wchar":"241.4 KB","syscr":"18068","syscw":"2789","read_bytes":"0","write_bytes":"714.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/4a\/a882d6173a23c114fd660881acef0b","script":"\n    magus \\\n        -np 2 \\\n        -i setoxin-ref.fa \\\n        -d .\/ \\\n        -o seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.aln \\\n         \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"572","inv_ctxt":"333","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"13.372916934125","co2e":"6.41900012838","co2eMarket":"-","time":"0.0016666667","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"85.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"35","hash":"6d\/a52445","native_id":"3947780","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:48.200","start":"2025-10-17 15:38:48.301","complete":"2025-10-17 15:38:51.322","duration":"3.1s","realtime":"1s","%cpu":"98.0%","%mem":"0.4%","rss":"35.1 MB","vmem":"46 MB","peak_rss":"35.1 MB","peak_vmem":"46 MB","rchar":"739.2 KB","wchar":"18 KB","syscr":"943","syscw":"126","read_bytes":"0","write_bytes":"121.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6d\/a52445ee20069dade26e364700fab4","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq setoxin-ref.fa                           -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"72","inv_ctxt":"48","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.522222424","co2e":"1.21066676352","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"98.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"39","hash":"86\/ee78df","native_id":"3947782","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref tree: DEFAULT  args: -reg_nseq_3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:48.212","start":"2025-10-17 15:38:48.302","complete":"2025-10-17 15:38:51.209","duration":"3s","realtime":"1s","%cpu":"107.1%","%mem":"0.2%","rss":"19.6 MB","vmem":"25.1 MB","peak_rss":"19.6 MB","peak_vmem":"25.1 MB","rchar":"1.1 MB","wchar":"29.4 KB","syscr":"1162","syscw":"152","read_bytes":"0","write_bytes":"153.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/86\/ee78df29096e45a68f93a09d40c92f","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq setoxin-ref.fa                           -reg_nseq 3 -reg  -reg_method famsa_msa -output fasta_aln         -reg_thread 2         -outfile seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"81","inv_ctxt":"29","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.727604384875","co2e":"1.30925010474","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"107.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"46","hash":"57\/c0ad2f","native_id":"3948219","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN","module":"-","container":"quay.io\/nf-core\/multiplesequencealign_upp2:4.5.5","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:51.218","start":"2025-10-17 15:38:51.310","complete":"2025-10-17 15:39:05.362","duration":"14.1s","realtime":"5.7s","%cpu":"90.0%","%mem":"1.7%","rss":"132.6 MB","vmem":"743.9 MB","peak_rss":"133.2 MB","peak_vmem":"807.9 MB","rchar":"19.9 MB","wchar":"423.1 KB","syscr":"17729","syscw":"3221","read_bytes":"8.1 MB","write_bytes":"788.9 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/57\/c0ad2f4eec7301fd57e8c3c5f8ec3c","script":"\n\n    if [ \"docker\" = \'singularity\' ]; then\n        export CONDA_PREFIX=\"\/opt\/conda\/\"\n        export PASTA_TOOLS_DEVDIR=\"\/opt\/conda\/bin\/\"\n    fi\n\n    run_upp.py \\\n        -m amino \\\n        -x 2 \\\n        -s toxin-ref.fa \\\n        -d . \\\n        -o toxin-ref_DEFAULT-args-default_UPP-args-default \\\n        -p .\/upp-temporary\n\n    mv toxin-ref_DEFAULT-args-default_UPP-args-default_alignment.fasta toxin-ref_DEFAULT-args-default_UPP-args-default.aln\n\n    if false; then\n        pigz -p 2 toxin-ref_DEFAULT-args-default_UPP-args-default.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN\":\n        upp: $(run_upp.py -v | grep \"run_upp\" | cut -f2 -d\" \")\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1334","inv_ctxt":"601","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"13.300666854","co2e":"6.38432008992","co2eMarket":"-","time":"0.0015777778","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"90.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"40","hash":"14\/c768d2","native_id":"3948280","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN","module":"-","container":"registry.hub.docker.com\/felbecker\/learnmsa:2.0.9","tag":"toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","status":"FAILED","exit":"125","submit":"2025-10-17 15:38:51.328","start":"2025-10-17 15:38:51.422","complete":"2025-10-17 15:41:31.501","duration":"2m 40s","realtime":"2m 40s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/14\/c768d2a548be1c5a557721aec4e4a1","script":"\n    learnMSA \\\n        -i toxin-ref.fa \\\n        -o \"toxin-ref_DEFAULT-args-default_LEARNMSA-args---use_language_model_--sequence_weights.aln\" \\\n        --use_language_model --sequence_weights\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN\":\n        learnmsa: $(learnMSA -h | grep \'version\' | awk -F \'version \' \'{print $2}\' | awk \'{print $1}\' | sed \'s\/)\/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1067.97149540575","co2e":"512.62631779476","co2eMarket":"-","time":"0.0444663889","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","cpu_model":"-"}, {"task_id":"38","hash":"bc\/9b5fae","native_id":"3949584","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN","module":"-","container":"registry.hub.docker.com\/felbecker\/learnmsa:2.0.9","tag":"seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","status":"FAILED","exit":"125","submit":"2025-10-17 15:39:05.261","start":"2025-10-17 15:39:05.356","complete":"2025-10-17 15:41:15.312","duration":"2m 10s","realtime":"2m 10s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/bc\/9b5fae3e26729c55fb1b9354fc9550","script":"\n    learnMSA \\\n        -i setoxin-ref.fa \\\n        -o \"seatoxin-ref_DEFAULT-args-default_LEARNMSA-args---use_language_model_--sequence_weights.aln\" \\\n        --use_language_model --sequence_weights\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN\":\n        learnmsa: $(learnMSA -h | grep \'version\' | awk -F \'version \' \'{print $2}\' | awk \'{print $1}\' | sed \'s\/)\/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"867.00506415575","co2e":"416.16243079476","co2eMarket":"-","time":"0.0360988889","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","cpu_model":"-"}, {"task_id":"45","hash":"0f\/6d0d55","native_id":"3949615","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN","module":"-","container":"quay.io\/nf-core\/multiplesequencealign_upp2:4.5.5","tag":"seatoxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:05.368","start":"2025-10-17 15:39:05.428","complete":"2025-10-17 15:39:13.097","duration":"7.7s","realtime":"6.3s","%cpu":"65.5%","%mem":"1.7%","rss":"133.6 MB","vmem":"746.2 MB","peak_rss":"135 MB","peak_vmem":"810.4 MB","rchar":"17.1 MB","wchar":"185.7 KB","syscr":"12598","syscw":"1698","read_bytes":"1.2 MB","write_bytes":"484 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/0f\/6d0d55f5c2f5b3154b95cf1fcef25f","script":"\n\n    if [ \"docker\" = \'singularity\' ]; then\n        export CONDA_PREFIX=\"\/opt\/conda\/\"\n        export PASTA_TOOLS_DEVDIR=\"\/opt\/conda\/bin\/\"\n    fi\n\n    run_upp.py \\\n        -m amino \\\n        -x 2 \\\n        -s setoxin-ref.fa \\\n        -d . \\\n        -o seatoxin-ref_DEFAULT-args-default_UPP-args-default \\\n        -p .\/upp-temporary\n\n    mv seatoxin-ref_DEFAULT-args-default_UPP-args-default_alignment.fasta seatoxin-ref_DEFAULT-args-default_UPP-args-default.aln\n\n    if false; then\n        pigz -p 2 seatoxin-ref_DEFAULT-args-default_UPP-args-default.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN\":\n        upp: $(run_upp.py -v | grep \"run_upp\" | cut -f2 -d\" \")\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"891","inv_ctxt":"543","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"11.2259768686875","co2e":"5.38846889697","co2eMarket":"-","time":"0.0017433333","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"65.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"54","hash":"ad\/561d6d","native_id":"3949638","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:05.434","start":"2025-10-17 15:39:05.527","complete":"2025-10-17 15:39:08.662","duration":"3.2s","realtime":"177ms","%cpu":"34.1%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"125.2 KB","wchar":"4.2 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ad\/561d6df39984543a9cccf199449239","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$total_gaps,$avg_gaps\" >> toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"8","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.1911662754375","co2e":"0.09175981221","co2eMarket":"-","time":"4.91667E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"34.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"55","hash":"b8\/f98978","native_id":"3950005","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:08.675","start":"2025-10-17 15:39:08.763","complete":"2025-10-17 15:39:11.782","duration":"3.1s","realtime":"1s","%cpu":"39.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"86.8 KB","wchar":"1.2 KB","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"903 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b8\/f98978b8ccf766537323ffa5e2a572","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"2","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.197395929125","co2e":"0.57475004598","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"56","hash":"99\/0324ab","native_id":"3950334","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:11.832","start":"2025-10-17 15:39:11.882","complete":"2025-10-17 15:39:16.630","duration":"4.8s","realtime":"4s","%cpu":"81.0%","%mem":"0.9%","rss":"75.3 MB","vmem":"91.3 MB","peak_rss":"75.3 MB","peak_vmem":"91.3 MB","rchar":"3 MB","wchar":"2.7 MB","syscr":"1399","syscw":"1382","read_bytes":"32 KB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/99\/0324ab042a9ef2138d5e98ade6f255","script":"\n    export TEMP=\'.\/\'\n    filename=toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    if [[ $(basename toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln) == *.gz ]] ; then\n        unpigz -f toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n        filename=toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"203","inv_ctxt":"734","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"8.554166581125","co2e":"4.10599995894","co2eMarket":"-","time":"0.0011111111","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"81.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"58","hash":"a7\/e5e123","native_id":"3950505","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:13.104","start":"2025-10-17 15:39:13.199","complete":"2025-10-17 15:39:15.639","duration":"2.5s","realtime":"0ms","%cpu":"57.9%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"292.4 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a7\/e5e1231ed2af4a57783db30e639b27","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"57.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"57","hash":"51\/0da7d0","native_id":"3950939","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:15.643","start":"2025-10-17 15:39:15.739","complete":"2025-10-17 15:39:18.167","duration":"2.5s","realtime":"1s","%cpu":"46.5%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"292.4 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/51\/0da7d0c7d3e969fa6ce6d9aace1386","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.359895942125","co2e":"0.65275005222","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"46.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"60","hash":"23\/8d7873","native_id":"3951134","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:16.641","start":"2025-10-17 15:39:16.729","complete":"2025-10-17 15:39:19.618","duration":"3s","realtime":"167ms","%cpu":"34.0%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"390.2 KB","wchar":"2.3 KB","syscr":"501","syscw":"47","read_bytes":"80 KB","write_bytes":"276 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/23\/8d78739cb774d83c33164bd2a84878","script":"\n    # Extract plddt per protein\n    echo \"id,seq_id,plddt\" > seatoxin-ref_full_plddt.csv\n    for structure in $(ls *.pdb); do\n        protein_name=$(basename \"$structure\" .pdb)\n        avg=$(awk \'{if($1==\"ATOM\" && $3==\"CA\") print $11}\' \"$structure\" | awk \'{sum+=$1} END {print sum\/NR}\')\n        echo \"seatoxin-ref,$protein_name,$avg\" >> seatoxin-ref_full_plddt.csv\n    done\n\n    # Extract plddt summary\n    echo \"id,plddt\" > seatoxin-ref_plddt_summary.csv\n    plddt=$(awk -F, \'NR>1 {sum+=$2} END {print sum\/NR}\' seatoxin-ref_full_plddt.csv); echo \"seatoxin-ref,$plddt\" >> seatoxin-ref_plddt_summary.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"13","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.179988932","co2e":"0.08639468736","co2eMarket":"-","time":"4.63889E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"34.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"59","hash":"c7\/8b49aa","native_id":"3951218","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB","module":"-","container":"community.wave.seqera.io\/library\/foldmason:2.7bd21ed--e7f739473ad6578d","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:18.174","start":"2025-10-17 15:39:18.267","complete":"2025-10-17 15:39:22.021","duration":"3.8s","realtime":"500ms","%cpu":"30.1%","%mem":"0.1%","rss":"11.2 MB","vmem":"38.9 MB","peak_rss":"11.2 MB","peak_vmem":"38.9 MB","rchar":"355.2 KB","wchar":"6.3 KB","syscr":"330","syscw":"126","read_bytes":"192 KB","write_bytes":"4.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/c7\/8b49aa316c9b67574ed672ba44a390","script":"\n    foldmason createdb \\\n        1sh1.pdb 1ahl.pdb 1apf.pdb 1atx.pdb 1bds.pdb \\\n        seatoxin-ref \\\n         \\\n        --threads 2\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB\":\n        foldmason: $(foldmason | grep \"foldmason Version:\" | cut -d\":\" -f 2 | awk \'{$1=$1;print}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"54","inv_ctxt":"13","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.4948785118125","co2e":"0.23754168567","co2eMarket":"-","time":"1.388889E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"30.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"61","hash":"34\/be4e8a","native_id":"3951544","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:19.624","start":"2025-10-17 15:39:19.719","complete":"2025-10-17 15:39:24.028","duration":"4.4s","realtime":"58ms","%cpu":"49.2%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"114.4 KB","wchar":"884 B","syscr":"307","syscw":"38","read_bytes":"64 KB","write_bytes":"180 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/34\/be4e8a3c457f4763c239095ed717e6","script":"\n    # Prepare templates\n    for structure in $(ls *.pdb); do\n        id=`echo $structure| awk  {\'gsub(\".pdb\", \"\", $0); print\'}`\n        echo -e \">\"$id \"_P_\" \"${id}\" >>seatoxin-ref_template.txt\n    done\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"19","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0824082765","co2e":"0.03955597272","co2eMarket":"-","time":"1.61111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"49.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"62","hash":"42\/0d4086","native_id":"3951796","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS","module":"-","container":"quay.io\/biocontainers\/csvtk:0.31.0--h9ee0642_0","tag":"summary_simstats","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:22.026","start":"2025-10-17 15:39:22.121","complete":"2025-10-17 15:39:25.553","duration":"3.5s","realtime":"0ms","%cpu":"43.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"73.8 KB","wchar":"468 B","syscr":"186","syscw":"19","read_bytes":"16 KB","write_bytes":"141 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/42\/0d4086b9997f7d6f326850e65c1463","script":"\n    csvtk \\\n        concat \\\n         \\\n        --num-cpus 2 \\\n        --delimiter \",\" \\\n        --out-delimiter \",\" \\\n        --out-file summary_simstats.csv \\\n        inputs\/csv1\/toxin-ref.sim_tot inputs\/csv2\/seatoxin-ref.sim_tot\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS\":\n        csvtk: $(echo $( csvtk version | sed -e \"s\/csvtk v\/\/g\" ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"63","hash":"d4\/5e3777","native_id":"3951946","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:24.043","start":"2025-10-17 15:39:24.128","complete":"2025-10-17 15:39:27.467","duration":"3.4s","realtime":"95ms","%cpu":"39.2%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"119.3 KB","wchar":"1.4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"545 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/d4\/5e377747dc210add63af499e5aa79f","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.11353824225","co2e":"0.05449835628","co2eMarket":"-","time":"2.63889E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"65","hash":"49\/b9014d","native_id":"3952290","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:25.559","start":"2025-10-17 15:39:25.653","complete":"2025-10-17 15:39:29.594","duration":"4s","realtime":"0ms","%cpu":"37.6%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"648 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"345 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/49\/b9014d52cef49bdf3de75674b793dd","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"64","hash":"e6\/4eb766","native_id":"3952434","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:27.473","start":"2025-10-17 15:39:27.568","complete":"2025-10-17 15:39:30.044","duration":"2.6s","realtime":"1s","%cpu":"48.4%","%mem":"0.0%","rss":"2.9 MB","vmem":"4.3 MB","peak_rss":"2.9 MB","peak_vmem":"4.3 MB","rchar":"391.6 KB","wchar":"136.5 KB","syscr":"701","syscw":"656","read_bytes":"32 KB","write_bytes":"226.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/e6\/4eb766a97e3d961c6322c84bfa334b","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    if [[ $(basename seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n        filename=seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.40277789","co2e":"0.6733333872","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"48.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"67","hash":"3c\/8ee85f","native_id":"3952747","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:29.606","start":"2025-10-17 15:39:29.694","complete":"2025-10-17 15:39:32.226","duration":"2.6s","realtime":"0ms","%cpu":"44.3%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"256.6 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"16 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3c\/8ee85ff5469526b73dee5eab2771c3","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"3","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"66","hash":"f7\/c88f6a","native_id":"3952809","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:30.059","start":"2025-10-17 15:39:30.145","complete":"2025-10-17 15:39:32.316","duration":"2.3s","realtime":"0ms","%cpu":"42.9%","%mem":"0.1%","rss":"7 MB","vmem":"12.5 MB","peak_rss":"7 MB","peak_vmem":"12.5 MB","rchar":"256.6 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"16 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/f7\/c88f6a12463d26b1857c693fcfe3c4","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"31","inv_ctxt":"15","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"42.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"68","hash":"6e\/16d0e0","native_id":"3953023","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:32.235","start":"2025-10-17 15:39:32.317","complete":"2025-10-17 15:39:34.876","duration":"2.6s","realtime":"0ms","%cpu":"33.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"657 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"354 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6e\/16d0e0889dab97a5c67aabfccf645b","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"33.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"71","hash":"89\/8660b0","native_id":"3953058","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:32.333","start":"2025-10-17 15:39:32.416","complete":"2025-10-17 15:39:34.894","duration":"2.6s","realtime":"109ms","%cpu":"40.3%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"119.6 KB","wchar":"1.4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"565 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/89\/8660b0258e87ae57bbaf952039dabb","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"14","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.132976312875","co2e":"0.06382863018","co2eMarket":"-","time":"3.02778E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"69","hash":"48\/10cdaa","native_id":"3953530","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:34.902","start":"2025-10-17 15:39:34.994","complete":"2025-10-17 15:39:37.638","duration":"2.7s","realtime":"0ms","%cpu":"49.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"391.1 KB","wchar":"136.1 KB","syscr":"701","syscw":"654","read_bytes":"0","write_bytes":"226.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/48\/10cdaa6da12bb595215052e9b0623b","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    if [[ $(basename seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n        filename=seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"49.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"70","hash":"ee\/a81f26","native_id":"3953539","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:34.909","start":"2025-10-17 15:39:34.995","complete":"2025-10-17 15:39:37.617","duration":"2.7s","realtime":"0ms","%cpu":"37.1%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"256.7 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ee\/a81f26a64b252bcdc4a31fc6d051e5","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"72","hash":"6f\/78bcec","native_id":"3953788","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:37.630","start":"2025-10-17 15:39:37.739","complete":"2025-10-17 15:39:40.801","duration":"3.2s","realtime":"0ms","%cpu":"44.4%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"256.8 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6f\/78bcecaa97d83b0a353d7c087118f8","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"17","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"73","hash":"a5\/9af165","native_id":"3953789","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:37.665","start":"2025-10-17 15:39:37.744","complete":"2025-10-17 15:39:40.759","duration":"3.1s","realtime":"0ms","%cpu":"33.8%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"637 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"343 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a5\/9af165ec3d8b9a165fad0bdc3878a6","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"33.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"74","hash":"85\/71ca89","native_id":"3954385","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:40.774","start":"2025-10-17 15:39:40.802","complete":"2025-10-17 15:39:44.903","duration":"4.1s","realtime":"0ms","%cpu":"51.3%","%mem":"0.1%","rss":"6.9 MB","vmem":"12.5 MB","peak_rss":"6.9 MB","peak_vmem":"12.5 MB","rchar":"390.8 KB","wchar":"135.8 KB","syscr":"701","syscw":"654","read_bytes":"32 KB","write_bytes":"226.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/85\/71ca8973e3f7a523fcb6ab9e1c2dda","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n    if [[ $(basename seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n        filename=seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"19","inv_ctxt":"17","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"51.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"75","hash":"65\/0479c2","native_id":"3954395","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:40.815","start":"2025-10-17 15:39:40.901","complete":"2025-10-17 15:39:44.977","duration":"4.2s","realtime":"98ms","%cpu":"34.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"119.3 KB","wchar":"1.3 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"533 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/65\/0479c27e9006d85716565c5404a197","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"14","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.106728037875","co2e":"0.05122945818","co2eMarket":"-","time":"2.72222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"34.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"76","hash":"7b\/f1b211","native_id":"3955000","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:44.908","start":"2025-10-17 15:39:44.977","complete":"2025-10-17 15:39:47.120","duration":"2.2s","realtime":"0ms","%cpu":"41.7%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"256.5 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7b\/f1b211f548821a4007e69672188c1e","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"41.7","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"77","hash":"7a\/3fd442","native_id":"3955035","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:44.986","start":"2025-10-17 15:39:45.077","complete":"2025-10-17 15:39:47.080","duration":"2.1s","realtime":"0ms","%cpu":"42.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"256.5 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7a\/3fd4422516841159828c88ed6c1ddf","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"42.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"78","hash":"57\/f1ac83","native_id":"3955278","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:47.089","start":"2025-10-17 15:39:47.121","complete":"2025-10-17 15:39:52.535","duration":"5.4s","realtime":"3s","%cpu":"83.1%","%mem":"0.9%","rss":"75.6 MB","vmem":"91.3 MB","peak_rss":"75.6 MB","peak_vmem":"91.3 MB","rchar":"3 MB","wchar":"2.7 MB","syscr":"1399","syscw":"1382","read_bytes":"32 KB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/57\/f1ac83991bb454269bf13dfd7b1161","script":"\n    export TEMP=\'.\/\'\n    filename=toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    if [[ $(basename toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln) == *.gz ]] ; then\n        unpigz -f toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n        filename=toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"232","inv_ctxt":"253","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"6.5578122376875","co2e":"3.14774987409","co2eMarket":"-","time":"8.333333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"83.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"79","hash":"93\/9525e6","native_id":"3955344","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:47.136","start":"2025-10-17 15:39:47.220","complete":"2025-10-17 15:39:49.448","duration":"2.3s","realtime":"0ms","%cpu":"43.6%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"86.8 KB","wchar":"1.2 KB","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"890 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/93\/9525e6bdcc9b8f6e82071262eec268","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"80","hash":"ae\/612f8e","native_id":"3955620","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:49.455","start":"2025-10-17 15:39:49.549","complete":"2025-10-17 15:39:51.970","duration":"2.5s","realtime":"76ms","%cpu":"43.0%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"125.2 KB","wchar":"4.2 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ae\/612f8e8d5e664c4d4c6c995dff7adc","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$total_gaps,$avg_gaps\" >> toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"10","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.097348559875","co2e":"0.04672730874","co2eMarket":"-","time":"2.11111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"81","hash":"54\/73dbfe","native_id":"3956014","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:51.980","start":"2025-10-17 15:39:52.071","complete":"2025-10-17 15:39:54.761","duration":"2.8s","realtime":"0ms","%cpu":"57.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"292.3 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/54\/73dbfe19891a4a781754b707a83d78","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"57.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"82","hash":"d7\/b5238a","native_id":"3956076","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:52.541","start":"2025-10-17 15:39:52.635","complete":"2025-10-17 15:39:54.789","duration":"2.2s","realtime":"0ms","%cpu":"52.2%","%mem":"0.1%","rss":"12.3 MB","vmem":"24.8 MB","peak_rss":"12.3 MB","peak_vmem":"24.8 MB","rchar":"292.3 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/d7\/b5238acb8a97630f43bf3c88c3a610","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"33","inv_ctxt":"14","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"52.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"84","hash":"84\/6592a7","native_id":"3956306","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:54.777","start":"2025-10-17 15:39:54.789","complete":"2025-10-17 15:39:57.742","duration":"3s","realtime":"0ms","%cpu":"40.0%","%mem":"0.1%","rss":"7.3 MB","vmem":"12.5 MB","peak_rss":"7.3 MB","peak_vmem":"12.5 MB","rchar":"391.1 KB","wchar":"136 KB","syscr":"701","syscw":"654","read_bytes":"32 KB","write_bytes":"226.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/84\/6592a7ccd04d1553531f1f4d2ff948","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    if [[ $(basename seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n        filename=seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"31","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"165","hash":"3f\/faa3cb","native_id":"3956340","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:54.827","start":"2025-10-17 15:39:54.890","complete":"2025-10-17 15:39:57.686","duration":"2.9s","realtime":"0ms","%cpu":"30.1%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"645 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"351 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3f\/faa3cb59e21347cff5fc5f69b2d8e5","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln > seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"30.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"83","hash":"fb\/0d20be","native_id":"3956816","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:57.692","start":"2025-10-17 15:39:57.743","complete":"2025-10-17 15:40:00.246","duration":"2.6s","realtime":"80ms","%cpu":"37.0%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"119.7 KB","wchar":"1.4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"598 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fb\/0d20be3c23cae9b5ba16e7e13fce61","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"16","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.09163879725","co2e":"0.04398662268","co2eMarket":"-","time":"2.22222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"86","hash":"51\/b3ff56","native_id":"3956844","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:57.756","start":"2025-10-17 15:39:57.842","complete":"2025-10-17 15:40:00.162","duration":"2.4s","realtime":"0ms","%cpu":"40.5%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"642 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"348 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/51\/b3ff569a8c8ddcaefc046d7bdf5027","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"11","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"85","hash":"88\/2e27d3","native_id":"3957012","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:00.172","start":"2025-10-17 15:40:00.246","complete":"2025-10-17 15:40:03.978","duration":"3.8s","realtime":"1s","%cpu":"38.5%","%mem":"0.1%","rss":"8.6 MB","vmem":"16.6 MB","peak_rss":"8.6 MB","peak_vmem":"16.6 MB","rchar":"256.8 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/88\/2e27d3e141a924f73d5f7e3708e46a","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"37","inv_ctxt":"17","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.179340372125","co2e":"0.56608337862","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"38.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"87","hash":"0b\/391a50","native_id":"3957043","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:00.259","start":"2025-10-17 15:40:00.347","complete":"2025-10-17 15:40:02.961","duration":"2.7s","realtime":"1s","%cpu":"36.2%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"256.8 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/0b\/391a50ec7b3226037d26a9b6ca8bbe","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.12743064575","co2e":"0.54116670996","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"36.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"88","hash":"05\/4ed726","native_id":"3957661","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:02.967","start":"2025-10-17 15:40:03.061","complete":"2025-10-17 15:40:06.318","duration":"3.4s","realtime":"105ms","%cpu":"42.9%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"124.6 KB","wchar":"4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"1.9 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/05\/4ed726d0f2684d281f6ee72d00939d","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$total_gaps,$avg_gaps\" >> toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"12","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.1342579659375","co2e":"0.06444382365","co2eMarket":"-","time":"2.91667E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"42.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"89","hash":"3b\/3df659","native_id":"3957774","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:03.985","start":"2025-10-17 15:40:04.078","complete":"2025-10-17 15:40:09.217","duration":"5.2s","realtime":"3s","%cpu":"80.5%","%mem":"0.9%","rss":"75.3 MB","vmem":"91 MB","peak_rss":"75.3 MB","peak_vmem":"91 MB","rchar":"3 MB","wchar":"2.7 MB","syscr":"1399","syscw":"1382","read_bytes":"32 KB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3b\/3df6591d52ba8028973c77a97ea7c1","script":"\n    export TEMP=\'.\/\'\n    filename=toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    if [[ $(basename toxin-ref_FAMSA-args-default_MAGUS-args-default.aln) == *.gz ]] ; then\n        unpigz -f toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n        filename=toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"229","inv_ctxt":"272","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"6.3817705780625","co2e":"3.06324987747","co2eMarket":"-","time":"8.333333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"80.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"91","hash":"83\/efd2c9","native_id":"3958225","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:06.333","start":"2025-10-17 15:40:06.418","complete":"2025-10-17 15:40:08.115","duration":"1.8s","realtime":"0ms","%cpu":"50.0%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"86.7 KB","wchar":"1.2 KB","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"884 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/83\/efd2c91c913203035d6665e7129cb0","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: toxin-ref_FAMSA-args-default_MAGUS-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"50.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"90","hash":"fd\/546ad4","native_id":"3958405","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:08.139","start":"2025-10-17 15:40:08.218","complete":"2025-10-17 15:40:10.585","duration":"2.4s","realtime":"0ms","%cpu":"43.9%","%mem":"0.0%","rss":"2.8 MB","vmem":"4.3 MB","peak_rss":"2.8 MB","peak_vmem":"4.3 MB","rchar":"293.3 KB","wchar":"10.2 KB","syscr":"600","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fd\/546ad4df7d67753420a669c9d4f52e","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"9","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"92","hash":"3d\/814b06","native_id":"3958525","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:09.227","start":"2025-10-17 15:40:09.318","complete":"2025-10-17 15:40:12.534","duration":"3.3s","realtime":"1s","%cpu":"53.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"293.3 KB","wchar":"10.2 KB","syscr":"600","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3d\/814b0663ee3ecdbb1d6c0f3c6c9180","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"toxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"toxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.517882065875","co2e":"0.72858339162","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"93","hash":"a5\/a77e58","native_id":"3958862","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:10.590","start":"2025-10-17 15:40:10.685","complete":"2025-10-17 15:40:14.553","duration":"4s","realtime":"1s","%cpu":"39.8%","%mem":"0.0%","rss":"1.9 MB","vmem":"4 MB","peak_rss":"1.9 MB","peak_vmem":"4 MB","rchar":"390.7 KB","wchar":"135.8 KB","syscr":"701","syscw":"654","read_bytes":"32 KB","write_bytes":"230.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a5\/a77e58ad00d0bfd03e5f6abf03e965","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n    if [[ $(basename seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n        filename=seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.20868065225","co2e":"0.58016671308","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"96","hash":"7b\/9bbb8d","native_id":"3959045","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:12.550","start":"2025-10-17 15:40:12.635","complete":"2025-10-17 15:40:14.577","duration":"2s","realtime":"0ms","%cpu":"47.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"636 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"342 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7b\/9bbb8d2d6f2a8a259ca1160c618c75","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"3","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"47.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"94","hash":"18\/ea7999","native_id":"3959200","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:14.560","start":"2025-10-17 15:40:14.677","complete":"2025-10-17 15:40:17.852","duration":"3.3s","realtime":"98ms","%cpu":"41.4%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"119.3 KB","wchar":"1.3 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"532 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/18\/ea7999d4640bb1a6276a5d76941e38","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"16","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.12198948375","co2e":"0.0585549522","co2eMarket":"-","time":"2.72222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"41.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"95","hash":"bf\/8cd43f","native_id":"3959201","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"FAILED","exit":"1","submit":"2025-10-17 15:40:14.585","start":"2025-10-17 15:40:14.678","complete":"2025-10-17 15:40:17.829","duration":"3.2s","realtime":"3.2s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/bf\/8cd43fe6d5b4df8d8791a4e6e8ffb9","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"21.0219845615","co2e":"10.09055258952","co2eMarket":"-","time":"8.752778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"-"}, {"task_id":"97","hash":"5d\/0a9534","native_id":"3959685","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"FAILED","exit":"1","submit":"2025-10-17 15:40:17.842","start":"2025-10-17 15:40:17.952","complete":"2025-10-17 15:40:21.260","duration":"3.4s","realtime":"3.3s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5d\/0a953444a0e1d6c2e8a6b01a7e3eea","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"22.06941415575","co2e":"10.59331879476","co2eMarket":"-","time":"9.188889E-4","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"-"}, {"task_id":"98","hash":"1b\/638c93","native_id":"3959686","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:17.860","start":"2025-10-17 15:40:17.953","complete":"2025-10-17 15:40:21.289","duration":"3.4s","realtime":"71ms","%cpu":"57.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"125 KB","wchar":"4.1 KB","syscr":"296","syscw":"29","read_bytes":"0","write_bytes":"2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/1b\/638c93206d6478344e1f24df45ea7c","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas > toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,DEFAULT,,default,MAFFT,--dpparttree,--dpparttree,$total_gaps,$avg_gaps\" >> toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.113538240125","co2e":"0.05449835526","co2eMarket":"-","time":"1.97222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"57.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}],"summary":{"FAMSA_GUIDETREE":{"co2e":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"energy":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"co2e_non_cached":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"energy_non_cached":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"co2e_market":{},"energy_market":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0}},"UNTAR":{"co2e":{"all":[0.11967214398],"total":0.11967214398,"mean":0.11967214398,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.11967214398,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.11967214398,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.11967214398,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.11967214398,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.11967214398},"energy":{"all":[0.249316966625],"total":0.249316966625,"mean":0.249316966625,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.249316966625,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.249316966625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.249316966625,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.249316966625,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.249316966625},"co2e_non_cached":{"all":[0.11967214398],"total":0.11967214398,"mean":0.11967214398,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.11967214398,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.11967214398,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.11967214398,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.11967214398,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.11967214398},"energy_non_cached":{"all":[0.249316966625],"total":0.249316966625,"mean":0.249316966625,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.249316966625,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.249316966625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.249316966625,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.249316966625,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.249316966625},"co2e_market":{},"energy_market":{"all":[0.249316966625],"total":0.249316966625,"mean":0.249316966625,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.249316966625,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR 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--use_language_model_--sequence_weights)","max":512.62631779476},"energy_non_cached":{"all":[867.00506415575,1067.97149540575],"total":1934.9765595615,"mean":967.48827978075,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","min":867.00506415575,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q1":917.24667196825,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q2":967.48827978075,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q3":1017.7298875932499,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","max":1067.97149540575},"co2e_market":{},"energy_market":{"all":[867.00506415575,1067.97149540575],"total":1934.9765595615,"mean":967.48827978075,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","min":867.00506415575,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q1":917.24667196825,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q2":967.48827978075,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q3":1017.7298875932499,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","max":1067.97149540575}}}};
+  window.options = [{"option":"ci","value":"480.0"},{"option":"ciMarket","value":null},{"option":"customCpuTdpFile","value":null},{"option":"ignoreCpuModel","value":"false"},{"option":"location","value":null},{"option":"machineType","value":null},{"option":"powerdrawCpuDefault","value":null},{"option":"powerdrawMem","value":"0.3725"},{"option":"pue","value":"1.0"},{"option":"reportFile","value":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html"},{"option":"summaryFile","value":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt"},{"option":"traceFile","value":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt"}];
+
+  </script>
+
+</body>
+</html>
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
new file mode 100644
index 00000000..8fda4c5c
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
@@ -0,0 +1,29 @@
+Total CO2e footprint measures of this workflow run (including cached tasks):
+  CO2e emissions: 1.06 g
+  Energy consumption: 2.21 Wh
+  CO2e emissions (market): -
+
+Which equals:
+  - 0.006 km travelled by car
+  - It takes one tree 50min 46.78s to sequester the equivalent amount of CO2 from the atmosphere
+  - 0.002 % of a flight from Paris to London
+
+The calculation of these values is based on the carbon footprint computation method developed in the Green Algorithms project:
+  Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
+  Adv. Sci. 2021, 2100707. https://doi.org/10.1002/advs.202100707
+
+nf-co2footprint plugin version: 1.0.0
+
+nf-co2footprint options:
+  ci: 480.0
+  ciMarket: null
+  ignoreCpuModel: false
+  location: null
+  machineType: null
+  powerdrawCpuDefault: null
+  powerdrawMem: 0.3725
+  pue: 1.0
+  customCpuTdpFile: null
+  reportFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html
+  summaryFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
+  traceFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
new file mode 100644
index 00000000..7874bd8d
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
@@ -0,0 +1,100 @@
+task_id	status	name	energy_consumption	CO2e	CO2e_market	carbon_intensity	%cpu	memory	realtime	cpus	powerdraw_cpu	cpu_model
+13	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	41.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+6	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	35.4%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+1	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)	249.32 uWh	119.67 ug	null	480.0 gCO₂e/kWh	38.6%	3.0 GB	211ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+8	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)	1.5 mWh	718.83 ug	null	480.0 gCO₂e/kWh	52.6%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+11	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)	1.41 mWh	674.42 ug	null	480.0 gCO₂e/kWh	48.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+2	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	5.66 mWh	2.72 mg	null	480.0 gCO₂e/kWh	69.8%	3.0 GB	3s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+3	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	1.67 mWh	802.25 ug	null	480.0 gCO₂e/kWh	60.3%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+10	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	1.08 mWh	516.25 ug	null	480.0 gCO₂e/kWh	33.9%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+14	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	53.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+4	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	1.1 mWh	530.33 ug	null	480.0 gCO₂e/kWh	35.2%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+9	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	5.09 mWh	2.44 mg	null	480.0 gCO₂e/kWh	99.0%	3.0 GB	2s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+12	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	48.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+5	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	45.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+7	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	59.0%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+15	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	1.93 mWh	926.83 ug	null	480.0 gCO₂e/kWh	71.8%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+17	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	126.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+20	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	1.21 mWh	581.25 ug	null	480.0 gCO₂e/kWh	39.9%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+22	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	1.42 mWh	679.83 ug	null	480.0 gCO₂e/kWh	49.0%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+18	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.4%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+21	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	50.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+23	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)	112.23 uWh	53.87 ug	null	480.0 gCO₂e/kWh	50.0%	3.0 GB	78ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+19	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	53.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+25	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)	141.76 uWh	68.04 ug	null	480.0 gCO₂e/kWh	28.4%	3.0 GB	149ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+26	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	47.6%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+16	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)	15.36 mWh	7.38 mg	null	480.0 gCO₂e/kWh	83.5%	3.0 GB	7s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+28	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	53.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+31	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	47.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+27	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	46.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+29	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)	1.3 mWh	624.58 ug	null	480.0 gCO₂e/kWh	43.9%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+24	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)	14.31 mWh	6.87 mg	null	480.0 gCO₂e/kWh	91.9%	3.0 GB	6s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+30	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	36.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+48	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)	1.19 mWh	571.5 ug	null	480.0 gCO₂e/kWh	39.0%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+53	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	9.6 mWh	4.61 mg	null	480.0 gCO₂e/kWh	67.6%	3.0 GB	5s 226ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+52	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	1.88 mWh	900.78 ug	null	480.0 gCO₂e/kWh	23.3%	3.0 GB	2s 244ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+49	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	75.7%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+41	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	28.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+50	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)	33.36 mWh	16.01 mg	null	480.0 gCO₂e/kWh	171.0%	3.0 GB	8s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+36	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	40.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+33	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)	1.16 mWh	556.33 ug	null	480.0 gCO₂e/kWh	37.6%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+47	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)	1.16 mWh	555.25 ug	null	480.0 gCO₂e/kWh	37.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+42	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+37	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	38.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+44	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	64.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+32	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	26.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+51	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)	36.41 mWh	17.48 mg	null	480.0 gCO₂e/kWh	187.9%	3.0 GB	8s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+39	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)	2.73 mWh	1.31 mg	null	480.0 gCO₂e/kWh	107.1%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+35	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	2.52 mWh	1.21 mg	null	480.0 gCO₂e/kWh	98.0%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+43	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)	20.57 mWh	9.88 mg	null	480.0 gCO₂e/kWh	100.2%	3.0 GB	8s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+46	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)	13.3 mWh	6.38 mg	null	480.0 gCO₂e/kWh	90.0%	3.0 GB	5s 680ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+34	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)	13.37 mWh	6.42 mg	null	480.0 gCO₂e/kWh	85.0%	3.0 GB	6s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+54	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	191.17 uWh	91.76 ug	null	480.0 gCO₂e/kWh	34.1%	3.0 GB	177ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+55	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	1.2 mWh	574.75 ug	null	480.0 gCO₂e/kWh	39.3%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+45	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	11.23 mWh	5.39 mg	null	480.0 gCO₂e/kWh	65.5%	3.0 GB	6s 276ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+58	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	57.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+56	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	8.55 mWh	4.11 mg	null	480.0 gCO₂e/kWh	81.0%	3.0 GB	4s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+57	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	1.36 mWh	652.75 ug	null	480.0 gCO₂e/kWh	46.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+60	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)	179.99 uWh	86.39 ug	null	480.0 gCO₂e/kWh	34.0%	3.0 GB	167ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+59	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)	494.88 uWh	237.54 ug	null	480.0 gCO₂e/kWh	30.1%	3.0 GB	500ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+61	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)	82.41 uWh	39.56 ug	null	480.0 gCO₂e/kWh	49.2%	3.0 GB	58ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+62	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	43.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+63	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	113.54 uWh	54.5 ug	null	480.0 gCO₂e/kWh	39.2%	3.0 GB	95ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+65	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	37.6%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+64	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	1.4 mWh	673.33 ug	null	480.0 gCO₂e/kWh	48.4%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+67	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+66	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	42.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+68	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	33.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+71	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	132.98 uWh	63.83 ug	null	480.0 gCO₂e/kWh	40.3%	3.0 GB	109ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+69	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	49.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+70	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	37.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+73	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	33.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+72	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.4%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+74	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	51.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+75	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	106.73 uWh	51.23 ug	null	480.0 gCO₂e/kWh	34.5%	3.0 GB	98ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+77	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	42.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+76	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	41.7%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+79	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	43.6%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+80	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	97.35 uWh	46.73 ug	null	480.0 gCO₂e/kWh	43.0%	3.0 GB	76ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+78	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	6.56 mWh	3.15 mg	null	480.0 gCO₂e/kWh	83.1%	3.0 GB	3s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+81	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	57.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+82	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	52.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+165	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	30.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+84	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	40.0%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+86	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	40.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+83	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	91.64 uWh	43.99 ug	null	480.0 gCO₂e/kWh	37.0%	3.0 GB	80ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+87	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	1.13 mWh	541.17 ug	null	480.0 gCO₂e/kWh	36.2%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+85	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	1.18 mWh	566.08 ug	null	480.0 gCO₂e/kWh	38.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+88	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	134.26 uWh	64.44 ug	null	480.0 gCO₂e/kWh	42.9%	3.0 GB	105ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+91	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	50.0%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+89	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	6.38 mWh	3.06 mg	null	480.0 gCO₂e/kWh	80.5%	3.0 GB	3s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+90	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	43.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+92	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	1.52 mWh	728.58 ug	null	480.0 gCO₂e/kWh	53.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+93	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	1.21 mWh	580.17 ug	null	480.0 gCO₂e/kWh	39.8%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+96	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	47.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+94	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	121.99 uWh	58.55 ug	null	480.0 gCO₂e/kWh	41.4%	3.0 GB	98ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+95	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	21.02 mWh	10.09 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	3s 151ms	2	11.5 W	null
+97	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	22.07 mWh	10.59 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	3s 308ms	2	11.5 W	null
+98	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	113.54 uWh	54.5 ug	null	480.0 gCO₂e/kWh	57.1%	3.0 GB	71ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+38	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	867.01 mWh	416.16 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	129s 956ms	2	11.5 W	null
+40	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	1.07 Wh	512.63 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	160s 79ms	2	11.5 W	null
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
new file mode 100644
index 00000000..1be0c4ea
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
@@ -0,0 +1,67 @@
+CALCULATE_SEQSTATS:
+  python: 3.11.0
+CALC_GAPS:
+  awk: 1.3.4 20200120
+CLUSTALO_ALIGN:
+  clustalo: 1.2.4
+  pigz: 2.8)
+CLUSTALO_GUIDETREE:
+  clustalo: 1.2.4
+CONCAT_SEQSTATS:
+  csvtk: 0.31.0
+CONCAT_SIMSTATS:
+  csvtk: 0.31.0
+EXTRACT_PLDDT:
+  awk: 1.3.4 20200120
+FAMSA_ALIGN:
+  famsa: 2.4.1-45c9b2b (2025-05-09)
+FAMSA_GUIDETREE:
+  famsa: 2.2.2- (2022-10-09)
+FASTAVALIDATOR:
+  py_fasta_validator: 0.6
+KALIGN_ALIGN:
+  kalign: 3.4.0
+  pigz: 2.8)
+MAFFT_ALIGN:
+  mafft: 7.52
+  pigz: 2.8)
+MAFFT_GUIDETREE:
+  mafft: 7.525
+MAGUS_ALIGN:
+  MAGUS: 0.2.0
+  pigz: 2.8)
+MUSCLE5_ALIGN:
+  muscle: 5.1
+  pigz: 2.8)
+PARSE_SIM:
+  awk: 1.3.4 20200120
+  cat: 8.32
+PIGZ_COMPRESS:
+  pigz: 2.8
+REGRESSIVE_ALIGN:
+  tcoffee: 13.46.0.919e8c6b
+  pigz: 2.8)
+TCOFFEE_ALIGN:
+  tcoffee: 13.46.0.919e8c6b
+  pigz: 2.8)
+TCOFFEE_ALNCOMPARE_SP:
+  tcoffee: 13.46.0.919e8c6b
+  pigz: 2.8)
+TCOFFEE_ALNCOMPARE_TC:
+  tcoffee: 13.46.0.919e8c6b
+  pigz: 2.8)
+TCOFFEE_EXTRACTFROMPDB:
+  tcoffee: 13.46.0.919e8c6b
+TCOFFEE_SEQREFORMAT_SIM:
+  tcoffee: 13.46.0.919e8c6b
+TCOFFEE_TCS:
+  tcoffee: 13.46.0.919e8c6b
+  pigz: 2.8)
+UNTAR:
+  untar: 1.34
+UPP_ALIGN:
+  upp: 4.5.5
+  pigz: 2.4)
+Workflow:
+    nf-core/multiplesequencealign: v1.2.0dev
+    Nextflow: 25.04.6
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json
new file mode 100644
index 00000000..e4426a35
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json
@@ -0,0 +1,57 @@
+{
+    "input": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv",
+    "seqs": null,
+    "tools": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv",
+    "templates_suffix": ".pdb",
+    "pdbs_dir": null,
+    "tree": null,
+    "args_tree": null,
+    "aligner": null,
+    "args_aligner": null,
+    "skip_validation": false,
+    "skip_preprocessing": false,
+    "skip_pdbconversion": false,
+    "build_consensus": true,
+    "skip_stats": false,
+    "calc_sim": true,
+    "calc_seq_stats": true,
+    "extract_plddt": true,
+    "skip_eval": false,
+    "calc_sp": true,
+    "calc_tc": true,
+    "calc_irmsd": true,
+    "calc_gaps": true,
+    "calc_tcs": true,
+    "skip_compression": false,
+    "multiqc_config": null,
+    "multiqc_title": null,
+    "multiqc_logo": null,
+    "max_multiqc_email_size": "25.MB",
+    "multiqc_methods_description": null,
+    "skip_multiqc": false,
+    "outdir": "/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output",
+    "publish_dir_mode": "copy",
+    "email": null,
+    "email_on_fail": null,
+    "plaintext_email": false,
+    "monochrome_logs": false,
+    "hook_url": null,
+    "help": false,
+    "help_full": false,
+    "show_hidden": false,
+    "version": false,
+    "pipelines_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign",
+    "trace_report_suffix": "2025-10-17_15-37-58",
+    "config_profile_name": "Test profile",
+    "config_profile_description": "Minimal test dataset to check pipeline function",
+    "shiny_app": "/home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app",
+    "skip_shiny": false,
+    "skip_visualisation": false,
+    "custom_config_version": "master",
+    "custom_config_base": "https://raw.githubusercontent.com/nf-core/configs/master",
+    "config_profile_contact": null,
+    "config_profile_url": null,
+    "validate_params": true,
+    "use_gpu": false,
+    "modules_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/"
+}
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt
new file mode 100644
index 00000000..e12b94a0
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt
@@ -0,0 +1,426 @@
+# TC_SIMILARITY_MATRIX_FORMAT_01
+# SEQ_INDEX 1kbt 0
+# SEQ_INDEX 2crt 1
+# SEQ_INDEX 2cdx 2
+# SEQ_INDEX 1cdta 3
+# SEQ_INDEX 1tgxa 4
+# SEQ_INDEX 1kxia 5
+# SEQ_INDEX 1tfs 6
+# SEQ_INDEX 1drs 7
+# SEQ_INDEX 1txb 8
+# SEQ_INDEX 2ctx 9
+# SEQ_INDEX 1ntn 10
+# SEQ_INDEX 1lsi 11
+# SEQ_INDEX 2abxa 12
+# SEQ_INDEX 2nbta 13
+# SEQ_INDEX 1nean 14
+# SEQ_INDEX 1nor 15
+# SEQ_INDEX 1cod 16
+# SEQ_INDEX 1nxb 17
+# SEQ_INDEX 1ntx 18
+# SEQ_INDEX 1fas 19
+# PW_SEQ_DISTANCES 
+BOT	    0    1	 88.00  1kbt	  2crt	 88.00
+TOP	    1    0	 88.00  2crt	  1kbt	 88.00
+BOT	    0    2	 85.00  1kbt	  2cdx	 85.00
+TOP	    2    0	 85.00  2cdx	  1kbt	 85.00
+BOT	    0    3	 78.00  1kbt	 1cdta	 78.00
+TOP	    3    0	 78.00 1cdta	  1kbt	 78.00
+BOT	    0    4	 71.00  1kbt	 1tgxa	 71.00
+TOP	    4    0	 71.00 1tgxa	  1kbt	 71.00
+BOT	    0    5	 65.00  1kbt	 1kxia	 65.00
+TOP	    5    0	 65.00 1kxia	  1kbt	 65.00
+BOT	    0    6	 41.00  1kbt	  1tfs	 41.00
+TOP	    6    0	 41.00  1tfs	  1kbt	 41.00
+BOT	    0    7	 38.00  1kbt	  1drs	 38.00
+TOP	    7    0	 38.00  1drs	  1kbt	 38.00
+BOT	    0    8	 35.00  1kbt	  1txb	 35.00
+TOP	    8    0	 35.00  1txb	  1kbt	 35.00
+BOT	    0    9	 36.00  1kbt	  2ctx	 36.00
+TOP	    9    0	 36.00  2ctx	  1kbt	 36.00
+BOT	    0   10	 32.00  1kbt	  1ntn	 32.00
+TOP	   10    0	 32.00  1ntn	  1kbt	 32.00
+BOT	    0   11	 33.00  1kbt	  1lsi	 33.00
+TOP	   11    0	 33.00  1lsi	  1kbt	 33.00
+BOT	    0   12	 38.00  1kbt	 2abxa	 38.00
+TOP	   12    0	 38.00 2abxa	  1kbt	 38.00
+BOT	    0   13	 33.00  1kbt	 2nbta	 33.00
+TOP	   13    0	 33.00 2nbta	  1kbt	 33.00
+BOT	    0   14	 38.00  1kbt	 1nean	 38.00
+TOP	   14    0	 38.00 1nean	  1kbt	 38.00
+BOT	    0   15	 40.00  1kbt	  1nor	 40.00
+TOP	   15    0	 40.00  1nor	  1kbt	 40.00
+BOT	    0   16	 32.00  1kbt	  1cod	 32.00
+TOP	   16    0	 32.00  1cod	  1kbt	 32.00
+BOT	    0   17	 32.00  1kbt	  1nxb	 32.00
+TOP	   17    0	 32.00  1nxb	  1kbt	 32.00
+BOT	    0   18	 34.00  1kbt	  1ntx	 34.00
+TOP	   18    0	 34.00  1ntx	  1kbt	 34.00
+BOT	    0   19	 28.00  1kbt	  1fas	 28.00
+TOP	   19    0	 28.00  1fas	  1kbt	 28.00
+BOT	    1    2	 81.00  2crt	  2cdx	 81.00
+TOP	    2    1	 81.00  2cdx	  2crt	 81.00
+BOT	    1    3	 75.00  2crt	 1cdta	 75.00
+TOP	    3    1	 75.00 1cdta	  2crt	 75.00
+BOT	    1    4	 80.00  2crt	 1tgxa	 80.00
+TOP	    4    1	 80.00 1tgxa	  2crt	 80.00
+BOT	    1    5	 65.00  2crt	 1kxia	 65.00
+TOP	    5    1	 65.00 1kxia	  2crt	 65.00
+BOT	    1    6	 38.00  2crt	  1tfs	 38.00
+TOP	    6    1	 38.00  1tfs	  2crt	 38.00
+BOT	    1    7	 34.00  2crt	  1drs	 34.00
+TOP	    7    1	 34.00  1drs	  2crt	 34.00
+BOT	    1    8	 37.00  2crt	  1txb	 37.00
+TOP	    8    1	 37.00  1txb	  2crt	 37.00
+BOT	    1    9	 35.00  2crt	  2ctx	 35.00
+TOP	    9    1	 35.00  2ctx	  2crt	 35.00
+BOT	    1   10	 35.00  2crt	  1ntn	 35.00
+TOP	   10    1	 35.00  1ntn	  2crt	 35.00
+BOT	    1   11	 34.00  2crt	  1lsi	 34.00
+TOP	   11    1	 34.00  1lsi	  2crt	 34.00
+BOT	    1   12	 40.00  2crt	 2abxa	 40.00
+TOP	   12    1	 40.00 2abxa	  2crt	 40.00
+BOT	    1   13	 32.00  2crt	 2nbta	 32.00
+TOP	   13    1	 32.00 2nbta	  2crt	 32.00
+BOT	    1   14	 40.00  2crt	 1nean	 40.00
+TOP	   14    1	 40.00 1nean	  2crt	 40.00
+BOT	    1   15	 42.00  2crt	  1nor	 42.00
+TOP	   15    1	 42.00  1nor	  2crt	 42.00
+BOT	    1   16	 34.00  2crt	  1cod	 34.00
+TOP	   16    1	 34.00  1cod	  2crt	 34.00
+BOT	    1   17	 29.00  2crt	  1nxb	 29.00
+TOP	   17    1	 29.00  1nxb	  2crt	 29.00
+BOT	    1   18	 31.00  2crt	  1ntx	 31.00
+TOP	   18    1	 31.00  1ntx	  2crt	 31.00
+BOT	    1   19	 32.00  2crt	  1fas	 32.00
+TOP	   19    1	 32.00  1fas	  2crt	 32.00
+BOT	    2    3	 80.00  2cdx	 1cdta	 80.00
+TOP	    3    2	 80.00 1cdta	  2cdx	 80.00
+BOT	    2    4	 73.00  2cdx	 1tgxa	 73.00
+TOP	    4    2	 73.00 1tgxa	  2cdx	 73.00
+BOT	    2    5	 63.00  2cdx	 1kxia	 63.00
+TOP	    5    2	 63.00 1kxia	  2cdx	 63.00
+BOT	    2    6	 40.00  2cdx	  1tfs	 40.00
+TOP	    6    2	 40.00  1tfs	  2cdx	 40.00
+BOT	    2    7	 36.00  2cdx	  1drs	 36.00
+TOP	    7    2	 36.00  1drs	  2cdx	 36.00
+BOT	    2    8	 40.00  2cdx	  1txb	 40.00
+TOP	    8    2	 40.00  1txb	  2cdx	 40.00
+BOT	    2    9	 38.00  2cdx	  2ctx	 38.00
+TOP	    9    2	 38.00  2ctx	  2cdx	 38.00
+BOT	    2   10	 35.00  2cdx	  1ntn	 35.00
+TOP	   10    2	 35.00  1ntn	  2cdx	 35.00
+BOT	    2   11	 32.00  2cdx	  1lsi	 32.00
+TOP	   11    2	 32.00  1lsi	  2cdx	 32.00
+BOT	    2   12	 41.00  2cdx	 2abxa	 41.00
+TOP	   12    2	 41.00 2abxa	  2cdx	 41.00
+BOT	    2   13	 31.00  2cdx	 2nbta	 31.00
+TOP	   13    2	 31.00 2nbta	  2cdx	 31.00
+BOT	    2   14	 40.00  2cdx	 1nean	 40.00
+TOP	   14    2	 40.00 1nean	  2cdx	 40.00
+BOT	    2   15	 42.00  2cdx	  1nor	 42.00
+TOP	   15    2	 42.00  1nor	  2cdx	 42.00
+BOT	    2   16	 34.00  2cdx	  1cod	 34.00
+TOP	   16    2	 34.00  1cod	  2cdx	 34.00
+BOT	    2   17	 29.00  2cdx	  1nxb	 29.00
+TOP	   17    2	 29.00  1nxb	  2cdx	 29.00
+BOT	    2   18	 31.00  2cdx	  1ntx	 31.00
+TOP	   18    2	 31.00  1ntx	  2cdx	 31.00
+BOT	    2   19	 25.00  2cdx	  1fas	 25.00
+TOP	   19    2	 25.00  1fas	  2cdx	 25.00
+BOT	    3    4	 70.00 1cdta	 1tgxa	 70.00
+TOP	    4    3	 70.00 1tgxa	 1cdta	 70.00
+BOT	    3    5	 68.00 1cdta	 1kxia	 68.00
+TOP	    5    3	 68.00 1kxia	 1cdta	 68.00
+BOT	    3    6	 40.00 1cdta	  1tfs	 40.00
+TOP	    6    3	 40.00  1tfs	 1cdta	 40.00
+BOT	    3    7	 34.00 1cdta	  1drs	 34.00
+TOP	    7    3	 34.00  1drs	 1cdta	 34.00
+BOT	    3    8	 36.00 1cdta	  1txb	 36.00
+TOP	    8    3	 36.00  1txb	 1cdta	 36.00
+BOT	    3    9	 35.00 1cdta	  2ctx	 35.00
+TOP	    9    3	 35.00  2ctx	 1cdta	 35.00
+BOT	    3   10	 38.00 1cdta	  1ntn	 38.00
+TOP	   10    3	 38.00  1ntn	 1cdta	 38.00
+BOT	    3   11	 33.00 1cdta	  1lsi	 33.00
+TOP	   11    3	 33.00  1lsi	 1cdta	 33.00
+BOT	    3   12	 41.00 1cdta	 2abxa	 41.00
+TOP	   12    3	 41.00 2abxa	 1cdta	 41.00
+BOT	    3   13	 30.00 1cdta	 2nbta	 30.00
+TOP	   13    3	 30.00 2nbta	 1cdta	 30.00
+BOT	    3   14	 40.00 1cdta	 1nean	 40.00
+TOP	   14    3	 40.00 1nean	 1cdta	 40.00
+BOT	    3   15	 42.00 1cdta	  1nor	 42.00
+TOP	   15    3	 42.00  1nor	 1cdta	 42.00
+BOT	    3   16	 34.00 1cdta	  1cod	 34.00
+TOP	   16    3	 34.00  1cod	 1cdta	 34.00
+BOT	    3   17	 29.00 1cdta	  1nxb	 29.00
+TOP	   17    3	 29.00  1nxb	 1cdta	 29.00
+BOT	    3   18	 34.00 1cdta	  1ntx	 34.00
+TOP	   18    3	 34.00  1ntx	 1cdta	 34.00
+BOT	    3   19	 27.00 1cdta	  1fas	 27.00
+TOP	   19    3	 27.00  1fas	 1cdta	 27.00
+BOT	    4    5	 63.00 1tgxa	 1kxia	 63.00
+TOP	    5    4	 63.00 1kxia	 1tgxa	 63.00
+BOT	    4    6	 36.00 1tgxa	  1tfs	 36.00
+TOP	    6    4	 36.00  1tfs	 1tgxa	 36.00
+BOT	    4    7	 36.00 1tgxa	  1drs	 36.00
+TOP	    7    4	 36.00  1drs	 1tgxa	 36.00
+BOT	    4    8	 33.00 1tgxa	  1txb	 33.00
+TOP	    8    4	 33.00  1txb	 1tgxa	 33.00
+BOT	    4    9	 32.00 1tgxa	  2ctx	 32.00
+TOP	    9    4	 32.00  2ctx	 1tgxa	 32.00
+BOT	    4   10	 33.00 1tgxa	  1ntn	 33.00
+TOP	   10    4	 33.00  1ntn	 1tgxa	 33.00
+BOT	    4   11	 33.00 1tgxa	  1lsi	 33.00
+TOP	   11    4	 33.00  1lsi	 1tgxa	 33.00
+BOT	    4   12	 38.00 1tgxa	 2abxa	 38.00
+TOP	   12    4	 38.00 2abxa	 1tgxa	 38.00
+BOT	    4   13	 39.00 1tgxa	 2nbta	 39.00
+TOP	   13    4	 39.00 2nbta	 1tgxa	 39.00
+BOT	    4   14	 50.00 1tgxa	 1nean	 50.00
+TOP	   14    4	 50.00 1nean	 1tgxa	 50.00
+BOT	    4   15	 43.00 1tgxa	  1nor	 43.00
+TOP	   15    4	 43.00  1nor	 1tgxa	 43.00
+BOT	    4   16	 39.00 1tgxa	  1cod	 39.00
+TOP	   16    4	 39.00  1cod	 1tgxa	 39.00
+BOT	    4   17	 34.00 1tgxa	  1nxb	 34.00
+TOP	   17    4	 34.00  1nxb	 1tgxa	 34.00
+BOT	    4   18	 34.00 1tgxa	  1ntx	 34.00
+TOP	   18    4	 34.00  1ntx	 1tgxa	 34.00
+BOT	    4   19	 33.00 1tgxa	  1fas	 33.00
+TOP	   19    4	 33.00  1fas	 1tgxa	 33.00
+BOT	    5    6	 35.00 1kxia	  1tfs	 35.00
+TOP	    6    5	 35.00  1tfs	 1kxia	 35.00
+BOT	    5    7	 35.00 1kxia	  1drs	 35.00
+TOP	    7    5	 35.00  1drs	 1kxia	 35.00
+BOT	    5    8	 39.00 1kxia	  1txb	 39.00
+TOP	    8    5	 39.00  1txb	 1kxia	 39.00
+BOT	    5    9	 36.00 1kxia	  2ctx	 36.00
+TOP	    9    5	 36.00  2ctx	 1kxia	 36.00
+BOT	    5   10	 34.00 1kxia	  1ntn	 34.00
+TOP	   10    5	 34.00  1ntn	 1kxia	 34.00
+BOT	    5   11	 37.00 1kxia	  1lsi	 37.00
+TOP	   11    5	 37.00  1lsi	 1kxia	 37.00
+BOT	    5   12	 45.00 1kxia	 2abxa	 45.00
+TOP	   12    5	 45.00 2abxa	 1kxia	 45.00
+BOT	    5   13	 42.00 1kxia	 2nbta	 42.00
+TOP	   13    5	 42.00 2nbta	 1kxia	 42.00
+BOT	    5   14	 44.00 1kxia	 1nean	 44.00
+TOP	   14    5	 44.00 1nean	 1kxia	 44.00
+BOT	    5   15	 41.00 1kxia	  1nor	 41.00
+TOP	   15    5	 41.00  1nor	 1kxia	 41.00
+BOT	    5   16	 35.00 1kxia	  1cod	 35.00
+TOP	   16    5	 35.00  1cod	 1kxia	 35.00
+BOT	    5   17	 33.00 1kxia	  1nxb	 33.00
+TOP	   17    5	 33.00  1nxb	 1kxia	 33.00
+BOT	    5   18	 38.00 1kxia	  1ntx	 38.00
+TOP	   18    5	 38.00  1ntx	 1kxia	 38.00
+BOT	    5   19	 40.00 1kxia	  1fas	 40.00
+TOP	   19    5	 40.00  1fas	 1kxia	 40.00
+BOT	    6    7	 52.00  1tfs	  1drs	 52.00
+TOP	    7    6	 52.00  1drs	  1tfs	 52.00
+BOT	    6    8	 27.00  1tfs	  1txb	 27.00
+TOP	    8    6	 27.00  1txb	  1tfs	 27.00
+BOT	    6    9	 36.00  1tfs	  2ctx	 36.00
+TOP	    9    6	 36.00  2ctx	  1tfs	 36.00
+BOT	    6   10	 35.00  1tfs	  1ntn	 35.00
+TOP	   10    6	 35.00  1ntn	  1tfs	 35.00
+BOT	    6   11	 37.00  1tfs	  1lsi	 37.00
+TOP	   11    6	 37.00  1lsi	  1tfs	 37.00
+BOT	    6   12	 42.00  1tfs	 2abxa	 42.00
+TOP	   12    6	 42.00 2abxa	  1tfs	 42.00
+BOT	    6   13	 37.00  1tfs	 2nbta	 37.00
+TOP	   13    6	 37.00 2nbta	  1tfs	 37.00
+BOT	    6   14	 48.00  1tfs	 1nean	 48.00
+TOP	   14    6	 48.00 1nean	  1tfs	 48.00
+BOT	    6   15	 46.00  1tfs	  1nor	 46.00
+TOP	   15    6	 46.00  1nor	  1tfs	 46.00
+BOT	    6   16	 43.00  1tfs	  1cod	 43.00
+TOP	   16    6	 43.00  1cod	  1tfs	 43.00
+BOT	    6   17	 43.00  1tfs	  1nxb	 43.00
+TOP	   17    6	 43.00  1nxb	  1tfs	 43.00
+BOT	    6   18	 48.00  1tfs	  1ntx	 48.00
+TOP	   18    6	 48.00  1ntx	  1tfs	 48.00
+BOT	    6   19	 35.00  1tfs	  1fas	 35.00
+TOP	   19    6	 35.00  1fas	  1tfs	 35.00
+BOT	    7    8	 38.00  1drs	  1txb	 38.00
+TOP	    8    7	 38.00  1txb	  1drs	 38.00
+BOT	    7    9	 32.00  1drs	  2ctx	 32.00
+TOP	    9    7	 32.00  2ctx	  1drs	 32.00
+BOT	    7   10	 35.00  1drs	  1ntn	 35.00
+TOP	   10    7	 35.00  1ntn	  1drs	 35.00
+BOT	    7   11	 34.00  1drs	  1lsi	 34.00
+TOP	   11    7	 34.00  1lsi	  1drs	 34.00
+BOT	    7   12	 37.00  1drs	 2abxa	 37.00
+TOP	   12    7	 37.00 2abxa	  1drs	 37.00
+BOT	    7   13	 29.00  1drs	 2nbta	 29.00
+TOP	   13    7	 29.00 2nbta	  1drs	 29.00
+BOT	    7   14	 54.00  1drs	 1nean	 54.00
+TOP	   14    7	 54.00 1nean	  1drs	 54.00
+BOT	    7   15	 52.00  1drs	  1nor	 52.00
+TOP	   15    7	 52.00  1nor	  1drs	 52.00
+BOT	    7   16	 40.00  1drs	  1cod	 40.00
+TOP	   16    7	 40.00  1cod	  1drs	 40.00
+BOT	    7   17	 54.00  1drs	  1nxb	 54.00
+TOP	   17    7	 54.00  1nxb	  1drs	 54.00
+BOT	    7   18	 53.00  1drs	  1ntx	 53.00
+TOP	   18    7	 53.00  1ntx	  1drs	 53.00
+BOT	    7   19	 39.00  1drs	  1fas	 39.00
+TOP	   19    7	 39.00  1fas	  1drs	 39.00
+BOT	    8    9	 73.00  1txb	  2ctx	 73.00
+TOP	    9    8	 73.00  2ctx	  1txb	 73.00
+BOT	    8   10	 66.00  1txb	  1ntn	 66.00
+TOP	   10    8	 66.00  1ntn	  1txb	 66.00
+BOT	    8   11	 60.00  1txb	  1lsi	 60.00
+TOP	   11    8	 60.00  1lsi	  1txb	 60.00
+BOT	    8   12	 56.00  1txb	 2abxa	 56.00
+TOP	   12    8	 56.00 2abxa	  1txb	 56.00
+BOT	    8   13	 53.00  1txb	 2nbta	 53.00
+TOP	   13    8	 53.00 2nbta	  1txb	 53.00
+BOT	    8   14	 48.00  1txb	 1nean	 48.00
+TOP	   14    8	 48.00 1nean	  1txb	 48.00
+BOT	    8   15	 50.00  1txb	  1nor	 50.00
+TOP	   15    8	 50.00  1nor	  1txb	 50.00
+BOT	    8   16	 49.00  1txb	  1cod	 49.00
+TOP	   16    8	 49.00  1cod	  1txb	 49.00
+BOT	    8   17	 42.00  1txb	  1nxb	 42.00
+TOP	   17    8	 42.00  1nxb	  1txb	 42.00
+BOT	    8   18	 53.00  1txb	  1ntx	 53.00
+TOP	   18    8	 53.00  1ntx	  1txb	 53.00
+BOT	    8   19	 37.00  1txb	  1fas	 37.00
+TOP	   19    8	 37.00  1fas	  1txb	 37.00
+BOT	    9   10	 60.00  2ctx	  1ntn	 60.00
+TOP	   10    9	 60.00  1ntn	  2ctx	 60.00
+BOT	    9   11	 53.00  2ctx	  1lsi	 53.00
+TOP	   11    9	 53.00  1lsi	  2ctx	 53.00
+BOT	    9   12	 52.00  2ctx	 2abxa	 52.00
+TOP	   12    9	 52.00 2abxa	  2ctx	 52.00
+BOT	    9   13	 49.00  2ctx	 2nbta	 49.00
+TOP	   13    9	 49.00 2nbta	  2ctx	 49.00
+BOT	    9   14	 44.00  2ctx	 1nean	 44.00
+TOP	   14    9	 44.00 1nean	  2ctx	 44.00
+BOT	    9   15	 43.00  2ctx	  1nor	 43.00
+TOP	   15    9	 43.00  1nor	  2ctx	 43.00
+BOT	    9   16	 44.00  2ctx	  1cod	 44.00
+TOP	   16    9	 44.00  1cod	  2ctx	 44.00
+BOT	    9   17	 44.00  2ctx	  1nxb	 44.00
+TOP	   17    9	 44.00  1nxb	  2ctx	 44.00
+BOT	    9   18	 48.00  2ctx	  1ntx	 48.00
+TOP	   18    9	 48.00  1ntx	  2ctx	 48.00
+BOT	    9   19	 28.00  2ctx	  1fas	 28.00
+TOP	   19    9	 28.00  1fas	  2ctx	 28.00
+BOT	   10   11	 60.00  1ntn	  1lsi	 60.00
+TOP	   11   10	 60.00  1lsi	  1ntn	 60.00
+BOT	   10   12	 61.00  1ntn	 2abxa	 61.00
+TOP	   12   10	 61.00 2abxa	  1ntn	 61.00
+BOT	   10   13	 53.00  1ntn	 2nbta	 53.00
+TOP	   13   10	 53.00 2nbta	  1ntn	 53.00
+BOT	   10   14	 46.00  1ntn	 1nean	 46.00
+TOP	   14   10	 46.00 1nean	  1ntn	 46.00
+BOT	   10   15	 43.00  1ntn	  1nor	 43.00
+TOP	   15   10	 43.00  1nor	  1ntn	 43.00
+BOT	   10   16	 45.00  1ntn	  1cod	 45.00
+TOP	   16   10	 45.00  1cod	  1ntn	 45.00
+BOT	   10   17	 43.00  1ntn	  1nxb	 43.00
+TOP	   17   10	 43.00  1nxb	  1ntn	 43.00
+BOT	   10   18	 47.00  1ntn	  1ntx	 47.00
+TOP	   18   10	 47.00  1ntx	  1ntn	 47.00
+BOT	   10   19	 34.00  1ntn	  1fas	 34.00
+TOP	   19   10	 34.00  1fas	  1ntn	 34.00
+BOT	   11   12	 56.00  1lsi	 2abxa	 56.00
+TOP	   12   11	 56.00 2abxa	  1lsi	 56.00
+BOT	   11   13	 48.00  1lsi	 2nbta	 48.00
+TOP	   13   11	 48.00 2nbta	  1lsi	 48.00
+BOT	   11   14	 47.00  1lsi	 1nean	 47.00
+TOP	   14   11	 47.00 1nean	  1lsi	 47.00
+BOT	   11   15	 47.00  1lsi	  1nor	 47.00
+TOP	   15   11	 47.00  1nor	  1lsi	 47.00
+BOT	   11   16	 49.00  1lsi	  1cod	 49.00
+TOP	   16   11	 49.00  1cod	  1lsi	 49.00
+BOT	   11   17	 41.00  1lsi	  1nxb	 41.00
+TOP	   17   11	 41.00  1nxb	  1lsi	 41.00
+BOT	   11   18	 46.00  1lsi	  1ntx	 46.00
+TOP	   18   11	 46.00  1ntx	  1lsi	 46.00
+BOT	   11   19	 37.00  1lsi	  1fas	 37.00
+TOP	   19   11	 37.00  1fas	  1lsi	 37.00
+BOT	   12   13	 52.00 2abxa	 2nbta	 52.00
+TOP	   13   12	 52.00 2nbta	 2abxa	 52.00
+BOT	   12   14	 48.00 2abxa	 1nean	 48.00
+TOP	   14   12	 48.00 1nean	 2abxa	 48.00
+BOT	   12   15	 45.00 2abxa	  1nor	 45.00
+TOP	   15   12	 45.00  1nor	 2abxa	 45.00
+BOT	   12   16	 44.00 2abxa	  1cod	 44.00
+TOP	   16   12	 44.00  1cod	 2abxa	 44.00
+BOT	   12   17	 40.00 2abxa	  1nxb	 40.00
+TOP	   17   12	 40.00  1nxb	 2abxa	 40.00
+BOT	   12   18	 43.00 2abxa	  1ntx	 43.00
+TOP	   18   12	 43.00  1ntx	 2abxa	 43.00
+BOT	   12   19	 50.00 2abxa	  1fas	 50.00
+TOP	   19   12	 50.00  1fas	 2abxa	 50.00
+BOT	   13   14	 46.00 2nbta	 1nean	 46.00
+TOP	   14   13	 46.00 1nean	 2nbta	 46.00
+BOT	   13   15	 43.00 2nbta	  1nor	 43.00
+TOP	   15   13	 43.00  1nor	 2nbta	 43.00
+BOT	   13   16	 44.00 2nbta	  1cod	 44.00
+TOP	   16   13	 44.00  1cod	 2nbta	 44.00
+BOT	   13   17	 42.00 2nbta	  1nxb	 42.00
+TOP	   17   13	 42.00  1nxb	 2nbta	 42.00
+BOT	   13   18	 35.00 2nbta	  1ntx	 35.00
+TOP	   18   13	 35.00  1ntx	 2nbta	 35.00
+BOT	   13   19	 33.00 2nbta	  1fas	 33.00
+TOP	   19   13	 33.00  1fas	 2nbta	 33.00
+BOT	   14   15	 86.00 1nean	  1nor	 86.00
+TOP	   15   14	 86.00  1nor	 1nean	 86.00
+BOT	   14   16	 78.00 1nean	  1cod	 78.00
+TOP	   16   14	 78.00  1cod	 1nean	 78.00
+BOT	   14   17	 76.00 1nean	  1nxb	 76.00
+TOP	   17   14	 76.00  1nxb	 1nean	 76.00
+BOT	   14   18	 67.00 1nean	  1ntx	 67.00
+TOP	   18   14	 67.00  1ntx	 1nean	 67.00
+BOT	   14   19	 35.00 1nean	  1fas	 35.00
+TOP	   19   14	 35.00  1fas	 1nean	 35.00
+BOT	   15   16	 77.00  1nor	  1cod	 77.00
+TOP	   16   15	 77.00  1cod	  1nor	 77.00
+BOT	   15   17	 72.00  1nor	  1nxb	 72.00
+TOP	   17   15	 72.00  1nxb	  1nor	 72.00
+BOT	   15   18	 67.00  1nor	  1ntx	 67.00
+TOP	   18   15	 67.00  1ntx	  1nor	 67.00
+BOT	   15   19	 30.00  1nor	  1fas	 30.00
+TOP	   19   15	 30.00  1fas	  1nor	 30.00
+BOT	   16   17	 58.00  1cod	  1nxb	 58.00
+TOP	   17   16	 58.00  1nxb	  1cod	 58.00
+BOT	   16   18	 58.00  1cod	  1ntx	 58.00
+TOP	   18   16	 58.00  1ntx	  1cod	 58.00
+BOT	   16   19	 36.00  1cod	  1fas	 36.00
+TOP	   19   16	 36.00  1fas	  1cod	 36.00
+BOT	   17   18	 61.00  1nxb	  1ntx	 61.00
+TOP	   18   17	 61.00  1ntx	  1nxb	 61.00
+BOT	   17   19	 31.00  1nxb	  1fas	 31.00
+TOP	   19   17	 31.00  1fas	  1nxb	 31.00
+BOT	   18   19	 46.00  1ntx	  1fas	 46.00
+TOP	   19   18	 46.00  1fas	  1ntx	 46.00
+AVG	 0	  1kbt	     *	 46.16
+AVG	 1	  2crt	     *	 46.42
+AVG	 2	  2cdx	     *	 46.11
+AVG	 3	 1cdta	     *	 45.47
+AVG	 4	 1tgxa	     *	 45.79
+AVG	 5	 1kxia	     *	 45.16
+AVG	 6	  1tfs	     *	 39.95
+AVG	 7	  1drs	     *	 40.11
+AVG	 8	  1txb	     *	 45.89
+AVG	 9	  2ctx	     *	 43.05
+AVG	 10	  1ntn	     *	 43.95
+AVG	 11	  1lsi	     *	 43.00
+AVG	 12	 2abxa	     *	 45.74
+AVG	 13	 2nbta	     *	 40.58
+AVG	 14	 1nean	     *	 51.32
+AVG	 15	  1nor	     *	 50.05
+AVG	 16	  1cod	     *	 45.95
+AVG	 17	  1nxb	     *	 43.84
+AVG	 18	  1ntx	     *	 46.00
+AVG	 19	  1fas	     *	 34.53
+TOT	   TOT	     *	 44.45
+AVG	   AVG	     *	 44.45
+VAR	   VAR	     *	 185.43
+STD	   STD	     *	 13.62
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
new file mode 100644
index 00000000..24c4672f
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
@@ -0,0 +1,21 @@
+id,seq_id,sequence length
+toxin-ref,1kbt,60
+toxin-ref,2crt,60
+toxin-ref,2cdx,60
+toxin-ref,1cdta,60
+toxin-ref,1tgxa,60
+toxin-ref,1kxia,62
+toxin-ref,1tfs,60
+toxin-ref,1drs,59
+toxin-ref,1txb,73
+toxin-ref,2ctx,71
+toxin-ref,1ntn,72
+toxin-ref,1lsi,66
+toxin-ref,2abxa,74
+toxin-ref,2nbta,66
+toxin-ref,1nean,61
+toxin-ref,1nor,61
+toxin-ref,1cod,62
+toxin-ref,1nxb,62
+toxin-ref,1ntx,60
+toxin-ref,1fas,61
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
new file mode 100644
index 00000000..3c9873e2
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
@@ -0,0 +1,78 @@
+(
+(
+1fas:0.347519
+,
+(
+1drs:0.329979
+,
+(
+1tfs:0.282813
+,
+(
+1ntx:0.21875
+,
+(
+1nxb:0.190838
+,
+(
+1cod:0.135246
+,
+(
+1nean:0.0655738
+,
+1nor:0.0655738
+):0.0696721
+):0.0555923
+):0.0279118
+):0.0640625
+):0.0471663
+):0.0175399
+):0.051554
+,
+(
+(
+1kxia:0.225521
+,
+(
+1tgxa:0.138542
+,
+(
+1cdta:0.108333
+,
+(
+2cdx:0.0833333
+,
+(
+1kbt:0.0583333
+,
+2crt:0.0583333
+):0.025
+):0.025
+):0.0302083
+):0.0869792
+):0.146659
+,
+(
+2nbta:0.295455
+,
+(
+2abxa:0.235201
+,
+(
+1lsi:0.234848
+,
+(
+1ntn:0.192488
+,
+(
+1txb:0.15493
+,
+2ctx:0.15493
+):0.0375587
+):0.0423602
+):0.000352517
+):0.0602536
+):0.0767252
+):0.0268929
+)
+;
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd
new file mode 100644
index 00000000..86f0ede9
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd
@@ -0,0 +1 @@
+((1tfs:1.0,(1fas:1.0,(1drs:1.0,(1ntx:1.0,(1nxb:1.0,(1cod:1.0,(1nean:1.0,1nor:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0,((1kxia:1.0,(1tgxa:1.0,(1cdta:1.0,(2cdx:1.0,(1kbt:1.0,2crt:1.0):1.0):1.0):1.0):1.0):1.0,(2nbta:1.0,(1lsi:1.0,(2abxa:1.0,(1ntn:1.0,(1txb:1.0,2ctx:1.0):1.0):1.0):1.0):1.0):1.0):1.0);
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd
new file mode 100644
index 00000000..ed5b774d
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd
@@ -0,0 +1 @@
+(((((2abxa:1.0,(1ntn:1.0,(1txb:1.0,2ctx:1.0):1.0):1.0):1.0,1lsi:1.0):1.0,((1fas:1.0,((1ntx:1.0,(((1nean:1.0,1nor:1.0):1.0,1cod:1.0):1.0,1nxb:1.0):1.0):1.0,1drs:1.0):1.0):1.0,1tfs:1.0):1.0):1.0,((((2cdx:1.0,(1kbt:1.0,2crt:1.0):1.0):1.0,1cdta:1.0):1.0,1tgxa:1.0):1.0,1kxia:1.0):1.0):1.0,2nbta:1.0);
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd
new file mode 100644
index 00000000..f8d119ba
--- /dev/null
+++ b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd
@@ -0,0 +1,41 @@
+((((((
+1kbt
+:0.23056,
+2cdx
+:0.23056):0.05270,
+2crt
+:0.28326):0.16720,
+1tgxa
+:0.45045):0.07675,
+1cdta
+:0.52721):0.01204,
+1kxia
+:0.53925):0.32358,((
+1tfs
+:0.82463,((
+1drs
+:0.77090,((((
+1nean
+:0.40440,
+1nor
+:0.40440):0.10350,
+1cod
+:0.50790):0.13442,
+1ntx
+:0.64232):0.01116,
+1nxb
+:0.65348):0.11742):0.03094,((((
+1txb
+:0.48209,
+2ctx
+:0.48209):0.06106,(
+1ntn
+:0.50924,
+1lsi
+:0.50924):0.03391):0.06244,
+2abxa
+:0.60559):0.14646,
+2nbta
+:0.75205):0.04979):0.02279):0.01428,
+1fas
+:0.83891):0.02392);
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log
new file mode 100644
index 00000000..d9be2d8c
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log
@@ -0,0 +1,759 @@
+Oct-17 13:11:07.835 [main] DEBUG nextflow.cli.Launcher - $> nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json -ansi-log false -profile test -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work
+Oct-17 13:11:07.937 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 25.04.6
+Oct-17 13:11:07.980 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/luisasantus/.nextflow/plugins; core-plugins: nf-amazon@2.15.0,nf-azure@1.16.0,nf-cloudcache@0.4.3,nf-codecommit@0.2.3,nf-console@1.2.1,nf-google@1.21.1,nf-k8s@1.0.0,nf-tower@1.11.4,nf-wave@1.12.1
+Oct-17 13:11:08.018 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
+Oct-17 13:11:08.019 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
+Oct-17 13:11:08.030 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
+Oct-17 13:11:08.060 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
+Oct-17 13:11:08.099 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 13:11:08.112 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 13:11:08.112 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+Oct-17 13:11:08.114 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 13:11:08.115 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
+Oct-17 13:11:08.115 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+Oct-17 13:11:08.165 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /home/luisasantus/.nextflow/secrets/store.json
+Oct-17 13:11:08.169 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@f9b5552] - activable => nextflow.secret.LocalSecretsProvider@f9b5552
+Oct-17 13:11:08.211 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test`
+Oct-17 13:11:11.136 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test`
+Oct-17 13:11:11.706 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test`
+Oct-17 13:11:11.745 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [bih, cfc_dev, uzl_omics, ifb_core, embl_hd, denbi_qbic, alice, mjolnir_globe, uppmax, giga, incliva, ilifu, ki_luria, uge, icr_alma, rosalind_uge, test_conda, lugh, mccleary, unibe_ibu, vai, czbiohub_aws, jax, roslin, tes, test_tiny, scw, unc_longleaf, tigem, tubingen_apg, apollo, ipop_up, vsc_calcua, pdc_kth, ceci_nic5, ccga_cau, humantechnopole, stjude, daisybio, eddie, medair, biowulf, apptainer, bi, bigpurple, adcra, cedars, pawsey_setonix, vsc_kul_uhasselt, pawsey_nimbus, ucl_myriad, utd_ganymede, charliecloud, fred_hutch, seattlechildrens, icr_davros, ceres, munin, rosalind, hasta, cfc, emulate_amd64, uzh, shu_bmrc, ebi_codon_slurm, ebc, ccga_dx, crick, test_pdb, ku_sund_danhead, marvin, shifter, biohpc_gen, mana, mamba, york_viking, unc_lccc, wehi, test_no_sheet, awsbatch, wustl_htcf, arcc, ceci_dragon2, imperial, maestro, software_license, cannon, genotoul, nci_gadi, abims, eva_grace, janelia, nu_genomics, googlebatch, oist, sahmri, kaust, alliance_canada, arm64, mpcdf, leicester, vsc_ugent, create, sage, cambridge, jex, podman, ebi_codon, cheaha, xanadu, nyu_hpc, test, marjorie, computerome, ucd_sonic, gpu, seg_globe, mssm, sanger, dkfz, bluebear, pasteur, einstein, ethz_euler, m3c, test_full, imb, ucl_cscluster, tuos_stanage, azurebatch, hki, seadragon, crukmi, csiro_petrichor, qmul_apocrita, wave, docker, engaging, gis, hypatia, psmn, eva, unity, cropdiversityhpc, nygc, easy_deploy, fgcz, conda, crg, singularity, mpcdf_viper, pe2, dirac, self_hosted_runner, tufts, uw_hyak_pedslabs, binac2, debug, genouest, cbe, unsw_katana, utd_juno, phoenix, seawulf, uod_hpc, fub_curta, lovelace, uct_hpc, aws_tower, binac, fsu_draco]
+Oct-17 13:11:11.798 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default
+Oct-17 13:11:11.817 [main] INFO  nextflow.cli.CmdRun - Launching `/home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf` [furious_sax] DSL2 - revision: af24e956f9
+Oct-17 13:11:11.819 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins declared=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2]
+Oct-17 13:11:11.819 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
+Oct-17 13:11:11.822 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2, nf-tower@1.11.4]
+Oct-17 13:11:11.824 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-schema version: 2.5.1
+Oct-17 13:11:11.833 [main] INFO  nextflow.plugin.PluginUpdater - Downloading plugin nf-schema@2.5.1
+Oct-17 13:11:12.606 [main] INFO  org.pf4j.util.FileUtils - Expanded plugin zip 'nf-schema-2.5.1.zip' in 'nf-schema-2.5.1'
+Oct-17 13:11:12.615 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-schema@2.5.1' resolved
+Oct-17 13:11:12.616 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-schema@2.5.1'
+Oct-17 13:11:12.622 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-schema@2.5.1
+Oct-17 13:11:12.622 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-co2footprint version: 1.0.0
+Oct-17 13:11:12.623 [main] INFO  nextflow.plugin.PluginUpdater - Downloading plugin nf-co2footprint@1.0.0
+Oct-17 13:11:13.134 [main] INFO  org.pf4j.util.FileUtils - Expanded plugin zip 'nf-co2footprint-1.0.0.zip' in 'nf-co2footprint-1.0.0'
+Oct-17 13:11:13.136 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-co2footprint@1.0.0' resolved
+Oct-17 13:11:13.136 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-co2footprint@1.0.0'
+Oct-17 13:11:13.141 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-co2footprint@1.0.0
+Oct-17 13:11:13.141 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-prov version: 1.2.2
+Oct-17 13:11:13.143 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-prov@1.2.2' resolved
+Oct-17 13:11:13.143 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-prov@1.2.2'
+Oct-17 13:11:13.145 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-prov@1.2.2
+Oct-17 13:11:13.145 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-tower version: 1.11.4
+Oct-17 13:11:13.146 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-tower@1.11.4' resolved
+Oct-17 13:11:13.147 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-tower@1.11.4'
+Oct-17 13:11:13.159 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-tower@1.11.4
+Oct-17 13:11:13.229 [main] DEBUG nextflow.Session - Session UUID: c4db47c6-94b9-4adc-a834-3ba6f1a223b2
+Oct-17 13:11:13.230 [main] DEBUG nextflow.Session - Run name: furious_sax
+Oct-17 13:11:13.230 [main] DEBUG nextflow.Session - Executor pool size: 8
+Oct-17 13:11:13.240 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null
+Oct-17 13:11:13.248 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
+Oct-17 13:11:13.293 [main] DEBUG nextflow.cli.CmdRun - 
+  Version: 25.04.6 build 5954
+  Created: 01-07-2025 11:27 UTC (13:27 CEST)
+  System: Linux 5.15.0-134-generic
+  Runtime: Groovy 4.0.26 on OpenJDK 64-Bit Server VM 21.0.7+6-Ubuntu-0ubuntu120.04
+  Encoding: UTF-8 (UTF-8)
+  Process: 1932485@luisasantus-HP-EliteDesk-800-G5-TWR [127.0.1.1]
+  CPUs: 8 - Mem: 31.1 GB (781.3 MB) - Swap: 2 GB (785.5 MB)
+Oct-17 13:11:13.323 [main] DEBUG nextflow.Session - Work-dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work [ext2/ext3]
+Oct-17 13:11:13.369 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
+Oct-17 13:11:13.397 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
+Oct-17 13:11:13.408 [main] DEBUG nextflow.Session - Observer factory: CO2FootprintFactory
+Oct-17 13:11:13.466 [main] INFO  n.co2footprint.CO2FootprintFactory - nf-co2footprint plugin  ~  version 1.0.0
+Oct-17 13:11:13.467 [main] INFO  n.co2footprint.CO2FootprintFactory - 🔕 Repeated task-specific messages (🔁) are only logged once in the console. Further occurrences are logged at DEBUG level, appearing only in the `.nextflow.log` file.
+Oct-17 13:11:14.617 [main] WARN  n.c.DataContainers.CIValueComputer - No location provided. Attempting to retrieve GLOBAL carbon intensity value.
+Oct-17 13:11:14.624 [main] INFO  n.c.DataContainers.CIDataMatrix - Using carbon intensity for GLOBAL from fallback table: 480.0 gCO₂eq/kWh.
+Oct-17 13:11:14.626 [main] DEBUG n.co2footprint.CO2FootprintConfig - No executor found in config under process.executor.
+Oct-17 13:11:14.648 [main] DEBUG nextflow.Session - Observer factory: ProvObserverFactory
+Oct-17 13:11:14.681 [main] DEBUG nextflow.Session - Observer factory: TowerFactory
+Oct-17 13:11:14.689 [main] DEBUG nextflow.Session - Observer factory (v2): LinObserverFactory
+Oct-17 13:11:14.699 [main] DEBUG nextflow.Session - Observer factory (v2): ValidationObserverFactory
+Oct-17 13:11:14.760 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
+Oct-17 13:11:14.793 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 9; maxThreads: 1000
+Oct-17 13:11:14.997 [main] DEBUG nextflow.Session - Session start
+Oct-17 13:11:15.002 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
+Oct-17 13:11:15.007 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow started -- co2e outputs: [co2eTrace:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt, co2eSummary:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt, co2eReport:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html]
+Oct-17 13:11:15.211 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
+Oct-17 13:11:16.069 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
+Oct-17 13:11:16.083 [main] DEBUG n.validation.config.ValidationConfig - Set `validation.monochromeLogs` to true due to the ANSI log settings.
+Oct-17 13:11:16.085 [main] DEBUG n.validation.config.ValidationConfig - Added the following parameters to the ignored parameters: [genomes, fasta, igenomes_base, genome]
+Oct-17 13:11:17.024 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
+Oct-17 13:11:17.025 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
+Oct-17 13:11:17.026 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
+Oct-17 13:11:17.033 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
+Oct-17 13:11:17.034 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
+Oct-17 13:11:21.033 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
+Oct-17 13:11:21.034 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
+Oct-17 13:11:21.035 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
+Oct-17 13:11:21.040 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
+Oct-17 13:11:21.041 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
+Oct-17 13:11:21.286 [main] INFO  nextflow.Nextflow - 
+------------------------------------------------------
+                                        ,--./,-.
+        ___     __   __   __   ___     /,-._.--~'
+  |\ | |__  __ /  ` /  \ |__) |__         }  {
+  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
+                                        `._,._,'
+  nf-core/multiplesequencealign 1.2.0dev
+------------------------------------------------------
+
+Oct-17 13:11:21.334 [main] INFO  nextflow.Nextflow - Basic Input/output options
+  input                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv
+  outdir                      : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output
+
+Tools input options
+  tools                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv
+
+Align options
+  build_consensus             : true
+
+Stats options
+  calc_sim                    : true
+  calc_seq_stats              : true
+  extract_plddt               : true
+
+Eval options
+  calc_irmsd                  : true
+  calc_tcs                    : true
+
+Reports options
+  shiny_app                   : /home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app
+
+Institutional config options
+  config_profile_name         : Test profile
+  config_profile_description  : Minimal test dataset to check pipeline function
+
+Generic options
+  pipelines_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign
+  trace_report_suffix         : 2025-10-17_13-11-11
+
+Core Nextflow options
+  runName                     : furious_sax
+  launchDir                   : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6
+  workDir                     : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work
+  projectDir                  : /home/luisasantus/Desktop/multiplesequencealign
+  userName                    : luisasantus
+  profile                     : test
+  configFiles                 : /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
+
+!! Only displaying parameters that differ from the pipeline defaults !!
+------------------------------------------------------
+Oct-17 13:11:21.334 [main] INFO  nextflow.Nextflow - 
+* The pipeline
+    https://doi.org/10.5281/zenodo.13889386
+
+* The nf-core framework
+    https://doi.org/10.1038/s41587-020-0439-x
+
+* Software dependencies
+    https://github.com/nf-core/multiplesequencealign/blob/master/CITATIONS.md
+
+Oct-17 13:11:21.343 [main] DEBUG n.v.parameters.ParameterValidator - Starting parameters validation
+Oct-17 13:11:21.744 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv
+Oct-17 13:11:23.046 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv' passed!
+Oct-17 13:11:23.412 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv
+Oct-17 13:11:23.474 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv' passed!
+Oct-17 13:11:23.613 [main] WARN  n.v.logging.ValidationLogger - The following invalid input values have been detected:
+
+* --modules_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/
+
+
+Oct-17 13:11:23.615 [main] DEBUG n.v.parameters.ParameterValidator - Finishing parameters validation
+Oct-17 13:11:24.336 [main] WARN  n.v.logging.ValidationLogger - Found the following unidentified headers in /nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv:
+	- dependencies
+
+Oct-17 13:11:24.567 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 13:11:24.572 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 13:11:24.573 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 13:11:24.581 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.582 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.589 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
+Oct-17 13:11:24.597 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=8; memory=31.1 GB; capacity=8; pollInterval=100ms; dumpInterval=5m
+Oct-17 13:11:24.600 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
+Oct-17 13:11:24.628 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.695 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 13:11:24.696 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 13:11:24.698 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 13:11:24.700 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.700 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.701 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 13:11:24.717 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 13:11:24.718 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 13:11:24.723 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.723 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.724 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.741 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 13:11:24.743 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 13:11:24.744 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 13:11:24.746 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.747 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.749 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.813 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 13:11:24.814 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CREATE_TEMPLATE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 13:11:24.816 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 13:11:24.816 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 13:11:24.818 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.818 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.818 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.856 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 13:11:24.858 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 13:11:24.859 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_SEQREFORMAT_SIM` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 13:11:24.862 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 13:11:24.863 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 13:11:24.864 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.864 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.865 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.876 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 13:11:24.877 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 13:11:24.878 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 13:11:24.879 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.879 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.880 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 13:11:24.901 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 13:11:24.902 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SIMSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 13:11:24.902 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 13:11:24.903 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 13:11:24.906 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.906 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.907 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.919 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 13:11:24.920 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALCULATE_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 13:11:24.922 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 13:11:24.923 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 13:11:24.926 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.926 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.927 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.934 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 13:11:24.935 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 13:11:24.936 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 13:11:24.936 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 13:11:24.937 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 13:11:24.939 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.940 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.940 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.951 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 13:11:24.951 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:EXTRACT_PLDDT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 13:11:24.952 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 13:11:24.952 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 13:11:24.955 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.956 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.956 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.967 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 13:11:24.968 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 13:11:24.968 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 13:11:24.969 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 13:11:24.973 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:24.974 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:24.975 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS': maxForks=0; fair=false; array=0
+Oct-17 13:11:24.997 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 13:11:24.999 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 13:11:24.999 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 13:11:25.000 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 13:11:25.000 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 13:11:25.001 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.002 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.002 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.033 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 13:11:25.033 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 13:11:25.034 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 13:11:25.034 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 13:11:25.036 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.036 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.038 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.046 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 13:11:25.047 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 13:11:25.047 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 13:11:25.048 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 13:11:25.050 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.050 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.050 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.061 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 13:11:25.062 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 13:11:25.062 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 13:11:25.063 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 13:11:25.064 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.064 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.065 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.125 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 13:11:25.126 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 13:11:25.127 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 13:11:25.127 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 13:11:25.129 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.129 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.129 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.149 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 13:11:25.150 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 13:11:25.150 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 13:11:25.151 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 13:11:25.152 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.152 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.153 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.173 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 13:11:25.174 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 13:11:25.175 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 13:11:25.176 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 13:11:25.178 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.178 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.178 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.195 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 13:11:25.196 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:LEARNMSA_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 13:11:25.197 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 13:11:25.198 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 13:11:25.199 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.199 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.200 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.219 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 13:11:25.221 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 13:11:25.222 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 13:11:25.223 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 13:11:25.225 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.226 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.227 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.246 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 13:11:25.247 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 13:11:25.247 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 13:11:25.247 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 13:11:25.249 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.249 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.250 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.269 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 13:11:25.270 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 13:11:25.272 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 13:11:25.273 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 13:11:25.273 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 13:11:25.277 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.278 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.279 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.310 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 13:11:25.311 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 13:11:25.311 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 13:11:25.312 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 13:11:25.313 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.313 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.313 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.330 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 13:11:25.331 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 13:11:25.332 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 13:11:25.332 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 13:11:25.332 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 13:11:25.333 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.334 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.334 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.351 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 13:11:25.351 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 13:11:25.352 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 13:11:25.352 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 13:11:25.354 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.354 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.356 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.377 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 13:11:25.378 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 13:11:25.378 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 13:11:25.379 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 13:11:25.379 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 13:11:25.380 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 13:11:25.381 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.381 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.381 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.399 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 13:11:25.399 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MTMALIGN_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 13:11:25.399 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 13:11:25.400 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 13:11:25.402 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.402 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.402 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.425 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 13:11:25.426 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 13:11:25.427 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 13:11:25.427 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 13:11:25.428 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 13:11:25.429 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.429 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.430 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.451 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 13:11:25.452 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 13:11:25.453 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONSENSUS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 13:11:25.454 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 13:11:25.456 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 13:11:25.458 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.458 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.459 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.478 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 13:11:25.478 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PIGZ_COMPRESS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 13:11:25.479 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 13:11:25.480 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 13:11:25.481 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.481 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.481 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.512 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 13:11:25.513 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 13:11:25.513 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 13:11:25.514 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 13:11:25.514 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 13:11:25.515 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.515 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.516 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.534 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 13:11:25.535 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 13:11:25.535 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 13:11:25.536 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 13:11:25.536 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 13:11:25.539 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.539 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.540 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.548 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 13:11:25.549 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 13:11:25.549 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 13:11:25.550 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 13:11:25.550 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 13:11:25.551 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.551 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.552 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.567 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 13:11:25.568 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 13:11:25.568 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 13:11:25.569 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 13:11:25.569 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 13:11:25.572 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.572 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.573 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.582 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 13:11:25.583 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALC_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 13:11:25.584 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 13:11:25.584 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 13:11:25.585 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.585 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.586 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.600 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 13:11:25.601 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 13:11:25.601 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 13:11:25.602 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 13:11:25.602 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 13:11:25.605 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.605 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.606 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.627 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 13:11:25.628 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 13:11:25.628 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 13:11:25.628 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 13:11:25.630 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.630 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.631 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.647 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 13:11:25.648 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PARSE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 13:11:25.648 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 13:11:25.649 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 13:11:25.650 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.650 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.651 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.679 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 13:11:25.680 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 13:11:25.681 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 13:11:25.681 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 13:11:25.681 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 13:11:25.683 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.683 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.684 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.702 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 13:11:25.702 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 13:11:25.703 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 13:11:25.704 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 13:11:25.707 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.707 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.709 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.743 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 13:11:25.745 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 13:11:25.746 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 13:11:25.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 13:11:25.748 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 13:11:25.751 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.752 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.753 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.826 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 13:11:25.827 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 13:11:25.828 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 13:11:25.829 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 13:11:25.830 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 13:11:25.832 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.832 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.833 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.868 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 13:11:25.869 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 13:11:25.870 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 13:11:25.871 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 13:11:25.872 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 13:11:25.874 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.874 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.875 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.893 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 13:11:25.894 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PREPARE_SHINY` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 13:11:25.895 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 13:11:25.896 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 13:11:25.898 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.898 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.899 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.938 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 13:11:25.940 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 13:11:25.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 13:11:25.944 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.944 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.945 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB': maxForks=0; fair=false; array=0
+Oct-17 13:11:25.976 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 13:11:25.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:FOLDMASON_MSA2LDDTREPORT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 13:11:25.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 13:11:25.978 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 13:11:25.981 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:25.982 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:25.982 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT': maxForks=0; fair=false; array=0
+Oct-17 13:11:26.084 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 13:11:26.084 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 13:11:26.085 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 13:11:26.086 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:26.086 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:26.087 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC': maxForks=0; fair=false; array=0
+Oct-17 13:11:26.116 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 13:11:26.117 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MULTIQC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 13:11:26.118 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 13:11:26.118 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 13:11:26.120 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
+Oct-17 13:11:26.121 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
+Oct-17 13:11:26.122 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC': maxForks=0; fair=false; array=0
+Oct-17 13:11:26.147 [main] DEBUG nextflow.Session - Config process names validation disabled as requested
+Oct-17 13:11:26.150 [main] DEBUG nextflow.Session - Igniting dataflow network (90)
+Oct-17 13:11:26.151 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
+Oct-17 13:11:26.152 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
+Oct-17 13:11:26.154 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
+Oct-17 13:11:26.154 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
+Oct-17 13:11:26.155 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
+Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
+Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
+Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
+Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
+Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
+Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
+Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
+Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
+Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
+Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
+Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
+Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
+Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
+Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
+Oct-17 13:11:26.173 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
+Oct-17 13:11:26.173 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
+Oct-17 13:11:26.174 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
+Oct-17 13:11:26.181 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
+Oct-17 13:11:26.182 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
+Oct-17 13:11:26.183 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files:
+  Script_8251928f53ed1e0e: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/multiqc/main.nf
+  Script_ec6d7c00dbe116f1: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/guidetree/main.nf
+  Script_57af96f2e16e9c7d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_multiqc/main.nf
+  Script_63ce457e8ec7f8af: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/upp/align/main.nf
+  Script_524f120a05221479: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/kalign/align/main.nf
+  Script_09ffe02c0c021b08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/irmsd/main.nf
+  Script_8425f66c1fadad9f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/regressive/main.nf
+  Script_5729c854db3bca08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/align/main.nf
+  Script_48b407151e6b24a5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/easymsa/main.nf
+  Script_bad8f411f3f6ffa1: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+  Script_7d22c6ec5ed4460e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/ALIGN/main.nf
+  Script_c4e65926ddf491aa: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/align/main.nf
+  Script_eda0c798b2c6de8e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/EVALUATE/main.nf
+  Script_fca9eae676f246fb: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/TEMPLATES/main.nf
+  Script_2a3123de5fac596c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/untar/main.nf
+  Script_941048245083b1e2: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/concat/main.nf
+  Script_e0e9c77b2ae8e9b3: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/pdbtofasta/main.nf
+  Script_e823de7f89fcdd71: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/STATS/main.nf
+  Script_f0051a4616b96900: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/tcs/main.nf
+  Script_0dd893b3b9df6f1f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/guidetree/main.nf
+  Script_328b81a9521dfef3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/learnmsa/align/main.nf
+  Script_45033c525735daa5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mtmalign/align/main.nf
+  Script_7b4cef2b5410f808: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/magus/align/main.nf
+  Script_6bd16897fec1d5bc: /home/luisasantus/Desktop/multiplesequencealign/main.nf
+  Script_6cb5b9c70ca32fe9: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/msa2lddtreport/main.nf
+  Script_08462a39a86bdf01: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/PREPROCESS/main.nf
+  Script_32fec9f5ca14d441: /home/luisasantus/Desktop/multiplesequencealign/workflows/multiplesequencealign.nf
+  Script_2388659803e1fbf6: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/align/main.nf
+  Script_4a2e0f0221aa895f: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/VISUALIZATION/main.nf
+  Script_5c4e8d4051efa81e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfcore_pipeline/main.nf
+  Script_c468d244616aec2a: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/COMPUTE_TREES/main.nf
+  Script_44d8335569596992: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/guidetree/main.nf
+  Script_a64a54a01f8015c7: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfschema_plugin/main.nf
+  Script_b93ee6233f5bb49c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/muscle5/super5/main.nf
+  Script_bca4a30519de91f7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/join/main.nf
+  Script_5eaf85488d283048: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/extractfrompdb/main.nf
+  Script_4f612cfd8c52e8cd: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nextflow_pipeline/main.nf
+  Script_71bf7e9900254bc9: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_seqstats/main.nf
+  Script_34076aff62594325: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/pigz/compress/main.nf
+  Script_e1b81db8f4ff2371: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_sim/main.nf
+  Script_2cabea47677e033a: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/create_template/main.nf
+  Script_fd6913e0285b949d: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/fastavalidator/main.nf
+  Script_6ce6839019cc82da: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_shiny/main.nf
+  Script_fb9cf57a2c68281a: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/consensus/main.nf
+  Script_35f6720269e842a7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/seqreformat/main.nf
+  Script_33c0168aace67863: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_gaps/main.nf
+  Script_008f1bb55a32fd55: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/createdb/main.nf
+  Script_9621fcdbdfd33417: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/extract_plddt/main.nf
+  Script_f3636f12629b7eb3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/alncompare/main.nf
+  Script_77d1ee0a0ad8268f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/align/main.nf
+  Script_417dd392a2b3179d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_irmsd/main.nf
+Oct-17 13:11:26.184 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination 
+Oct-17 13:11:26.184 [main] DEBUG nextflow.Session - Session await
+Oct-17 13:11:26.328 [Actor Thread 16] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.005 s; external sort time: 0.021 s; total time: 0.026 s
+Oct-17 13:11:26.328 [Actor Thread 6] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.002 s; external sort time: 0.023 s; total time: 0.025 s
+Oct-17 13:11:26.336 [Actor Thread 16] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/collect-file/796cc3eb08e6a1f3a00b04ef75acf884
+Oct-17 13:11:26.345 [Actor Thread 6] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/collect-file/1275d947742d982ce3088165cec78d64
+Oct-17 13:11:26.348 [Actor Thread 16] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-7704330683585502497
+Oct-17 13:11:26.348 [Actor Thread 6] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-4805896981161071977
+Oct-17 13:11:26.568 [FileTransfer-1] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/stage-c4db47c6-94b9-4adc-a834-3ba6f1a223b2/4d/9a2723635312269cfd195bd99b5654/setoxin-ref.fa
+Oct-17 13:11:26.569 [FileTransfer-2] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/stage-c4db47c6-94b9-4adc-a834-3ba6f1a223b2/67/a612175c7e4379665e0aed98b7f6ac/toxin-ref.fa
+Oct-17 13:11:26.756 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:26.759 [Task submitter] INFO  nextflow.Session - [1a/3734fe] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)
+Oct-17 13:11:26.778 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:26.779 [Task submitter] INFO  nextflow.Session - [64/bf2fea] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)
+Oct-17 13:11:26.787 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:26.789 [Task submitter] INFO  nextflow.Session - [16/eeacd9] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)
+Oct-17 13:11:26.796 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:26.802 [Task submitter] INFO  nextflow.Session - [98/b351d4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)
+Oct-17 13:11:26.917 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/1a/3734fe7cb746984e14db5325e1e2cf]
+Oct-17 13:11:26.918 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
+Oct-17 13:11:26.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/64/bf2fea1ef78d0d849e20d5acbaa09b]
+Oct-17 13:11:26.931 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:26.933 [Task submitter] INFO  nextflow.Session - [61/77c7ec] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)
+Oct-17 13:11:26.952 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:26.954 [Task submitter] INFO  nextflow.Session - [a2/0aa64d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)
+Oct-17 13:11:26.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/16/eeacd9ed5ba4f1b9e421d0c84f9756]
+Oct-17 13:11:26.979 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:26.981 [Task submitter] INFO  nextflow.Session - [fc/25e69c] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)
+Oct-17 13:11:26.999 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/98/b351d445264b97ba38fbfee926d9fd]
+Oct-17 13:11:27.024 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:27.039 [Task submitter] INFO  nextflow.Session - [25/4b9570] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)
+Oct-17 13:11:27.050 [TaskFinalizer-4] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
+Oct-17 13:11:27.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa]
+Oct-17 13:11:27.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/fc/25e69c7b3302e5effdb816ebce706a]
+Oct-17 13:11:27.228 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:27.228 [Task submitter] INFO  nextflow.Session - [c6/a8f9fe] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)
+Oct-17 13:11:27.254 [TaskFinalizer-5] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
+Oct-17 13:11:27.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:27.309 [Task submitter] INFO  nextflow.Session - [0d/2dee58] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)
+Oct-17 13:11:27.410 [TaskFinalizer-5] ERROR nextflow.processor.TaskProcessor - Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)'
+
+Caused by:
+  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
+
+
+Command executed:
+
+  export TEMP='./'
+  t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > "toxin-ref.txt"
+  
+  cat <<-END_VERSIONS > versions.yml
+  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM":
+      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
+  END_VERSIONS
+
+Command exit status:
+  127
+
+Command output:
+  (empty)
+
+Command error:
+  .command.sh: line 3: t_coffee: command not found
+
+Work dir:
+  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
+
+Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
+Oct-17 13:11:27.439 [TaskFinalizer-6] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/fc/25e69c7b3302e5effdb816ebce706a
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)` terminated with an error exit status (127)
+Oct-17 13:11:27.483 [TaskFinalizer-5] WARN  n.c.DataContainers.TDPDataMatrix - No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 13:11:27.486 [TaskFinalizer-5] WARN  n.co2footprint.utils.HelperFunctions - Missing trace value '%cpu' for task 6, using default: 100% for all 2 cores.
+Oct-17 13:11:27.488 [TaskFinalizer-6] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 13:11:27.518 [TaskFinalizer-6] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 2, using default: 100% for all 2 cores.
+Oct-17 13:11:27.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/c6/a8f9fe0db551dd7400542c3a5293b4]
+Oct-17 13:11:27.545 [TaskFinalizer-7] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/c6/a8f9fe0db551dd7400542c3a5293b4
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)` terminated with an error exit status (127)
+Oct-17 13:11:27.551 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
+Oct-17 13:11:27.559 [Task submitter] INFO  nextflow.Session - [0e/918212] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)
+Oct-17 13:11:27.568 [TaskFinalizer-2] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<0:1>
+Oct-17 13:11:27.570 [TaskFinalizer-1] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<0:1>
+Oct-17 13:11:27.578 [TaskFinalizer-7] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 13:11:27.587 [TaskFinalizer-7] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 9, using default: 100% for all 2 cores.
+Oct-17 13:11:27.595 [TaskFinalizer-5] INFO  nextflow.Session - Execution cancelled -- Finishing pending tasks before exit
+Oct-17 13:11:27.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0d/2dee580c69f9f948c93296909259ad]
+Oct-17 13:11:27.607 [TaskFinalizer-5] ERROR nextflow.Nextflow - Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
+Oct-17 13:11:27.609 [main] DEBUG nextflow.Session - Session await > all processes finished
+Oct-17 13:11:27.612 [TaskFinalizer-8] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0d/2dee580c69f9f948c93296909259ad
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)` terminated with an error exit status (127)
+Oct-17 13:11:27.625 [Actor Thread 24] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL; work-dir=null
+  error [java.lang.InterruptedException]: java.lang.InterruptedException
+Oct-17 13:11:27.635 [Actor Thread 30] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 3; slices: 1; internal sort time: 0.008 s; external sort time: 0.003 s; total time: 0.011 s
+Oct-17 13:11:27.640 [TaskFinalizer-8] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 13:11:27.642 [TaskFinalizer-8] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 10, using default: 100% for all 2 cores.
+Oct-17 13:11:27.643 [Actor Thread 30] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/collect-file/4eca2d41a3ec783a283f72df1541ef76
+Oct-17 13:11:27.651 [Actor Thread 30] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-10490535290097349557
+Oct-17 13:11:27.757 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0e/9182126c1bc81b5e270fa1733618ae]
+Oct-17 13:11:27.762 [TaskFinalizer-9] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
+  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0e/9182126c1bc81b5e270fa1733618ae
+  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)` terminated with an error exit status (127)
+Oct-17 13:11:27.771 [TaskFinalizer-9] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
+	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
+Oct-17 13:11:27.774 [TaskFinalizer-9] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 12, using default: 100% for all 2 cores.
+Oct-17 13:11:28.226 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/25/4b9570a14b102c5bc2b9c48f35ebc8]
+Oct-17 13:11:28.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/a2/0aa64d4b5c61ea0a7db15ed5960777]
+Oct-17 13:11:28.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop
+Oct-17 13:11:28.327 [main] DEBUG nextflow.Session - Session await > all barriers passed
+Oct-17 13:11:28.345 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'TaskFinalizer' shutdown completed (hard=false)
+Oct-17 13:11:28.346 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'PublishDir' shutdown completed (hard=false)
+Oct-17 13:11:28.349 [main] INFO  nextflow.Nextflow - -[nf-core/multiplesequencealign] Pipeline completed with errors-
+Oct-17 13:11:28.352 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=6; failedCount=5; ignoredCount=0; cachedCount=0; pendingCount=1; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=4.6s; failedDuration=2.1s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=8; peakCpus=16; peakMemory=24 GB; ]
+Oct-17 13:11:28.353 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file
+Oct-17 13:11:28.356 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow completed -- rendering & saving files
+Oct-17 13:11:28.583 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
+Oct-17 13:11:28.603 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-tower@1.11.4'
+Oct-17 13:11:28.603 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-tower
+Oct-17 13:11:28.603 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-prov@1.2.2'
+Oct-17 13:11:28.603 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-prov
+Oct-17 13:11:28.603 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-co2footprint@1.0.0'
+Oct-17 13:11:28.603 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-co2footprint
+Oct-17 13:11:28.604 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-schema@2.5.1'
+Oct-17 13:11:28.604 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-schema
+Oct-17 13:11:28.607 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'FileTransfer' shutdown completed (hard=false)
+Oct-17 13:11:28.609 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json
new file mode 100644
index 00000000..75a73ddd
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json
@@ -0,0 +1 @@
+{"input":"https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv","tools":"https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv","outdir":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output"}
\ No newline at end of file
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err
new file mode 100644
index 00000000..88fed570
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err
@@ -0,0 +1 @@
+Nextflow 25.04.8 is available - Please consider updating your version to it(B
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out
new file mode 100644
index 00000000..303b6227
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out
@@ -0,0 +1,29 @@
+ERROR - [nf-co2footprint] Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)'
+
+Caused by:
+  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
+
+
+Command executed:
+
+  export TEMP='./'
+  t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > "toxin-ref.txt"
+  
+  cat <<-END_VERSIONS > versions.yml
+  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM":
+      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
+  END_VERSIONS
+
+Command exit status:
+  127
+
+Command output:
+  (empty)
+
+Command error:
+  .command.sh: line 3: t_coffee: command not found
+
+Work dir:
+  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
+
+Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command lineERROR - [nf-co2footprint] Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
new file mode 100644
index 00000000..6af152ff
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
@@ -0,0 +1,12 @@
+task_id	hash	native_id	name	status	exit	realtime	%cpu	rss	peak_rss	vmem	peak_vmem	rchar	wchar	cpus	start
+3	98/b351d4	1935048	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	COMPLETED	0	13ms	21.6%	0	0	0	0	128.7 KB	838 B	2	2025-10-17 13:11:26.839
+8	16/eeacd9	1935020	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	COMPLETED	0	54ms	76.2%	3.3 MB	3.3 MB	11.8 MB	11.8 MB	130.9 KB	2.7 KB	2	2025-10-17 13:11:26.836
+2	fc/25e69c	1935468	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	FAILED	127	188ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.001
+6	61/77c7ec	1935385	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	FAILED	127	197ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:26.977
+9	c6/a8f9fe	1935639	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)	FAILED	127	214ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.314
+4	64/bf2fea	1935008	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	COMPLETED	0	19ms	100.0%	0	0	0	0	158.5 KB	1.2 KB	2	2025-10-17 13:11:26.832
+5	1a/3734fe	1934991	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	COMPLETED	0	24ms	43.2%	0	0	0	0	158.5 KB	1.2 KB	2	2025-10-17 13:11:26.821
+10	0d/2dee58	1935670	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)	FAILED	127	281ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.316
+12	0e/918212	1935777	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	FAILED	127	157ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.599
+1	25/4b9570	1935539	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	COMPLETED	0	1s	85.2%	42 MB	42 MB	385.8 MB	385.8 MB	11.3 MB	632 B	2	2025-10-17 13:11:27.210
+7	a2/0aa64d	1935429	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	COMPLETED	0	1.2s	77.3%	20.6 MB	20.6 MB	361.4 MB	361.5 MB	11.3 MB	891 B	2	2025-10-17 13:11:26.980
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
new file mode 100644
index 00000000..6cb59bff
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
@@ -0,0 +1,1364 @@
+<!DOCTYPE html>
+<!--
+  ~ Copyright 2013-2023, Seqera Labs
+  ~
+  ~ Licensed under the Apache License, Version 2.0 (the "License");
+  ~ you may not use this file except in compliance with the License.
+  ~ You may obtain a copy of the License at
+  ~
+  ~     http://www.apache.org/licenses/LICENSE-2.0
+  ~
+  ~ Unless required by applicable law or agreed to in writing, software
+  ~ distributed under the License is distributed on an "AS IS" BASIS,
+  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+  ~ See the License for the specific language governing permissions and
+  ~ limitations under the License.
+  -->
+<html lang="en">
+<head>
+  <meta charset="UTF-8">
+  <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+  <meta name="description" content="Nextflow workflow report for run id [furious_sax]">
+  <meta name="author" content="Sabrina Krakau">
+  <link rel="icon" type="image/png" href="https://www.nextflow.io/img/favicon.png" />
+  <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
+
+  <title>[furious_sax] Nextflow CO₂e Footprint Report</title>
+
+  <style>
+  /*!
+ * Bootstrap v4.0.0-beta.2 (https://getbootstrap.com)
+ * Copyright 2011-2017 The Bootstrap Authors
+ * Copyright 2011-2017 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */:root{--blue:#007bff;--indigo:#6610f2;--purple:#6f42c1;--pink:#e83e8c;--red:#dc3545;--orange:#fd7e14;--yellow:#ffc107;--green:#28a745;--teal:#20c997;--cyan:#17a2b8;--white:#fff;--gray:#868e96;--gray-dark:#343a40;--primary:#007bff;--secondary:#868e96;--success:#28a745;--info:#17a2b8;--warning:#ffc107;--danger:#dc3545;--light:#f8f9fa;--dark:#343a40;--breakpoint-xs:0;--breakpoint-sm:576px;--breakpoint-md:768px;--breakpoint-lg:992px;--breakpoint-xl:1200px;--font-family-sans-serif:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Helvetica Neue",Arial,sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol";--font-family-monospace:"SFMono-Regular",Menlo,Monaco,Consolas,"Liberation Mono","Courier New",monospace}@media print{*,::after,::before{text-shadow:none!important;box-shadow:none!important}a,a:visited{text-decoration:underline}abbr[title]::after{content:" (" attr(title) ")"}pre{white-space:pre-wrap!important}blockquote,pre{border:1px solid 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div.dataTables_paginate{margin:0;white-space:nowrap;text-align:right}div.dataTables_wrapper div.dataTables_paginate ul.pagination{margin:2px 0;white-space:nowrap;justify-content:flex-end}div.dataTables_wrapper div.dataTables_processing{position:absolute;top:50%;left:50%;width:200px;margin-left:-100px;margin-top:-26px;text-align:center;padding:1em 0}table.dataTable thead>tr>th.sorting_asc,table.dataTable thead>tr>th.sorting_desc,table.dataTable thead>tr>th.sorting,table.dataTable thead>tr>td.sorting_asc,table.dataTable thead>tr>td.sorting_desc,table.dataTable thead>tr>td.sorting{padding-right:30px}table.dataTable thead>tr>th:active,table.dataTable thead>tr>td:active{outline:none}table.dataTable thead .sorting,table.dataTable thead .sorting_asc,table.dataTable thead .sorting_desc,table.dataTable thead .sorting_asc_disabled,table.dataTable thead .sorting_desc_disabled{cursor:pointer;position:relative}table.dataTable thead .sorting:before,table.dataTable thead .sorting:after,table.dataTable thead .sorting_asc:before,table.dataTable thead .sorting_asc:after,table.dataTable thead .sorting_desc:before,table.dataTable thead .sorting_desc:after,table.dataTable thead .sorting_asc_disabled:before,table.dataTable thead .sorting_asc_disabled:after,table.dataTable thead .sorting_desc_disabled:before,table.dataTable thead .sorting_desc_disabled:after{position:absolute;bottom:0.9em;display:block;opacity:0.3}table.dataTable thead .sorting:before,table.dataTable thead .sorting_asc:before,table.dataTable thead .sorting_desc:before,table.dataTable thead .sorting_asc_disabled:before,table.dataTable thead .sorting_desc_disabled:before{right:1em;content:"\2191"}table.dataTable thead .sorting:after,table.dataTable thead .sorting_asc:after,table.dataTable thead .sorting_desc:after,table.dataTable thead .sorting_asc_disabled:after,table.dataTable thead .sorting_desc_disabled:after{right:0.5em;content:"\2193"}table.dataTable thead .sorting_asc:before,table.dataTable thead .sorting_desc:after{opacity:1}table.dataTable thead .sorting_asc_disabled:before,table.dataTable thead .sorting_desc_disabled:after{opacity:0}div.dataTables_scrollHead table.dataTable{margin-bottom:0 !important}div.dataTables_scrollBody table{border-top:none;margin-top:0 !important;margin-bottom:0 !important}div.dataTables_scrollBody table thead .sorting:after,div.dataTables_scrollBody table thead .sorting_asc:after,div.dataTables_scrollBody table thead .sorting_desc:after{display:none}div.dataTables_scrollBody table tbody tr:first-child th,div.dataTables_scrollBody table tbody tr:first-child td{border-top:none}div.dataTables_scrollFoot>.dataTables_scrollFootInner{box-sizing:content-box}div.dataTables_scrollFoot>.dataTables_scrollFootInner>table{margin-top:0 !important;border-top:none}@media screen and (max-width: 767px){div.dataTables_wrapper div.dataTables_length,div.dataTables_wrapper div.dataTables_filter,div.dataTables_wrapper div.dataTables_info,div.dataTables_wrapper div.dataTables_paginate{text-align:center}}table.dataTable.table-sm>thead>tr>th{padding-right:20px}table.dataTable.table-sm .sorting:before,table.dataTable.table-sm .sorting_asc:before,table.dataTable.table-sm .sorting_desc:before{top:5px;right:0.85em}table.dataTable.table-sm .sorting:after,table.dataTable.table-sm .sorting_asc:after,table.dataTable.table-sm .sorting_desc:after{top:5px}table.table-bordered.dataTable th,table.table-bordered.dataTable td{border-left-width:0}table.table-bordered.dataTable th:last-child,table.table-bordered.dataTable th:last-child,table.table-bordered.dataTable td:last-child,table.table-bordered.dataTable td:last-child{border-right-width:0}table.table-bordered.dataTable tbody th,table.table-bordered.dataTable tbody td{border-bottom-width:0}div.dataTables_scrollHead table.table-bordered{border-bottom-width:0}div.table-responsive>div.dataTables_wrapper>div.row{margin:0}div.table-responsive>div.dataTables_wrapper>div.row>div[class^="col-"]:first-child{padding-left:0}div.table-responsive>div.dataTables_wrapper>div.row>div[class^="col-"]:last-child{padding-right:0}
+
+
+@keyframes dtb-spinner{100%{transform:rotate(360deg)}}@-o-keyframes dtb-spinner{100%{-o-transform:rotate(360deg);transform:rotate(360deg)}}@-ms-keyframes dtb-spinner{100%{-ms-transform:rotate(360deg);transform:rotate(360deg)}}@-webkit-keyframes dtb-spinner{100%{-webkit-transform:rotate(360deg);transform:rotate(360deg)}}@-moz-keyframes dtb-spinner{100%{-moz-transform:rotate(360deg);transform:rotate(360deg)}}div.dt-button-info{position:fixed;top:50%;left:50%;width:400px;margin-top:-100px;margin-left:-200px;background-color:white;border:2px solid #111;box-shadow:3px 3px 8px rgba(0,0,0,0.3);border-radius:3px;text-align:center;z-index:21}div.dt-button-info h2{padding:0.5em;margin:0;font-weight:normal;border-bottom:1px solid #ddd;background-color:#f3f3f3}div.dt-button-info>div{padding:1em}ul.dt-button-collection.dropdown-menu{display:block;z-index:2002;-webkit-column-gap:8px;-moz-column-gap:8px;-ms-column-gap:8px;-o-column-gap:8px;column-gap:8px}ul.dt-button-collection.dropdown-menu.fixed{position:fixed;top:50%;left:50%;margin-left:-75px;border-radius:0}ul.dt-button-collection.dropdown-menu.fixed.two-column{margin-left:-150px}ul.dt-button-collection.dropdown-menu.fixed.three-column{margin-left:-225px}ul.dt-button-collection.dropdown-menu.fixed.four-column{margin-left:-300px}ul.dt-button-collection.dropdown-menu>*{-webkit-column-break-inside:avoid;break-inside:avoid}ul.dt-button-collection.dropdown-menu.two-column{width:300px;padding-bottom:1px;-webkit-column-count:2;-moz-column-count:2;-ms-column-count:2;-o-column-count:2;column-count:2}ul.dt-button-collection.dropdown-menu.three-column{width:450px;padding-bottom:1px;-webkit-column-count:3;-moz-column-count:3;-ms-column-count:3;-o-column-count:3;column-count:3}ul.dt-button-collection.dropdown-menu.four-column{width:600px;padding-bottom:1px;-webkit-column-count:4;-moz-column-count:4;-ms-column-count:4;-o-column-count:4;column-count:4}ul.dt-button-collection{-webkit-column-gap:8px;-moz-column-gap:8px;-ms-column-gap:8px;-o-column-gap:8px;column-gap:8px}ul.dt-button-collection.fixed{position:fixed;top:50%;left:50%;margin-left:-75px;border-radius:0}ul.dt-button-collection.fixed.two-column{margin-left:-150px}ul.dt-button-collection.fixed.three-column{margin-left:-225px}ul.dt-button-collection.fixed.four-column{margin-left:-300px}ul.dt-button-collection>*{-webkit-column-break-inside:avoid;break-inside:avoid}ul.dt-button-collection.two-column{width:300px;padding-bottom:1px;-webkit-column-count:2;-moz-column-count:2;-ms-column-count:2;-o-column-count:2;column-count:2}ul.dt-button-collection.three-column{width:450px;padding-bottom:1px;-webkit-column-count:3;-moz-column-count:3;-ms-column-count:3;-o-column-count:3;column-count:3}ul.dt-button-collection.four-column{width:600px;padding-bottom:1px;-webkit-column-count:4;-moz-column-count:4;-ms-column-count:4;-o-column-count:4;column-count:4}ul.dt-button-collection.fixed{max-width:none}ul.dt-button-collection.fixed:before,ul.dt-button-collection.fixed:after{display:none}div.dt-button-background{position:fixed;top:0;left:0;width:100%;height:100%;z-index:999}@media screen and (max-width: 767px){div.dt-buttons{float:none;width:100%;text-align:center;margin-bottom:0.5em}div.dt-buttons a.btn{float:none}}div.dt-buttons button.btn.processing,div.dt-buttons div.btn.processing,div.dt-buttons a.btn.processing{color:rgba(0,0,0,0.2)}div.dt-buttons button.btn.processing:after,div.dt-buttons div.btn.processing:after,div.dt-buttons a.btn.processing:after{position:absolute;top:50%;left:50%;width:16px;height:16px;margin:-8px 0 0 -8px;box-sizing:border-box;display:block;content:' ';border:2px solid #282828;border-radius:50%;border-left-color:transparent;border-right-color:transparent;animation:dtb-spinner 1500ms infinite linear;-o-animation:dtb-spinner 1500ms infinite linear;-ms-animation:dtb-spinner 1500ms infinite linear;-webkit-animation:dtb-spinner 1500ms infinite linear;-moz-animation:dtb-spinner 1500ms infinite linear}
+
+
+table.DTCR_clonedTable.dataTable{position:absolute !important;background-color:rgba(255,255,255,0.7);z-index:202}div.DTCR_pointer{width:1px;background-color:#0275d8;z-index:201}
+
+
+
+
+
+
+/*
+ * Nextflow CO2e Report Custom CSS
+ */
+
+/* General page style */
+body {
+  padding-top: 56px;
+}
+
+/* Top bar */
+.navbar {
+  box-shadow: 0 .5rem 1rem #00000011;
+}
+
+.navbar-brand img {
+  width: 20px;
+  height: 20px;
+  margin: 0 10px 5px 0;
+}
+
+/* Top part until 'CO2e Footprint Measures' */
+.jumbotron {
+  background-repeat: no-repeat;
+  background-size: cover;
+  background-image:
+    linear-gradient(180deg, rgba(255,255,255,0) 0%, rgba(255,255,255,0.5) 10%, rgba(255,255,255,1) 50%),
+    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')
+}
+.jumbotron .container {
+  background-color: rgba(255,255,255,0.8);
+  border-radius: 0.3rem;
+  padding: 1rem 2rem;
+}
+
+.card-wrap {
+  gap: 1.5rem;
+  margin-left: -0.75rem;
+  margin-right: -0.75rem;
+}
+
+.metric-card {
+  width: 18%;
+  text-align: center;
+  flex: 1 1 200px;
+  min-width: 200px;
+}
+
+.metric-card svg {
+  margin: 0.5rem auto;
+  height:50px;
+}
+.metric {
+  font-size: 2rem;
+  font-weight: 300;
+  line-height: 1.2;
+}
+.metric-title {
+  font-size: 1rem;
+  margin-bottom: 0.5rem;
+  font-weight: 500;
+}
+
+pre {
+  margin-bottom: 0;
+}
+pre.nfcommand {
+  white-space: pre-wrap;
+  border: 1px solid #ccc;
+  padding: 10px 15px;
+  border-radius: 5px;
+  background-color: #F0F2F4;
+  font-size: 0.8rem;
+}
+
+table td {
+  max-width: 200px;
+  overflow-x: auto;
+}
+
+.script_block.short {
+  max-height: 30px;
+  overflow-y: hidden;
+  cursor: pointer;
+}
+
+footer {
+  background-color: #ededed;
+  margin: 50px 0 0;
+  padding: 20px 0;
+  border-top: 1px solid #cccccc;
+  color: #999999;
+  font-size: 0.8rem;
+}
+footer a {
+  color: #999999;
+  text-decoration: underline;
+}
+
+#nf-form-humanreadable {
+  margin-bottom: 1rem;
+}
+
+#tasks_table_filter {
+  display: flex;
+}
+#tasks_table_filter>.btn-group {
+  vertical-align: top;
+  margin-right: 1rem;
+  height: calc(1.8125rem + 3px);
+}
+#tasks_table_filter .buttons-colvisGroup {
+  padding: 0.2rem 0.75rem;
+}
+#tasks_table_filter .dt-buttons::before {
+  content: "Filter: ";
+  padding: 0.2rem 0.5rem;
+  font-size: 1.1rem;
+}
+
+.tab-pane {
+  display: block !important;
+  position: relative !important;
+  visibility: hidden;
+  overflow: hidden;
+  width: 100%;
+  height: 0;
+  z-index: 0;
+  opacity: 0;
+  transition: visibility 0s, opacity 0.3s ease-in-out;
+}
+
+.tab-pane.active {
+  visibility: visible;
+  overflow: visible;
+  height: auto;
+  z-index: 1;
+  opacity: 1;
+}
+
+.expandable-label {
+  padding: 6px 12px;
+  border-radius: 8px;
+  border: 2px solid #badbcc;
+  background-color: #d1e7dd;
+  font-weight: bold;
+  color: #0f5132;
+  display: inline-block;
+}
+
+summary {
+  cursor: pointer;
+}
+  </style>
+
+</head>
+<body>
+  <nav id="nf-report-navbar" class="navbar navbar-expand-md navbar-light fixed-top bg-white">
+    <div class="container">
+      <a class="navbar-brand" href="#">
+        <img src="data:image/png;base64,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" alt="Nextflow logo (green lanes that are crossing in the middle)">
+      Nextflow CO<sub>2</sub>e Report
+    </a>
+    <button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation">
+      <span class="navbar-toggler-icon"></span>
+    </button>
+    <div class="navbar-collapse" id="navbarCollapse">
+      <ul class="navbar-nav mr-auto">
+        <li class="nav-item"><a class="nav-link" href="#">Summary</a></li>
+        <li class="nav-item"><a class="nav-link" href="#resources">Resources</a></li>
+        <li class="nav-item"><a class="nav-link" href="#tasks">Tasks</a></li>
+      </ul>
+    </div>
+    <code class="d-none d-md-inline navbar-text">
+        [furious_sax]
+    </code>
+    </div>
+  </nav>
+
+  <div class="jumbotron mb-0">
+    <div class="container">
+
+      <h1 class="display-3">Nextflow CO<sub>2</sub>e Footprint Report</h1>
+      <h2 class="text-muted mb-4"><samp>[furious_sax]</samp> </h2>
+
+      
+          <div class="alert alert-danger mb-4">
+              <h4>Workflow execution completed unsuccessfully!</h4>
+              <p>The exit status of the task that caused the workflow execution to fail was: <code>127</code>.</p>
+              <p>The full error message was:</p>
+              <pre>Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)'
+
+Caused by:
+  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
+
+
+Command executed:
+
+  export TEMP='./'
+  t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > "toxin-ref.txt"
+  
+  cat <<-END_VERSIONS > versions.yml
+  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM":
+      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
+  END_VERSIONS
+
+Command exit status:
+  127
+
+Command output:
+  (empty)
+
+Command error:
+  .command.sh: line 3: t_coffee: command not found
+
+Work dir:
+  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
+
+Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line</pre>
+          </div>
+      
+
+      <dl>
+        <dt>Run times</dt>
+        <dd>
+          <span id="workflow_start">17-Oct-2025 13:11:14</span> - <span id="workflow_complete">17-Oct-2025 13:11:28</span>
+          (<span id="completed_fromnow"></span>duration: <strong>13.6s</strong>)
+        </dd>
+
+        <dt>Nextflow command</dt>
+        <dd><pre class="nfcommand"><code>nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json -ansi-log false -profile test -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work</code></pre></dd>
+      </dl>
+
+      <dl>
+        <dt>Nextflow version</dt>
+        <dd>version 25.04.6, build 5954 (01-07-2025 11:27 UTC)</dd>
+
+        <dt>nf-co2footprint plugin version</dt>
+        <dd>version 1.0.0</dd>
+      </dl>
+
+      <h3 class="mt-5">Total CO<sub>2</sub>e Footprint Measures</h3>
+      <div class="card-wrap d-flex flex-wrap mt-4 mb-5">
+        <div class="metric-card card p-1">
+          <span class="metric">5.65 mg</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
+          <span class="metric-title">CO<sub>2</sub>e emissions</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">11.77 mWh</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
+          <span class="metric-title">Energy consumption</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">16.2s</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
+          <span class="metric-title">Tree sequestration time</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">3.23E-5</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
+          <span class="metric-title">km by car</span>
+        </div>
+
+        <div class="metric-card card p-1">
+          <span class="metric">1.13E-5 %</span>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
+          <span class="metric-title">Flight Paris - London</span>
+        </div>
+      </div>
+
+      <details class="mt-5">
+        <summary>
+          <span class="expandable-label">
+            Without cached tasks:
+          </span>
+        </summary>
+        <div class="card-wrap d-flex flex-wrap mt-4 mb-5" >
+          <div class="metric-card card p-1">
+            <span class="metric">5.65 mg</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
+            <span class="metric-title">CO<sub>2</sub>e emissions</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">11.77 mWh</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
+            <span class="metric-title">Energy consumption</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">16.2s</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
+            <span class="metric-title">Tree sequestration time</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">3.23E-5</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
+            <span class="metric-title">km by car</span>
+          </div>
+
+          <div class="metric-card card p-1">
+            <span class="metric">1.13E-5 %</span>
+            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
+            <span class="metric-title">Flight Paris - London</span>
+          </div>
+        </div>
+      </details>
+
+      
+
+    </div>
+  </div>
+
+  <div class="container">
+    <h2 id="resources" style="padding-top: 20px;" class="mb-3">CO<sub>2</sub>e Footprint Measures</h2>
+    <ul class="nav nav-tabs mb-3" id="co2eplot_tabs" role="tablist">
+      <li class="nav-item">
+        <a class="nav-link active" id="co2e-total-plot_tablink" data-toggle="tab" href="#co2e-total-plot_tabpanel" role="tab" aria-controls="co2e-total-plot_tabpanel" aria-expanded="false">
+          All tasks
+        </a>
+      </li>
+      <li class="nav-item">
+        <a class="nav-link" id="co2e-non-cached-plot_tablink" data-toggle="tab" href="#co2e-non-cached-plot_tabpanel" role="tab" aria-controls="co2e-non-cached-plot_tabpanel" aria-expanded="false">
+          Without cached tasks
+        </a>
+      </li>
+    </ul>
+    <div class="tab-content" id="co2eplot_tabcontent">
+      <div class="tab-pane fade show active" id="co2e-total-plot_tabpanel" role="tabpanel">
+        <div id="co2e-total-plot"></div>
+      </div>
+      <div class="tab-pane fade" id="co2e-non-cached-plot_tabpanel" role="tabpanel">
+        <div id="co2e-non-cached-plot"></div>
+      </div>
+    </div>
+    <p class="mt-3">The plot shows the distribution of CO<sub>2</sub>e emissions and corresponding energy consumptions for each workflow process. The values that are displayed when hovering over the plot refer to the CO<sub>2</sub>e emissions.</p>
+  </div>
+
+  <div class="container">
+    <h2 id="tasks" style="padding-top: 20px;">Tasks</h2>
+    <div id="tasks-present-table" class="mb-3">
+      <form class="form-inline" id="nf-form-humanreadable">
+        <label class="mr-sm-2" for="nf-table-humanreadable">Values shown as:</label>
+        <select class="custom-select mb-2 mr-sm-2 mb-sm-0" id="nf-table-humanreadable">
+          <option value="true">Human readable</option>
+          <option value="false">Raw values</option>
+        </select>
+      </form>
+    </div>
+    <div class="container-fluid">
+      <table class="table small table-striped" id="tasks_table"></table>
+    </div>
+    <div id="tasks-omitted-table">
+      (tasks table omitted because the dataset is too big)
+    </div>
+    <p class="mt-3">This table shows information about each task in the workflow. Use the search box on the right
+      to filter rows for specific values. Clicking headers will sort the table by that value and
+      scrolling side to side will reveal more columns.</p>
+  </div>
+
+  <div class="container my-5">
+    <div class="card shadow-sm">
+      <div class="card-body">
+        <h2 id="attribution-and-references" style="padding-top: 20px;">Data Attribution &amp; References</h2>
+        <ul class="pl-3 mb-0">
+          <li class="mb-3">
+            The calculation of these values is based on the carbon footprint computation method
+            developed in the
+            <a href="https://www.green-algorithms.org/" target="_blank" rel="noopener" style="color: #28a745">Green Algorithms</a> project.<br>
+            <span class="font-italic small">
+              Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
+              Adv. Sci. 2021, 2100707.
+              <a href="https://doi.org/10.1002/advs.202100707" target="_blank" rel="noopener">
+                https://doi.org/10.1002/advs.202100707
+              </a>
+            </span>
+          </li>
+          <li class="mb-3">
+            
+              The carbon intensity (CI) values used in the calculation originate from
+              <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">Electricity Maps</a>
+              under the
+              <a href="https://opendatacommons.org/licenses/odbl/1-0/" target="_blank" rel="noopener">Open Database License (ODbL)</a>.<br>
+              <span class="font-italic small">
+                Electricity Maps (2025). 2024 Yearly Carbon Intensity Data (Version January 27, 2025). Electricity Maps.
+                <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">
+                  https://www.electricitymaps.com
+                </a>
+              </span>
+            
+          </li>
+          <li class="mb-3">
+            The processors thermal design power (TDP) values used in the calculation originate from
+            <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">WikiChip</a>
+            under the
+            <a href="https://creativecommons.org/licenses/by-nc-sa/4.0/" target="_blank" rel="noopener">CC BY-NC-SA 4.0</a> license.<br>
+            <span class="font-italic small">
+              WikiChip LLC (2025). CPU Data including Thermal Design Power (TDP) (Version June 20, 2025).
+              WikiChip.
+              <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">
+                https://en.wikichip.org/wiki/WikiChip
+              </a>
+            </span>
+          </li>
+        </ul>
+      </div>
+    </div>
+  </div>
+
+  <div class="container">
+    <div id="options-table">
+      <h2 id="options" style="padding-top: 20px;">Options</h2>
+      <p class="mt-3 mb-3">This table shows the nf-co2footprint plugin options that were used to calculate the CO<sub>2</sub>e footprint measures.</p>
+    </div>
+    <div class="container-fluid">
+      <table class="table small table-striped" id="options_table"></table>
+    </div>
+  </div>
+
+  <footer>
+    <div class="container-fluid">
+      Generated by <a href="https://www.nextflow.io" target="_blank">Nextflow</a>, version 25.04.6
+    </div>
+  </footer>
+
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t.setAttribute('x-placement',p),U(t,{position:'absolute'}),o},gpuAcceleration:void 0}}},le});
+
+
+
+
+/*!
+  * Bootstrap v4.0.0-beta.2 (https://getbootstrap.com)
+  * Copyright 2011-2017 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors)
+  * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+  */
+var bootstrap=function(t,e,n){"use strict";function i(t,e){for(var n=0;n<e.length;n++){var i=e[n];i.enumerable=i.enumerable||!1,i.configurable=!0,"value"in i&&(i.writable=!0),Object.defineProperty(t,i.key,i)}}e=e&&e.hasOwnProperty("default")?e.default:e,n=n&&n.hasOwnProperty("default")?n.default:n;var s=function(){function t(t){return{}.toString.call(t).match(/\s([a-zA-Z]+)/)[1].toLowerCase()}function n(){return{bindType:r.end,delegateType:r.end,handle:function(t){if(e(t.target).is(this))return t.handleObj.handler.apply(this,arguments)}}}function i(){if(window.QUnit)return!1;var t=document.createElement("bootstrap");for(var e in o)if("undefined"!=typeof t.style[e])return{end:o[e]};return!1}function s(t){var n=this,i=!1;return e(this).one(a.TRANSITION_END,function(){i=!0}),setTimeout(function(){i||a.triggerTransitionEnd(n)},t),this}var r=!1,o={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd 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a=e.Event(l.SHOW);if(e(this._element).trigger(a),!a.isDefaultPrevented()){r&&(i._jQueryInterface.call(e(r),"hide"),o||e(r).data(n,null));var c=this._getDimension();e(this._element).removeClass(h.COLLAPSE).addClass(h.COLLAPSING),this._element.style[c]=0,this._triggerArray.length&&e(this._triggerArray).removeClass(h.COLLAPSED).attr("aria-expanded",!0),this.setTransitioning(!0);var d=function(){e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).addClass(h.SHOW),t._element.style[c]="",t.setTransitioning(!1),e(t._element).trigger(l.SHOWN)};if(s.supportsTransitionEnd()){var f="scroll"+(c[0].toUpperCase()+c.slice(1));e(this._element).one(s.TRANSITION_END,d).emulateTransitionEnd(600),this._element.style[c]=this._element[f]+"px"}else d()}}}},d.hide=function(){var t=this;if(!this._isTransitioning&&e(this._element).hasClass(h.SHOW)){var n=e.Event(l.HIDE);if(e(this._element).trigger(n),!n.isDefaultPrevented()){var i=this._getDimension();if(this._element.style[i]=this._element.getBoundingClientRect()[i]+"px",s.reflow(this._element),e(this._element).addClass(h.COLLAPSING).removeClass(h.COLLAPSE).removeClass(h.SHOW),this._triggerArray.length)for(var r=0;r<this._triggerArray.length;r++){var o=this._triggerArray[r],a=s.getSelectorFromElement(o);null!==a&&(e(a).hasClass(h.SHOW)||e(o).addClass(h.COLLAPSED).attr("aria-expanded",!1))}this.setTransitioning(!0);var c=function(){t.setTransitioning(!1),e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).trigger(l.HIDDEN)};this._element.style[i]="",s.supportsTransitionEnd()?e(this._element).one(s.TRANSITION_END,c).emulateTransitionEnd(600):c()}}},d.setTransitioning=function(t){this._isTransitioning=t},d.dispose=function(){e.removeData(this._element,n),this._config=null,this._parent=null,this._element=null,this._triggerArray=null,this._isTransitioning=null},d._getConfig=function(n){return 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t=a._getParentFromElement(this._element),i=e(this._menu).hasClass(c.SHOW);if(a._clearMenus(),!i){var s={relatedTarget:this._element},r=e.Event(h.SHOW,s);if(e(t).trigger(r),!r.isDefaultPrevented()){var o=this._element;e(t).hasClass(c.DROPUP)&&(e(this._menu).hasClass(c.MENULEFT)||e(this._menu).hasClass(c.MENURIGHT))&&(o=t),this._popper=new n(o,this._menu,this._getPopperConfig()),"ontouchstart"in document.documentElement&&!e(t).closest(u.NAVBAR_NAV).length&&e("body").children().on("mouseover",null,e.noop),this._element.focus(),this._element.setAttribute("aria-expanded",!0),e(this._menu).toggleClass(c.SHOW),e(t).toggleClass(c.SHOW).trigger(e.Event(h.SHOWN,s))}}}},g.dispose=function(){e.removeData(this._element,i),e(this._element).off(o),this._element=null,this._menu=null,null!==this._popper&&this._popper.destroy(),this._popper=null},g.update=function(){this._inNavbar=this._detectNavbar(),null!==this._popper&&this._popper.scheduleUpdate()},g._addEventListeners=function(){var t=this;e(this._element).on(h.CLICK,function(e){e.preventDefault(),e.stopPropagation(),t.toggle()})},g._getConfig=function(n){return n=e.extend({},this.constructor.Default,e(this._element).data(),n),s.typeCheckConfig(t,n,this.constructor.DefaultType),n},g._getMenuElement=function(){if(!this._menu){var t=a._getParentFromElement(this._element);this._menu=e(t).find(u.MENU)[0]}return this._menu},g._getPlacement=function(){var t=e(this._element).parent(),n=d.BOTTOM;return t.hasClass(c.DROPUP)?(n=d.TOP,e(this._menu).hasClass(c.MENURIGHT)&&(n=d.TOPEND)):e(this._menu).hasClass(c.MENURIGHT)&&(n=d.BOTTOMEND),n},g._detectNavbar=function(){return e(this._element).closest(".navbar").length>0},g._getPopperConfig=function(){var t=this,n={};"function"==typeof this._config.offset?n.fn=function(n){return n.offsets=e.extend({},n.offsets,t._config.offset(n.offsets)||{}),n}:n.offset=this._config.offset;var i={placement:this._getPlacement(),modifiers:{offset:n,flip:{enabled:this._config.flip}}};return this._inNavbar&&(i.modifiers.applyStyle={enabled:!this._inNavbar}),i},a._jQueryInterface=function(t){return this.each(function(){var n=e(this).data(i),s="object"==typeof t?t:null;if(n||(n=new a(this,s),e(this).data(i,n)),"string"==typeof t){if("undefined"==typeof n[t])throw new Error('No method named "'+t+'"');n[t]()}})},a._clearMenus=function(t){if(!t||3!==t.which&&("keyup"!==t.type||9===t.which))for(var n=e.makeArray(e(u.DATA_TOGGLE)),s=0;s<n.length;s++){var r=a._getParentFromElement(n[s]),o=e(n[s]).data(i),l={relatedTarget:n[s]};if(o){var d=o._menu;if(e(r).hasClass(c.SHOW)&&!(t&&("click"===t.type&&/input|textarea/i.test(t.target.tagName)||"keyup"===t.type&&9===t.which)&&e.contains(r,t.target))){var f=e.Event(h.HIDE,l);e(r).trigger(f),f.isDefaultPrevented()||("ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),n[s].setAttribute("aria-expanded","false"),e(d).removeClass(c.SHOW),e(r).removeClass(c.SHOW).trigger(e.Event(h.HIDDEN,l)))}}}},a._getParentFromElement=function(t){var n,i=s.getSelectorFromElement(t);return i&&(n=e(i)[0]),n||t.parentNode},a._dataApiKeydownHandler=function(t){if(!(!l.test(t.which)||/button/i.test(t.target.tagName)&&32===t.which||/input|textarea/i.test(t.target.tagName)||(t.preventDefault(),t.stopPropagation(),this.disabled||e(this).hasClass(c.DISABLED)))){var n=a._getParentFromElement(this),i=e(n).hasClass(c.SHOW);if((i||27===t.which&&32===t.which)&&(!i||27!==t.which&&32!==t.which)){var s=e(n).find(u.VISIBLE_ITEMS).get();if(s.length){var r=s.indexOf(t.target);38===t.which&&r>0&&r--,40===t.which&&r<s.length-1&&r++,r<0&&(r=0),s[r].focus()}}else{if(27===t.which){var o=e(n).find(u.DATA_TOGGLE)[0];e(o).trigger("focus")}e(this).trigger("click")}}},r(a,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return f}},{key:"DefaultType",get:function(){return _}}]),a}();return e(document).on(h.KEYDOWN_DATA_API,u.DATA_TOGGLE,g._dataApiKeydownHandler).on(h.KEYDOWN_DATA_API,u.MENU,g._dataApiKeydownHandler).on(h.CLICK_DATA_API+" "+h.KEYUP_DATA_API,g._clearMenus).on(h.CLICK_DATA_API,u.DATA_TOGGLE,function(t){t.preventDefault(),t.stopPropagation(),g._jQueryInterface.call(e(this),"toggle")}).on(h.CLICK_DATA_API,u.FORM_CHILD,function(t){t.stopPropagation()}),e.fn[t]=g._jQueryInterface,e.fn[t].Constructor=g,e.fn[t].noConflict=function(){return e.fn[t]=a,g._jQueryInterface},g}(),d=function(){var 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r=e.Event(l.SHOWN,{relatedTarget:t}),o=function(){n._config.focus&&n._element.focus(),n._isTransitioning=!1,e(n._element).trigger(r)};i?e(this._dialog).one(s.TRANSITION_END,o).emulateTransitionEnd(300):o()},u._enforceFocus=function(){var t=this;e(document).off(l.FOCUSIN).on(l.FOCUSIN,function(n){document===n.target||t._element===n.target||e(t._element).has(n.target).length||t._element.focus()})},u._setEscapeEvent=function(){var t=this;this._isShown&&this._config.keyboard?e(this._element).on(l.KEYDOWN_DISMISS,function(e){27===e.which&&(e.preventDefault(),t.hide())}):this._isShown||e(this._element).off(l.KEYDOWN_DISMISS)},u._setResizeEvent=function(){var t=this;this._isShown?e(window).on(l.RESIZE,function(e){return t.handleUpdate(e)}):e(window).off(l.RESIZE)},u._hideModal=function(){var t=this;this._element.style.display="none",this._element.setAttribute("aria-hidden",!0),this._isTransitioning=!1,this._showBackdrop(function(){e(document.body).removeClass(h.OPEN),t._resetAdjustments(),t._resetScrollbar(),e(t._element).trigger(l.HIDDEN)})},u._removeBackdrop=function(){this._backdrop&&(e(this._backdrop).remove(),this._backdrop=null)},u._showBackdrop=function(t){var n=this,i=e(this._element).hasClass(h.FADE)?h.FADE:"";if(this._isShown&&this._config.backdrop){var r=s.supportsTransitionEnd()&&i;if(this._backdrop=document.createElement("div"),this._backdrop.className=h.BACKDROP,i&&e(this._backdrop).addClass(i),e(this._backdrop).appendTo(document.body),e(this._element).on(l.CLICK_DISMISS,function(t){n._ignoreBackdropClick?n._ignoreBackdropClick=!1:t.target===t.currentTarget&&("static"===n._config.backdrop?n._element.focus():n.hide())}),r&&s.reflow(this._backdrop),e(this._backdrop).addClass(h.SHOW),!t)return;if(!r)return void 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t=this;if(this._isBodyOverflowing){e(c.FIXED_CONTENT).each(function(n,i){var s=e(i)[0].style.paddingRight,r=e(i).css("padding-right");e(i).data("padding-right",s).css("padding-right",parseFloat(r)+t._scrollbarWidth+"px")}),e(c.STICKY_CONTENT).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)-t._scrollbarWidth+"px")}),e(c.NAVBAR_TOGGLER).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)+t._scrollbarWidth+"px")});var n=document.body.style.paddingRight,i=e("body").css("padding-right");e("body").data("padding-right",n).css("padding-right",parseFloat(i)+this._scrollbarWidth+"px")}},u._resetScrollbar=function(){e(c.FIXED_CONTENT).each(function(t,n){var i=e(n).data("padding-right");"undefined"!=typeof i&&e(n).css("padding-right",i).removeData("padding-right")}),e(c.STICKY_CONTENT+", 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r=e.contains(this.element.ownerDocument.documentElement,this.element);if(i.isDefaultPrevented()||!r)return;var a=this.getTipElement(),l=s.getUID(this.constructor.NAME);a.setAttribute("id",l),this.element.setAttribute("aria-describedby",l),this.setContent(),this.config.animation&&e(a).addClass(f.FADE);var h="function"==typeof this.config.placement?this.config.placement.call(this,a,this.element):this.config.placement,c=this._getAttachment(h);this.addAttachmentClass(c);var d=!1===this.config.container?document.body:e(this.config.container);e(a).data(this.constructor.DATA_KEY,this),e.contains(this.element.ownerDocument.documentElement,this.tip)||e(a).appendTo(d),e(this.element).trigger(this.constructor.Event.INSERTED),this._popper=new 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n=this,i=this.getTipElement(),r=e.Event(this.constructor.Event.HIDE),o=function(){n._hoverState!==u.SHOW&&i.parentNode&&i.parentNode.removeChild(i),n._cleanTipClass(),n.element.removeAttribute("aria-describedby"),e(n.element).trigger(n.constructor.Event.HIDDEN),null!==n._popper&&n._popper.destroy(),t&&t()};e(this.element).trigger(r),r.isDefaultPrevented()||(e(i).removeClass(f.SHOW),"ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),this._activeTrigger[g.CLICK]=!1,this._activeTrigger[g.FOCUS]=!1,this._activeTrigger[g.HOVER]=!1,s.supportsTransitionEnd()&&e(this.tip).hasClass(f.FADE)?e(i).one(s.TRANSITION_END,o).emulateTransitionEnd(150):o(),this._hoverState="")},m.update=function(){null!==this._popper&&this._popper.scheduleUpdate()},m.isWithContent=function(){return Boolean(this.getTitle())},m.addAttachmentClass=function(t){e(this.getTipElement()).addClass("bs-tooltip-"+t)},m.getTipElement=function(){return this.tip=this.tip||e(this.config.template)[0],this.tip},m.setContent=function(){var t=e(this.getTipElement());this.setElementContent(t.find(_.TOOLTIP_INNER),this.getTitle()),t.removeClass(f.FADE+" "+f.SHOW)},m.setElementContent=function(t,n){var i=this.config.html;"object"==typeof n&&(n.nodeType||n.jquery)?i?e(n).parent().is(t)||t.empty().append(n):t.text(e(n).text()):t[i?"html":"text"](n)},m.getTitle=function(){var t=this.element.getAttribute("data-original-title");return t||(t="function"==typeof this.config.title?this.config.title.call(this.element):this.config.title),t},m._getAttachment=function(t){return h[t.toUpperCase()]},m._setListeners=function(){var t=this;this.config.trigger.split(" ").forEach(function(n){if("click"===n)e(t.element).on(t.constructor.Event.CLICK,t.config.selector,function(e){return t.toggle(e)});else if(n!==g.MANUAL){var i=n===g.HOVER?t.constructor.Event.MOUSEENTER:t.constructor.Event.FOCUSIN,s=n===g.HOVER?t.constructor.Event.MOUSELEAVE:t.constructor.Event.FOCUSOUT;e(t.element).on(i,t.config.selector,function(e){return t._enter(e)}).on(s,t.config.selector,function(e){return t._leave(e)})}e(t.element).closest(".modal").on("hide.bs.modal",function(){return t.hide()})}),this.config.selector?this.config=e.extend({},this.config,{trigger:"manual",selector:""}):this._fixTitle()},m._fixTitle=function(){var t=typeof this.element.getAttribute("data-original-title");(this.element.getAttribute("title")||"string"!==t)&&(this.element.setAttribute("data-original-title",this.element.getAttribute("title")||""),this.element.setAttribute("title",""))},m._enter=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusin"===t.type?g.FOCUS:g.HOVER]=!0),e(n.getTipElement()).hasClass(f.SHOW)||n._hoverState===u.SHOW?n._hoverState=u.SHOW:(clearTimeout(n._timeout),n._hoverState=u.SHOW,n.config.delay&&n.config.delay.show?n._timeout=setTimeout(function(){n._hoverState===u.SHOW&&n.show()},n.config.delay.show):n.show())},m._leave=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusout"===t.type?g.FOCUS:g.HOVER]=!1),n._isWithActiveTrigger()||(clearTimeout(n._timeout),n._hoverState=u.OUT,n.config.delay&&n.config.delay.hide?n._timeout=setTimeout(function(){n._hoverState===u.OUT&&n.hide()},n.config.delay.hide):n.hide())},m._isWithActiveTrigger=function(){for(var t in this._activeTrigger)if(this._activeTrigger[t])return!0;return!1},m._getConfig=function(n){return"number"==typeof(n=e.extend({},this.constructor.Default,e(this.element).data(),n)).delay&&(n.delay={show:n.delay,hide:n.delay}),"number"==typeof n.title&&(n.title=n.title.toString()),"number"==typeof n.content&&(n.content=n.content.toString()),s.typeCheckConfig(t,n,this.constructor.DefaultType),n},m._getDelegateConfig=function(){var t={};if(this.config)for(var e in this.config)this.constructor.Default[e]!==this.config[e]&&(t[e]=this.config[e]);return t},m._cleanTipClass=function(){var t=e(this.getTipElement()),n=t.attr("class").match(a);null!==n&&n.length>0&&t.removeClass(n.join(""))},m._handlePopperPlacementChange=function(t){this._cleanTipClass(),this.addAttachmentClass(this._getAttachment(t.placement))},m._fixTransition=function(){var t=this.getTipElement(),n=this.config.animation;null===t.getAttribute("x-placement")&&(e(t).removeClass(f.FADE),this.config.animation=!1,this.hide(),this.show(),this.config.animation=n)},o._jQueryInterface=function(t){return this.each(function(){var n=e(this).data("bs.tooltip"),i="object"==typeof t&&t;if((n||!/dispose|hide/.test(t))&&(n||(n=new o(this,i),e(this).data("bs.tooltip",n)),"string"==typeof t)){if("undefined"==typeof n[t])throw new Error('No method named "'+t+'"');n[t]()}})},r(o,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return c}},{key:"NAME",get:function(){return t}},{key:"DATA_KEY",get:function(){return"bs.tooltip"}},{key:"Event",get:function(){return d}},{key:"EVENT_KEY",get:function(){return i}},{key:"DefaultType",get:function(){return l}}]),o}();return e.fn[t]=m._jQueryInterface,e.fn[t].Constructor=m,e.fn[t].noConflict=function(){return e.fn[t]=o,m._jQueryInterface},m}(),_=function(){var 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+"_"+location.pathname,JSON.stringify(b))}catch(c){}},fnStateSaveParams:null,iStateDuration:7200,iDeferLoading:null,iDisplayLength:10,iDisplayStart:0,iTabIndex:0,oClasses:{},oLanguage:{oAria:{sSortAscending:": activate to sort column ascending",sSortDescending:": activate to sort column descending"},oPaginate:{sFirst:"First",sLast:"Last",sNext:"Next",sPrevious:"Previous"},sEmptyTable:"No data available in table",sInfo:"Showing _START_ to _END_ of _TOTAL_ entries",sInfoEmpty:"Showing 0 to 0 of 0 entries",
+sInfoFiltered:"(filtered from _MAX_ total entries)",sInfoPostFix:"",sDecimal:"",sThousands:",",sLengthMenu:"Show _MENU_ entries",sLoadingRecords:"Loading...",sProcessing:"Processing...",sSearch:"Search:",sSearchPlaceholder:"",sUrl:"",sZeroRecords:"No matching records found"},oSearch:h.extend({},m.models.oSearch),sAjaxDataProp:"data",sAjaxSource:null,sDom:"lfrtip",searchDelay:null,sPaginationType:"simple_numbers",sScrollX:"",sScrollXInner:"",sScrollY:"",sServerMethod:"GET",renderer:null,rowId:"DT_RowId"};
+X(m.defaults);m.defaults.column={aDataSort:null,iDataSort:-1,asSorting:["asc","desc"],bSearchable:!0,bSortable:!0,bVisible:!0,fnCreatedCell:null,mData:null,mRender:null,sCellType:"td",sClass:"",sContentPadding:"",sDefaultContent:null,sName:"",sSortDataType:"std",sTitle:null,sType:null,sWidth:null};X(m.defaults.column);m.models.oSettings={oFeatures:{bAutoWidth:null,bDeferRender:null,bFilter:null,bInfo:null,bLengthChange:null,bPaginate:null,bProcessing:null,bServerSide:null,bSort:null,bSortMulti:null,
+bSortClasses:null,bStateSave:null},oScroll:{bCollapse:null,iBarWidth:0,sX:null,sXInner:null,sY:null},oLanguage:{fnInfoCallback:null},oBrowser:{bScrollOversize:!1,bScrollbarLeft:!1,bBounding:!1,barWidth:0},ajax:null,aanFeatures:[],aoData:[],aiDisplay:[],aiDisplayMaster:[],aIds:{},aoColumns:[],aoHeader:[],aoFooter:[],oPreviousSearch:{},aoPreSearchCols:[],aaSorting:null,aaSortingFixed:[],asStripeClasses:null,asDestroyStripes:[],sDestroyWidth:0,aoRowCallback:[],aoHeaderCallback:[],aoFooterCallback:[],
+aoDrawCallback:[],aoRowCreatedCallback:[],aoPreDrawCallback:[],aoInitComplete:[],aoStateSaveParams:[],aoStateLoadParams:[],aoStateLoaded:[],sTableId:"",nTable:null,nTHead:null,nTFoot:null,nTBody:null,nTableWrapper:null,bDeferLoading:!1,bInitialised:!1,aoOpenRows:[],sDom:null,searchDelay:null,sPaginationType:"two_button",iStateDuration:0,aoStateSave:[],aoStateLoad:[],oSavedState:null,oLoadedState:null,sAjaxSource:null,sAjaxDataProp:null,bAjaxDataGet:!0,jqXHR:null,json:k,oAjaxData:k,fnServerData:null,
+aoServerParams:[],sServerMethod:null,fnFormatNumber:null,aLengthMenu:null,iDraw:0,bDrawing:!1,iDrawError:-1,_iDisplayLength:10,_iDisplayStart:0,_iRecordsTotal:0,_iRecordsDisplay:0,oClasses:{},bFiltered:!1,bSorted:!1,bSortCellsTop:null,oInit:null,aoDestroyCallback:[],fnRecordsTotal:function(){return"ssp"==y(this)?1*this._iRecordsTotal:this.aiDisplayMaster.length},fnRecordsDisplay:function(){return"ssp"==y(this)?1*this._iRecordsDisplay:this.aiDisplay.length},fnDisplayEnd:function(){var a=this._iDisplayLength,
+b=this._iDisplayStart,c=b+a,d=this.aiDisplay.length,e=this.oFeatures,f=e.bPaginate;return e.bServerSide?!1===f||-1===a?b+d:Math.min(b+a,this._iRecordsDisplay):!f||c>d||-1===a?d:c},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null,aLastSort:[],oPlugins:{},rowIdFn:null,rowId:null};m.ext=x={buttons:{},classes:{},build:"bs4/dt-1.10.16/b-1.4.2/b-colvis-1.4.2/b-html5-1.4.2/cr-1.4.1",errMode:"alert",feature:[],search:[],selector:{cell:[],column:[],row:[]},internal:{},legacy:{ajax:null},pager:{},renderer:{pageButton:{},header:{}},
+order:{},type:{detect:[],search:{},order:{}},_unique:0,fnVersionCheck:m.fnVersionCheck,iApiIndex:0,oJUIClasses:{},sVersion:m.version};h.extend(x,{afnFiltering:x.search,aTypes:x.type.detect,ofnSearch:x.type.search,oSort:x.type.order,afnSortData:x.order,aoFeatures:x.feature,oApi:x.internal,oStdClasses:x.classes,oPagination:x.pager});h.extend(m.ext.classes,{sTable:"dataTable",sNoFooter:"no-footer",sPageButton:"paginate_button",sPageButtonActive:"current",sPageButtonDisabled:"disabled",sStripeOdd:"odd",
+sStripeEven:"even",sRowEmpty:"dataTables_empty",sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sFilterInput:"",sLengthSelect:"",sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",
+sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sHeaderTH:"",sFooterTH:"",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",sJUIHeader:"",sJUIFooter:""});var Kb=m.ext.pager;h.extend(Kb,{simple:function(){return["previous","next"]},full:function(){return["first","previous","next","last"]},numbers:function(a,b){return[ha(a,
+b)]},simple_numbers:function(a,b){return["previous",ha(a,b),"next"]},full_numbers:function(a,b){return["first","previous",ha(a,b),"next","last"]},first_last_numbers:function(a,b){return["first",ha(a,b),"last"]},_numbers:ha,numbers_length:7});h.extend(!0,m.ext.renderer,{pageButton:{_:function(a,b,c,d,e,f){var g=a.oClasses,j=a.oLanguage.oPaginate,i=a.oLanguage.oAria.paginate||{},n,l,m=0,o=function(b,d){var k,s,u,r,v=function(b){Sa(a,b.data.action,true)};k=0;for(s=d.length;k<s;k++){r=d[k];if(h.isArray(r)){u=
+h("<"+(r.DT_el||"div")+"/>").appendTo(b);o(u,r)}else{n=null;l="";switch(r){case "ellipsis":b.append('<span class="ellipsis">&#x2026;</span>');break;case "first":n=j.sFirst;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "previous":n=j.sPrevious;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "next":n=j.sNext;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;case "last":n=j.sLast;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;default:n=r+1;l=e===r?g.sPageButtonActive:""}if(n!==null){u=h("<a>",{"class":g.sPageButton+
+" "+l,"aria-controls":a.sTableId,"aria-label":i[r],"data-dt-idx":m,tabindex:a.iTabIndex,id:c===0&&typeof r==="string"?a.sTableId+"_"+r:null}).html(n).appendTo(b);Va(u,{action:r},v);m++}}}},s;try{s=h(b).find(G.activeElement).data("dt-idx")}catch(u){}o(h(b).empty(),d);s!==k&&h(b).find("[data-dt-idx="+s+"]").focus()}}});h.extend(m.ext.type.detect,[function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c)?"num"+c:null},function(a){if(a&&!(a instanceof Date)&&!Zb.test(a))return null;var b=Date.parse(a);
+return null!==b&&!isNaN(b)||L(a)?"date":null},function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c,!0)?"num-fmt"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c)?"html-num"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c,!0)?"html-num-fmt"+c:null},function(a){return L(a)||"string"===typeof a&&-1!==a.indexOf("<")?"html":null}]);h.extend(m.ext.type.search,{html:function(a){return L(a)?a:"string"===typeof a?a.replace(Mb," ").replace(Aa,""):""},string:function(a){return L(a)?
+a:"string"===typeof a?a.replace(Mb," "):a}});var za=function(a,b,c,d){if(0!==a&&(!a||"-"===a))return-Infinity;b&&(a=Ob(a,b));a.replace&&(c&&(a=a.replace(c,"")),d&&(a=a.replace(d,"")));return 1*a};h.extend(x.type.order,{"date-pre":function(a){return Date.parse(a)||-Infinity},"html-pre":function(a){return L(a)?"":a.replace?a.replace(/<.*?>/g,"").toLowerCase():a+""},"string-pre":function(a){return L(a)?"":"string"===typeof a?a.toLowerCase():!a.toString?"":a.toString()},"string-asc":function(a,b){return a<
+b?-1:a>b?1:0},"string-desc":function(a,b){return a<b?1:a>b?-1:0}});cb("");h.extend(!0,m.ext.renderer,{header:{_:function(a,b,c,d){h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(c.sSortingClass+" "+d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass)}})},jqueryui:function(a,b,c,d){h("<div/>").addClass(d.sSortJUIWrapper).append(b.contents()).append(h("<span/>").addClass(d.sSortIcon+" "+c.sSortingClassJUI)).appendTo(b);
+h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass);b.find("span."+d.sSortIcon).removeClass(d.sSortJUIAsc+" "+d.sSortJUIDesc+" "+d.sSortJUI+" "+d.sSortJUIAscAllowed+" "+d.sSortJUIDescAllowed).addClass(h[e]=="asc"?d.sSortJUIAsc:h[e]=="desc"?d.sSortJUIDesc:c.sSortingClassJUI)}})}}});var Vb=function(a){return"string"===typeof a?a.replace(/</g,"&lt;").replace(/>/g,"&gt;").replace(/"/g,
+"&quot;"):a};m.render={number:function(a,b,c,d,e){return{display:function(f){if("number"!==typeof f&&"string"!==typeof f)return f;var g=0>f?"-":"",h=parseFloat(f);if(isNaN(h))return Vb(f);h=h.toFixed(c);f=Math.abs(h);h=parseInt(f,10);f=c?b+(f-h).toFixed(c).substring(2):"";return g+(d||"")+h.toString().replace(/\B(?=(\d{3})+(?!\d))/g,a)+f+(e||"")}}},text:function(){return{display:Vb}}};h.extend(m.ext.internal,{_fnExternApiFunc:Lb,_fnBuildAjax:sa,_fnAjaxUpdate:kb,_fnAjaxParameters:tb,_fnAjaxUpdateDraw:ub,
+_fnAjaxDataSrc:ta,_fnAddColumn:Da,_fnColumnOptions:ja,_fnAdjustColumnSizing:Y,_fnVisibleToColumnIndex:Z,_fnColumnIndexToVisible:$,_fnVisbleColumns:aa,_fnGetColumns:la,_fnColumnTypes:Fa,_fnApplyColumnDefs:hb,_fnHungarianMap:X,_fnCamelToHungarian:I,_fnLanguageCompat:Ca,_fnBrowserDetect:fb,_fnAddData:M,_fnAddTr:ma,_fnNodeToDataIndex:function(a,b){return b._DT_RowIndex!==k?b._DT_RowIndex:null},_fnNodeToColumnIndex:function(a,b,c){return h.inArray(c,a.aoData[b].anCells)},_fnGetCellData:B,_fnSetCellData:ib,
+_fnSplitObjNotation:Ia,_fnGetObjectDataFn:Q,_fnSetObjectDataFn:R,_fnGetDataMaster:Ja,_fnClearTable:na,_fnDeleteIndex:oa,_fnInvalidate:ca,_fnGetRowElements:Ha,_fnCreateTr:Ga,_fnBuildHead:jb,_fnDrawHead:ea,_fnDraw:N,_fnReDraw:S,_fnAddOptionsHtml:mb,_fnDetectHeader:da,_fnGetUniqueThs:ra,_fnFeatureHtmlFilter:ob,_fnFilterComplete:fa,_fnFilterCustom:xb,_fnFilterColumn:wb,_fnFilter:vb,_fnFilterCreateSearch:Oa,_fnEscapeRegex:Pa,_fnFilterData:yb,_fnFeatureHtmlInfo:rb,_fnUpdateInfo:Bb,_fnInfoMacros:Cb,_fnInitialise:ga,
+_fnInitComplete:ua,_fnLengthChange:Qa,_fnFeatureHtmlLength:nb,_fnFeatureHtmlPaginate:sb,_fnPageChange:Sa,_fnFeatureHtmlProcessing:pb,_fnProcessingDisplay:C,_fnFeatureHtmlTable:qb,_fnScrollDraw:ka,_fnApplyToChildren:H,_fnCalculateColumnWidths:Ea,_fnThrottle:Na,_fnConvertToWidth:Db,_fnGetWidestNode:Eb,_fnGetMaxLenString:Fb,_fnStringToCss:v,_fnSortFlatten:V,_fnSort:lb,_fnSortAria:Hb,_fnSortListener:Ua,_fnSortAttachListener:La,_fnSortingClasses:wa,_fnSortData:Gb,_fnSaveState:xa,_fnLoadState:Ib,_fnSettingsFromNode:ya,
+_fnLog:J,_fnMap:F,_fnBindAction:Va,_fnCallbackReg:z,_fnCallbackFire:r,_fnLengthOverflow:Ra,_fnRenderer:Ma,_fnDataSource:y,_fnRowAttributes:Ka,_fnCalculateEnd:function(){}});h.fn.dataTable=m;m.$=h;h.fn.dataTableSettings=m.settings;h.fn.dataTableExt=m.ext;h.fn.DataTable=function(a){return h(this).dataTable(a).api()};h.each(m,function(a,b){h.fn.DataTable[a]=b});return h.fn.dataTable});
+
+
+/*!
+ DataTables Bootstrap 3 integration
+ ©2011-2015 SpryMedia Ltd - datatables.net/license
+*/
+(function(b){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(a){return b(a,window,document)}):"object"===typeof exports?module.exports=function(a,d){a||(a=window);if(!d||!d.fn.dataTable)d=require("datatables.net")(a,d).$;return b(d,a,a.document)}:b(jQuery,window,document)})(function(b,a,d,m){var f=b.fn.dataTable;b.extend(!0,f.defaults,{dom:"<'row'<'col-sm-12 col-md-6'l><'col-sm-12 col-md-6'f>><'row'<'col-sm-12'tr>><'row'<'col-sm-12 col-md-5'i><'col-sm-12 col-md-7'p>>",
+renderer:"bootstrap"});b.extend(f.ext.classes,{sWrapper:"dataTables_wrapper container-fluid dt-bootstrap4",sFilterInput:"form-control form-control-sm",sLengthSelect:"form-control form-control-sm",sProcessing:"dataTables_processing card",sPageButton:"paginate_button page-item"});f.ext.renderer.pageButton.bootstrap=function(a,h,r,s,j,n){var o=new f.Api(a),t=a.oClasses,k=a.oLanguage.oPaginate,u=a.oLanguage.oAria.paginate||{},e,g,p=0,q=function(d,f){var l,h,i,c,m=function(a){a.preventDefault();!b(a.currentTarget).hasClass("disabled")&&
+o.page()!=a.data.action&&o.page(a.data.action).draw("page")};l=0;for(h=f.length;l<h;l++)if(c=f[l],b.isArray(c))q(d,c);else{g=e="";switch(c){case "ellipsis":e="&#x2026;";g="disabled";break;case "first":e=k.sFirst;g=c+(0<j?"":" disabled");break;case "previous":e=k.sPrevious;g=c+(0<j?"":" disabled");break;case "next":e=k.sNext;g=c+(j<n-1?"":" disabled");break;case "last":e=k.sLast;g=c+(j<n-1?"":" disabled");break;default:e=c+1,g=j===c?"active":""}e&&(i=b("<li>",{"class":t.sPageButton+" "+g,id:0===r&&
+"string"===typeof c?a.sTableId+"_"+c:null}).append(b("<a>",{href:"#","aria-controls":a.sTableId,"aria-label":u[c],"data-dt-idx":p,tabindex:a.iTabIndex,"class":"page-link"}).html(e)).appendTo(d),a.oApi._fnBindAction(i,{action:c},m),p++)}},i;try{i=b(h).find(d.activeElement).data("dt-idx")}catch(v){}q(b(h).empty().html('<ul class="pagination"/>').children("ul"),s);i!==m&&b(h).find("[data-dt-idx="+i+"]").focus()};return f});
+
+
+/*!
+ Buttons for DataTables 1.4.2
+ ©2016-2017 SpryMedia Ltd - datatables.net/license
+*/
+(function(d){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(n){return d(n,window,document)}):"object"===typeof exports?module.exports=function(n,o){n||(n=window);if(!o||!o.fn.dataTable)o=require("datatables.net")(n,o).$;return d(o,n,n.document)}:d(jQuery,window,document)})(function(d,n,o,l){var i=d.fn.dataTable,w=0,x=0,j=i.ext.buttons,m=function(a,b){"undefined"===typeof b&&(b={});!0===b&&(b={});d.isArray(b)&&(b={buttons:b});this.c=d.extend(!0,{},m.defaults,b);
+b.buttons&&(this.c.buttons=b.buttons);this.s={dt:new i.Api(a),buttons:[],listenKeys:"",namespace:"dtb"+w++};this.dom={container:d("<"+this.c.dom.container.tag+"/>").addClass(this.c.dom.container.className)};this._constructor()};d.extend(m.prototype,{action:function(a,b){var c=this._nodeToButton(a);if(b===l)return c.conf.action;c.conf.action=b;return this},active:function(a,b){var c=this._nodeToButton(a),e=this.c.dom.button.active,c=d(c.node);if(b===l)return c.hasClass(e);c.toggleClass(e,b===l?!0:
+b);return this},add:function(a,b){var c=this.s.buttons;if("string"===typeof b){for(var e=b.split("-"),c=this.s,d=0,h=e.length-1;d<h;d++)c=c.buttons[1*e[d]];c=c.buttons;b=1*e[e.length-1]}this._expandButton(c,a,!1,b);this._draw();return this},container:function(){return this.dom.container},disable:function(a){a=this._nodeToButton(a);d(a.node).addClass(this.c.dom.button.disabled);return this},destroy:function(){d("body").off("keyup."+this.s.namespace);var a=this.s.buttons.slice(),b,c;b=0;for(c=a.length;b<
+c;b++)this.remove(a[b].node);this.dom.container.remove();a=this.s.dt.settings()[0];b=0;for(c=a.length;b<c;b++)if(a.inst===this){a.splice(b,1);break}return this},enable:function(a,b){if(!1===b)return this.disable(a);var c=this._nodeToButton(a);d(c.node).removeClass(this.c.dom.button.disabled);return this},name:function(){return this.c.name},node:function(a){a=this._nodeToButton(a);return d(a.node)},processing:function(a,b){var c=this._nodeToButton(a);if(b===l)return d(c.node).hasClass("processing");
+d(c.node).toggleClass("processing",b);return this},remove:function(a){var b=this._nodeToButton(a),c=this._nodeToHost(a),e=this.s.dt;if(b.buttons.length)for(var g=b.buttons.length-1;0<=g;g--)this.remove(b.buttons[g].node);b.conf.destroy&&b.conf.destroy.call(e.button(a),e,d(a),b.conf);this._removeKey(b.conf);d(b.node).remove();a=d.inArray(b,c);c.splice(a,1);return this},text:function(a,b){var c=this._nodeToButton(a),e=this.c.dom.collection.buttonLiner,e=c.inCollection&&e&&e.tag?e.tag:this.c.dom.buttonLiner.tag,
+g=this.s.dt,h=d(c.node),f=function(a){return"function"===typeof a?a(g,h,c.conf):a};if(b===l)return f(c.conf.text);c.conf.text=b;e?h.children(e).html(f(b)):h.html(f(b));return this},_constructor:function(){var a=this,b=this.s.dt,c=b.settings()[0],e=this.c.buttons;c._buttons||(c._buttons=[]);c._buttons.push({inst:this,name:this.c.name});for(var c=0,g=e.length;c<g;c++)this.add(e[c]);b.on("destroy",function(){a.destroy()});d("body").on("keyup."+this.s.namespace,function(b){if(!o.activeElement||o.activeElement===
+o.body){var c=String.fromCharCode(b.keyCode).toLowerCase();a.s.listenKeys.toLowerCase().indexOf(c)!==-1&&a._keypress(c,b)}})},_addKey:function(a){a.key&&(this.s.listenKeys+=d.isPlainObject(a.key)?a.key.key:a.key)},_draw:function(a,b){a||(a=this.dom.container,b=this.s.buttons);a.children().detach();for(var c=0,e=b.length;c<e;c++)a.append(b[c].inserter),a.append(" "),b[c].buttons&&b[c].buttons.length&&this._draw(b[c].collection,b[c].buttons)},_expandButton:function(a,b,c,e){for(var g=this.s.dt,h=0,
+b=!d.isArray(b)?[b]:b,f=0,r=b.length;f<r;f++){var k=this._resolveExtends(b[f]);if(k)if(d.isArray(k))this._expandButton(a,k,c,e);else{var p=this._buildButton(k,c);if(p){e!==l?(a.splice(e,0,p),e++):a.push(p);if(p.conf.buttons){var t=this.c.dom.collection;p.collection=d("<"+t.tag+"/>").addClass(t.className).attr("role","menu");p.conf._collection=p.collection;this._expandButton(p.buttons,p.conf.buttons,!0,e)}k.init&&k.init.call(g.button(p.node),g,d(p.node),k);h++}}}},_buildButton:function(a,b){var c=
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+
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+/*!
+ ColReorder 1.4.1
+ ©2010-2017 SpryMedia Ltd - datatables.net/license
+*/
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+
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n?"MMM"===t?-1!==(i=S.call(this._shortMonthsParse,e))?i:null:-1!==(i=S.call(this._longMonthsParse,e))?i:null:"MMM"===t?-1!==(i=S.call(this._shortMonthsParse,e))||-1!==(i=S.call(this._longMonthsParse,e))?i:null:-1!==(i=S.call(this._longMonthsParse,e))||-1!==(i=S.call(this._shortMonthsParse,e))?i:null}.call(this,e,t,n);for(this._monthsParse||(this._monthsParse=[],this._longMonthsParse=[],this._shortMonthsParse=[]),s=0;s<12;s++){if(i=l([2e3,s]),n&&!this._longMonthsParse[s]&&(this._longMonthsParse[s]=new RegExp("^"+this.months(i,"").replace(".","")+"$","i"),this._shortMonthsParse[s]=new RegExp("^"+this.monthsShort(i,"").replace(".","")+"$","i")),n||this._monthsParse[s]||(i="^"+this.months(i,"")+"|^"+this.monthsShort(i,""),this._monthsParse[s]=new RegExp(i.replace(".",""),"i")),n&&"MMMM"===t&&this._longMonthsParse[s].test(e))return s;if(n&&"MMM"===t&&this._shortMonthsParse[s].test(e))return s;if(!n&&this._monthsParse[s].test(e))return s}},w.monthsRegex=function(e){return this._monthsParseExact?(c(this,"_monthsRegex")||Ee.call(this),e?this._monthsStrictRegex:this._monthsRegex):(c(this,"_monthsRegex")||(this._monthsRegex=Le),this._monthsStrictRegex&&e?this._monthsStrictRegex:this._monthsRegex)},w.monthsShortRegex=function(e){return this._monthsParseExact?(c(this,"_monthsRegex")||Ee.call(this),e?this._monthsShortStrictRegex:this._monthsShortRegex):(c(this,"_monthsShortRegex")||(this._monthsShortRegex=Fe),this._monthsShortStrictRegex&&e?this._monthsShortStrictRegex:this._monthsShortRegex)},w.week=function(e){return qe(e,this._week.dow,this._week.doy).week},w.firstDayOfYear=function(){return this._week.doy},w.firstDayOfWeek=function(){return this._week.dow},w.weekdays=function(e,t){return t=a(this._weekdays)?this._weekdays:this._weekdays[e&&!0!==e&&this._weekdays.isFormat.test(t)?"format":"standalone"],!0===e?Be(t,this._week.dow):e?t[e.day()]:t},w.weekdaysMin=function(e){return!0===e?Be(this._weekdaysMin,this._week.dow):e?this._weekdaysMin[e.day()]:this._weekdaysMin},w.weekdaysShort=function(e){return!0===e?Be(this._weekdaysShort,this._week.dow):e?this._weekdaysShort[e.day()]:this._weekdaysShort},w.weekdaysParse=function(e,t,n){var s,i;if(this._weekdaysParseExact)return function(e,t,n){var s,i,r,e=e.toLocaleLowerCase();if(!this._weekdaysParse)for(this._weekdaysParse=[],this._shortWeekdaysParse=[],this._minWeekdaysParse=[],s=0;s<7;++s)r=l([2e3,1]).day(s),this._minWeekdaysParse[s]=this.weekdaysMin(r,"").toLocaleLowerCase(),this._shortWeekdaysParse[s]=this.weekdaysShort(r,"").toLocaleLowerCase(),this._weekdaysParse[s]=this.weekdays(r,"").toLocaleLowerCase();return n?"dddd"===t?-1!==(i=S.call(this._weekdaysParse,e))?i:null:"ddd"===t?-1!==(i=S.call(this._shortWeekdaysParse,e))?i:null:-1!==(i=S.call(this._minWeekdaysParse,e))?i:null:"dddd"===t?-1!==(i=S.call(this._weekdaysParse,e))||-1!==(i=S.call(this._shortWeekdaysParse,e))||-1!==(i=S.call(this._minWeekdaysParse,e))?i:null:"ddd"===t?-1!==(i=S.call(this._shortWeekdaysParse,e))||-1!==(i=S.call(this._weekdaysParse,e))||-1!==(i=S.call(this._minWeekdaysParse,e))?i:null:-1!==(i=S.call(this._minWeekdaysParse,e))||-1!==(i=S.call(this._weekdaysParse,e))||-1!==(i=S.call(this._shortWeekdaysParse,e))?i:null}.call(this,e,t,n);for(this._weekdaysParse||(this._weekdaysParse=[],this._minWeekdaysParse=[],this._shortWeekdaysParse=[],this._fullWeekdaysParse=[]),s=0;s<7;s++){if(i=l([2e3,1]).day(s),n&&!this._fullWeekdaysParse[s]&&(this._fullWeekdaysParse[s]=new RegExp("^"+this.weekdays(i,"").replace(".","\\.?")+"$","i"),this._shortWeekdaysParse[s]=new RegExp("^"+this.weekdaysShort(i,"").replace(".","\\.?")+"$","i"),this._minWeekdaysParse[s]=new RegExp("^"+this.weekdaysMin(i,"").replace(".","\\.?")+"$","i")),this._weekdaysParse[s]||(i="^"+this.weekdays(i,"")+"|^"+this.weekdaysShort(i,"")+"|^"+this.weekdaysMin(i,""),this._weekdaysParse[s]=new RegExp(i.replace(".",""),"i")),n&&"dddd"===t&&this._fullWeekdaysParse[s].test(e))return s;if(n&&"ddd"===t&&this._shortWeekdaysParse[s].test(e))return s;if(n&&"dd"===t&&this._minWeekdaysParse[s].test(e))return s;if(!n&&this._weekdaysParse[s].test(e))return s}},w.weekdaysRegex=function(e){return this._weekdaysParseExact?(c(this,"_weekdaysRegex")||nt.call(this),e?this._weekdaysStrictRegex:this._weekdaysRegex):(c(this,"_weekdaysRegex")||(this._weekdaysRegex=Ke),this._weekdaysStrictRegex&&e?this._weekdaysStrictRegex:this._weekdaysRegex)},w.weekdaysShortRegex=function(e){return this._weekdaysParseExact?(c(this,"_weekdaysRegex")||nt.call(this),e?this._weekdaysShortStrictRegex:this._weekdaysShortRegex):(c(this,"_weekdaysShortRegex")||(this._weekdaysShortRegex=et),this._weekdaysShortStrictRegex&&e?this._weekdaysShortStrictRegex:this._weekdaysShortRegex)},w.weekdaysMinRegex=function(e){return this._weekdaysParseExact?(c(this,"_weekdaysRegex")||nt.call(this),e?this._weekdaysMinStrictRegex:this._weekdaysMinRegex):(c(this,"_weekdaysMinRegex")||(this._weekdaysMinRegex=tt),this._weekdaysMinStrictRegex&&e?this._weekdaysMinStrictRegex:this._weekdaysMinRegex)},w.isPM=function(e){return"p"===(e+"").toLowerCase().charAt(0)},w.meridiem=function(e,t,n){return 11<e?n?"pm":"PM":n?"am":"AM"},ct("en",{eras:[{since:"0001-01-01",until:1/0,offset:1,name:"Anno Domini",narrow:"AD",abbr:"AD"},{since:"0000-12-31",until:-1/0,offset:1,name:"Before Christ",narrow:"BC",abbr:"BC"}],dayOfMonthOrdinalParse:/\d{1,2}(th|st|nd|rd)/,ordinal:function(e){var t=e%10;return e+(1===g(e%100/10)?"th":1==t?"st":2==t?"nd":3==t?"rd":"th")}}),f.lang=e("moment.lang is deprecated. Use moment.locale instead.",ct),f.langData=e("moment.langData is deprecated. 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+//# sourceMappingURL=moment.min.js.map
+
+
+
+/**
+* plotly.js v1.34.0
+* Copyright 2012-2018, Plotly, Inc.
+* All rights reserved.
+* Licensed under the MIT license
+*/
+!function(t){if("object"==typeof exports&&"undefined"!=typeof module)module.exports=t();else if("function"==typeof define&&define.amd)define([],t);else{("undefined"!=typeof window?window:"undefined"!=typeof global?global:"undefined"!=typeof self?self:this).Plotly=t()}}(function(){return function t(e,r,n){function i(o,s){if(!r[o]){if(!e[o]){var l="function"==typeof require&&require;if(!s&&l)return l(o,!0);if(a)return a(o,!0);var c=new Error("Cannot find module '"+o+"'");throw c.code="MODULE_NOT_FOUND",c}var u=r[o]={exports:{}};e[o][0].call(u.exports,function(t){var r=e[o][1][t];return i(r||t)},u,u.exports,t,e,r,n)}return r[o].exports}for(var a="function"==typeof require&&require,o=0;o<n.length;o++)i(n[o]);return i}({1:[function(t,e,r){"use strict";var n=t("../src/lib"),i={"X,X div":"font-family:'Open Sans', verdana, arial, sans-serif;margin:0;padding:0;","X input,X button":"font-family:'Open Sans', verdana, arial, sans-serif;","X input:focus,X button:focus":"outline:none;","X 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xt=(c+(n=n+Math.imul(f,$)|0)|0)+((8191&(i=(i=i+Math.imul(f,tt)|0)+Math.imul(h,$)|0))<<13)|0;c=((a=a+Math.imul(h,tt)|0)+(i>>>13)|0)+(xt>>>26)|0,xt&=67108863,n=Math.imul(T,U),i=(i=Math.imul(T,V))+Math.imul(E,U)|0,a=Math.imul(E,V),n=n+Math.imul(M,H)|0,i=(i=i+Math.imul(M,G)|0)+Math.imul(k,H)|0,a=a+Math.imul(k,G)|0,n=n+Math.imul(x,W)|0,i=(i=i+Math.imul(x,X)|0)+Math.imul(_,W)|0,a=a+Math.imul(_,X)|0,n=n+Math.imul(g,J)|0,i=(i=i+Math.imul(g,K)|0)+Math.imul(y,J)|0,a=a+Math.imul(y,K)|0,n=n+Math.imul(p,$)|0,i=(i=i+Math.imul(p,tt)|0)+Math.imul(m,$)|0,a=a+Math.imul(m,tt)|0;var 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wt=(c+(n=n+Math.imul(f,at)|0)|0)+((8191&(i=(i=i+Math.imul(f,ot)|0)+Math.imul(h,at)|0))<<13)|0;c=((a=a+Math.imul(h,ot)|0)+(i>>>13)|0)+(wt>>>26)|0,wt&=67108863,n=Math.imul(z,U),i=(i=Math.imul(z,V))+Math.imul(O,U)|0,a=Math.imul(O,V),n=n+Math.imul(L,H)|0,i=(i=i+Math.imul(L,G)|0)+Math.imul(C,H)|0,a=a+Math.imul(C,G)|0,n=n+Math.imul(T,W)|0,i=(i=i+Math.imul(T,X)|0)+Math.imul(E,W)|0,a=a+Math.imul(E,X)|0,n=n+Math.imul(M,J)|0,i=(i=i+Math.imul(M,K)|0)+Math.imul(k,J)|0,a=a+Math.imul(k,K)|0,n=n+Math.imul(x,$)|0,i=(i=i+Math.imul(x,tt)|0)+Math.imul(_,$)|0,a=a+Math.imul(_,tt)|0,n=n+Math.imul(g,rt)|0,i=(i=i+Math.imul(g,nt)|0)+Math.imul(y,rt)|0,a=a+Math.imul(y,nt)|0,n=n+Math.imul(p,at)|0,i=(i=i+Math.imul(p,ot)|0)+Math.imul(m,at)|0,a=a+Math.imul(m,ot)|0;var 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kt=(c+(n=n+Math.imul(f,ft)|0)|0)+((8191&(i=(i=i+Math.imul(f,ht)|0)+Math.imul(h,ft)|0))<<13)|0;c=((a=a+Math.imul(h,ht)|0)+(i>>>13)|0)+(kt>>>26)|0,kt&=67108863,n=Math.imul(F,U),i=(i=Math.imul(F,V))+Math.imul(j,U)|0,a=Math.imul(j,V),n=n+Math.imul(I,H)|0,i=(i=i+Math.imul(I,G)|0)+Math.imul(R,H)|0,a=a+Math.imul(R,G)|0,n=n+Math.imul(z,W)|0,i=(i=i+Math.imul(z,X)|0)+Math.imul(O,W)|0,a=a+Math.imul(O,X)|0,n=n+Math.imul(L,J)|0,i=(i=i+Math.imul(L,K)|0)+Math.imul(C,J)|0,a=a+Math.imul(C,K)|0,n=n+Math.imul(T,$)|0,i=(i=i+Math.imul(T,tt)|0)+Math.imul(E,$)|0,a=a+Math.imul(E,tt)|0,n=n+Math.imul(M,rt)|0,i=(i=i+Math.imul(M,nt)|0)+Math.imul(k,rt)|0,a=a+Math.imul(k,nt)|0,n=n+Math.imul(x,at)|0,i=(i=i+Math.imul(x,ot)|0)+Math.imul(_,at)|0,a=a+Math.imul(_,ot)|0,n=n+Math.imul(g,lt)|0,i=(i=i+Math.imul(g,ct)|0)+Math.imul(y,lt)|0,a=a+Math.imul(y,ct)|0,n=n+Math.imul(p,ft)|0,i=(i=i+Math.imul(p,ht)|0)+Math.imul(m,ft)|0,a=a+Math.imul(m,ht)|0;var At=(c+(n=n+Math.imul(f,pt)|0)|0)+((8191&(i=(i=i+Math.imul(f,mt)|0)+Math.imul(h,pt)|0))<<13)|0;c=((a=a+Math.imul(h,mt)|0)+(i>>>13)|0)+(At>>>26)|0,At&=67108863,n=Math.imul(F,H),i=(i=Math.imul(F,G))+Math.imul(j,H)|0,a=Math.imul(j,G),n=n+Math.imul(I,W)|0,i=(i=i+Math.imul(I,X)|0)+Math.imul(R,W)|0,a=a+Math.imul(R,X)|0,n=n+Math.imul(z,J)|0,i=(i=i+Math.imul(z,K)|0)+Math.imul(O,J)|0,a=a+Math.imul(O,K)|0,n=n+Math.imul(L,$)|0,i=(i=i+Math.imul(L,tt)|0)+Math.imul(C,$)|0,a=a+Math.imul(C,tt)|0,n=n+Math.imul(T,rt)|0,i=(i=i+Math.imul(T,nt)|0)+Math.imul(E,rt)|0,a=a+Math.imul(E,nt)|0,n=n+Math.imul(M,at)|0,i=(i=i+Math.imul(M,ot)|0)+Math.imul(k,at)|0,a=a+Math.imul(k,ot)|0,n=n+Math.imul(x,lt)|0,i=(i=i+Math.imul(x,ct)|0)+Math.imul(_,lt)|0,a=a+Math.imul(_,ct)|0,n=n+Math.imul(g,ft)|0,i=(i=i+Math.imul(g,ht)|0)+Math.imul(y,ft)|0,a=a+Math.imul(y,ht)|0;var Tt=(c+(n=n+Math.imul(p,pt)|0)|0)+((8191&(i=(i=i+Math.imul(p,mt)|0)+Math.imul(m,pt)|0))<<13)|0;c=((a=a+Math.imul(m,mt)|0)+(i>>>13)|0)+(Tt>>>26)|0,Tt&=67108863,n=Math.imul(F,W),i=(i=Math.imul(F,X))+Math.imul(j,W)|0,a=Math.imul(j,X),n=n+Math.imul(I,J)|0,i=(i=i+Math.imul(I,K)|0)+Math.imul(R,J)|0,a=a+Math.imul(R,K)|0,n=n+Math.imul(z,$)|0,i=(i=i+Math.imul(z,tt)|0)+Math.imul(O,$)|0,a=a+Math.imul(O,tt)|0,n=n+Math.imul(L,rt)|0,i=(i=i+Math.imul(L,nt)|0)+Math.imul(C,rt)|0,a=a+Math.imul(C,nt)|0,n=n+Math.imul(T,at)|0,i=(i=i+Math.imul(T,ot)|0)+Math.imul(E,at)|0,a=a+Math.imul(E,ot)|0,n=n+Math.imul(M,lt)|0,i=(i=i+Math.imul(M,ct)|0)+Math.imul(k,lt)|0,a=a+Math.imul(k,ct)|0,n=n+Math.imul(x,ft)|0,i=(i=i+Math.imul(x,ht)|0)+Math.imul(_,ft)|0,a=a+Math.imul(_,ht)|0;var Et=(c+(n=n+Math.imul(g,pt)|0)|0)+((8191&(i=(i=i+Math.imul(g,mt)|0)+Math.imul(y,pt)|0))<<13)|0;c=((a=a+Math.imul(y,mt)|0)+(i>>>13)|0)+(Et>>>26)|0,Et&=67108863,n=Math.imul(F,J),i=(i=Math.imul(F,K))+Math.imul(j,J)|0,a=Math.imul(j,K),n=n+Math.imul(I,$)|0,i=(i=i+Math.imul(I,tt)|0)+Math.imul(R,$)|0,a=a+Math.imul(R,tt)|0,n=n+Math.imul(z,rt)|0,i=(i=i+Math.imul(z,nt)|0)+Math.imul(O,rt)|0,a=a+Math.imul(O,nt)|0,n=n+Math.imul(L,at)|0,i=(i=i+Math.imul(L,ot)|0)+Math.imul(C,at)|0,a=a+Math.imul(C,ot)|0,n=n+Math.imul(T,lt)|0,i=(i=i+Math.imul(T,ct)|0)+Math.imul(E,lt)|0,a=a+Math.imul(E,ct)|0,n=n+Math.imul(M,ft)|0,i=(i=i+Math.imul(M,ht)|0)+Math.imul(k,ft)|0,a=a+Math.imul(k,ht)|0;var St=(c+(n=n+Math.imul(x,pt)|0)|0)+((8191&(i=(i=i+Math.imul(x,mt)|0)+Math.imul(_,pt)|0))<<13)|0;c=((a=a+Math.imul(_,mt)|0)+(i>>>13)|0)+(St>>>26)|0,St&=67108863,n=Math.imul(F,$),i=(i=Math.imul(F,tt))+Math.imul(j,$)|0,a=Math.imul(j,tt),n=n+Math.imul(I,rt)|0,i=(i=i+Math.imul(I,nt)|0)+Math.imul(R,rt)|0,a=a+Math.imul(R,nt)|0,n=n+Math.imul(z,at)|0,i=(i=i+Math.imul(z,ot)|0)+Math.imul(O,at)|0,a=a+Math.imul(O,ot)|0,n=n+Math.imul(L,lt)|0,i=(i=i+Math.imul(L,ct)|0)+Math.imul(C,lt)|0,a=a+Math.imul(C,ct)|0,n=n+Math.imul(T,ft)|0,i=(i=i+Math.imul(T,ht)|0)+Math.imul(E,ft)|0,a=a+Math.imul(E,ht)|0;var Lt=(c+(n=n+Math.imul(M,pt)|0)|0)+((8191&(i=(i=i+Math.imul(M,mt)|0)+Math.imul(k,pt)|0))<<13)|0;c=((a=a+Math.imul(k,mt)|0)+(i>>>13)|0)+(Lt>>>26)|0,Lt&=67108863,n=Math.imul(F,rt),i=(i=Math.imul(F,nt))+Math.imul(j,rt)|0,a=Math.imul(j,nt),n=n+Math.imul(I,at)|0,i=(i=i+Math.imul(I,ot)|0)+Math.imul(R,at)|0,a=a+Math.imul(R,ot)|0,n=n+Math.imul(z,lt)|0,i=(i=i+Math.imul(z,ct)|0)+Math.imul(O,lt)|0,a=a+Math.imul(O,ct)|0,n=n+Math.imul(L,ft)|0,i=(i=i+Math.imul(L,ht)|0)+Math.imul(C,ft)|0,a=a+Math.imul(C,ht)|0;var Ct=(c+(n=n+Math.imul(T,pt)|0)|0)+((8191&(i=(i=i+Math.imul(T,mt)|0)+Math.imul(E,pt)|0))<<13)|0;c=((a=a+Math.imul(E,mt)|0)+(i>>>13)|0)+(Ct>>>26)|0,Ct&=67108863,n=Math.imul(F,at),i=(i=Math.imul(F,ot))+Math.imul(j,at)|0,a=Math.imul(j,ot),n=n+Math.imul(I,lt)|0,i=(i=i+Math.imul(I,ct)|0)+Math.imul(R,lt)|0,a=a+Math.imul(R,ct)|0,n=n+Math.imul(z,ft)|0,i=(i=i+Math.imul(z,ht)|0)+Math.imul(O,ft)|0,a=a+Math.imul(O,ht)|0;var Pt=(c+(n=n+Math.imul(L,pt)|0)|0)+((8191&(i=(i=i+Math.imul(L,mt)|0)+Math.imul(C,pt)|0))<<13)|0;c=((a=a+Math.imul(C,mt)|0)+(i>>>13)|0)+(Pt>>>26)|0,Pt&=67108863,n=Math.imul(F,lt),i=(i=Math.imul(F,ct))+Math.imul(j,lt)|0,a=Math.imul(j,ct),n=n+Math.imul(I,ft)|0,i=(i=i+Math.imul(I,ht)|0)+Math.imul(R,ft)|0,a=a+Math.imul(R,ht)|0;var zt=(c+(n=n+Math.imul(z,pt)|0)|0)+((8191&(i=(i=i+Math.imul(z,mt)|0)+Math.imul(O,pt)|0))<<13)|0;c=((a=a+Math.imul(O,mt)|0)+(i>>>13)|0)+(zt>>>26)|0,zt&=67108863,n=Math.imul(F,ft),i=(i=Math.imul(F,ht))+Math.imul(j,ft)|0,a=Math.imul(j,ht);var Ot=(c+(n=n+Math.imul(I,pt)|0)|0)+((8191&(i=(i=i+Math.imul(I,mt)|0)+Math.imul(R,pt)|0))<<13)|0;c=((a=a+Math.imul(R,mt)|0)+(i>>>13)|0)+(Ot>>>26)|0,Ot&=67108863;var Dt=(c+(n=Math.imul(F,pt))|0)+((8191&(i=(i=Math.imul(F,mt))+Math.imul(j,pt)|0))<<13)|0;return c=((a=Math.imul(j,mt))+(i>>>13)|0)+(Dt>>>26)|0,Dt&=67108863,l[0]=vt,l[1]=gt,l[2]=yt,l[3]=bt,l[4]=xt,l[5]=_t,l[6]=wt,l[7]=Mt,l[8]=kt,l[9]=At,l[10]=Tt,l[11]=Et,l[12]=St,l[13]=Lt,l[14]=Ct,l[15]=Pt,l[16]=zt,l[17]=Ot,l[18]=Dt,0!==c&&(l[19]=c,r.length++),r};function p(t,e,r){return(new m).mulp(t,e,r)}function m(t,e){this.x=t,this.y=e}Math.imul||(d=h),a.prototype.mulTo=function(t,e){var r=this.length+t.length;return 10===this.length&&10===t.length?d(this,t,e):r<63?h(this,t,e):r<1024?function(t,e,r){r.negative=e.negative^t.negative,r.length=t.length+e.length;for(var n=0,i=0,a=0;a<r.length-1;a++){var o=i;i=0;for(var s=67108863&n,l=Math.min(a,e.length-1),c=Math.max(0,a-t.length+1);c<=l;c++){var u=a-c,f=(0|t.words[u])*(0|e.words[c]),h=67108863&f;s=67108863&(h=h+s|0),i+=(o=(o=o+(f/67108864|0)|0)+(h>>>26)|0)>>>26,o&=67108863}r.words[a]=s,n=o,o=i}return 0!==n?r.words[a]=n:r.length--,r.strip()}(this,t,e):p(this,t,e)},m.prototype.makeRBT=function(t){for(var e=new Array(t),r=a.prototype._countBits(t)-1,n=0;n<t;n++)e[n]=this.revBin(n,r,t);return e},m.prototype.revBin=function(t,e,r){if(0===t||t===r-1)return t;for(var n=0,i=0;i<e;i++)n|=(1&t)<<e-i-1,t>>=1;return n},m.prototype.permute=function(t,e,r,n,i,a){for(var o=0;o<a;o++)n[o]=e[t[o]],i[o]=r[t[o]]},m.prototype.transform=function(t,e,r,n,i,a){this.permute(a,t,e,r,n,i);for(var o=1;o<i;o<<=1)for(var s=o<<1,l=Math.cos(2*Math.PI/s),c=Math.sin(2*Math.PI/s),u=0;u<i;u+=s)for(var f=l,h=c,d=0;d<o;d++){var p=r[u+d],m=n[u+d],v=r[u+d+o],g=n[u+d+o],y=f*v-h*g;g=f*g+h*v,v=y,r[u+d]=p+v,n[u+d]=m+g,r[u+d+o]=p-v,n[u+d+o]=m-g,d!==s&&(y=l*f-c*h,h=l*h+c*f,f=y)}},m.prototype.guessLen13b=function(t,e){var r=1|Math.max(e,t),n=1&r,i=0;for(r=r/2|0;r;r>>>=1)i++;return 1<<i+1+n},m.prototype.conjugate=function(t,e,r){if(!(r<=1))for(var n=0;n<r/2;n++){var i=t[n];t[n]=t[r-n-1],t[r-n-1]=i,i=e[n],e[n]=-e[r-n-1],e[r-n-1]=-i}},m.prototype.normalize13b=function(t,e){for(var r=0,n=0;n<e/2;n++){var i=8192*Math.round(t[2*n+1]/e)+Math.round(t[2*n]/e)+r;t[n]=67108863&i,r=i<67108864?0:i/67108864|0}return t},m.prototype.convert13b=function(t,e,r,i){for(var a=0,o=0;o<e;o++)a+=0|t[o],r[2*o]=8191&a,a>>>=13,r[2*o+1]=8191&a,a>>>=13;for(o=2*e;o<i;++o)r[o]=0;n(0===a),n(0==(-8192&a))},m.prototype.stub=function(t){for(var e=new Array(t),r=0;r<t;r++)e[r]=0;return e},m.prototype.mulp=function(t,e,r){var n=2*this.guessLen13b(t.length,e.length),i=this.makeRBT(n),a=this.stub(n),o=new Array(n),s=new Array(n),l=new Array(n),c=new Array(n),u=new Array(n),f=new Array(n),h=r.words;h.length=n,this.convert13b(t.words,t.length,o,n),this.convert13b(e.words,e.length,c,n),this.transform(o,a,s,l,n,i),this.transform(c,a,u,f,n,i);for(var d=0;d<n;d++){var p=s[d]*u[d]-l[d]*f[d];l[d]=s[d]*f[d]+l[d]*u[d],s[d]=p}return this.conjugate(s,l,n),this.transform(s,l,h,a,n,i),this.conjugate(h,a,n),this.normalize13b(h,n),r.negative=t.negative^e.negative,r.length=t.length+e.length,r.strip()},a.prototype.mul=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),this.mulTo(t,e)},a.prototype.mulf=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),p(this,t,e)},a.prototype.imul=function(t){return this.clone().mulTo(t,this)},a.prototype.imuln=function(t){n("number"==typeof t),n(t<67108864);for(var e=0,r=0;r<this.length;r++){var i=(0|this.words[r])*t,a=(67108863&i)+(67108863&e);e>>=26,e+=i/67108864|0,e+=a>>>26,this.words[r]=67108863&a}return 0!==e&&(this.words[r]=e,this.length++),this},a.prototype.muln=function(t){return this.clone().imuln(t)},a.prototype.sqr=function(){return this.mul(this)},a.prototype.isqr=function(){return this.imul(this.clone())},a.prototype.pow=function(t){var e=function(t){for(var e=new Array(t.bitLength()),r=0;r<e.length;r++){var n=r/26|0,i=r%26;e[r]=(t.words[n]&1<<i)>>>i}return e}(t);if(0===e.length)return new a(1);for(var r=this,n=0;n<e.length&&0===e[n];n++,r=r.sqr());if(++n<e.length)for(var i=r.sqr();n<e.length;n++,i=i.sqr())0!==e[n]&&(r=r.mul(i));return r},a.prototype.iushln=function(t){n("number"==typeof t&&t>=0);var e,r=t%26,i=(t-r)/26,a=67108863>>>26-r<<26-r;if(0!==r){var o=0;for(e=0;e<this.length;e++){var s=this.words[e]&a,l=(0|this.words[e])-s<<r;this.words[e]=l|o,o=s>>>26-r}o&&(this.words[e]=o,this.length++)}if(0!==i){for(e=this.length-1;e>=0;e--)this.words[e+i]=this.words[e];for(e=0;e<i;e++)this.words[e]=0;this.length+=i}return this.strip()},a.prototype.ishln=function(t){return n(0===this.negative),this.iushln(t)},a.prototype.iushrn=function(t,e,r){var i;n("number"==typeof t&&t>=0),i=e?(e-e%26)/26:0;var a=t%26,o=Math.min((t-a)/26,this.length),s=67108863^67108863>>>a<<a,l=r;if(i-=o,i=Math.max(0,i),l){for(var c=0;c<o;c++)l.words[c]=this.words[c];l.length=o}if(0===o);else if(this.length>o)for(this.length-=o,c=0;c<this.length;c++)this.words[c]=this.words[c+o];else this.words[0]=0,this.length=1;var u=0;for(c=this.length-1;c>=0&&(0!==u||c>=i);c--){var f=0|this.words[c];this.words[c]=u<<26-a|f>>>a,u=f&s}return l&&0!==u&&(l.words[l.length++]=u),0===this.length&&(this.words[0]=0,this.length=1),this.strip()},a.prototype.ishrn=function(t,e,r){return n(0===this.negative),this.iushrn(t,e,r)},a.prototype.shln=function(t){return this.clone().ishln(t)},a.prototype.ushln=function(t){return this.clone().iushln(t)},a.prototype.shrn=function(t){return this.clone().ishrn(t)},a.prototype.ushrn=function(t){return this.clone().iushrn(t)},a.prototype.testn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26,i=1<<e;return!(this.length<=r)&&!!(this.words[r]&i)},a.prototype.imaskn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26;if(n(0===this.negative,"imaskn works only with positive numbers"),this.length<=r)return this;if(0!==e&&r++,this.length=Math.min(r,this.length),0!==e){var i=67108863^67108863>>>e<<e;this.words[this.length-1]&=i}return this.strip()},a.prototype.maskn=function(t){return this.clone().imaskn(t)},a.prototype.iaddn=function(t){return n("number"==typeof t),n(t<67108864),t<0?this.isubn(-t):0!==this.negative?1===this.length&&(0|this.words[0])<t?(this.words[0]=t-(0|this.words[0]),this.negative=0,this):(this.negative=0,this.isubn(t),this.negative=1,this):this._iaddn(t)},a.prototype._iaddn=function(t){this.words[0]+=t;for(var e=0;e<this.length&&this.words[e]>=67108864;e++)this.words[e]-=67108864,e===this.length-1?this.words[e+1]=1:this.words[e+1]++;return this.length=Math.max(this.length,e+1),this},a.prototype.isubn=function(t){if(n("number"==typeof t),n(t<67108864),t<0)return this.iaddn(-t);if(0!==this.negative)return this.negative=0,this.iaddn(t),this.negative=1,this;if(this.words[0]-=t,1===this.length&&this.words[0]<0)this.words[0]=-this.words[0],this.negative=1;else for(var e=0;e<this.length&&this.words[e]<0;e++)this.words[e]+=67108864,this.words[e+1]-=1;return this.strip()},a.prototype.addn=function(t){return this.clone().iaddn(t)},a.prototype.subn=function(t){return this.clone().isubn(t)},a.prototype.iabs=function(){return this.negative=0,this},a.prototype.abs=function(){return this.clone().iabs()},a.prototype._ishlnsubmul=function(t,e,r){var i,a,o=t.length+r;this._expand(o);var s=0;for(i=0;i<t.length;i++){a=(0|this.words[i+r])+s;var l=(0|t.words[i])*e;s=((a-=67108863&l)>>26)-(l/67108864|0),this.words[i+r]=67108863&a}for(;i<this.length-r;i++)s=(a=(0|this.words[i+r])+s)>>26,this.words[i+r]=67108863&a;if(0===s)return this.strip();for(n(-1===s),s=0,i=0;i<this.length;i++)s=(a=-(0|this.words[i])+s)>>26,this.words[i]=67108863&a;return this.negative=1,this.strip()},a.prototype._wordDiv=function(t,e){var r=(this.length,t.length),n=this.clone(),i=t,o=0|i.words[i.length-1];0!==(r=26-this._countBits(o))&&(i=i.ushln(r),n.iushln(r),o=0|i.words[i.length-1]);var s,l=n.length-i.length;if("mod"!==e){(s=new a(null)).length=l+1,s.words=new Array(s.length);for(var c=0;c<s.length;c++)s.words[c]=0}var u=n.clone()._ishlnsubmul(i,1,l);0===u.negative&&(n=u,s&&(s.words[l]=1));for(var f=l-1;f>=0;f--){var h=67108864*(0|n.words[i.length+f])+(0|n.words[i.length+f-1]);for(h=Math.min(h/o|0,67108863),n._ishlnsubmul(i,h,f);0!==n.negative;)h--,n.negative=0,n._ishlnsubmul(i,1,f),n.isZero()||(n.negative^=1);s&&(s.words[f]=h)}return s&&s.strip(),n.strip(),"div"!==e&&0!==r&&n.iushrn(r),{div:s||null,mod:n}},a.prototype.divmod=function(t,e,r){return n(!t.isZero()),this.isZero()?{div:new a(0),mod:new a(0)}:0!==this.negative&&0===t.negative?(s=this.neg().divmod(t,e),"mod"!==e&&(i=s.div.neg()),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.iadd(t)),{div:i,mod:o}):0===this.negative&&0!==t.negative?(s=this.divmod(t.neg(),e),"mod"!==e&&(i=s.div.neg()),{div:i,mod:s.mod}):0!=(this.negative&t.negative)?(s=this.neg().divmod(t.neg(),e),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.isub(t)),{div:s.div,mod:o}):t.length>this.length||this.cmp(t)<0?{div:new a(0),mod:this}:1===t.length?"div"===e?{div:this.divn(t.words[0]),mod:null}:"mod"===e?{div:null,mod:new a(this.modn(t.words[0]))}:{div:this.divn(t.words[0]),mod:new a(this.modn(t.words[0]))}:this._wordDiv(t,e);var i,o,s},a.prototype.div=function(t){return this.divmod(t,"div",!1).div},a.prototype.mod=function(t){return this.divmod(t,"mod",!1).mod},a.prototype.umod=function(t){return this.divmod(t,"mod",!0).mod},a.prototype.divRound=function(t){var e=this.divmod(t);if(e.mod.isZero())return e.div;var r=0!==e.div.negative?e.mod.isub(t):e.mod,n=t.ushrn(1),i=t.andln(1),a=r.cmp(n);return a<0||1===i&&0===a?e.div:0!==e.div.negative?e.div.isubn(1):e.div.iaddn(1)},a.prototype.modn=function(t){n(t<=67108863);for(var e=(1<<26)%t,r=0,i=this.length-1;i>=0;i--)r=(e*r+(0|this.words[i]))%t;return r},a.prototype.idivn=function(t){n(t<=67108863);for(var e=0,r=this.length-1;r>=0;r--){var i=(0|this.words[r])+67108864*e;this.words[r]=i/t|0,e=i%t}return this.strip()},a.prototype.divn=function(t){return this.clone().idivn(t)},a.prototype.egcd=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i=new a(1),o=new a(0),s=new a(0),l=new a(1),c=0;e.isEven()&&r.isEven();)e.iushrn(1),r.iushrn(1),++c;for(var u=r.clone(),f=e.clone();!e.isZero();){for(var h=0,d=1;0==(e.words[0]&d)&&h<26;++h,d<<=1);if(h>0)for(e.iushrn(h);h-- >0;)(i.isOdd()||o.isOdd())&&(i.iadd(u),o.isub(f)),i.iushrn(1),o.iushrn(1);for(var p=0,m=1;0==(r.words[0]&m)&&p<26;++p,m<<=1);if(p>0)for(r.iushrn(p);p-- >0;)(s.isOdd()||l.isOdd())&&(s.iadd(u),l.isub(f)),s.iushrn(1),l.iushrn(1);e.cmp(r)>=0?(e.isub(r),i.isub(s),o.isub(l)):(r.isub(e),s.isub(i),l.isub(o))}return{a:s,b:l,gcd:r.iushln(c)}},a.prototype._invmp=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i,o=new a(1),s=new a(0),l=r.clone();e.cmpn(1)>0&&r.cmpn(1)>0;){for(var c=0,u=1;0==(e.words[0]&u)&&c<26;++c,u<<=1);if(c>0)for(e.iushrn(c);c-- >0;)o.isOdd()&&o.iadd(l),o.iushrn(1);for(var f=0,h=1;0==(r.words[0]&h)&&f<26;++f,h<<=1);if(f>0)for(r.iushrn(f);f-- >0;)s.isOdd()&&s.iadd(l),s.iushrn(1);e.cmp(r)>=0?(e.isub(r),o.isub(s)):(r.isub(e),s.isub(o))}return(i=0===e.cmpn(1)?o:s).cmpn(0)<0&&i.iadd(t),i},a.prototype.gcd=function(t){if(this.isZero())return t.abs();if(t.isZero())return this.abs();var e=this.clone(),r=t.clone();e.negative=0,r.negative=0;for(var n=0;e.isEven()&&r.isEven();n++)e.iushrn(1),r.iushrn(1);for(;;){for(;e.isEven();)e.iushrn(1);for(;r.isEven();)r.iushrn(1);var i=e.cmp(r);if(i<0){var a=e;e=r,r=a}else if(0===i||0===r.cmpn(1))break;e.isub(r)}return r.iushln(n)},a.prototype.invm=function(t){return this.egcd(t).a.umod(t)},a.prototype.isEven=function(){return 0==(1&this.words[0])},a.prototype.isOdd=function(){return 1==(1&this.words[0])},a.prototype.andln=function(t){return this.words[0]&t},a.prototype.bincn=function(t){n("number"==typeof t);var e=t%26,r=(t-e)/26,i=1<<e;if(this.length<=r)return this._expand(r+1),this.words[r]|=i,this;for(var a=i,o=r;0!==a&&o<this.length;o++){var s=0|this.words[o];a=(s+=a)>>>26,s&=67108863,this.words[o]=s}return 0!==a&&(this.words[o]=a,this.length++),this},a.prototype.isZero=function(){return 1===this.length&&0===this.words[0]},a.prototype.cmpn=function(t){var e,r=t<0;if(0!==this.negative&&!r)return-1;if(0===this.negative&&r)return 1;if(this.strip(),this.length>1)e=1;else{r&&(t=-t),n(t<=67108863,"Number is too big");var i=0|this.words[0];e=i===t?0:i<t?-1:1}return 0!==this.negative?0|-e:e},a.prototype.cmp=function(t){if(0!==this.negative&&0===t.negative)return-1;if(0===this.negative&&0!==t.negative)return 1;var e=this.ucmp(t);return 0!==this.negative?0|-e:e},a.prototype.ucmp=function(t){if(this.length>t.length)return 1;if(this.length<t.length)return-1;for(var e=0,r=this.length-1;r>=0;r--){var n=0|this.words[r],i=0|t.words[r];if(n!==i){n<i?e=-1:n>i&&(e=1);break}}return e},a.prototype.gtn=function(t){return 1===this.cmpn(t)},a.prototype.gt=function(t){return 1===this.cmp(t)},a.prototype.gten=function(t){return this.cmpn(t)>=0},a.prototype.gte=function(t){return this.cmp(t)>=0},a.prototype.ltn=function(t){return-1===this.cmpn(t)},a.prototype.lt=function(t){return-1===this.cmp(t)},a.prototype.lten=function(t){return this.cmpn(t)<=0},a.prototype.lte=function(t){return this.cmp(t)<=0},a.prototype.eqn=function(t){return 0===this.cmpn(t)},a.prototype.eq=function(t){return 0===this.cmp(t)},a.red=function(t){return new w(t)},a.prototype.toRed=function(t){return n(!this.red,"Already a number in reduction context"),n(0===this.negative,"red works only with positives"),t.convertTo(this)._forceRed(t)},a.prototype.fromRed=function(){return n(this.red,"fromRed works only with numbers in reduction context"),this.red.convertFrom(this)},a.prototype._forceRed=function(t){return this.red=t,this},a.prototype.forceRed=function(t){return n(!this.red,"Already a number in reduction context"),this._forceRed(t)},a.prototype.redAdd=function(t){return n(this.red,"redAdd works only with red numbers"),this.red.add(this,t)},a.prototype.redIAdd=function(t){return n(this.red,"redIAdd works only with red numbers"),this.red.iadd(this,t)},a.prototype.redSub=function(t){return n(this.red,"redSub works only with red numbers"),this.red.sub(this,t)},a.prototype.redISub=function(t){return n(this.red,"redISub works only with red numbers"),this.red.isub(this,t)},a.prototype.redShl=function(t){return n(this.red,"redShl works only with red numbers"),this.red.shl(this,t)},a.prototype.redMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.mul(this,t)},a.prototype.redIMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.imul(this,t)},a.prototype.redSqr=function(){return n(this.red,"redSqr works only with red numbers"),this.red._verify1(this),this.red.sqr(this)},a.prototype.redISqr=function(){return n(this.red,"redISqr works only with red numbers"),this.red._verify1(this),this.red.isqr(this)},a.prototype.redSqrt=function(){return n(this.red,"redSqrt works only with red numbers"),this.red._verify1(this),this.red.sqrt(this)},a.prototype.redInvm=function(){return n(this.red,"redInvm works only with red numbers"),this.red._verify1(this),this.red.invm(this)},a.prototype.redNeg=function(){return n(this.red,"redNeg works only with red numbers"),this.red._verify1(this),this.red.neg(this)},a.prototype.redPow=function(t){return n(this.red&&!t.red,"redPow(normalNum)"),this.red._verify1(this),this.red.pow(this,t)};var v={k256:null,p224:null,p192:null,p25519:null};function g(t,e){this.name=t,this.p=new a(e,16),this.n=this.p.bitLength(),this.k=new a(1).iushln(this.n).isub(this.p),this.tmp=this._tmp()}function y(){g.call(this,"k256","ffffffff ffffffff ffffffff ffffffff ffffffff ffffffff fffffffe fffffc2f")}function b(){g.call(this,"p224","ffffffff ffffffff ffffffff ffffffff 00000000 00000000 00000001")}function x(){g.call(this,"p192","ffffffff ffffffff ffffffff fffffffe ffffffff ffffffff")}function _(){g.call(this,"25519","7fffffffffffffff ffffffffffffffff ffffffffffffffff ffffffffffffffed")}function w(t){if("string"==typeof t){var e=a._prime(t);this.m=e.p,this.prime=e}else n(t.gtn(1),"modulus must be greater than 1"),this.m=t,this.prime=null}function M(t){w.call(this,t),this.shift=this.m.bitLength(),this.shift%26!=0&&(this.shift+=26-this.shift%26),this.r=new a(1).iushln(this.shift),this.r2=this.imod(this.r.sqr()),this.rinv=this.r._invmp(this.m),this.minv=this.rinv.mul(this.r).isubn(1).div(this.m),this.minv=this.minv.umod(this.r),this.minv=this.r.sub(this.minv)}g.prototype._tmp=function(){var t=new a(null);return t.words=new Array(Math.ceil(this.n/13)),t},g.prototype.ireduce=function(t){var e,r=t;do{this.split(r,this.tmp),e=(r=(r=this.imulK(r)).iadd(this.tmp)).bitLength()}while(e>this.n);var n=e<this.n?-1:r.ucmp(this.p);return 0===n?(r.words[0]=0,r.length=1):n>0?r.isub(this.p):r.strip(),r},g.prototype.split=function(t,e){t.iushrn(this.n,0,e)},g.prototype.imulK=function(t){return t.imul(this.k)},i(y,g),y.prototype.split=function(t,e){for(var r=Math.min(t.length,9),n=0;n<r;n++)e.words[n]=t.words[n];if(e.length=r,t.length<=9)return t.words[0]=0,void(t.length=1);var i=t.words[9];for(e.words[e.length++]=4194303&i,n=10;n<t.length;n++){var a=0|t.words[n];t.words[n-10]=(4194303&a)<<4|i>>>22,i=a}i>>>=22,t.words[n-10]=i,0===i&&t.length>10?t.length-=10:t.length-=9},y.prototype.imulK=function(t){t.words[t.length]=0,t.words[t.length+1]=0,t.length+=2;for(var e=0,r=0;r<t.length;r++){var n=0|t.words[r];e+=977*n,t.words[r]=67108863&e,e=64*n+(e/67108864|0)}return 0===t.words[t.length-1]&&(t.length--,0===t.words[t.length-1]&&t.length--),t},i(b,g),i(x,g),i(_,g),_.prototype.imulK=function(t){for(var e=0,r=0;r<t.length;r++){var n=19*(0|t.words[r])+e,i=67108863&n;n>>>=26,t.words[r]=i,e=n}return 0!==e&&(t.words[t.length++]=e),t},a._prime=function(t){if(v[t])return v[t];var e;if("k256"===t)e=new y;else if("p224"===t)e=new b;else if("p192"===t)e=new x;else{if("p25519"!==t)throw new Error("Unknown prime "+t);e=new _}return v[t]=e,e},w.prototype._verify1=function(t){n(0===t.negative,"red works only with positives"),n(t.red,"red works only with red numbers")},w.prototype._verify2=function(t,e){n(0==(t.negative|e.negative),"red works only with positives"),n(t.red&&t.red===e.red,"red works only with red numbers")},w.prototype.imod=function(t){return this.prime?this.prime.ireduce(t)._forceRed(this):t.umod(this.m)._forceRed(this)},w.prototype.neg=function(t){return t.isZero()?t.clone():this.m.sub(t)._forceRed(this)},w.prototype.add=function(t,e){this._verify2(t,e);var r=t.add(e);return r.cmp(this.m)>=0&&r.isub(this.m),r._forceRed(this)},w.prototype.iadd=function(t,e){this._verify2(t,e);var r=t.iadd(e);return r.cmp(this.m)>=0&&r.isub(this.m),r},w.prototype.sub=function(t,e){this._verify2(t,e);var r=t.sub(e);return r.cmpn(0)<0&&r.iadd(this.m),r._forceRed(this)},w.prototype.isub=function(t,e){this._verify2(t,e);var r=t.isub(e);return r.cmpn(0)<0&&r.iadd(this.m),r},w.prototype.shl=function(t,e){return this._verify1(t),this.imod(t.ushln(e))},w.prototype.imul=function(t,e){return this._verify2(t,e),this.imod(t.imul(e))},w.prototype.mul=function(t,e){return this._verify2(t,e),this.imod(t.mul(e))},w.prototype.isqr=function(t){return this.imul(t,t.clone())},w.prototype.sqr=function(t){return this.mul(t,t)},w.prototype.sqrt=function(t){if(t.isZero())return t.clone();var e=this.m.andln(3);if(n(e%2==1),3===e){var r=this.m.add(new a(1)).iushrn(2);return this.pow(t,r)}for(var i=this.m.subn(1),o=0;!i.isZero()&&0===i.andln(1);)o++,i.iushrn(1);n(!i.isZero());var s=new a(1).toRed(this),l=s.redNeg(),c=this.m.subn(1).iushrn(1),u=this.m.bitLength();for(u=new a(2*u*u).toRed(this);0!==this.pow(u,c).cmp(l);)u.redIAdd(l);for(var f=this.pow(u,i),h=this.pow(t,i.addn(1).iushrn(1)),d=this.pow(t,i),p=o;0!==d.cmp(s);){for(var m=d,v=0;0!==m.cmp(s);v++)m=m.redSqr();n(v<p);var g=this.pow(f,new a(1).iushln(p-v-1));h=h.redMul(g),f=g.redSqr(),d=d.redMul(f),p=v}return h},w.prototype.invm=function(t){var e=t._invmp(this.m);return 0!==e.negative?(e.negative=0,this.imod(e).redNeg()):this.imod(e)},w.prototype.pow=function(t,e){if(e.isZero())return new a(1).toRed(this);if(0===e.cmpn(1))return t.clone();var r=new Array(16);r[0]=new a(1).toRed(this),r[1]=t;for(var n=2;n<r.length;n++)r[n]=this.mul(r[n-1],t);var i=r[0],o=0,s=0,l=e.bitLength()%26;for(0===l&&(l=26),n=e.length-1;n>=0;n--){for(var c=e.words[n],u=l-1;u>=0;u--){var f=c>>u&1;i!==r[0]&&(i=this.sqr(i)),0!==f||0!==o?(o<<=1,o|=f,(4===++s||0===n&&0===u)&&(i=this.mul(i,r[o]),s=0,o=0)):s=0}l=26}return i},w.prototype.convertTo=function(t){var e=t.umod(this.m);return e===t?e.clone():e},w.prototype.convertFrom=function(t){var e=t.clone();return e.red=null,e},a.mont=function(t){return new M(t)},i(M,w),M.prototype.convertTo=function(t){return this.imod(t.ushln(this.shift))},M.prototype.convertFrom=function(t){var e=this.imod(t.mul(this.rinv));return e.red=null,e},M.prototype.imul=function(t,e){if(t.isZero()||e.isZero())return t.words[0]=0,t.length=1,t;var r=t.imul(e),n=r.maskn(this.shift).mul(this.minv).imaskn(this.shift).mul(this.m),i=r.isub(n).iushrn(this.shift),a=i;return i.cmp(this.m)>=0?a=i.isub(this.m):i.cmpn(0)<0&&(a=i.iadd(this.m)),a._forceRed(this)},M.prototype.mul=function(t,e){if(t.isZero()||e.isZero())return new a(0)._forceRed(this);var 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f=r-1;f>=0;--f)n.push(a(l[f],c[f],n[o]+u*i[o])),i.push(0),o+=1}}},{"binary-search-bounds":70,"cubic-hermite":115}],143:[function(t,e,r){var n=t("dtype");e.exports=function(t,e,r){if(!t)throw new TypeError("must specify data as first parameter");if(r=0|+(r||0),Array.isArray(t)&&Array.isArray(t[0])){var i=t[0].length,a=t.length*i;e&&"string"!=typeof e||(e=new(n(e||"float32"))(a+r));var o=e.length-r;if(a!==o)throw new Error("source length "+a+" ("+i+"x"+t.length+") does not match destination length "+o);for(var s=0,l=r;s<t.length;s++)for(var c=0;c<i;c++)e[l++]=t[s][c]}else if(e&&"string"!=typeof e)e.set(t,r);else{var u=n(e||"float32");0===r?e=new u(t):(e=new u(t.length+r)).set(t,r)}return e}},{dtype:133}],144:[function(t,e,r){"use strict";e.exports=function(t){return new c(t||p,null)};var n=0,i=1;function a(t,e,r,n,i,a){this._color=t,this.key=e,this.value=r,this.left=n,this.right=i,this._count=a}function o(t){return new a(t._color,t.key,t.value,t.left,t.right,t._count)}function 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e=this.root,r=[];;){if(r.push(e),e.left){if(t<e.left._count){e=e.left;continue}t-=e.left._count}if(!t)return new f(this,r);if(t-=1,!e.right)break;if(t>=e.right._count)break;e=e.right}return new f(this,[])},u.ge=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<=0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.gt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.lt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.le=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>=0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.find=function(t){for(var e=this._compare,r=this.root,n=[];r;){var i=e(t,r.key);if(n.push(r),0===i)return new 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a(r._color,r.key,r.value,r.left,e[u+1],r._count)}if((r=e[e.length-1]).left&&r.right){var f=e.length;for(r=r.left;r.right;)e.push(r),r=r.right;var h=e[f-1];e.push(new a(r._color,h.key,h.value,r.left,r.right,r._count)),e[f-1].key=r.key,e[f-1].value=r.value;for(u=e.length-2;u>=f;--u)r=e[u],e[u]=new a(r._color,r.key,r.value,r.left,e[u+1],r._count);e[f-1].left=e[f]}if((r=e[e.length-1])._color===n){var p=e[e.length-2];p.left===r?p.left=null:p.right===r&&(p.right=null),e.pop();for(u=0;u<e.length;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(r.left||r.right){r.left?d(r,r.left):r.right&&d(r,r.right),r._color=i;for(u=0;u<e.length-1;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(1===e.length)return new c(this.tree._compare,null);for(u=0;u<e.length;++u)e[u]._count--;var m=e[e.length-2];return function(t){for(var e,r,a,c,u=t.length-1;u>=0;--u){if(e=t[u],0===u)return void(e._color=i);if((r=t[u-1]).left===e){if((a=r.right).right&&a.right._color===n)return c=(a=r.right=o(a)).right=o(a.right),r.right=a.left,a.left=r,a.right=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),void(t[u-1]=a);if(a.left&&a.left._color===n)return c=(a=r.right=o(a)).left=o(a.left),r.right=c.left,a.left=c.right,c.left=r,c.right=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).left===r?f.left=c:f.right=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.right=s(n,a));r.right=s(n,a);continue}a=o(a),r.right=a.left,a.left=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}else{if((a=r.left).left&&a.left._color===n)return c=(a=r.left=o(a)).left=o(a.left),r.left=a.right,a.right=r,a.left=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),void(t[u-1]=a);if(a.right&&a.right._color===n)return c=(a=r.left=o(a)).right=o(a.right),r.left=c.right,a.right=c.left,c.right=r,c.left=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).right===r?f.right=c:f.left=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.left=s(n,a));r.left=s(n,a);continue}var f;a=o(a),r.left=a.right,a.right=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}}}(e),m.left===r?m.left=null:m.right=null,new c(this.tree._compare,e[0])},Object.defineProperty(h,"key",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].key},enumerable:!0}),Object.defineProperty(h,"value",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].value},enumerable:!0}),Object.defineProperty(h,"index",{get:function(){var t=0,e=this._stack;if(0===e.length){var r=this.tree.root;return 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c(this.tree._compare,r[0])},h.prev=function(){var t=this._stack;if(0!==t.length){var e=t[t.length-1];if(e.left)for(e=e.left;e;)t.push(e),e=e.right;else for(t.pop();t.length>0&&t[t.length-1].left===e;)e=t[t.length-1],t.pop()}},Object.defineProperty(h,"hasPrev",{get:function(){var t=this._stack;if(0===t.length)return!1;if(t[t.length-1].left)return!0;for(var e=t.length-1;e>0;--e)if(t[e-1].right===t[e])return!0;return!1}})},{}],145:[function(t,e,r){var n=[.9999999999998099,676.5203681218851,-1259.1392167224028,771.3234287776531,-176.6150291621406,12.507343278686905,-.13857109526572012,9984369578019572e-21,1.5056327351493116e-7],i=607/128,a=[.9999999999999971,57.15623566586292,-59.59796035547549,14.136097974741746,-.4919138160976202,3399464998481189e-20,4652362892704858e-20,-9837447530487956e-20,.0001580887032249125,-.00021026444172410488,.00021743961811521265,-.0001643181065367639,8441822398385275e-20,-26190838401581408e-21,36899182659531625e-22];function o(t){if(t<0)return 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l=i.point(a.geometry[0][s],e,t.z2,t.x,t.y);if(l[0]!==-r&&l[0]!==e+r||l[1]!==-r&&l[1]!==e+r)return!1}return!0}l.prototype.options={maxZoom:14,indexMaxZoom:5,indexMaxPoints:1e5,solidChildren:!1,tolerance:3,extent:4096,buffer:64,debug:0},l.prototype.splitTile=function(t,e,r,n,i,o,l){for(var d=[t,e,r,n],p=this.options,m=p.debug,v=null;d.length;){n=d.pop(),r=d.pop(),e=d.pop(),t=d.pop();var g=1<<e,y=c(e,r,n),b=this.tiles[y],x=e===p.maxZoom?0:p.tolerance/(g*p.extent);if(!b&&(m>1&&console.time("creation"),b=this.tiles[y]=s(t,g,r,n,x,e===p.maxZoom),this.tileCoords.push({z:e,x:r,y:n}),m)){m>1&&(console.log("tile z%d-%d-%d (features: %d, points: %d, simplified: %d)",e,r,n,b.numFeatures,b.numPoints,b.numSimplified),console.timeEnd("creation"));var _="z"+e;this.stats[_]=(this.stats[_]||0)+1,this.total++}if(b.source=t,i){if(e===p.maxZoom||e===i)continue;var w=1<<i-e;if(r!==Math.floor(o/w)||n!==Math.floor(l/w))continue}else 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m=l("labels");l("labelFont")&&(m=!0),o("labelEnable"),a("labelSize"),a("labelPad"),c("labelColor"),o("lineEnable"),o("lineMirror"),a("lineWidth"),c("lineColor"),o("lineTickEnable"),o("lineTickMirror"),a("lineTickLength"),a("lineTickWidth"),c("lineTickColor"),o("gridEnable"),a("gridWidth"),c("gridColor"),o("zeroEnable"),c("zeroLineColor"),a("zeroLineWidth"),o("backgroundEnable"),c("backgroundColor"),this._text?this._text&&(m||u)&&this._text.update(this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont):this._text=n(this.gl,this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont),this._lines&&u&&(this._lines.dispose(),this._lines=null),this._lines||(this._lines=i(this.gl,this.bounds,this.ticks))};var d=[new h,new h,new h];function p(t,e,r,n,i){for(var a=t.primalOffset,o=t.primalMinor,s=t.mirrorOffset,l=t.mirrorMinor,c=n[e],u=0;u<3;++u)if(e!==u){var f=a,h=s,d=o,p=l;c&1<<u&&(f=s,h=a,d=l,p=o),f[u]=r[0][u],h[u]=r[1][u],i[u]>0?(d[u]=-1,p[u]=0):(d[u]=0,p[u]=1)}}var m=[0,0,0],v={model:l,view:l,projection:l};f.isOpaque=function(){return!0},f.isTransparent=function(){return!1},f.drawTransparent=function(t){};var g=[0,0,0],y=[0,0,0],b=[0,0,0];f.draw=function(t){t=t||v;for(var e=this.gl,r=t.model||l,n=t.view||l,i=t.projection||l,a=this.bounds,s=o(r,n,i,a),u=s.cubeEdges,f=s.axis,h=n[12],x=n[13],_=n[14],w=n[15],M=this.pixelRatio*(i[3]*h+i[7]*x+i[11]*_+i[15]*w)/e.drawingBufferHeight,k=0;k<3;++k)this.lastCubeProps.cubeEdges[k]=u[k],this.lastCubeProps.axis[k]=f[k];var A=d;for(k=0;k<3;++k)p(d[k],k,this.bounds,u,f);e=this.gl;var T=m;for(k=0;k<3;++k)this.backgroundEnable[k]?T[k]=f[k]:T[k]=0;this._background.draw(r,n,i,a,T,this.backgroundColor),this._lines.bind(r,n,i,this);for(k=0;k<3;++k){var E=[0,0,0];f[k]>0?E[k]=a[1][k]:E[k]=a[0][k];for(var S=0;S<2;++S){var L=(k+1+S)%3,C=(k+1+(1^S))%3;this.gridEnable[L]&&this._lines.drawGrid(L,C,this.bounds,E,this.gridColor[L],this.gridWidth[L]*this.pixelRatio)}for(S=0;S<2;++S){L=(k+1+S)%3,C=(k+1+(1^S))%3;this.zeroEnable[C]&&a[0][C]<=0&&a[1][C]>=0&&this._lines.drawZero(L,C,this.bounds,E,this.zeroLineColor[C],this.zeroLineWidth[C]*this.pixelRatio)}}for(k=0;k<3;++k){this.lineEnable[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].primalOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio),this.lineMirror[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].mirrorOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio);var P=c(g,A[k].primalMinor),z=c(y,A[k].mirrorMinor),O=this.lineTickLength;for(S=0;S<3;++S){var D=M/r[5*S];P[S]*=O[S]*D,z[S]*=O[S]*D}this.lineTickEnable[k]&&this._lines.drawAxisTicks(k,A[k].primalOffset,P,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio),this.lineTickMirror[k]&&this._lines.drawAxisTicks(k,A[k].mirrorOffset,z,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio)}this._lines.unbind(),this._text.bind(r,n,i,this.pixelRatio);for(k=0;k<3;++k){var I=A[k].primalMinor,R=c(b,A[k].primalOffset);for(S=0;S<3;++S)this.lineTickEnable[k]&&(R[S]+=M*I[S]*Math.max(this.lineTickLength[S],0)/r[5*S]);if(this.tickEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.tickPad[S]/r[5*S];this._text.drawTicks(k,this.tickSize[k],this.tickAngle[k],R,this.tickColor[k])}if(this.labelEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.labelPad[S]/r[5*S];R[k]+=.5*(a[0][k]+a[1][k]),this._text.drawLabel(k,this.labelSize[k],this.labelAngle[k],R,this.labelColor[k])}}this._text.unbind()},f.dispose=function(){this._text.dispose(),this._lines.dispose(),this._background.dispose(),this._lines=null,this._text=null,this._background=null,this.gl=null}},{"./lib/background.js":158,"./lib/cube.js":159,"./lib/lines.js":160,"./lib/text.js":162,"./lib/ticks.js":163}],158:[function(t,e,r){"use strict";e.exports=function(t){for(var e=[],r=[],s=0,l=0;l<3;++l)for(var c=(l+1)%3,u=(l+2)%3,f=[0,0,0],h=[0,0,0],d=-1;d<=1;d+=2){r.push(s,s+2,s+1,s+1,s+2,s+3),f[l]=d,h[l]=d;for(var p=-1;p<=1;p+=2){f[c]=p;for(var m=-1;m<=1;m+=2)f[u]=m,e.push(f[0],f[1],f[2],h[0],h[1],h[2]),s+=1}var v=c;c=u,u=v}var g=n(t,new Float32Array(e)),y=n(t,new Uint16Array(r),t.ELEMENT_ARRAY_BUFFER),b=i(t,[{buffer:g,type:t.FLOAT,size:3,offset:0,stride:24},{buffer:g,type:t.FLOAT,size:3,offset:12,stride:24}],y),x=a(t);return x.attributes.position.location=0,x.attributes.normal.location=1,new o(t,g,b,x)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").bg;function o(t,e,r,n){this.gl=t,this.buffer=e,this.vao=r,this.shader=n}var s=o.prototype;s.draw=function(t,e,r,n,i,a){for(var o=!1,s=0;s<3;++s)o=o||i[s];if(o){var l=this.gl;l.enable(l.POLYGON_OFFSET_FILL),l.polygonOffset(1,2),this.shader.bind(),this.shader.uniforms={model:t,view:e,projection:r,bounds:n,enable:i,colors:a},this.vao.bind(),this.vao.draw(this.gl.TRIANGLES,36),this.vao.unbind(),l.disable(l.POLYGON_OFFSET_FILL)}},s.dispose=function(){this.vao.dispose(),this.buffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],159:[function(t,e,r){"use strict";e.exports=function(t,e,r,a){i(s,e,t),i(s,r,s);for(var d=0,y=0;y<2;++y){u[2]=a[y][2];for(var b=0;b<2;++b){u[1]=a[b][1];for(var x=0;x<2;++x)u[0]=a[x][0],h(l[d],u,s),d+=1}}for(var _=-1,y=0;y<8;++y){for(var w=l[y][3],M=0;M<3;++M)c[y][M]=l[y][M]/w;w<0&&(_<0?_=y:c[y][2]<c[_][2]&&(_=y))}if(_<0){_=0;for(var k=0;k<3;++k){for(var A=(k+2)%3,T=(k+1)%3,E=-1,S=-1,L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T);o(c[C],c[P],c[z],f)<0||(L?E=1:S=1)}if(E<0||S<0)S>E&&(_|=1<<k);else{for(var L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T),O=p([l[C],l[P],l[z],l[C+(1<<A)+(1<<T)]]);L?E=O:S=O}S>E&&(_|=1<<k)}}}for(var D=7^_,I=-1,y=0;y<8;++y)y!==_&&y!==D&&(I<0?I=y:c[I][1]>c[y][1]&&(I=y));for(var R=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D){R<0&&(R=N);var T=c[N];T[0]<c[R][0]&&(R=N)}}for(var F=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D&&N!==R){F<0&&(F=N);var T=c[N];T[0]>c[F][0]&&(F=N)}}var j=m;j[0]=j[1]=j[2]=0,j[n.log2(R^I)]=I&R,j[n.log2(I^F)]=I&F;var B=7^F;B===_||B===D?(B=7^R,j[n.log2(F^B)]=B&F):j[n.log2(R^B)]=B&R;for(var U=v,V=_,k=0;k<3;++k)U[k]=V&1<<k?-1:1;return g};var n=t("bit-twiddle"),i=t("gl-mat4/multiply"),a=(t("gl-mat4/invert"),t("split-polygon")),o=t("robust-orientation"),s=new Array(16),l=(new Array(16),new Array(8)),c=new Array(8),u=new Array(3),f=[0,0,0];function h(t,e,r){for(var n=0;n<4;++n){t[n]=r[12+n];for(var i=0;i<3;++i)t[n]+=e[i]*r[4*i+n]}}!function(){for(var t=0;t<8;++t)l[t]=[1,1,1,1],c[t]=[1,1,1]}();var d=[[0,0,1,0,0],[0,0,-1,1,0],[0,-1,0,1,0],[0,1,0,1,0],[-1,0,0,1,0],[1,0,0,1,0]];function p(t){for(var e=0;e<d.length;++e)if((t=a.positive(t,d[e])).length<3)return 0;var r=t[0],n=r[0]/r[3],i=r[1]/r[3],o=0;for(e=1;e+1<t.length;++e){var s=t[e],l=t[e+1],c=s[0]/s[3]-n,u=s[1]/s[3]-i,f=l[0]/l[3]-n,h=l[1]/l[3]-i;o+=Math.abs(c*h-u*f)}return o}var m=[1,1,1],v=[0,0,0],g={cubeEdges:m,axis:v}},{"bit-twiddle":71,"gl-mat4/invert":186,"gl-mat4/multiply":188,"robust-orientation":495,"split-polygon":515}],160:[function(t,e,r){"use strict";e.exports=function(t,e,r){var o=[],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[0,0,0];o.push(0,0,1,0,1,1,0,0,-1,0,0,-1,0,1,1,0,1,-1);for(var f=0;f<3;++f){for(var h=o.length/3|0,p=0;p<r[f].length;++p){var m=+r[f][p].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;s[f]=h,l[f]=v-h;for(var h=o.length/3|0,g=0;g<r[f].length;++g){var m=+r[f][g].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;c[f]=h,u[f]=v-h}var y=n(t,new Float32Array(o)),b=i(t,[{buffer:y,type:t.FLOAT,size:3,stride:0,offset:0}]),x=a(t);return x.attributes.position.location=0,new d(t,y,b,x,l,s,u,c)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").line,o=[0,0,0],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[1,1];function f(t){return t[0]=t[1]=t[2]=0,t}function h(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t}function d(t,e,r,n,i,a,o,s){this.gl=t,this.vertBuffer=e,this.vao=r,this.shader=n,this.tickCount=i,this.tickOffset=a,this.gridCount=o,this.gridOffset=s}var p=d.prototype;p.bind=function(t,e,r){this.shader.bind(),this.shader.uniforms.model=t,this.shader.uniforms.view=e,this.shader.uniforms.projection=r,u[0]=this.gl.drawingBufferWidth,u[1]=this.gl.drawingBufferHeight,this.shader.uniforms.screenShape=u,this.vao.bind()},p.unbind=function(){this.vao.unbind()},p.drawAxisLine=function(t,e,r,n,i){var a=f(s);this.shader.uniforms.majorAxis=s,a[t]=e[1][t]-e[0][t],this.shader.uniforms.minorAxis=a;var o,u=h(c,r);u[t]+=e[0][t],this.shader.uniforms.offset=u,this.shader.uniforms.lineWidth=i,this.shader.uniforms.color=n,(o=f(l))[(t+2)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6),(o=f(l))[(t+1)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6)},p.drawAxisTicks=function(t,e,r,n,i){if(this.tickCount[t]){var a=f(o);a[t]=1,this.shader.uniforms.majorAxis=a,this.shader.uniforms.offset=e,this.shader.uniforms.minorAxis=r,this.shader.uniforms.color=n,this.shader.uniforms.lineWidth=i;var s=f(l);s[t]=1,this.shader.uniforms.screenAxis=s,this.vao.draw(this.gl.TRIANGLES,this.tickCount[t],this.tickOffset[t])}},p.drawGrid=function(t,e,r,n,i,a){if(this.gridCount[t]){var u=f(s);u[e]=r[1][e]-r[0][e],this.shader.uniforms.minorAxis=u;var d=h(c,n);d[e]+=r[0][e],this.shader.uniforms.offset=d;var p=f(o);p[t]=1,this.shader.uniforms.majorAxis=p;var m=f(l);m[t]=1,this.shader.uniforms.screenAxis=m,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,this.gridCount[t],this.gridOffset[t])}},p.drawZero=function(t,e,r,n,i,a){var o=f(s);this.shader.uniforms.majorAxis=o,o[t]=r[1][t]-r[0][t],this.shader.uniforms.minorAxis=o;var u=h(c,n);u[t]+=r[0][t],this.shader.uniforms.offset=u;var d=f(l);d[e]=1,this.shader.uniforms.screenAxis=d,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,6)},p.dispose=function(){this.vao.dispose(),this.vertBuffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],161:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, majorAxis, minorAxis, screenAxis;\nuniform float lineWidth;\nuniform vec2 screenShape;\n\nvec3 project(vec3 p) {\n  vec4 pp = projection * view * model * vec4(p, 1.0);\n  return pp.xyz / max(pp.w, 0.0001);\n}\n\nvoid main() {\n  vec3 major = position.x * majorAxis;\n  vec3 minor = position.y * minorAxis;\n\n  vec3 vPosition = major + minor + offset;\n  vec3 pPosition = project(vPosition);\n  vec3 offset = project(vPosition + screenAxis * position.z);\n\n  vec2 screen = normalize((offset - pPosition).xy * screenShape) / screenShape;\n\n  gl_Position = vec4(pPosition + vec3(0.5 * screen * lineWidth, 0), 1.0);\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.line=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"}])};var s=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, axis;\nuniform float scale, angle, pixelScale;\nuniform vec2 resolution;\n\nvoid main() {  \n  //Compute plane offset\n  vec2 planeCoord = position.xy * pixelScale;\n  mat2 planeXform = scale * mat2(cos(angle), sin(angle),\n                                -sin(angle), cos(angle));\n  vec2 viewOffset = 2.0 * planeXform * planeCoord / resolution;\n\n  //Compute world offset\n  float axisDistance = position.z;\n  vec3 dataPosition = axisDistance * axis + offset;\n  vec4 worldPosition = model * vec4(dataPosition, 1);\n  \n  //Compute clip position\n  vec4 viewPosition = view * worldPosition;\n  vec4 clipPosition = projection * viewPosition;\n  clipPosition /= clipPosition.w;\n\n  //Apply text offset in clip coordinates\n  clipPosition += vec4(viewOffset, 0, 0);\n\n  //Done\n  gl_Position = clipPosition;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.text=function(t){return i(t,s,l,null,[{name:"position",type:"vec3"}])};var c=n(["#define GLSLIFY 1\nattribute vec3 position;\nattribute vec3 normal;\n\nuniform mat4 model, view, projection;\nuniform vec3 enable;\nuniform vec3 bounds[2];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  if(dot(normal, enable) > 0.0) {\n    vec3 nPosition = mix(bounds[0], bounds[1], 0.5 * (position + 1.0));\n    gl_Position = projection * view * model * vec4(nPosition, 1.0);\n  } else {\n    gl_Position = vec4(0,0,0,0);\n  }\n  colorChannel = abs(normal);\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 colors[3];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  gl_FragColor = colorChannel.x * colors[0] + \n                 colorChannel.y * colors[1] +\n                 colorChannel.z * colors[2];\n}"]);r.bg=function(t){return i(t,c,u,null,[{name:"position",type:"vec3"},{name:"normal",type:"vec3"}])}},{"gl-shader":220,glslify:253}],162:[function(t,e,r){(function(r){"use strict";e.exports=function(t,e,r,a,s,l){var u=n(t),f=i(t,[{buffer:u,size:3}]),h=o(t);h.attributes.position.location=0;var d=new c(t,h,u,f);return d.update(e,r,a,s,l),d};var n=t("gl-buffer"),i=t("gl-vao"),a=t("vectorize-text"),o=t("./shaders").text,s=window||r.global||{},l=s.__TEXT_CACHE||{};s.__TEXT_CACHE={};function c(t,e,r,n){this.gl=t,this.shader=e,this.buffer=r,this.vao=n,this.tickOffset=this.tickCount=this.labelOffset=this.labelCount=null}var u=c.prototype,f=[0,0];u.bind=function(t,e,r,n){this.vao.bind(),this.shader.bind();var i=this.shader.uniforms;i.model=t,i.view=e,i.projection=r,i.pixelScale=n,f[0]=this.gl.drawingBufferWidth,f[1]=this.gl.drawingBufferHeight,this.shader.uniforms.resolution=f},u.unbind=function(){this.vao.unbind()},u.update=function(t,e,r,n,i){this.gl;var o=[];function s(t,e,r,n){var i=l[r];i||(i=l[r]={});var s=i[e];s||(s=i[e]=function(t,e){try{return a(t,e)}catch(t){return console.warn("error vectorizing text:",t),{cells:[],positions:[]}}}(e,{triangles:!0,font:r,textAlign:"center",textBaseline:"middle"}));for(var c=(n||12)/12,u=s.positions,f=s.cells,h=0,d=f.length;h<d;++h)for(var p=f[h],m=2;m>=0;--m){var 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i.length}l.update=function(t){"lineWidth"in(t=t||{})&&(this.lineWidth=t.lineWidth,Array.isArray(this.lineWidth)||(this.lineWidth=[this.lineWidth,this.lineWidth,this.lineWidth])),"capSize"in t&&(this.capSize=t.capSize,Array.isArray(this.capSize)||(this.capSize=[this.capSize,this.capSize,this.capSize])),"opacity"in t&&(this.opacity=t.opacity);var e=t.color||[[0,0,0],[0,0,0],[0,0,0]],r=t.position,n=t.error;if(Array.isArray(e[0])||(e=[e,e,e]),r&&n){var i=[],a=r.length,o=0;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.lineCount=[0,0,0];for(var s=0;s<3;++s){this.lineOffset[s]=o;t:for(var l=0;l<a;++l){for(var u=r[l],h=0;h<3;++h)if(isNaN(u[h])||!isFinite(u[h]))continue t;var d=n[l],p=e[s];if(Array.isArray(p[0])&&(p=e[l]),3===p.length&&(p=[p[0],p[1],p[2],1]),!isNaN(d[0][s])&&!isNaN(d[1][s])){var m;if(d[0][s]<0)(m=u.slice())[s]+=d[0][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s);if(d[1][s]>0)(m=u.slice())[s]+=d[1][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s)}}this.lineCount[s]=o-this.lineOffset[s]}this.buffer.update(i)}},l.dispose=function(){this.shader.dispose(),this.buffer.dispose(),this.vao.dispose()}},{"./shaders/index":170,"gl-buffer":165,"gl-vao":237}],169:[function(t,e,r){e.exports=function(t){"string"==typeof t&&(t=[t]);for(var e=[].slice.call(arguments,1),r=[],n=0;n<t.length-1;n++)r.push(t[n],e[n]||"");return r.push(t[n]),r.join("")}},{}],170:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, offset;\nattribute vec4 color;\nuniform mat4 model, view, projection;\nuniform float capSize;\nvarying vec4 fragColor;\nvarying vec3 fragPosition;\n\nvoid main() {\n  vec4 worldPosition  = model * vec4(position, 1.0);\n  worldPosition       = (worldPosition / worldPosition.w) + vec4(capSize * offset, 0.0);\n  gl_Position         = projection * view * worldPosition;\n  fragColor           = color;\n  fragPosition        = position;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec3 clipBounds[2];\nuniform float opacity;\nvarying vec3 fragPosition;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(fragPosition, clipBounds[0])) || any(greaterThan(fragPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = opacity * fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"offset",type:"vec3"}])}},{"gl-shader":220,glslify:169}],171:[function(t,e,r){"use strict";var n=t("gl-texture2d");e.exports=function(t,e,r,n){i||(i=t.FRAMEBUFFER_UNSUPPORTED,a=t.FRAMEBUFFER_INCOMPLETE_ATTACHMENT,o=t.FRAMEBUFFER_INCOMPLETE_DIMENSIONS,s=t.FRAMEBUFFER_INCOMPLETE_MISSING_ATTACHMENT);var c=t.getExtension("WEBGL_draw_buffers");!l&&c&&function(t,e){var r=t.getParameter(e.MAX_COLOR_ATTACHMENTS_WEBGL);l=new Array(r+1);for(var n=0;n<=r;++n){for(var i=new Array(r),a=0;a<n;++a)i[a]=t.COLOR_ATTACHMENT0+a;for(var a=n;a<r;++a)i[a]=t.NONE;l[n]=i}}(t,c);Array.isArray(e)&&(n=r,r=0|e[1],e=0|e[0]);if("number"!=typeof e)throw new Error("gl-fbo: Missing shape parameter");var u=t.getParameter(t.MAX_RENDERBUFFER_SIZE);if(e<0||e>u||r<0||r>u)throw new Error("gl-fbo: Parameters are too large for FBO");var f=1;if("color"in(n=n||{})){if((f=Math.max(0|n.color,0))<0)throw new Error("gl-fbo: Must specify a nonnegative number of colors");if(f>1){if(!c)throw new Error("gl-fbo: Multiple draw buffer extension not supported");if(f>t.getParameter(c.MAX_COLOR_ATTACHMENTS_WEBGL))throw new Error("gl-fbo: Context does not support "+f+" draw buffers")}}var h=t.UNSIGNED_BYTE,d=t.getExtension("OES_texture_float");if(n.float&&f>0){if(!d)throw new Error("gl-fbo: Context does not support floating point textures");h=t.FLOAT}else n.preferFloat&&f>0&&d&&(h=t.FLOAT);var m=!0;"depth"in n&&(m=!!n.depth);var v=!1;"stencil"in n&&(v=!!n.stencil);return new p(t,e,r,h,f,m,v,c)};var i,a,o,s,l=null;function c(t){return[t.getParameter(t.FRAMEBUFFER_BINDING),t.getParameter(t.RENDERBUFFER_BINDING),t.getParameter(t.TEXTURE_BINDING_2D)]}function u(t,e){t.bindFramebuffer(t.FRAMEBUFFER,e[0]),t.bindRenderbuffer(t.RENDERBUFFER,e[1]),t.bindTexture(t.TEXTURE_2D,e[2])}function f(t){switch(t){case i:throw new Error("gl-fbo: Framebuffer unsupported");case a:throw new Error("gl-fbo: Framebuffer incomplete attachment");case o:throw new Error("gl-fbo: Framebuffer incomplete dimensions");case s:throw new Error("gl-fbo: Framebuffer incomplete missing attachment");default:throw new Error("gl-fbo: Framebuffer failed for unspecified reason")}}function h(t,e,r,i,a,o){if(!i)return null;var s=n(t,e,r,a,i);return s.magFilter=t.NEAREST,s.minFilter=t.NEAREST,s.mipSamples=1,s.bind(),t.framebufferTexture2D(t.FRAMEBUFFER,o,t.TEXTURE_2D,s.handle,0),s}function d(t,e,r,n,i){var a=t.createRenderbuffer();return t.bindRenderbuffer(t.RENDERBUFFER,a),t.renderbufferStorage(t.RENDERBUFFER,n,e,r),t.framebufferRenderbuffer(t.FRAMEBUFFER,i,t.RENDERBUFFER,a),a}function p(t,e,r,n,i,a,o,s){this.gl=t,this._shape=[0|e,0|r],this._destroyed=!1,this._ext=s,this.color=new Array(i);for(var p=0;p<i;++p)this.color[p]=null;this._color_rb=null,this.depth=null,this._depth_rb=null,this._colorType=n,this._useDepth=a,this._useStencil=o;var m=this,v=[0|e,0|r];Object.defineProperties(v,{0:{get:function(){return m._shape[0]},set:function(t){return m.width=t}},1:{get:function(){return m._shape[1]},set:function(t){return m.height=t}}}),this._shapeVector=v,function(t){var e=c(t.gl),r=t.gl,n=t.handle=r.createFramebuffer(),i=t._shape[0],a=t._shape[1],o=t.color.length,s=t._ext,p=t._useStencil,m=t._useDepth,v=t._colorType;r.bindFramebuffer(r.FRAMEBUFFER,n);for(var g=0;g<o;++g)t.color[g]=h(r,i,a,v,r.RGBA,r.COLOR_ATTACHMENT0+g);0===o?(t._color_rb=d(r,i,a,r.RGBA4,r.COLOR_ATTACHMENT0),s&&s.drawBuffersWEBGL(l[0])):o>1&&s.drawBuffersWEBGL(l[o]);var y=r.getExtension("WEBGL_depth_texture");y?p?t.depth=h(r,i,a,y.UNSIGNED_INT_24_8_WEBGL,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m&&(t.depth=h(r,i,a,r.UNSIGNED_SHORT,r.DEPTH_COMPONENT,r.DEPTH_ATTACHMENT)):m&&p?t._depth_rb=d(r,i,a,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m?t._depth_rb=d(r,i,a,r.DEPTH_COMPONENT16,r.DEPTH_ATTACHMENT):p&&(t._depth_rb=d(r,i,a,r.STENCIL_INDEX,r.STENCIL_ATTACHMENT));var b=r.checkFramebufferStatus(r.FRAMEBUFFER);if(b!==r.FRAMEBUFFER_COMPLETE){for(t._destroyed=!0,r.bindFramebuffer(r.FRAMEBUFFER,null),r.deleteFramebuffer(t.handle),t.handle=null,t.depth&&(t.depth.dispose(),t.depth=null),t._depth_rb&&(r.deleteRenderbuffer(t._depth_rb),t._depth_rb=null),g=0;g<t.color.length;++g)t.color[g].dispose(),t.color[g]=null;t._color_rb&&(r.deleteRenderbuffer(t._color_rb),t._color_rb=null),u(r,e),f(b)}u(r,e)}(this)}var m=p.prototype;function v(t,e,r){if(t._destroyed)throw new Error("gl-fbo: Can't resize destroyed FBO");if(t._shape[0]!==e||t._shape[1]!==r){var n=t.gl,i=n.getParameter(n.MAX_RENDERBUFFER_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-fbo: Can't resize FBO, invalid dimensions");t._shape[0]=e,t._shape[1]=r;for(var a=c(n),o=0;o<t.color.length;++o)t.color[o].shape=t._shape;t._color_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._color_rb),n.renderbufferStorage(n.RENDERBUFFER,n.RGBA4,t._shape[0],t._shape[1])),t.depth&&(t.depth.shape=t._shape),t._depth_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._depth_rb),t._useDepth&&t._useStencil?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_STENCIL,t._shape[0],t._shape[1]):t._useDepth?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_COMPONENT16,t._shape[0],t._shape[1]):t._useStencil&&n.renderbufferStorage(n.RENDERBUFFER,n.STENCIL_INDEX,t._shape[0],t._shape[1])),n.bindFramebuffer(n.FRAMEBUFFER,t.handle);var s=n.checkFramebufferStatus(n.FRAMEBUFFER);s!==n.FRAMEBUFFER_COMPLETE&&(t.dispose(),u(n,a),f(s)),u(n,a)}}Object.defineProperties(m,{shape:{get:function(){return this._destroyed?[0,0]:this._shapeVector},set:function(t){if(Array.isArray(t)||(t=[0|t,0|t]),2!==t.length)throw new Error("gl-fbo: Shape vector must be length 2");var e=0|t[0],r=0|t[1];return v(this,e,r),[e,r]},enumerable:!1},width:{get:function(){return this._destroyed?0:this._shape[0]},set:function(t){return v(this,t|=0,this._shape[1]),t},enumerable:!1},height:{get:function(){return this._destroyed?0:this._shape[1]},set:function(t){return t|=0,v(this,this._shape[0],t),t},enumerable:!1}}),m.bind=function(){if(!this._destroyed){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,this.handle),t.viewport(0,0,this._shape[0],this._shape[1])}},m.dispose=function(){if(!this._destroyed){this._destroyed=!0;var t=this.gl;t.deleteFramebuffer(this.handle),this.handle=null,this.depth&&(this.depth.dispose(),this.depth=null),this._depth_rb&&(t.deleteRenderbuffer(this._depth_rb),this._depth_rb=null);for(var e=0;e<this.color.length;++e)this.color[e].dispose(),this.color[e]=null;this._color_rb&&(t.deleteRenderbuffer(this._color_rb),this._color_rb=null)}}},{"gl-texture2d":233}],172:[function(t,e,r){var n=t("sprintf-js").sprintf,i=t("gl-constants/lookup"),a=t("glsl-shader-name"),o=t("add-line-numbers");e.exports=function(t,e,r){"use strict";var s=a(e)||"of unknown name (see npm glsl-shader-name)",l="unknown type";void 0!==r&&(l=r===i.FRAGMENT_SHADER?"fragment":"vertex");for(var c=n("Error compiling %s shader %s:\n",l,s),u=n("%s%s",c,t),f=t.split("\n"),h={},d=0;d<f.length;d++){var p=f[d];if(""!==p&&"\0"!==p){var m=parseInt(p.split(":")[2]);if(isNaN(m))throw new Error(n("Could not parse error: %s",p));h[m]=p}}for(var v=o(e).split("\n"),d=0;d<v.length;d++)if(h[d+3]||h[d+2]||h[d+1]){var g=v[d];if(c+=g+"\n",h[d+1]){var y=h[d+1];y=y.substr(y.split(":",3).join(":").length+1).trim(),c+=n("^^^ %s\n\n",y)}}return{long:c.trim(),short:u.trim()}}},{"add-line-numbers":44,"gl-constants/lookup":167,"glsl-shader-name":245,"sprintf-js":516}],173:[function(t,e,r){"use strict";e.exports=function(t,e){var r=t.gl,n=o(r,l.vertex,l.fragment),i=o(r,l.pickVertex,l.pickFragment),a=s(r),u=s(r),f=s(r),h=s(r),d=new c(t,n,i,a,u,f,h);return d.update(e),t.addObject(d),d};var n=t("binary-search-bounds"),i=t("iota-array"),a=t("typedarray-pool"),o=t("gl-shader"),s=t("gl-buffer"),l=t("./lib/shaders");function c(t,e,r,n,i,a,o){this.plot=t,this.shader=e,this.pickShader=r,this.positionBuffer=n,this.weightBuffer=i,this.colorBuffer=a,this.idBuffer=o,this.xData=[],this.yData=[],this.shape=[0,0],this.bounds=[1/0,1/0,-1/0,-1/0],this.pickOffset=0}var u,f=c.prototype,h=[0,0,1,0,0,1,1,0,1,1,0,1];f.draw=(u=[1,0,0,0,1,0,0,0,1],function(){var t=this.plot,e=this.shader,r=this.bounds,n=this.numVertices;if(!(n<=0)){var i=t.gl,a=t.dataBox,o=r[2]-r[0],s=r[3]-r[1],l=a[2]-a[0],c=a[3]-a[1];u[0]=2*o/l,u[4]=2*s/c,u[6]=2*(r[0]-a[0])/l-1,u[7]=2*(r[1]-a[1])/c-1,e.bind();var f=e.uniforms;f.viewTransform=u,f.shape=this.shape;var h=e.attributes;this.positionBuffer.bind(),h.position.pointer(),this.weightBuffer.bind(),h.weight.pointer(i.UNSIGNED_BYTE,!1),this.colorBuffer.bind(),h.color.pointer(i.UNSIGNED_BYTE,!0),i.drawArrays(i.TRIANGLES,0,n)}}),f.drawPick=function(){var t=[1,0,0,0,1,0,0,0,1],e=[0,0,0,0];return function(r){var n=this.plot,i=this.pickShader,a=this.bounds,o=this.numVertices;if(!(o<=0)){var s=n.gl,l=n.dataBox,c=a[2]-a[0],u=a[3]-a[1],f=l[2]-l[0],h=l[3]-l[1];t[0]=2*c/f,t[4]=2*u/h,t[6]=2*(a[0]-l[0])/f-1,t[7]=2*(a[1]-l[1])/h-1;for(var d=0;d<4;++d)e[d]=r>>8*d&255;this.pickOffset=r,i.bind();var p=i.uniforms;p.viewTransform=t,p.pickOffset=e,p.shape=this.shape;var m=i.attributes;return this.positionBuffer.bind(),m.position.pointer(),this.weightBuffer.bind(),m.weight.pointer(s.UNSIGNED_BYTE,!1),this.idBuffer.bind(),m.pickId.pointer(s.UNSIGNED_BYTE,!1),s.drawArrays(s.TRIANGLES,0,o),r+this.shape[0]*this.shape[1]}}}(),f.pick=function(t,e,r){var n=this.pickOffset,i=this.shape[0]*this.shape[1];if(r<n||r>=n+i)return null;var a=r-n,o=this.xData,s=this.yData;return{object:this,pointId:a,dataCoord:[o[a%this.shape[0]],s[a/this.shape[0]|0]]}},f.update=function(t){var e=(t=t||{}).shape||[0,0],r=t.x||i(e[0]),o=t.y||i(e[1]),s=t.z||new Float32Array(e[0]*e[1]);this.xData=r,this.yData=o;var l=t.colorLevels||[0],c=t.colorValues||[0,0,0,1],u=l.length,f=this.bounds,d=f[0]=r[0],p=f[1]=o[0],m=1/((f[2]=r[r.length-1])-d),v=1/((f[3]=o[o.length-1])-p),g=e[0],y=e[1];this.shape=[g,y];var b=(g-1)*(y-1)*(h.length>>>1);this.numVertices=b;for(var x=a.mallocUint8(4*b),_=a.mallocFloat32(2*b),w=a.mallocUint8(2*b),M=a.mallocUint32(b),k=0,A=0;A<y-1;++A)for(var T=v*(o[A]-p),E=v*(o[A+1]-p),S=0;S<g-1;++S)for(var L=m*(r[S]-d),C=m*(r[S+1]-d),P=0;P<h.length;P+=2){var z,O,D,I,R=h[P],N=h[P+1],F=s[(A+N)*g+(S+R)],j=n.le(l,F);if(j<0)z=c[0],O=c[1],D=c[2],I=c[3];else if(j===u-1)z=c[4*u-4],O=c[4*u-3],D=c[4*u-2],I=c[4*u-1];else{var B=(F-l[j])/(l[j+1]-l[j]),U=1-B,V=4*j,q=4*(j+1);z=U*c[V]+B*c[q],O=U*c[V+1]+B*c[q+1],D=U*c[V+2]+B*c[q+2],I=U*c[V+3]+B*c[q+3]}x[4*k]=255*z,x[4*k+1]=255*O,x[4*k+2]=255*D,x[4*k+3]=255*I,_[2*k]=.5*L+.5*C,_[2*k+1]=.5*T+.5*E,w[2*k]=R,w[2*k+1]=N,M[k]=A*g+S,k+=1}this.positionBuffer.update(_),this.weightBuffer.update(w),this.colorBuffer.update(x),this.idBuffer.update(M),a.free(_),a.free(x),a.free(w),a.free(M)},f.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.positionBuffer.dispose(),this.weightBuffer.dispose(),this.colorBuffer.dispose(),this.idBuffer.dispose(),this.plot.removeObject(this)}},{"./lib/shaders":174,"binary-search-bounds":175,"gl-buffer":165,"gl-shader":220,"iota-array":261,"typedarray-pool":534}],174:[function(t,e,r){"use strict";var n=t("glslify");e.exports={fragment:n(["precision lowp float;\n#define GLSLIFY 1\nvarying vec4 fragColor;\nvoid main() {\n  gl_FragColor = vec4(fragColor.rgb * fragColor.a, fragColor.a);\n}\n"]),vertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 color;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  fragColor = color;\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"]),pickFragment:n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nuniform vec2 shape;\nuniform vec4 pickOffset;\n\nvoid main() {\n  vec2 d = step(.5, vWeight);\n  vec4 id = fragId + pickOffset;\n  id.x += d.x + d.y*shape.x;\n\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  gl_FragColor = id/255.;\n}\n"]),pickVertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nvoid main() {\n  vWeight = weight;\n\n  fragId = pickId;\n\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"])}},{glslify:253}],175:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],176:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, nextPosition;\nattribute float arcLength, lineWidth;\nattribute vec4 color;\n\nuniform vec2 screenShape;\nuniform float pixelRatio;\nuniform mat4 model, view, projection;\n\nvarying vec4 fragColor;\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\n\nvoid main() {\n  vec4 projected = projection * view * model * vec4(position, 1.0);\n  vec4 tangentClip = projection * view * model * vec4(nextPosition - position, 0.0);\n  vec2 tangent = normalize(screenShape * tangentClip.xy);\n  vec2 offset = 0.5 * pixelRatio * lineWidth * vec2(tangent.y, -tangent.x) / screenShape;\n\n  gl_Position = vec4(projected.xy + projected.w * offset, projected.zw);\n\n  worldPosition = position;\n  pixelArcLength = arcLength;\n  fragColor = color;\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3      clipBounds[2];\nuniform sampler2D dashTexture;\nuniform float     dashScale;\nuniform float     opacity;\n\nvarying vec3    worldPosition;\nvarying float   pixelArcLength;\nvarying vec4    fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  float dashWeight = texture2D(dashTexture, vec2(dashScale * pixelArcLength, 0)).r;\n  if(dashWeight < 0.5) {\n    discard;\n  }\n  gl_FragColor = fragColor * opacity;\n}\n"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\n#define FLOAT_MAX  1.70141184e38\n#define FLOAT_MIN  1.17549435e-38\n\nlowp vec4 encode_float_1540259130(highp float v) {\n  highp float av = abs(v);\n\n  //Handle special cases\n  if(av < FLOAT_MIN) {\n    return vec4(0.0, 0.0, 0.0, 0.0);\n  } else if(v > FLOAT_MAX) {\n    return vec4(127.0, 128.0, 0.0, 0.0) / 255.0;\n  } else if(v < -FLOAT_MAX) {\n    return vec4(255.0, 128.0, 0.0, 0.0) / 255.0;\n  }\n\n  highp vec4 c = vec4(0,0,0,0);\n\n  //Compute exponent and mantissa\n  highp float e = floor(log2(av));\n  highp float m = av * pow(2.0, -e) - 1.0;\n  \n  //Unpack mantissa\n  c[1] = floor(128.0 * m);\n  m -= c[1] / 128.0;\n  c[2] = floor(32768.0 * m);\n  m -= c[2] / 32768.0;\n  c[3] = floor(8388608.0 * m);\n  \n  //Unpack exponent\n  highp float ebias = e + 127.0;\n  c[0] = floor(ebias / 2.0);\n  ebias -= c[0] * 2.0;\n  c[1] += floor(ebias) * 128.0; \n\n  //Unpack sign bit\n  c[0] += 128.0 * step(0.0, -v);\n\n  //Scale back to range\n  return c / 255.0;\n}\n\nuniform float pickId;\nuniform vec3 clipBounds[2];\n\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId/255.0, encode_float_1540259130(pixelArcLength).xyz);\n}"]),l=[{name:"position",type:"vec3"},{name:"nextPosition",type:"vec3"},{name:"arcLength",type:"float"},{name:"lineWidth",type:"float"},{name:"color",type:"vec4"}];r.createShader=function(t){return i(t,a,o,null,l)},r.createPickShader=function(t){return i(t,a,s,null,l)}},{"gl-shader":220,glslify:253}],177:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl||t.scene&&t.scene.gl,r=u(e);r.attributes.position.location=0,r.attributes.nextPosition.location=1,r.attributes.arcLength.location=2,r.attributes.lineWidth.location=3,r.attributes.color.location=4;var o=f(e);o.attributes.position.location=0,o.attributes.nextPosition.location=1,o.attributes.arcLength.location=2,o.attributes.lineWidth.location=3,o.attributes.color.location=4;for(var s=n(e),c=i(e,[{buffer:s,size:3,offset:0,stride:48},{buffer:s,size:3,offset:12,stride:48},{buffer:s,size:1,offset:24,stride:48},{buffer:s,size:1,offset:28,stride:48},{buffer:s,size:4,offset:32,stride:48}]),h=l(new Array(1024),[256,1,4]),d=0;d<1024;++d)h.data[d]=255;var p=a(e,h);p.wrap=e.REPEAT;var m=new v(e,r,o,s,c,p);return m.update(t),m};var n=t("gl-buffer"),i=t("gl-vao"),a=t("gl-texture2d"),o=t("glsl-read-float"),s=t("binary-search-bounds"),l=t("ndarray"),c=t("./lib/shaders"),u=c.createShader,f=c.createPickShader,h=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function d(t,e){for(var r=0,n=0;n<3;++n){var i=t[n]-e[n];r+=i*i}return Math.sqrt(r)}function p(t){for(var e=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],r=0;r<3;++r)e[0][r]=Math.max(t[0][r],e[0][r]),e[1][r]=Math.min(t[1][r],e[1][r]);return e}function m(t,e,r,n){this.arcLength=t,this.position=e,this.index=r,this.dataCoordinate=n}function v(t,e,r,n,i,a){this.gl=t,this.shader=e,this.pickShader=r,this.buffer=n,this.vao=i,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.points=[],this.arcLength=[],this.vertexCount=0,this.bounds=[[0,0,0],[0,0,0]],this.pickId=0,this.lineWidth=1,this.texture=a,this.dashScale=1,this.opacity=1,this.dirty=!0,this.pixelRatio=1}var g=v.prototype;g.isTransparent=function(){return this.opacity<1},g.isOpaque=function(){return this.opacity>=1},g.pickSlots=1,g.setPickBase=function(t){this.pickId=t},g.drawTransparent=g.draw=function(t){var e=this.gl,r=this.shader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,clipBounds:p(this.clipBounds),dashTexture:this.texture.bind(),dashScale:this.dashScale/this.arcLength[this.arcLength.length-1],opacity:this.opacity,screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.drawPick=function(t){var e=this.gl,r=this.pickShader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,pickId:this.pickId,clipBounds:p(this.clipBounds),screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.update=function(t){var e,r;this.dirty=!0;var n=!!t.connectGaps;"dashScale"in t&&(this.dashScale=t.dashScale),"opacity"in t&&(this.opacity=+t.opacity);var i=t.position||t.positions;if(i){var a=t.color||t.colors||[0,0,0,1],o=t.lineWidth||1,c=[],u=[],f=[],h=0,p=0,m=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],v=!1;t:for(e=1;e<i.length;++e){var g,y,b,x=i[e-1],_=i[e];for(u.push(h),f.push(x.slice()),r=0;r<3;++r){if(isNaN(x[r])||isNaN(_[r])||!isFinite(x[r])||!isFinite(_[r])){if(!n&&c.length>0){for(var w=0;w<24;++w)c.push(c[c.length-12]);p+=2,v=!0}continue t}m[0][r]=Math.min(m[0][r],x[r],_[r]),m[1][r]=Math.max(m[1][r],x[r],_[r])}Array.isArray(a[0])?(g=a[e-1],y=a[e]):g=y=a,3===g.length&&(g=[g[0],g[1],g[2],1]),3===y.length&&(y=[y[0],y[1],y[2],1]),b=Array.isArray(o)?o[e-1]:o;var M=h;if(h+=d(x,_),v){for(r=0;r<2;++r)c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3]);p+=2,v=!1}c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3],x[0],x[1],x[2],_[0],_[1],_[2],M,-b,g[0],g[1],g[2],g[3],_[0],_[1],_[2],x[0],x[1],x[2],h,-b,y[0],y[1],y[2],y[3],_[0],_[1],_[2],x[0],x[1],x[2],h,b,y[0],y[1],y[2],y[3]),p+=4}if(this.buffer.update(c),u.push(h),f.push(i[i.length-1].slice()),this.bounds=m,this.vertexCount=p,this.points=f,this.arcLength=u,"dashes"in t){var k=t.dashes.slice();for(k.unshift(0),e=1;e<k.length;++e)k[e]=k[e-1]+k[e];var A=l(new Array(1024),[256,1,4]);for(e=0;e<256;++e){for(r=0;r<4;++r)A.set(e,0,r,0);1&s.le(k,k[k.length-1]*e/255)?A.set(e,0,0,0):A.set(e,0,0,255)}this.texture.setPixels(A)}}},g.dispose=function(){this.shader.dispose(),this.vao.dispose(),this.buffer.dispose()},g.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=o(t.value[0],t.value[1],t.value[2],0),r=s.le(this.arcLength,e);if(r<0)return null;if(r===this.arcLength.length-1)return new m(this.arcLength[this.arcLength.length-1],this.points[this.points.length-1].slice(),r);for(var n=this.points[r],i=this.points[Math.min(r+1,this.points.length-1)],a=(e-this.arcLength[r])/(this.arcLength[r+1]-this.arcLength[r]),l=1-a,c=[0,0,0],u=0;u<3;++u)c[u]=l*n[u]+a*i[u];var f=Math.min(a<.5?r:r+1,this.points.length-1);return new m(e,c,f,this.points[f])}},{"./lib/shaders":176,"binary-search-bounds":70,"gl-buffer":165,"gl-texture2d":233,"gl-vao":237,"glsl-read-float":244,ndarray:439}],178:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r*a-i*n;return o?(o=1/o,t[0]=a*o,t[1]=-n*o,t[2]=-i*o,t[3]=r*o,t):null}},{}],179:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=u*o-s*c,h=-u*a+s*l,d=c*a-o*l,p=r*f+n*h+i*d;return p?(p=1/p,t[0]=f*p,t[1]=(-u*n+i*c)*p,t[2]=(s*n-i*o)*p,t[3]=h*p,t[4]=(u*r-i*l)*p,t[5]=(-s*r+i*a)*p,t[6]=d*p,t[7]=(-c*r+n*l)*p,t[8]=(o*r-n*a)*p,t):null}},{}],180:[function(t,e,r){e.exports=function(t){var e=new Float32Array(16);return e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],e[4]=t[4],e[5]=t[5],e[6]=t[6],e[7]=t[7],e[8]=t[8],e[9]=t[9],e[10]=t[10],e[11]=t[11],e[12]=t[12],e[13]=t[13],e[14]=t[14],e[15]=t[15],e}},{}],181:[function(t,e,r){e.exports=function(){var t=new Float32Array(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],182:[function(t,e,r){e.exports=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)}},{}],183:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],184:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t}},{}],185:[function(t,e,r){e.exports=function(t){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],186:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t}},{}],187:[function(t,e,r){var n=t("./identity");e.exports=function(t,e,r,i){var a,o,s,l,c,u,f,h,d,p,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<1e-6&&Math.abs(v-w)<1e-6&&Math.abs(g-M)<1e-6)return n(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t}},{"./identity":185}],188:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=e[6],u=e[7],f=e[8],h=e[9],d=e[10],p=e[11],m=e[12],v=e[13],g=e[14],y=e[15],b=r[0],x=r[1],_=r[2],w=r[3];return t[0]=b*n+x*s+_*f+w*m,t[1]=b*i+x*l+_*h+w*v,t[2]=b*a+x*c+_*d+w*g,t[3]=b*o+x*u+_*p+w*y,b=r[4],x=r[5],_=r[6],w=r[7],t[4]=b*n+x*s+_*f+w*m,t[5]=b*i+x*l+_*h+w*v,t[6]=b*a+x*c+_*d+w*g,t[7]=b*o+x*u+_*p+w*y,b=r[8],x=r[9],_=r[10],w=r[11],t[8]=b*n+x*s+_*f+w*m,t[9]=b*i+x*l+_*h+w*v,t[10]=b*a+x*c+_*d+w*g,t[11]=b*o+x*u+_*p+w*y,b=r[12],x=r[13],_=r[14],w=r[15],t[12]=b*n+x*s+_*f+w*m,t[13]=b*i+x*l+_*h+w*v,t[14]=b*a+x*c+_*d+w*g,t[15]=b*o+x*u+_*p+w*y,t}},{}],189:[function(t,e,r){e.exports=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t}},{}],190:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w,M,k,A,T,E,S=n[0],L=n[1],C=n[2],P=Math.sqrt(S*S+L*L+C*C);if(Math.abs(P)<1e-6)return null;S*=P=1/P,L*=P,C*=P,i=Math.sin(r),a=Math.cos(r),o=1-a,s=e[0],l=e[1],c=e[2],u=e[3],f=e[4],h=e[5],d=e[6],p=e[7],m=e[8],v=e[9],g=e[10],y=e[11],b=S*S*o+a,x=L*S*o+C*i,_=C*S*o-L*i,w=S*L*o-C*i,M=L*L*o+a,k=C*L*o+S*i,A=S*C*o+L*i,T=L*C*o-S*i,E=C*C*o+a,t[0]=s*b+f*x+m*_,t[1]=l*b+h*x+v*_,t[2]=c*b+d*x+g*_,t[3]=u*b+p*x+y*_,t[4]=s*w+f*M+m*k,t[5]=l*w+h*M+v*k,t[6]=c*w+d*M+g*k,t[7]=u*w+p*M+y*k,t[8]=s*A+f*T+m*E,t[9]=l*A+h*T+v*E,t[10]=c*A+d*T+g*E,t[11]=u*A+p*T+y*E,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t}},{}],191:[function(t,e,r){e.exports=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t}},{}],192:[function(t,e,r){e.exports=function(t,e,r){var 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n=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var r in t)Object.prototype.hasOwnProperty.call(t,r)&&(e[r]=t[r]);return e.default=t,e}(r(0));function i(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=r[0],u=r[1],f=r[2],h=r[3],d=r[4],p=r[5];return t[0]=n*c+a*u,t[1]=i*c+o*u,t[2]=n*f+a*h,t[3]=i*f+o*h,t[4]=n*d+a*p+s,t[5]=i*d+o*p+l,t}function a(t,e,r){return t[0]=e[0]-r[0],t[1]=e[1]-r[1],t[2]=e[2]-r[2],t[3]=e[3]-r[3],t[4]=e[4]-r[4],t[5]=e[5]-r[5],t}e.mul=i,e.sub=a},function(t,e,r){"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.sub=e.mul=void 0,e.create=function(){var t=new n.ARRAY_TYPE(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.clone=function(t){var e=new n.ARRAY_TYPE(16);return 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r=e[1],n=e[2],i=e[3],a=e[6],o=e[7],s=e[11];t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=r,t[6]=e[9],t[7]=e[13],t[8]=n,t[9]=a,t[11]=e[14],t[12]=i,t[13]=o,t[14]=s}else t[0]=e[0],t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=e[1],t[5]=e[5],t[6]=e[9],t[7]=e[13],t[8]=e[2],t[9]=e[6],t[10]=e[10],t[11]=e[14],t[12]=e[3],t[13]=e[7],t[14]=e[11],t[15]=e[15];return t},e.invert=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t},e.adjoint=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15];return t[0]=s*(h*g-d*v)-f*(l*g-c*v)+m*(l*d-c*h),t[1]=-(n*(h*g-d*v)-f*(i*g-a*v)+m*(i*d-a*h)),t[2]=n*(l*g-c*v)-s*(i*g-a*v)+m*(i*c-a*l),t[3]=-(n*(l*d-c*h)-s*(i*d-a*h)+f*(i*c-a*l)),t[4]=-(o*(h*g-d*v)-u*(l*g-c*v)+p*(l*d-c*h)),t[5]=r*(h*g-d*v)-u*(i*g-a*v)+p*(i*d-a*h),t[6]=-(r*(l*g-c*v)-o*(i*g-a*v)+p*(i*c-a*l)),t[7]=r*(l*d-c*h)-o*(i*d-a*h)+u*(i*c-a*l),t[8]=o*(f*g-d*m)-u*(s*g-c*m)+p*(s*d-c*f),t[9]=-(r*(f*g-d*m)-u*(n*g-a*m)+p*(n*d-a*f)),t[10]=r*(s*g-c*m)-o*(n*g-a*m)+p*(n*c-a*s),t[11]=-(r*(s*d-c*f)-o*(n*d-a*f)+u*(n*c-a*s)),t[12]=-(o*(f*v-h*m)-u*(s*v-l*m)+p*(s*h-l*f)),t[13]=r*(f*v-h*m)-u*(n*v-i*m)+p*(n*h-i*f),t[14]=-(r*(s*v-l*m)-o*(n*v-i*m)+p*(n*l-i*s)),t[15]=r*(s*h-l*f)-o*(n*h-i*f)+u*(n*l-i*s),t},e.determinant=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)},e.multiply=i,e.translate=function(t,e,r){var n=r[0],i=r[1],a=r[2],o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0;e===t?(t[12]=e[0]*n+e[4]*i+e[8]*a+e[12],t[13]=e[1]*n+e[5]*i+e[9]*a+e[13],t[14]=e[2]*n+e[6]*i+e[10]*a+e[14],t[15]=e[3]*n+e[7]*i+e[11]*a+e[15]):(o=e[0],s=e[1],l=e[2],c=e[3],u=e[4],f=e[5],h=e[6],d=e[7],p=e[8],m=e[9],v=e[10],g=e[11],t[0]=o,t[1]=s,t[2]=l,t[3]=c,t[4]=u,t[5]=f,t[6]=h,t[7]=d,t[8]=p,t[9]=m,t[10]=v,t[11]=g,t[12]=o*n+u*i+p*a+e[12],t[13]=s*n+f*i+m*a+e[13],t[14]=l*n+h*i+v*a+e[14],t[15]=c*n+d*i+g*a+e[15]);return t},e.scale=function(t,e,r){var n=r[0],i=r[1],a=r[2];return t[0]=e[0]*n,t[1]=e[1]*n,t[2]=e[2]*n,t[3]=e[3]*n,t[4]=e[4]*i,t[5]=e[5]*i,t[6]=e[6]*i,t[7]=e[7]*i,t[8]=e[8]*a,t[9]=e[9]*a,t[10]=e[10]*a,t[11]=e[11]*a,t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15],t},e.rotate=function(t,e,r,i){var a=i[0],o=i[1],s=i[2],l=Math.sqrt(a*a+o*o+s*s),c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0,y=void 0,b=void 0,x=void 0,_=void 0,w=void 0,M=void 0,k=void 0,A=void 0,T=void 0,E=void 0,S=void 0,L=void 0,C=void 0,P=void 0,z=void 0;if(Math.abs(l)<n.EPSILON)return null;a*=l=1/l,o*=l,s*=l,c=Math.sin(r),u=Math.cos(r),f=1-u,h=e[0],d=e[1],p=e[2],m=e[3],v=e[4],g=e[5],y=e[6],b=e[7],x=e[8],_=e[9],w=e[10],M=e[11],k=a*a*f+u,A=o*a*f+s*c,T=s*a*f-o*c,E=a*o*f-s*c,S=o*o*f+u,L=s*o*f+a*c,C=a*s*f+o*c,P=o*s*f-a*c,z=s*s*f+u,t[0]=h*k+v*A+x*T,t[1]=d*k+g*A+_*T,t[2]=p*k+y*A+w*T,t[3]=m*k+b*A+M*T,t[4]=h*E+v*S+x*L,t[5]=d*E+g*S+_*L,t[6]=p*E+y*S+w*L,t[7]=m*E+b*S+M*L,t[8]=h*C+v*P+x*z,t[9]=d*C+g*P+_*z,t[10]=p*C+y*P+w*z,t[11]=m*C+b*P+M*z,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t},e.rotateX=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t},e.rotateY=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[4]=e[4],t[5]=e[5],t[6]=e[6],t[7]=e[7],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i-c*n,t[1]=o*i-u*n,t[2]=s*i-f*n,t[3]=l*i-h*n,t[8]=a*n+c*i,t[9]=o*n+u*i,t[10]=s*n+f*i,t[11]=l*n+h*i,t},e.rotateZ=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[4],u=e[5],f=e[6],h=e[7];e!==t&&(t[8]=e[8],t[9]=e[9],t[10]=e[10],t[11]=e[11],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i+c*n,t[1]=o*i+u*n,t[2]=s*i+f*n,t[3]=l*i+h*n,t[4]=c*i-a*n,t[5]=u*i-o*n,t[6]=f*i-s*n,t[7]=h*i-l*n,t},e.fromTranslation=function(t,e){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=e[0],t[13]=e[1],t[14]=e[2],t[15]=1,t},e.fromScaling=function(t,e){return t[0]=e[0],t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=e[1],t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=e[2],t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotation=function(t,e,r){var i=r[0],a=r[1],o=r[2],s=Math.sqrt(i*i+a*a+o*o),l=void 0,c=void 0,u=void 0;if(Math.abs(s)<n.EPSILON)return null;return i*=s=1/s,a*=s,o*=s,l=Math.sin(e),c=Math.cos(e),u=1-c,t[0]=i*i*u+c,t[1]=a*i*u+o*l,t[2]=o*i*u-a*l,t[3]=0,t[4]=i*a*u-o*l,t[5]=a*a*u+c,t[6]=o*a*u+i*l,t[7]=0,t[8]=i*o*u+a*l,t[9]=a*o*u-i*l,t[10]=o*o*u+c,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromXRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=n,t[6]=r,t[7]=0,t[8]=0,t[9]=-r,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromYRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=0,t[2]=-r,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=r,t[9]=0,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromZRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=r,t[2]=0,t[3]=0,t[4]=-r,t[5]=n,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotationTranslation=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.getTranslation=function(t,e){return t[0]=e[12],t[1]=e[13],t[2]=e[14],t},e.getScaling=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[4],o=e[5],s=e[6],l=e[8],c=e[9],u=e[10];return t[0]=Math.sqrt(r*r+n*n+i*i),t[1]=Math.sqrt(a*a+o*o+s*s),t[2]=Math.sqrt(l*l+c*c+u*u),t},e.getRotation=function(t,e){var r=e[0]+e[5]+e[10],n=0;r>0?(n=2*Math.sqrt(r+1),t[3]=.25*n,t[0]=(e[6]-e[9])/n,t[1]=(e[8]-e[2])/n,t[2]=(e[1]-e[4])/n):e[0]>e[5]&e[0]>e[10]?(n=2*Math.sqrt(1+e[0]-e[5]-e[10]),t[3]=(e[6]-e[9])/n,t[0]=.25*n,t[1]=(e[1]+e[4])/n,t[2]=(e[8]+e[2])/n):e[5]>e[10]?(n=2*Math.sqrt(1+e[5]-e[0]-e[10]),t[3]=(e[8]-e[2])/n,t[0]=(e[1]+e[4])/n,t[1]=.25*n,t[2]=(e[6]+e[9])/n):(n=2*Math.sqrt(1+e[10]-e[0]-e[5]),t[3]=(e[1]-e[4])/n,t[0]=(e[8]+e[2])/n,t[1]=(e[6]+e[9])/n,t[2]=.25*n);return t},e.fromRotationTranslationScale=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=e[3],l=i+i,c=a+a,u=o+o,f=i*l,h=i*c,d=i*u,p=a*c,m=a*u,v=o*u,g=s*l,y=s*c,b=s*u,x=n[0],_=n[1],w=n[2];return t[0]=(1-(p+v))*x,t[1]=(h+b)*x,t[2]=(d-y)*x,t[3]=0,t[4]=(h-b)*_,t[5]=(1-(f+v))*_,t[6]=(m+g)*_,t[7]=0,t[8]=(d+y)*w,t[9]=(m-g)*w,t[10]=(1-(f+p))*w,t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.fromRotationTranslationScaleOrigin=function(t,e,r,n,i){var a=e[0],o=e[1],s=e[2],l=e[3],c=a+a,u=o+o,f=s+s,h=a*c,d=a*u,p=a*f,m=o*u,v=o*f,g=s*f,y=l*c,b=l*u,x=l*f,_=n[0],w=n[1],M=n[2],k=i[0],A=i[1],T=i[2];return t[0]=(1-(m+g))*_,t[1]=(d+x)*_,t[2]=(p-b)*_,t[3]=0,t[4]=(d-x)*w,t[5]=(1-(h+g))*w,t[6]=(v+y)*w,t[7]=0,t[8]=(p+b)*M,t[9]=(v-y)*M,t[10]=(1-(h+m))*M,t[11]=0,t[12]=r[0]+k-(t[0]*k+t[4]*A+t[8]*T),t[13]=r[1]+A-(t[1]*k+t[5]*A+t[9]*T),t[14]=r[2]+T-(t[2]*k+t[6]*A+t[10]*T),t[15]=1,t},e.fromQuat=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.frustum=function(t,e,r,n,i,a,o){var s=1/(r-e),l=1/(i-n),c=1/(a-o);return t[0]=2*a*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=2*a*l,t[6]=0,t[7]=0,t[8]=(r+e)*s,t[9]=(i+n)*l,t[10]=(o+a)*c,t[11]=-1,t[12]=0,t[13]=0,t[14]=o*a*2*c,t[15]=0,t},e.perspective=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t},e.perspectiveFromFieldOfView=function(t,e,r,n){var i=Math.tan(e.upDegrees*Math.PI/180),a=Math.tan(e.downDegrees*Math.PI/180),o=Math.tan(e.leftDegrees*Math.PI/180),s=Math.tan(e.rightDegrees*Math.PI/180),l=2/(o+s),c=2/(i+a);return t[0]=l,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=c,t[6]=0,t[7]=0,t[8]=-(o-s)*l*.5,t[9]=(i-a)*c*.5,t[10]=n/(r-n),t[11]=-1,t[12]=0,t[13]=0,t[14]=n*r/(r-n),t[15]=0,t},e.ortho=function(t,e,r,n,i,a,o){var s=1/(e-r),l=1/(n-i),c=1/(a-o);return t[0]=-2*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=-2*l,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=2*c,t[11]=0,t[12]=(e+r)*s,t[13]=(i+n)*l,t[14]=(o+a)*c,t[15]=1,t},e.lookAt=function(t,e,r,i){var a=void 0,o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<n.EPSILON&&Math.abs(v-w)<n.EPSILON&&Math.abs(g-M)<n.EPSILON)return mat4.identity(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t},e.targetTo=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=n[0],l=n[1],c=n[2],u=i-r[0],f=a-r[1],h=o-r[2],d=u*u+f*f+h*h;d>0&&(d=1/Math.sqrt(d),u*=d,f*=d,h*=d);var p=l*h-c*f,m=c*u-s*h,v=s*f-l*u;return t[0]=p,t[1]=m,t[2]=v,t[3]=0,t[4]=f*v-h*m,t[5]=h*p-u*v,t[6]=u*m-f*p,t[7]=0,t[8]=u,t[9]=f,t[10]=h,t[11]=0,t[12]=i,t[13]=a,t[14]=o,t[15]=1,t},e.str=function(t){return"mat4("+t[0]+", "+t[1]+", "+t[2]+", "+t[3]+", "+t[4]+", "+t[5]+", "+t[6]+", "+t[7]+", "+t[8]+", "+t[9]+", "+t[10]+", "+t[11]+", "+t[12]+", "+t[13]+", "+t[14]+", "+t[15]+")"},e.frob=function(t){return Math.sqrt(Math.pow(t[0],2)+Math.pow(t[1],2)+Math.pow(t[2],2)+Math.pow(t[3],2)+Math.pow(t[4],2)+Math.pow(t[5],2)+Math.pow(t[6],2)+Math.pow(t[7],2)+Math.pow(t[8],2)+Math.pow(t[9],2)+Math.pow(t[10],2)+Math.pow(t[11],2)+Math.pow(t[12],2)+Math.pow(t[13],2)+Math.pow(t[14],2)+Math.pow(t[15],2))},e.add=function(t,e,r){return t[0]=e[0]+r[0],t[1]=e[1]+r[1],t[2]=e[2]+r[2],t[3]=e[3]+r[3],t[4]=e[4]+r[4],t[5]=e[5]+r[5],t[6]=e[6]+r[6],t[7]=e[7]+r[7],t[8]=e[8]+r[8],t[9]=e[9]+r[9],t[10]=e[10]+r[10],t[11]=e[11]+r[11],t[12]=e[12]+r[12],t[13]=e[13]+r[13],t[14]=e[14]+r[14],t[15]=e[15]+r[15],t},e.subtract=a,e.multiplyScalar=function(t,e,r){return t[0]=e[0]*r,t[1]=e[1]*r,t[2]=e[2]*r,t[3]=e[3]*r,t[4]=e[4]*r,t[5]=e[5]*r,t[6]=e[6]*r,t[7]=e[7]*r,t[8]=e[8]*r,t[9]=e[9]*r,t[10]=e[10]*r,t[11]=e[11]*r,t[12]=e[12]*r,t[13]=e[13]*r,t[14]=e[14]*r,t[15]=e[15]*r,t},e.multiplyScalarAndAdd=function(t,e,r,n){return t[0]=e[0]+r[0]*n,t[1]=e[1]+r[1]*n,t[2]=e[2]+r[2]*n,t[3]=e[3]+r[3]*n,t[4]=e[4]+r[4]*n,t[5]=e[5]+r[5]*n,t[6]=e[6]+r[6]*n,t[7]=e[7]+r[7]*n,t[8]=e[8]+r[8]*n,t[9]=e[9]+r[9]*n,t[10]=e[10]+r[10]*n,t[11]=e[11]+r[11]*n,t[12]=e[12]+r[12]*n,t[13]=e[13]+r[13]*n,t[14]=e[14]+r[14]*n,t[15]=e[15]+r[15]*n,t},e.exactEquals=function(t,e){return t[0]===e[0]&&t[1]===e[1]&&t[2]===e[2]&&t[3]===e[3]&&t[4]===e[4]&&t[5]===e[5]&&t[6]===e[6]&&t[7]===e[7]&&t[8]===e[8]&&t[9]===e[9]&&t[10]===e[10]&&t[11]===e[11]&&t[12]===e[12]&&t[13]===e[13]&&t[14]===e[14]&&t[15]===e[15]},e.equals=function(t,e){var r=t[0],i=t[1],a=t[2],o=t[3],s=t[4],l=t[5],c=t[6],u=t[7],f=t[8],h=t[9],d=t[10],p=t[11],m=t[12],v=t[13],g=t[14],y=t[15],b=e[0],x=e[1],_=e[2],w=e[3],M=e[4],k=e[5],A=e[6],T=e[7],E=e[8],S=e[9],L=e[10],C=e[11],P=e[12],z=e[13],O=e[14],D=e[15];return Math.abs(r-b)<=n.EPSILON*Math.max(1,Math.abs(r),Math.abs(b))&&Math.abs(i-x)<=n.EPSILON*Math.max(1,Math.abs(i),Math.abs(x))&&Math.abs(a-_)<=n.EPSILON*Math.max(1,Math.abs(a),Math.abs(_))&&Math.abs(o-w)<=n.EPSILON*Math.max(1,Math.abs(o),Math.abs(w))&&Math.abs(s-M)<=n.EPSILON*Math.max(1,Math.abs(s),Math.abs(M))&&Math.abs(l-k)<=n.EPSILON*Math.max(1,Math.abs(l),Math.abs(k))&&Math.abs(c-A)<=n.EPSILON*Math.max(1,Math.abs(c),Math.abs(A))&&Math.abs(u-T)<=n.EPSILON*Math.max(1,Math.abs(u),Math.abs(T))&&Math.abs(f-E)<=n.EPSILON*Math.max(1,Math.abs(f),Math.abs(E))&&Math.abs(h-S)<=n.EPSILON*Math.max(1,Math.abs(h),Math.abs(S))&&Math.abs(d-L)<=n.EPSILON*Math.max(1,Math.abs(d),Math.abs(L))&&Math.abs(p-C)<=n.EPSILON*Math.max(1,Math.abs(p),Math.abs(C))&&Math.abs(m-P)<=n.EPSILON*Math.max(1,Math.abs(m),Math.abs(P))&&Math.abs(v-z)<=n.EPSILON*Math.max(1,Math.abs(v),Math.abs(z))&&Math.abs(g-O)<=n.EPSILON*Math.max(1,Math.abs(g),Math.abs(O))&&Math.abs(y-D)<=n.EPSILON*Math.max(1,Math.abs(y),Math.abs(D))};var 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f_normal\n           , f_lightDirection\n           , f_eyeDirection\n           , f_data;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(f_normal);\n  vec3 L = normalize(f_lightDirection);\n  vec3 V = normalize(f_eyeDirection);\n  \n  if(!gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = cookTorranceSpecular(L, V, N, roughness, fresnel);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  vec4 surfaceColor = f_color * texture2D(texture, f_uv);\n  vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular,  1.0);\n\n  gl_FragColor = litColor * opacity;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\n\nuniform mat4 model, view, projection;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_color = color;\n  f_data  = position;\n  f_uv    = uv;\n}"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 clipBounds[2];\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\nattribute float pointSize;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position = projection * view * model * vec4(position, 1.0);\n  }\n  gl_PointSize = pointSize;\n  f_color = color;\n  f_uv = uv;\n}"]),c=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  vec2 pointR = gl_PointCoord.xy - vec2(0.5,0.5);\n  if(dot(pointR, pointR) > 0.25) {\n    discard;\n  }\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_id        = id;\n  f_position  = position;\n}"]),f=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3  clipBounds[2];\nuniform float pickId;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(f_position, clipBounds[0])) || \n     any(greaterThan(f_position, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId, f_id.xyz);\n}"]),h=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3  position;\nattribute float pointSize;\nattribute vec4  id;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position  = projection * view * model * vec4(position, 1.0);\n    gl_PointSize = pointSize;\n  }\n  f_id         = id;\n  f_position   = position;\n}"]),d=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n}"]),p=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 contourColor;\n\nvoid main() {\n  gl_FragColor = vec4(contourColor,1);\n}\n"]);r.meshShader={vertex:i,fragment:a,attributes:[{name:"position",type:"vec3"},{name:"normal",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.wireShader={vertex:o,fragment:s,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.pointShader={vertex:l,fragment:c,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"},{name:"pointSize",type:"float"}]},r.pickShader={vertex:u,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"id",type:"vec4"}]},r.pointPickShader={vertex:h,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"pointSize",type:"float"},{name:"id",type:"vec4"}]},r.contourShader={vertex:d,fragment:p,attributes:[{name:"position",type:"vec3"}]}},{glslify:253}],201:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("normals"),l=t("gl-mat4/multiply"),c=t("gl-mat4/invert"),u=t("ndarray"),f=t("colormap"),h=t("simplicial-complex-contour"),d=t("typedarray-pool"),p=t("./lib/shaders"),m=t("./lib/closest-point"),v=p.meshShader,g=p.wireShader,y=p.pointShader,b=p.pickShader,x=p.pointPickShader,_=p.contourShader,w=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function M(t,e,r,n,i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,M,k,A,T,E){this.gl=t,this.cells=[],this.positions=[],this.intensity=[],this.texture=e,this.dirty=!0,this.triShader=r,this.lineShader=n,this.pointShader=i,this.pickShader=a,this.pointPickShader=o,this.contourShader=s,this.trianglePositions=l,this.triangleColors=u,this.triangleNormals=h,this.triangleUVs=f,this.triangleIds=c,this.triangleVAO=d,this.triangleCount=0,this.lineWidth=1,this.edgePositions=p,this.edgeColors=v,this.edgeUVs=g,this.edgeIds=m,this.edgeVAO=y,this.edgeCount=0,this.pointPositions=b,this.pointColors=_,this.pointUVs=M,this.pointSizes=k,this.pointIds=x,this.pointVAO=A,this.pointCount=0,this.contourLineWidth=1,this.contourPositions=T,this.contourVAO=E,this.contourCount=0,this.contourColor=[0,0,0],this.contourEnable=!0,this.pickId=1,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.lightPosition=[1e5,1e5,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.opacity=1,this._model=w,this._view=w,this._projection=w,this._resolution=[1,1]}var k=M.prototype;function A(t){var e=n(t,y.vertex,y.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.pointSize.location=4,e}function T(t){var e=n(t,b.vertex,b.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e}function E(t){var e=n(t,x.vertex,x.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e.attributes.pointSize.location=4,e}function S(t){var e=n(t,_.vertex,_.fragment);return e.attributes.position.location=0,e}k.isOpaque=function(){return this.opacity>=1},k.isTransparent=function(){return this.opacity<1},k.pickSlots=1,k.setPickBase=function(t){this.pickId=t},k.highlight=function(t){if(t&&this.contourEnable){for(var e=h(this.cells,this.intensity,t.intensity),r=e.cells,n=e.vertexIds,i=e.vertexWeights,a=r.length,o=d.mallocFloat32(6*a),s=0,l=0;l<a;++l)for(var c=r[l],u=0;u<2;++u){var f=c[0];2===c.length&&(f=c[u]);for(var p=n[f][0],m=n[f][1],v=i[f],g=1-v,y=this.positions[p],b=this.positions[m],x=0;x<3;++x)o[s++]=v*y[x]+g*b[x]}this.contourCount=s/3|0,this.contourPositions.update(o.subarray(0,s)),d.free(o)}else this.contourCount=0},k.update=function(t){t=t||{};var e=this.gl;this.dirty=!0,"contourEnable"in t&&(this.contourEnable=t.contourEnable),"contourColor"in t&&(this.contourColor=t.contourColor),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"lightPosition"in t&&(this.lightPosition=t.lightPosition),"opacity"in t&&(this.opacity=t.opacity),"ambient"in t&&(this.ambientLight=t.ambient),"diffuse"in t&&(this.diffuseLight=t.diffuse),"specular"in t&&(this.specularLight=t.specular),"roughness"in t&&(this.roughness=t.roughness),"fresnel"in t&&(this.fresnel=t.fresnel),t.texture?(this.texture.dispose(),this.texture=o(e,t.texture)):t.colormap&&(this.texture.shape=[256,256],this.texture.minFilter=e.LINEAR_MIPMAP_LINEAR,this.texture.magFilter=e.LINEAR,this.texture.setPixels(function(t){for(var e=f({colormap:t,nshades:256,format:"rgba"}),r=new Uint8Array(1024),n=0;n<256;++n){for(var i=e[n],a=0;a<3;++a)r[4*n+a]=i[a];r[4*n+3]=255*i[3]}return u(r,[256,256,4],[4,0,1])}(t.colormap)),this.texture.generateMipmap());var r=t.cells,n=t.positions;if(n&&r){var i=[],a=[],l=[],c=[],h=[],d=[],p=[],m=[],v=[],g=[],y=[],b=[],x=[],_=[];this.cells=r,this.positions=n;var w=t.vertexNormals,M=t.cellNormals,k=void 0===t.vertexNormalsEpsilon?1e-6:t.vertexNormalsEpsilon,A=void 0===t.faceNormalsEpsilon?1e-6:t.faceNormalsEpsilon;t.useFacetNormals&&!M&&(M=s.faceNormals(r,n,A)),M||w||(w=s.vertexNormals(r,n,k));var T=t.vertexColors,E=t.cellColors,S=t.meshColor||[1,1,1,1],L=t.vertexUVs,C=t.vertexIntensity,P=t.cellUVs,z=t.cellIntensity,O=1/0,D=-1/0;if(!L&&!P)if(C)if(t.vertexIntensityBounds)O=+t.vertexIntensityBounds[0],D=+t.vertexIntensityBounds[1];else for(var I=0;I<C.length;++I){var R=C[I];O=Math.min(O,R),D=Math.max(D,R)}else if(z)for(I=0;I<z.length;++I){R=z[I];O=Math.min(O,R),D=Math.max(D,R)}else for(I=0;I<n.length;++I){R=n[I][2];O=Math.min(O,R),D=Math.max(D,R)}this.intensity=C||(z?function(t,e,r){for(var n=new Array(e),i=0;i<e;++i)n[i]=0;var a=t.length;for(i=0;i<a;++i)for(var o=t[i],s=0;s<o.length;++s)n[o[s]]=r[i];return n}(r,n.length,z):function(t){for(var e=t.length,r=new Array(e),n=0;n<e;++n)r[n]=t[n][2];return r}(n));var N=t.pointSizes,F=t.pointSize||1;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(I=0;I<n.length;++I)for(var j=n[I],B=0;B<3;++B)!isNaN(j[B])&&isFinite(j[B])&&(this.bounds[0][B]=Math.min(this.bounds[0][B],j[B]),this.bounds[1][B]=Math.max(this.bounds[1][B],j[B]));var U=0,V=0,q=0;t:for(I=0;I<r.length;++I){var H=r[I];switch(H.length){case 1:for(j=n[Y=H[0]],B=0;B<3;++B)if(isNaN(j[B])||!isFinite(j[B]))continue t;g.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?y.push(W[0],W[1],W[2],1):y.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],b.push(X[0],X[1]),N?x.push(N[Y]):x.push(F),_.push(I),q+=1;break;case 2:for(B=0;B<2;++B){j=n[Y=H[B]];for(var G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t}for(B=0;B<2;++B){j=n[Y=H[B]];d.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?p.push(W[0],W[1],W[2],1):p.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],m.push(X[0],X[1]),v.push(I)}V+=1;break;case 3:for(B=0;B<3;++B)for(j=n[Y=H[B]],G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t;for(B=0;B<3;++B){var Y,W,X,Z;j=n[Y=H[B]];i.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?a.push(W[0],W[1],W[2],1):a.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],c.push(X[0],X[1]),Z=w?w[Y]:M[I],l.push(Z[0],Z[1],Z[2]),h.push(I)}U+=1}}this.pointCount=q,this.edgeCount=V,this.triangleCount=U,this.pointPositions.update(g),this.pointColors.update(y),this.pointUVs.update(b),this.pointSizes.update(x),this.pointIds.update(new Uint32Array(_)),this.edgePositions.update(d),this.edgeColors.update(p),this.edgeUVs.update(m),this.edgeIds.update(new Uint32Array(v)),this.trianglePositions.update(i),this.triangleColors.update(a),this.triangleUVs.update(c),this.triangleNormals.update(l),this.triangleIds.update(new Uint32Array(h))}},k.drawTransparent=k.draw=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);var s={model:r,view:n,projection:i,clipBounds:a,kambient:this.ambientLight,kdiffuse:this.diffuseLight,kspecular:this.specularLight,roughness:this.roughness,fresnel:this.fresnel,eyePosition:[0,0,0],lightPosition:[0,0,0],opacity:this.opacity,contourColor:this.contourColor,texture:0};this.texture.bind(0);var u=new Array(16);l(u,s.view,s.model),l(u,s.projection,u),c(u,u);for(o=0;o<3;++o)s.eyePosition[o]=u[12+o]/u[15];var f,h=u[15];for(o=0;o<3;++o)h+=this.lightPosition[o]*u[4*o+3];for(o=0;o<3;++o){for(var d=u[12+o],p=0;p<3;++p)d+=u[4*p+o]*this.lightPosition[p];s.lightPosition[o]=d/h}this.triangleCount>0&&((f=this.triShader).bind(),f.uniforms=s,this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind());this.edgeCount>0&&this.lineWidth>0&&((f=this.lineShader).bind(),f.uniforms=s,this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind());this.pointCount>0&&((f=this.pointShader).bind(),f.uniforms=s,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind());this.contourEnable&&this.contourCount>0&&this.contourLineWidth>0&&((f=this.contourShader).bind(),f.uniforms=s,this.contourVAO.bind(),e.drawArrays(e.LINES,0,this.contourCount),this.contourVAO.unbind())},k.drawPick=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);this._model=[].slice.call(r),this._view=[].slice.call(n),this._projection=[].slice.call(i),this._resolution=[e.drawingBufferWidth,e.drawingBufferHeight];var s,l={model:r,view:n,projection:i,clipBounds:a,pickId:this.pickId/255};((s=this.pickShader).bind(),s.uniforms=l,this.triangleCount>0&&(this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()),this.edgeCount>0&&(this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind()),this.pointCount>0)&&((s=this.pointPickShader).bind(),s.uniforms=l,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind())},k.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;for(var e=t.value[0]+256*t.value[1]+65536*t.value[2],r=this.cells[e],n=this.positions,i=new Array(r.length),a=0;a<r.length;++a)i[a]=n[r[a]];var o=m(i,[t.coord[0],this._resolution[1]-t.coord[1]],this._model,this._view,this._projection,this._resolution);if(!o)return null;var s=o[2],l=0;for(a=0;a<r.length;++a)l+=s[a]*this.intensity[r[a]];return{position:o[1],index:r[o[0]],cell:r,cellId:e,intensity:l,dataCoordinate:this.positions[r[o[0]]]}},k.dispose=function(){this.texture.dispose(),this.triShader.dispose(),this.lineShader.dispose(),this.pointShader.dispose(),this.pickShader.dispose(),this.pointPickShader.dispose(),this.triangleVAO.dispose(),this.trianglePositions.dispose(),this.triangleColors.dispose(),this.triangleUVs.dispose(),this.triangleNormals.dispose(),this.triangleIds.dispose(),this.edgeVAO.dispose(),this.edgePositions.dispose(),this.edgeColors.dispose(),this.edgeUVs.dispose(),this.edgeIds.dispose(),this.pointVAO.dispose(),this.pointPositions.dispose(),this.pointColors.dispose(),this.pointUVs.dispose(),this.pointSizes.dispose(),this.pointIds.dispose(),this.contourVAO.dispose(),this.contourPositions.dispose(),this.contourShader.dispose()},e.exports=function(t,e){1===arguments.length&&(t=(e=t).gl);var r=function(t){var e=n(t,v.vertex,v.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.normal.location=4,e}(t),s=function(t){var e=n(t,g.vertex,g.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e}(t),l=A(t),c=T(t),f=E(t),h=S(t),d=o(t,u(new Uint8Array([255,255,255,255]),[1,1,4]));d.generateMipmap(),d.minFilter=t.LINEAR_MIPMAP_LINEAR,d.magFilter=t.LINEAR;var p=i(t),m=i(t),y=i(t),b=i(t),x=i(t),_=a(t,[{buffer:p,type:t.FLOAT,size:3},{buffer:x,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:m,type:t.FLOAT,size:4},{buffer:y,type:t.FLOAT,size:2},{buffer:b,type:t.FLOAT,size:3}]),w=i(t),k=i(t),L=i(t),C=i(t),P=a(t,[{buffer:w,type:t.FLOAT,size:3},{buffer:C,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:k,type:t.FLOAT,size:4},{buffer:L,type:t.FLOAT,size:2}]),z=i(t),O=i(t),D=i(t),I=i(t),R=i(t),N=a(t,[{buffer:z,type:t.FLOAT,size:3},{buffer:R,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:O,type:t.FLOAT,size:4},{buffer:D,type:t.FLOAT,size:2},{buffer:I,type:t.FLOAT,size:1}]),F=i(t),j=new M(t,d,r,s,l,c,f,h,p,x,m,y,b,_,w,C,k,L,P,z,R,O,D,I,N,F,a(t,[{buffer:F,type:t.FLOAT,size:3}]));return j.update(e),j}},{"./lib/closest-point":199,"./lib/shaders":200,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-shader":220,"gl-texture2d":233,"gl-vao":237,ndarray:439,normals:442,"simplicial-complex-contour":504,"typedarray-pool":534}],202:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[0,0,0,1,1,0,1,1]),s=i(e,a.boxVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawBox=(s=[0,0],l=[0,0],function(t,e,r,n,i){var a=this.plot,o=this.shader,c=a.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,o.uniforms.lo=s,o.uniforms.hi=l,o.uniforms.color=i,c.drawArrays(c.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],203:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,o.gridVert,o.gridFrag),l=i(e,o.tickVert,o.gridFrag);return new s(t,r,a,l)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("binary-search-bounds"),o=t("./shaders");function s(t,e,r,n){this.plot=t,this.vbo=e,this.shader=r,this.tickShader=n,this.ticks=[[],[]]}function l(t,e){return t-e}var c,u,f,h,d,p=s.prototype;p.draw=(c=[0,0],u=[0,0],f=[0,0],function(){for(var t=this.plot,e=this.vbo,r=this.shader,n=this.ticks,i=t.gl,a=t._tickBounds,o=t.dataBox,s=t.viewBox,l=t.gridLineWidth,h=t.gridLineColor,d=t.gridLineEnable,p=t.pixelRatio,m=0;m<2;++m){var v=a[m],g=a[m+2]-v,y=.5*(o[m+2]+o[m]),b=o[m+2]-o[m];u[m]=2*g/b,c[m]=2*(v-y)/b}r.bind(),e.bind(),r.attributes.dataCoord.pointer(),r.uniforms.dataShift=c,r.uniforms.dataScale=u;var x=0;for(m=0;m<2;++m){f[0]=f[1]=0,f[m]=1,r.uniforms.dataAxis=f,r.uniforms.lineWidth=l[m]/(s[m+2]-s[m])*p,r.uniforms.color=h[m];var _=6*n[m].length;d[m]&&_&&i.drawArrays(i.TRIANGLES,x,_),x+=_}}),p.drawTickMarks=function(){var t=[0,0],e=[0,0],r=[1,0],n=[0,1],i=[0,0],o=[0,0];return function(){for(var s=this.plot,c=this.vbo,u=this.tickShader,f=this.ticks,h=s.gl,d=s._tickBounds,p=s.dataBox,m=s.viewBox,v=s.pixelRatio,g=s.screenBox,y=g[2]-g[0],b=g[3]-g[1],x=m[2]-m[0],_=m[3]-m[1],w=0;w<2;++w){var M=d[w],k=d[w+2]-M,A=.5*(p[w+2]+p[w]),T=p[w+2]-p[w];e[w]=2*k/T,t[w]=2*(M-A)/T}e[0]*=x/y,t[0]*=x/y,e[1]*=_/b,t[1]*=_/b,u.bind(),c.bind(),u.attributes.dataCoord.pointer();var E=u.uniforms;E.dataShift=t,E.dataScale=e;var S=s.tickMarkLength,L=s.tickMarkWidth,C=s.tickMarkColor,P=6*f[0].length,z=Math.min(a.ge(f[0],(p[0]-d[0])/(d[2]-d[0]),l),f[0].length),O=Math.min(a.gt(f[0],(p[2]-d[0])/(d[2]-d[0]),l),f[0].length),D=0+6*z,I=6*Math.max(0,O-z),R=Math.min(a.ge(f[1],(p[1]-d[1])/(d[3]-d[1]),l),f[1].length),N=Math.min(a.gt(f[1],(p[3]-d[1])/(d[3]-d[1]),l),f[1].length),F=P+6*R,j=6*Math.max(0,N-R);i[0]=2*(m[0]-S[1])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[1]*v/y,o[1]=L[1]*v/b,j&&(E.color=C[1],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[1]-S[0])/b-1,o[0]=L[0]*v/y,o[1]=S[0]*v/b,I&&(E.color=C[0],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I)),i[0]=2*(m[2]+S[3])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[3]*v/y,o[1]=L[3]*v/b,j&&(E.color=C[3],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[3]+S[2])/b-1,o[0]=L[2]*v/y,o[1]=S[2]*v/b,I&&(E.color=C[2],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I))}}(),p.update=(h=[1,1,-1,-1,1,-1],d=[1,-1,1,1,-1,-1],function(t){for(var e=t.ticks,r=t.bounds,n=new Float32Array(18*(e[0].length+e[1].length)),i=(this.plot.zeroLineEnable,0),a=[[],[]],o=0;o<2;++o)for(var s=a[o],l=e[o],c=r[o],u=r[o+2],f=0;f<l.length;++f){var p=(l[f].x-c)/(u-c);s.push(p);for(var m=0;m<6;++m)n[i++]=p,n[i++]=h[m],n[i++]=d[m]}this.ticks=a,this.vbo.update(n)}),p.dispose=function(){this.vbo.dispose(),this.shader.dispose(),this.tickShader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220}],204:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[-1,-1,-1,1,1,-1,1,1]),s=i(e,a.lineVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawLine=(s=[0,0],l=[0,0],function(t,e,r,n,i,a){var o=this.plot,c=this.shader,u=o.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,c.uniforms.start=s,c.uniforms.end=l,c.uniforms.width=i*o.pixelRatio,c.uniforms.color=a,u.drawArrays(u.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],205:[function(t,e,r){"use strict";var n=t("glslify"),i=n(["precision lowp float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = vec4(color.xyz * color.w, color.w);\n}\n"]);e.exports={lineVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 start, end;\nuniform float width;\n\nvec2 perp(vec2 v) {\n  return vec2(v.y, -v.x);\n}\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  vec2 delta = normalize(perp(start - end));\n  vec2 offset = mix(start, end, 0.5 * (coord.y+1.0));\n  gl_Position = vec4(screen(offset + 0.5 * width * delta * coord.x), 0, 1);\n}\n"]),lineFrag:i,textVert:n(["#define GLSLIFY 1\nattribute vec3 textCoordinate;\n\nuniform vec2 dataScale, dataShift, dataAxis, screenOffset, textScale;\nuniform float angle;\n\nvoid main() {\n  float dataOffset  = textCoordinate.z;\n  vec2 glyphOffset  = textCoordinate.xy;\n  mat2 glyphMatrix = mat2(cos(angle), sin(angle), -sin(angle), cos(angle));\n  vec2 screenCoordinate = dataAxis * (dataScale * dataOffset + dataShift) +\n    glyphMatrix * glyphOffset * textScale + screenOffset;\n  gl_Position = vec4(screenCoordinate, 0, 1);\n}\n"]),textFrag:i,gridVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale;\nuniform float lineWidth;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  pos += 10.0 * dataCoord.y * vec2(dataAxis.y, -dataAxis.x) + dataCoord.z * lineWidth;\n  gl_Position = vec4(pos, 0, 1);\n}\n"]),gridFrag:i,boxVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 lo, hi;\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  gl_Position = vec4(screen(mix(lo, hi, coord)), 0, 1);\n}\n"]),tickVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale, screenOffset, tickScale;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  gl_Position = vec4(pos + tickScale*dataCoord.yz + screenOffset, 0, 1);\n}\n"])}},{glslify:253}],206:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,s.textVert,s.textFrag);return new l(t,r,a)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("text-cache"),o=t("binary-search-bounds"),s=t("./shaders");function l(t,e,r){this.plot=t,this.vbo=e,this.shader=r,this.tickOffset=[[],[]],this.tickX=[[],[]],this.labelOffset=[0,0],this.labelCount=[0,0]}var c,u,f,h,d,p,m=l.prototype;m.drawTicks=(c=[0,0],u=[0,0],f=[0,0],function(t){var e=this.plot,r=this.shader,n=this.tickX[t],i=this.tickOffset[t],a=e.gl,s=e.viewBox,l=e.dataBox,h=e.screenBox,d=e.pixelRatio,p=e.tickEnable,m=e.tickPad,v=e.tickColor,g=e.tickAngle,y=e.labelEnable,b=e.labelPad,x=e.labelColor,_=e.labelAngle,w=this.labelOffset[t],M=this.labelCount[t],k=o.lt(n,l[t]),A=o.le(n,l[t+2]);c[0]=c[1]=0,c[t]=1,u[t]=(s[2+t]+s[t])/(h[2+t]-h[t])-1;var T=2/h[2+(1^t)]-h[1^t];u[1^t]=T*s[1^t]-1,p[t]&&(u[1^t]-=T*d*m[t],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t],r.uniforms.angle=g[t],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t]&&M&&(u[1^t]-=T*d*b[t],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t],r.uniforms.angle=_[t],a.drawArrays(a.TRIANGLES,w,M)),u[1^t]=T*s[2+(1^t)]-1,p[t+2]&&(u[1^t]+=T*d*m[t+2],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t+2],r.uniforms.angle=g[t+2],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t+2]&&M&&(u[1^t]+=T*d*b[t+2],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t+2],r.uniforms.angle=_[t+2],a.drawArrays(a.TRIANGLES,w,M))}),m.drawTitle=function(){var t=[0,0],e=[0,0];return function(){var r=this.plot,n=this.shader,i=r.gl,a=r.screenBox,o=r.titleCenter,s=r.titleAngle,l=r.titleColor,c=r.pixelRatio;if(this.titleCount){for(var u=0;u<2;++u)e[u]=2*(o[u]*c-a[u])/(a[2+u]-a[u])-1;n.bind(),n.uniforms.dataAxis=t,n.uniforms.screenOffset=e,n.uniforms.angle=s,n.uniforms.color=l,i.drawArrays(i.TRIANGLES,this.titleOffset,this.titleCount)}}}(),m.bind=(h=[0,0],d=[0,0],p=[0,0],function(){var t=this.plot,e=this.shader,r=t._tickBounds,n=t.dataBox,i=t.screenBox,a=t.viewBox;e.bind();for(var o=0;o<2;++o){var s=r[o],l=r[o+2]-s,c=.5*(n[o+2]+n[o]),u=n[o+2]-n[o],f=a[o],m=a[o+2]-f,v=i[o],g=i[o+2]-v;d[o]=2*l/u*m/g,h[o]=2*(s-c)/u*m/g}p[1]=2*t.pixelRatio/(i[3]-i[1]),p[0]=p[1]*(i[3]-i[1])/(i[2]-i[0]),e.uniforms.dataScale=d,e.uniforms.dataShift=h,e.uniforms.textScale=p,this.vbo.bind(),e.attributes.textCoordinate.pointer()}),m.update=function(t){var e,r,n,i,o,s=[],l=t.ticks,c=t.bounds;for(o=0;o<2;++o){var u=[Math.floor(s.length/3)],f=[-1/0],h=l[o];for(e=0;e<h.length;++e){var d=h[e],p=d.x,m=d.text,v=d.font||"sans-serif";i=d.fontSize||12;for(var g=1/(c[o+2]-c[o]),y=c[o],b=m.split("\n"),x=0;x<b.length;x++)for(n=a(v,b[x]).data,r=0;r<n.length;r+=2)s.push(n[r]*i,-n[r+1]*i-x*i*1.2,(p-y)*g);u.push(Math.floor(s.length/3)),f.push(p)}this.tickOffset[o]=u,this.tickX[o]=f}for(o=0;o<2;++o){for(this.labelOffset[o]=Math.floor(s.length/3),n=a(t.labelFont[o],t.labels[o],{textAlign:"center"}).data,i=t.labelSize[o],e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.labelCount[o]=Math.floor(s.length/3)-this.labelOffset[o]}for(this.titleOffset=Math.floor(s.length/3),n=a(t.titleFont,t.title).data,i=t.titleSize,e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.titleCount=Math.floor(s.length/3)-this.titleOffset,this.vbo.update(s)},m.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220,"text-cache":525}],207:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],208:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[e.drawingBufferWidth,e.drawingBufferHeight]),c=new l(e,r);return c.grid=i(c),c.text=a(c),c.line=o(c),c.box=s(c),c.update(t),c};var n=t("gl-select-static"),i=t("./lib/grid"),a=t("./lib/text"),o=t("./lib/line"),s=t("./lib/box");function l(t,e){this.gl=t,this.pickBuffer=e,this.screenBox=[0,0,t.drawingBufferWidth,t.drawingBufferHeight],this.viewBox=[0,0,0,0],this.dataBox=[-10,-10,10,10],this.gridLineEnable=[!0,!0],this.gridLineWidth=[1,1],this.gridLineColor=[[0,0,0,1],[0,0,0,1]],this.pixelRatio=1,this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickEnable=[!0,!0,!0,!0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[15,15,15,15],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelEnable=[!0,!0,!0,!0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.titleCenter=[0,0],this.titleEnable=!0,this.titleAngle=0,this.titleColor=[0,0,0,1],this.borderColor=[0,0,0,0],this.backgroundColor=[0,0,0,0],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[4,4],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderLineEnable=[!0,!0,!0,!0],this.borderLineWidth=[2,2,2,2],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.grid=null,this.text=null,this.line=null,this.box=null,this.objects=[],this.overlays=[],this._tickBounds=[1/0,1/0,-1/0,-1/0],this.static=!1,this.dirty=!1,this.pickDirty=!1,this.pickDelay=120,this.pickRadius=10,this._pickTimeout=null,this._drawPick=this.drawPick.bind(this),this._depthCounter=0}var c=l.prototype;function u(t){for(var e=t.slice(),r=0;r<e.length;++r)e[r]=e[r].slice();return e}function f(t,e){return t.x-e.x}c.setDirty=function(){this.dirty=this.pickDirty=!0},c.setOverlayDirty=function(){this.dirty=!0},c.nextDepthValue=function(){return this._depthCounter++/65536},c.draw=function(){var t=this.gl,e=this.screenBox,r=this.viewBox,n=this.dataBox,i=this.pixelRatio,a=this.grid,o=this.line,s=this.text,l=this.objects;if(this._depthCounter=0,this.pickDirty&&(this._pickTimeout&&clearTimeout(this._pickTimeout),this.pickDirty=!1,this._pickTimeout=setTimeout(this._drawPick,this.pickDelay)),this.dirty){if(this.dirty=!1,t.bindFramebuffer(t.FRAMEBUFFER,null),t.enable(t.SCISSOR_TEST),t.disable(t.DEPTH_TEST),t.depthFunc(t.LESS),t.depthMask(!1),t.enable(t.BLEND),t.blendEquation(t.FUNC_ADD,t.FUNC_ADD),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),this.borderColor){t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]);var c=this.borderColor;t.clearColor(c[0]*c[3],c[1]*c[3],c[2]*c[3],c[3]),t.clear(t.COLOR_BUFFER_BIT|t.DEPTH_BUFFER_BIT)}t.scissor(r[0],r[1],r[2]-r[0],r[3]-r[1]),t.viewport(r[0],r[1],r[2]-r[0],r[3]-r[1]);var u=this.backgroundColor;t.clearColor(u[0]*u[3],u[1]*u[3],u[2]*u[3],u[3]),t.clear(t.COLOR_BUFFER_BIT),a.draw();var f=this.zeroLineEnable,h=this.zeroLineColor,d=this.zeroLineWidth;if(f[0]||f[1]){o.bind();for(var p=0;p<2;++p)if(f[p]&&n[p]<=0&&n[p+2]>=0){var m=e[p]-n[p]*(e[p+2]-e[p])/(n[p+2]-n[p]);0===p?o.drawLine(m,e[1],m,e[3],d[p],h[p]):o.drawLine(e[0],m,e[2],m,d[p],h[p])}}for(p=0;p<l.length;++p)l[p].draw();t.viewport(e[0],e[1],e[2]-e[0],e[3]-e[1]),t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]),this.grid.drawTickMarks(),o.bind();var v=this.borderLineEnable,g=this.borderLineWidth,y=this.borderLineColor;for(v[1]&&o.drawLine(r[0],r[1]-.5*g[1]*i,r[0],r[3]+.5*g[3]*i,g[1],y[1]),v[0]&&o.drawLine(r[0]-.5*g[0]*i,r[1],r[2]+.5*g[2]*i,r[1],g[0],y[0]),v[3]&&o.drawLine(r[2],r[1]-.5*g[1]*i,r[2],r[3]+.5*g[3]*i,g[3],y[3]),v[2]&&o.drawLine(r[0]-.5*g[0]*i,r[3],r[2]+.5*g[2]*i,r[3],g[2],y[2]),s.bind(),p=0;p<2;++p)s.drawTicks(p);this.titleEnable&&s.drawTitle();var b=this.overlays;for(p=0;p<b.length;++p)b[p].draw();t.disable(t.SCISSOR_TEST),t.disable(t.BLEND),t.depthMask(!0)}},c.drawPick=function(){if(!this.static){var t=this.pickBuffer;this.gl;this._pickTimeout=null,t.begin();for(var e=1,r=this.objects,n=0;n<r.length;++n)e=r[n].drawPick(e);t.end()}},c.pick=function(t,e){if(!this.static){var r=this.pixelRatio,n=this.pickPixelRatio,i=this.viewBox,a=0|Math.round((t-i[0]/r)*n),o=0|Math.round((e-i[1]/r)*n),s=this.pickBuffer.query(a,o,this.pickRadius);if(!s)return null;for(var l=s.id+(s.value[0]<<8)+(s.value[1]<<16)+(s.value[2]<<24),c=this.objects,u=0;u<c.length;++u){var f=c[u].pick(a,o,l);if(f)return f}return null}},c.setScreenBox=function(t){var e=this.screenBox,r=this.pixelRatio;e[0]=0|Math.round(t[0]*r),e[1]=0|Math.round(t[1]*r),e[2]=0|Math.round(t[2]*r),e[3]=0|Math.round(t[3]*r),this.setDirty()},c.setDataBox=function(t){var e=this.dataBox;(e[0]!==t[0]||e[1]!==t[1]||e[2]!==t[2]||e[3]!==t[3])&&(e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],this.setDirty())},c.setViewBox=function(t){var e=this.pixelRatio,r=this.viewBox;r[0]=0|Math.round(t[0]*e),r[1]=0|Math.round(t[1]*e),r[2]=0|Math.round(t[2]*e),r[3]=0|Math.round(t[3]*e);var n=this.pickPixelRatio;this.pickBuffer.shape=[0|Math.round((t[2]-t[0])*n),0|Math.round((t[3]-t[1])*n)],this.setDirty()},c.update=function(t){t=t||{};var e=this.gl;this.pixelRatio=t.pixelRatio||1;var r=this.pixelRatio;this.pickPixelRatio=Math.max(r,1),this.setScreenBox(t.screenBox||[0,0,e.drawingBufferWidth/r,e.drawingBufferHeight/r]);this.screenBox;this.setViewBox(t.viewBox||[.125*(this.screenBox[2]-this.screenBox[0])/r,.125*(this.screenBox[3]-this.screenBox[1])/r,.875*(this.screenBox[2]-this.screenBox[0])/r,.875*(this.screenBox[3]-this.screenBox[1])/r]);var n=this.viewBox,i=(n[2]-n[0])/(n[3]-n[1]);this.setDataBox(t.dataBox||[-10,-10/i,10,10/i]),this.borderColor=!1!==t.borderColor&&(t.borderColor||[0,0,0,0]).slice(),this.backgroundColor=(t.backgroundColor||[0,0,0,0]).slice(),this.gridLineEnable=(t.gridLineEnable||[!0,!0]).slice(),this.gridLineWidth=(t.gridLineWidth||[1,1]).slice(),this.gridLineColor=u(t.gridLineColor||[[.5,.5,.5,1],[.5,.5,.5,1]]),this.zeroLineEnable=(t.zeroLineEnable||[!0,!0]).slice(),this.zeroLineWidth=(t.zeroLineWidth||[4,4]).slice(),this.zeroLineColor=u(t.zeroLineColor||[[0,0,0,1],[0,0,0,1]]),this.tickMarkLength=(t.tickMarkLength||[0,0,0,0]).slice(),this.tickMarkWidth=(t.tickMarkWidth||[0,0,0,0]).slice(),this.tickMarkColor=u(t.tickMarkColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.titleCenter=(t.titleCenter||[.5*(n[0]+n[2])/r,(n[3]+120)/r]).slice(),this.titleEnable=!("titleEnable"in t&&!t.titleEnable),this.titleAngle=t.titleAngle||0,this.titleColor=(t.titleColor||[0,0,0,1]).slice(),this.labelPad=(t.labelPad||[15,15,15,15]).slice(),this.labelAngle=(t.labelAngle||[0,Math.PI/2,0,3*Math.PI/2]).slice(),this.labelEnable=(t.labelEnable||[!0,!0,!0,!0]).slice(),this.labelColor=u(t.labelColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.tickPad=(t.tickPad||[15,15,15,15]).slice(),this.tickAngle=(t.tickAngle||[0,0,0,0]).slice(),this.tickEnable=(t.tickEnable||[!0,!0,!0,!0]).slice(),this.tickColor=u(t.tickColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.borderLineEnable=(t.borderLineEnable||[!0,!0,!0,!0]).slice(),this.borderLineWidth=(t.borderLineWidth||[2,2,2,2]).slice(),this.borderLineColor=u(t.borderLineColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]);var a=t.ticks||[[],[]],o=this._tickBounds;o[0]=o[1]=1/0,o[2]=o[3]=-1/0;for(var s=0;s<2;++s){var l=a[s].slice(0);0!==l.length&&(l.sort(f),o[s]=Math.min(o[s],l[0].x),o[s+2]=Math.max(o[s+2],l[l.length-1].x))}this.grid.update({bounds:o,ticks:a}),this.text.update({bounds:o,ticks:a,labels:t.labels||["x","y"],labelSize:t.labelSize||[12,12],labelFont:t.labelFont||["sans-serif","sans-serif"],title:t.title||"",titleSize:t.titleSize||18,titleFont:t.titleFont||"sans-serif"}),this.static=!!t.static,this.setDirty()},c.dispose=function(){this.box.dispose(),this.grid.dispose(),this.text.dispose(),this.line.dispose();for(var t=this.objects.length-1;t>=0;--t)this.objects[t].dispose();this.objects.length=0;for(t=this.overlays.length-1;t>=0;--t)this.overlays[t].dispose();this.overlays.length=0,this.gl=null},c.addObject=function(t){this.objects.indexOf(t)<0&&(this.objects.push(t),this.setDirty())},c.removeObject=function(t){for(var e=this.objects,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setDirty();break}},c.addOverlay=function(t){this.overlays.indexOf(t)<0&&(this.overlays.push(t),this.setOverlayDirty())},c.removeOverlay=function(t){for(var e=this.overlays,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setOverlayDirty();break}}},{"./lib/box":202,"./lib/grid":203,"./lib/line":204,"./lib/text":206,"gl-select-static":219}],209:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\nattribute vec2 position;\nvarying vec2 uv;\nvoid main() {\n  uv = position;\n  gl_Position = vec4(position, 0, 1);\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D accumBuffer;\nvarying vec2 uv;\n\nvoid main() {\n  vec4 accum = texture2D(accumBuffer, 0.5 * (uv + 1.0));\n  gl_FragColor = min(vec4(1,1,1,1), accum);\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec2"}])}},{"gl-shader":220,glslify:253}],210:[function(t,e,r){"use strict";e.exports=function(t){var e=!1,r=((t=t||{}).pixelRatio||parseFloat(window.devicePixelRatio),t.canvas);if(!r)if(r=document.createElement("canvas"),t.container){var v=t.container;v.appendChild(r)}else document.body.appendChild(r);var g=t.gl;g||(g=function(t,e){var r=null;try{(r=t.getContext("webgl",e))||(r=t.getContext("experimental-webgl",e))}catch(t){return null}return r}(r,t.glOptions||{premultipliedAlpha:!0,antialias:!0}));if(!g)throw new Error("webgl not supported");var y=t.bounds||[[-10,-10,-10],[10,10,10]],b=new function(){this.mouse=[-1,-1],this.screen=null,this.distance=1/0,this.index=null,this.dataCoordinate=null,this.dataPosition=null,this.object=null,this.data=null},x=l(g,[g.drawingBufferWidth,g.drawingBufferHeight],{preferFloat:!d}),_=h(g),w=t.camera||{eye:[2,0,0],center:[0,0,0],up:[0,1,0],zoomMin:.1,zoomMax:100,mode:"turntable"},M=t.axes||{},k=i(g,M);k.enable=!M.disable;var A=t.spikes||{},T=o(g,A),E=[],S=[],L=[],C=[],P=!0,z=!0,O=new Array(16),D=new Array(16),I={view:null,projection:O,model:D},z=!0,R=[g.drawingBufferWidth,g.drawingBufferHeight],N={gl:g,contextLost:!1,pixelRatio:t.pixelRatio||parseFloat(window.devicePixelRatio),canvas:r,selection:b,camera:n(r,w),axes:k,axesPixels:null,spikes:T,bounds:y,objects:E,shape:R,aspect:t.aspectRatio||[1,1,1],pickRadius:t.pickRadius||10,zNear:t.zNear||.01,zFar:t.zFar||1e3,fovy:t.fovy||Math.PI/4,clearColor:t.clearColor||[0,0,0,0],autoResize:m(t.autoResize),autoBounds:m(t.autoBounds),autoScale:!!t.autoScale,autoCenter:m(t.autoCenter),clipToBounds:m(t.clipToBounds),snapToData:!!t.snapToData,onselect:t.onselect||null,onrender:t.onrender||null,onclick:t.onclick||null,cameraParams:I,oncontextloss:null,mouseListener:null},F=[g.drawingBufferWidth/N.pixelRatio|0,g.drawingBufferHeight/N.pixelRatio|0];function j(){if(!e&&N.autoResize){var t=r.parentNode,n=1,i=1;t&&t!==document.body?(n=t.clientWidth,i=t.clientHeight):(n=window.innerWidth,i=window.innerHeight);var a=0|Math.ceil(n*N.pixelRatio),o=0|Math.ceil(i*N.pixelRatio);if(a!==r.width||o!==r.height){r.width=a,r.height=o;var s=r.style;s.position=s.position||"absolute",s.left="0px",s.top="0px",s.width=n+"px",s.height=i+"px",P=!0}}}N.autoResize&&j();function B(){for(var t=E.length,e=C.length,r=0;r<e;++r)L[r]=0;t:for(var r=0;r<t;++r){var n=E[r],i=n.pickSlots;if(i){for(var a=0;a<e;++a)if(L[a]+i<255){S[r]=a,n.setPickBase(L[a]+1),L[a]+=i;continue t}var o=s(g,R);S[r]=e,C.push(o),L.push(i),n.setPickBase(1),e+=1}else S[r]=-1}for(;e>0&&0===L[e-1];)L.pop(),C.pop().dispose()}window.addEventListener("resize",j),N.update=function(t){e||(t=t||{},P=!0,z=!0)},N.add=function(t){e||(t.axes=k,E.push(t),S.push(-1),P=!0,z=!0,B())},N.remove=function(t){if(!e){var r=E.indexOf(t);r<0||(E.splice(r,1),S.pop(),P=!0,z=!0,B())}},N.dispose=function(){if(!e&&(e=!0,window.removeEventListener("resize",j),r.removeEventListener("webglcontextlost",q),N.mouseListener.enabled=!1,!N.contextLost)){k.dispose(),T.dispose();for(var t=0;t<E.length;++t)E[t].dispose();x.dispose();for(var t=0;t<C.length;++t)C[t].dispose();_.dispose(),g=null,k=null,T=null,E=[]}};var U=!1,V=0;function q(){if(N.contextLost)return!0;g.isContextLost()&&(N.contextLost=!0,N.mouseListener.enabled=!1,N.selection.object=null,N.oncontextloss&&N.oncontextloss())}N.mouseListener=u(r,function(t,r,n){if(!e){var i=C.length,a=E.length,o=b.object;b.distance=1/0,b.mouse[0]=r,b.mouse[1]=n,b.object=null,b.screen=null,b.dataCoordinate=b.dataPosition=null;var s=!1;if(t&&V)U=!0;else{U&&(z=!0),U=!1;for(var l=0;l<i;++l){var c=C[l].query(r,F[1]-n-1,N.pickRadius);if(c){if(c.distance>b.distance)continue;for(var u=0;u<a;++u){var f=E[u];if(S[u]===l){var h=f.pick(c);h&&(b.buttons=t,b.screen=c.coord,b.distance=c.distance,b.object=f,b.index=h.distance,b.dataPosition=h.position,b.dataCoordinate=h.dataCoordinate,b.data=h,s=!0)}}}}}o&&o!==b.object&&(o.highlight&&o.highlight(null),P=!0),b.object&&(b.object.highlight&&b.object.highlight(b.data),P=!0),(s=s||b.object!==o)&&N.onselect&&N.onselect(b),1&t&&!(1&V)&&N.onclick&&N.onclick(b),V=t}}),r.addEventListener("webglcontextlost",q);var H=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],G=[H[0].slice(),H[1].slice()];function Y(){if(!q()){j();var t=N.camera.tick();I.view=N.camera.matrix,P=P||t,z=z||t,k.pixelRatio=N.pixelRatio,T.pixelRatio=N.pixelRatio;var e=E.length,r=H[0],n=H[1];r[0]=r[1]=r[2]=1/0,n[0]=n[1]=n[2]=-1/0;for(var i=0;i<e;++i){var o=E[i];o.pixelRatio=N.pixelRatio,o.axes=N.axes,P=P||!!o.dirty,z=z||!!o.dirty;var s=o.bounds;if(s)for(var l=s[0],u=s[1],h=0;h<3;++h)r[h]=Math.min(r[h],l[h]),n[h]=Math.max(n[h],u[h])}var d=N.bounds;if(N.autoBounds)for(var h=0;h<3;++h){if(n[h]<r[h])r[h]=-1,n[h]=1;else{r[h]===n[h]&&(r[h]-=1,n[h]+=1);var m=.05*(n[h]-r[h]);r[h]=r[h]-m,n[h]=n[h]+m}d[0][h]=r[h],d[1][h]=n[h]}for(var v=!1,h=0;h<3;++h)v=v||G[0][h]!==d[0][h]||G[1][h]!==d[1][h],G[0][h]=d[0][h],G[1][h]=d[1][h];if(z=z||v,P=P||v){if(v){for(var y=[0,0,0],i=0;i<3;++i)y[i]=p((d[1][i]-d[0][i])/10);k.autoTicks?k.update({bounds:d,tickSpacing:y}):k.update({bounds:d})}var w=g.drawingBufferWidth,M=g.drawingBufferHeight;R[0]=w,R[1]=M,F[0]=0|Math.max(w/N.pixelRatio,1),F[1]=0|Math.max(M/N.pixelRatio,1),f(O,N.fovy,w/M,N.zNear,N.zFar);for(var i=0;i<16;++i)D[i]=0;D[15]=1;for(var A=0,i=0;i<3;++i)A=Math.max(A,d[1][i]-d[0][i]);for(var i=0;i<3;++i)N.autoScale?D[5*i]=N.aspect[i]/(d[1][i]-d[0][i]):D[5*i]=1/A,N.autoCenter&&(D[12+i]=.5*-D[5*i]*(d[0][i]+d[1][i]));for(var i=0;i<e;++i){var o=E[i];o.axesBounds=d,N.clipToBounds&&(o.clipBounds=d)}b.object&&(N.snapToData?T.position=b.dataCoordinate:T.position=b.dataPosition,T.bounds=d),z&&(z=!1,function(){if(q())return;g.colorMask(!0,!0,!0,!0),g.depthMask(!0),g.disable(g.BLEND),g.enable(g.DEPTH_TEST);for(var t=E.length,e=C.length,r=0;r<e;++r){var n=C[r];n.shape=F,n.begin();for(var i=0;i<t;++i)if(S[i]===r){var a=E[i];a.drawPick&&(a.pixelRatio=1,a.drawPick(I))}n.end()}}()),N.axesPixels=a(N.axes,I,w,M),N.onrender&&N.onrender(),g.bindFramebuffer(g.FRAMEBUFFER,null),g.viewport(0,0,w,M);var L=N.clearColor;g.clearColor(L[0],L[1],L[2],L[3]),g.clear(g.COLOR_BUFFER_BIT|g.DEPTH_BUFFER_BIT),g.depthMask(!0),g.colorMask(!0,!0,!0,!0),g.enable(g.DEPTH_TEST),g.depthFunc(g.LEQUAL),g.disable(g.BLEND),g.disable(g.CULL_FACE);var B=!1;k.enable&&(B=B||k.isTransparent(),k.draw(I)),T.axes=k,b.object&&T.draw(I),g.disable(g.CULL_FACE);for(var i=0;i<e;++i){var o=E[i];o.axes=k,o.pixelRatio=N.pixelRatio,o.isOpaque&&o.isOpaque()&&o.draw(I),o.isTransparent&&o.isTransparent()&&(B=!0)}if(B){x.shape=R,x.bind(),g.clear(g.DEPTH_BUFFER_BIT),g.colorMask(!1,!1,!1,!1),g.depthMask(!0),g.depthFunc(g.LESS),k.enable&&k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isOpaque&&o.isOpaque()&&o.draw(I)}g.enable(g.BLEND),g.blendEquation(g.FUNC_ADD),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.colorMask(!0,!0,!0,!0),g.depthMask(!1),g.clearColor(0,0,0,0),g.clear(g.COLOR_BUFFER_BIT),k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isTransparent&&o.isTransparent()&&o.drawTransparent(I)}g.bindFramebuffer(g.FRAMEBUFFER,null),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.disable(g.DEPTH_TEST),_.bind(),x.color[0].bind(0),_.uniforms.accumBuffer=0,c(g),g.disable(g.BLEND)}P=!1;for(var i=0;i<e;++i)E[i].dirty=!1}}}return function t(){e||N.contextLost||(requestAnimationFrame(t),Y())}(),N.redraw=function(){e||(P=!0,Y())},N};var n=t("3d-view-controls"),i=t("gl-axes3d"),a=t("gl-axes3d/properties"),o=t("gl-spikes3d"),s=t("gl-select-static"),l=t("gl-fbo"),c=t("a-big-triangle"),u=t("mouse-change"),f=t("gl-mat4/perspective"),h=t("./lib/shader"),d=t("is-mobile")();function p(t){var e=Math.round(Math.log(Math.abs(t))/Math.log(10));if(e<0){var r=Math.round(Math.pow(10,-e));return Math.ceil(t*r)/r}if(e>0){r=Math.round(Math.pow(10,e));return Math.ceil(t/r)*r}return Math.ceil(t)}function m(t){return"boolean"!=typeof t||t}},{"./lib/shader":209,"3d-view-controls":39,"a-big-triangle":42,"gl-axes3d":157,"gl-axes3d/properties":164,"gl-fbo":171,"gl-mat4/perspective":189,"gl-select-static":219,"gl-spikes3d":229,"is-mobile":265,"mouse-change":424}],211:[function(t,e,r){var n=t("glslify");r.pointVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform float pointCloud;\n\nhighp float rand(vec2 co) {\n  highp float a = 12.9898;\n  highp float b = 78.233;\n  highp float c = 43758.5453;\n  highp float d = dot(co.xy, vec2(a, b));\n  highp float e = mod(d, 3.14);\n  return fract(sin(e) * c);\n}\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n    // if we don't jitter the point size a bit, overall point cloud\n    // saturation 'jumps' on zooming, which is disturbing and confusing\n  gl_PointSize = pointSize * ((19.5 + rand(position)) / 20.0);\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    // get the same square surface as circle would be\n    gl_PointSize *= 0.886;\n  }\n}"]),r.pointFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 color, borderColor;\nuniform float centerFraction;\nuniform float pointCloud;\n\nvoid main() {\n  float radius;\n  vec4 baseColor;\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    if(centerFraction == 1.0) {\n      gl_FragColor = color;\n    } else {\n      gl_FragColor = mix(borderColor, color, centerFraction);\n    }\n  } else {\n    radius = length(2.0 * gl_PointCoord.xy - 1.0);\n    if(radius > 1.0) {\n      discard;\n    }\n    baseColor = mix(borderColor, color, step(radius, centerFraction));\n    gl_FragColor = vec4(baseColor.rgb * baseColor.a, baseColor.a);\n  }\n}\n"]),r.pickVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform vec4 pickOffset;\n\nvarying vec4 fragId;\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n  gl_PointSize = pointSize;\n\n  vec4 id = pickId + pickOffset;\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  fragId = id;\n}\n"]),r.pickFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\n\nvoid main() {\n  float radius = length(2.0 * gl_PointCoord.xy - 1.0);\n  if(radius > 1.0) {\n    discard;\n  }\n  gl_FragColor = fragId / 255.0;\n}\n"])},{glslify:253}],212:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("typedarray-pool"),o=t("./lib/shader");function s(t,e,r,n,i){this.plot=t,this.offsetBuffer=e,this.pickBuffer=r,this.shader=n,this.pickShader=i,this.sizeMin=.5,this.sizeMinCap=2,this.sizeMax=20,this.areaRatio=1,this.pointCount=0,this.color=[1,0,0,1],this.borderColor=[0,0,0,1],this.blend=!1,this.pickOffset=0,this.points=null}e.exports=function(t,e){var r=t.gl,a=i(r),l=i(r),c=n(r,o.pointVertex,o.pointFragment),u=n(r,o.pickVertex,o.pickFragment),f=new s(t,a,l,c,u);return f.update(e),t.addObject(f),f};var l,c,u=s.prototype;u.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.offsetBuffer.dispose(),this.pickBuffer.dispose(),this.plot.removeObject(this)},u.update=function(t){var e;function r(e,r){return e in t?t[e]:r}t=t||{},this.sizeMin=r("sizeMin",.5),this.sizeMax=r("sizeMax",20),this.color=r("color",[1,0,0,1]).slice(),this.areaRatio=r("areaRatio",1),this.borderColor=r("borderColor",[0,0,0,1]).slice(),this.blend=r("blend",!1);var n=t.positions.length>>>1,i=t.positions instanceof Float32Array,o=t.idToIndex instanceof Int32Array&&t.idToIndex.length>=n,s=t.positions,l=i?s:a.mallocFloat32(s.length),c=o?t.idToIndex:a.mallocInt32(n);if(i||l.set(s),!o)for(l.set(s),e=0;e<n;e++)c[e]=e;this.points=s,this.offsetBuffer.update(l),this.pickBuffer.update(c),i||a.free(l),o||a.free(c),this.pointCount=n,this.pickOffset=0},u.unifiedDraw=(l=[1,0,0,0,1,0,0,0,1],c=[0,0,0,0],function(t){var e=void 0!==t,r=e?this.pickShader:this.shader,n=this.plot.gl,i=this.plot.dataBox;if(0===this.pointCount)return t;var a=i[2]-i[0],o=i[3]-i[1],s=function(t,e){var r,n=0,i=t.length>>>1;for(r=0;r<i;r++){var a=t[2*r],o=t[2*r+1];a>=e[0]&&a<=e[2]&&o>=e[1]&&o<=e[3]&&n++}return n}(this.points,i),u=this.plot.pickPixelRatio*Math.max(Math.min(this.sizeMinCap,this.sizeMin),Math.min(this.sizeMax,this.sizeMax/Math.pow(s,.33333)));l[0]=2/a,l[4]=2/o,l[6]=-2*i[0]/a-1,l[7]=-2*i[1]/o-1,this.offsetBuffer.bind(),r.bind(),r.attributes.position.pointer(),r.uniforms.matrix=l,r.uniforms.color=this.color,r.uniforms.borderColor=this.borderColor,r.uniforms.pointCloud=u<5,r.uniforms.pointSize=u,r.uniforms.centerFraction=Math.min(1,Math.max(0,Math.sqrt(1-this.areaRatio))),e&&(c[0]=255&t,c[1]=t>>8&255,c[2]=t>>16&255,c[3]=t>>24&255,this.pickBuffer.bind(),r.attributes.pickId.pointer(n.UNSIGNED_BYTE),r.uniforms.pickOffset=c,this.pickOffset=t);var f=n.getParameter(n.BLEND),h=n.getParameter(n.DITHER);return f&&!this.blend&&n.disable(n.BLEND),h&&n.disable(n.DITHER),n.drawArrays(n.POINTS,0,this.pointCount),f&&!this.blend&&n.enable(n.BLEND),h&&n.enable(n.DITHER),t+this.pointCount}),u.draw=u.unifiedDraw,u.drawPick=u.unifiedDraw,u.pick=function(t,e,r){var n=this.pickOffset,i=this.pointCount;if(r<n||r>=n+i)return null;var a=r-n,o=this.points;return{object:this,pointId:a,dataCoord:[o[2*a],o[2*a+1]]}}},{"./lib/shader":211,"gl-buffer":165,"gl-shader":220,"typedarray-pool":534}],213:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c=e[0],u=e[1],f=e[2],h=e[3],d=r[0],p=r[1],m=r[2],v=r[3];(a=c*d+u*p+f*m+h*v)<0&&(a=-a,d=-d,p=-p,m=-m,v=-v);1-a>1e-6?(i=Math.acos(a),o=Math.sin(i),s=Math.sin((1-n)*i)/o,l=Math.sin(n*i)/o):(s=1-n,l=n);return t[0]=s*c+l*d,t[1]=s*u+l*p,t[2]=s*f+l*m,t[3]=s*h+l*v,t}},{}],214:[function(t,e,r){"use strict";var n=t("vectorize-text");e.exports=function(t,e){var r=i[e];r||(r=i[e]={});if(t in r)return r[t];for(var a=n(t,{textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),o=n(t,{triangles:!0,textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),s=[[1/0,1/0],[-1/0,-1/0]],l=0;l<a.positions.length;++l)for(var c=a.positions[l],u=0;u<2;++u)s[0][u]=Math.min(s[0][u],c[u]),s[1][u]=Math.max(s[1][u],c[u]);return r[t]=[o,a,s]};var i={}},{"vectorize-text":548}],215:[function(t,e,r){var n=t("gl-shader"),i=t("glslify"),a=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform vec4 highlightId;\nuniform float highlightScale;\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   || \n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = 1.0;\n    if(distance(highlightId, id) < 0.0001) {\n      scale = highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1);\n    vec4 viewPosition = view * worldPosition;\n    viewPosition = viewPosition / viewPosition.w;\n    vec4 clipPosition = projection * (viewPosition + scale * vec4(glyph.x, -glyph.y, 0, 0));\n    \n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),o=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float highlightScale, pixelRatio;\nuniform vec4 highlightId;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = pixelRatio;\n    if(distance(highlightId.bgr, id.bgr) < 0.001) {\n      scale *= highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1.0);\n    vec4 viewPosition = view * worldPosition;\n    vec4 clipPosition = projection * viewPosition;\n    clipPosition /= clipPosition.w;\n    \n    gl_Position = clipPosition + vec4(screenSize * scale * vec2(glyph.x, -glyph.y), 0.0, 0.0);\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),s=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform float highlightScale;\nuniform vec4 highlightId;\nuniform vec3 axes[2];\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float scale, pixelRatio;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   ||\n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float lscale = pixelRatio * scale;\n    if(distance(highlightId, id) < 0.0001) {\n      lscale *= highlightScale;\n    }\n\n    vec4 clipCenter   = projection * view * model * vec4(position, 1);\n    vec3 dataPosition = position + 0.5*lscale*(axes[0] * glyph.x + axes[1] * glyph.y) * clipCenter.w * screenSize.y;\n    vec4 clipPosition = projection * view * model * vec4(dataPosition, 1);\n\n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = dataPosition;\n  }\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float opacity;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   ||\n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = interpColor * opacity;\n  }\n}\n"]),c=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float pickGroup;\n\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   || \n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = vec4(pickGroup, pickId.bgr);\n  }\n}"]),u=[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"glyph",type:"vec2"},{name:"id",type:"vec4"}],f={vertex:a,fragment:l,attributes:u},h={vertex:o,fragment:l,attributes:u},d={vertex:s,fragment:l,attributes:u},p={vertex:a,fragment:c,attributes:u},m={vertex:o,fragment:c,attributes:u},v={vertex:s,fragment:c,attributes:u};function g(t,e){var r=n(t,e),i=r.attributes;return i.position.location=0,i.color.location=1,i.glyph.location=2,i.id.location=3,r}r.createPerspective=function(t){return g(t,f)},r.createOrtho=function(t){return g(t,h)},r.createProject=function(t){return g(t,d)},r.createPickPerspective=function(t){return g(t,p)},r.createPickOrtho=function(t){return g(t,m)},r.createPickProject=function(t){return g(t,v)}},{"gl-shader":220,glslify:253}],216:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("typedarray-pool"),o=t("gl-mat4/multiply"),s=t("./lib/shaders"),l=t("./lib/glyphs"),c=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function u(t,e){var r=t[0],n=t[1],i=t[2],a=t[3];return t[0]=e[0]*r+e[4]*n+e[8]*i+e[12]*a,t[1]=e[1]*r+e[5]*n+e[9]*i+e[13]*a,t[2]=e[2]*r+e[6]*n+e[10]*i+e[14]*a,t[3]=e[3]*r+e[7]*n+e[11]*i+e[15]*a,t}function f(t,e,r,n){return u(n,n),u(n,n),u(n,n)}function h(t,e,r,n,i,a,o,s,l,c,u,f){this.gl=t,this.pixelRatio=1,this.shader=e,this.orthoShader=r,this.projectShader=n,this.pointBuffer=i,this.colorBuffer=a,this.glyphBuffer=o,this.idBuffer=s,this.vao=l,this.vertexCount=0,this.lineVertexCount=0,this.opacity=1,this.lineWidth=0,this.projectScale=[2/3,2/3,2/3],this.projectOpacity=[1,1,1],this.pickId=0,this.pickPerspectiveShader=c,this.pickOrthoShader=u,this.pickProjectShader=f,this.points=[],this._selectResult=new function(t,e){this.index=t,this.dataCoordinate=this.position=e}(0,[0,0,0]),this.useOrtho=!0,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.axesProject=[!0,!0,!0],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.highlightId=[1,1,1,1],this.highlightScale=2,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.dirty=!0}e.exports=function(t){var e=t.gl,r=s.createPerspective(e),a=s.createOrtho(e),o=s.createProject(e),l=s.createPickPerspective(e),c=s.createPickOrtho(e),u=s.createPickProject(e),f=n(e),d=n(e),p=n(e),m=n(e),v=i(e,[{buffer:f,size:3,type:e.FLOAT},{buffer:d,size:4,type:e.FLOAT},{buffer:p,size:2,type:e.FLOAT},{buffer:m,size:4,type:e.UNSIGNED_BYTE,normalized:!0}]),g=new h(e,r,a,o,f,d,p,m,v,l,c,u);return g.update(t),g};var d=h.prototype;d.pickSlots=1,d.setPickBase=function(t){this.pickId=t},d.isTransparent=function(){if(this.opacity<1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]<1)return!0;return!1},d.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]>=1)return!0;return!1};var p=[0,0],m=[0,0,0],v=[0,0,0],g=[0,0,0,1],y=[0,0,0,1],b=c.slice(),x=[0,0,0],_=[[0,0,0],[0,0,0]];function w(t){return t[0]=t[1]=t[2]=0,t}function M(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=1,t}function k(t,e,r,n){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[r]=n,t}function A(t,e,r,n,i){var a,s=e.axesProject,l=e.gl,u=t.uniforms,h=r.model||c,d=r.view||c,A=r.projection||c,T=e.axesBounds,E=function(t){for(var e=_,r=0;r<2;++r)for(var n=0;n<3;++n)e[r][n]=Math.max(Math.min(t[r][n],1e8),-1e8);return e}(e.clipBounds);a=e.axes&&e.axes.lastCubeProps?e.axes.lastCubeProps.axis:[1,1,1],p[0]=2/l.drawingBufferWidth,p[1]=2/l.drawingBufferHeight,t.bind(),u.view=d,u.projection=A,u.screenSize=p,u.highlightId=e.highlightId,u.highlightScale=e.highlightScale,u.clipBounds=E,u.pickGroup=e.pickId/255,u.pixelRatio=e.pixelRatio;for(var S=0;S<3;++S)if(s[S]&&e.projectOpacity[S]<1===n){u.scale=e.projectScale[S],u.opacity=e.projectOpacity[S];for(var L=b,C=0;C<16;++C)L[C]=0;for(C=0;C<4;++C)L[5*C]=1;L[5*S]=0,a[S]<0?L[12+S]=T[0][S]:L[12+S]=T[1][S],o(L,h,L),u.model=L;var P=(S+1)%3,z=(S+2)%3,O=w(m),D=w(v);O[P]=1,D[z]=1;var I=f(0,0,0,M(g,O)),R=f(0,0,0,M(y,D));if(Math.abs(I[1])>Math.abs(R[1])){var N=I;I=R,R=N,N=O,O=D,D=N;var F=P;P=z,z=F}I[0]<0&&(O[P]=-1),R[1]>0&&(D[z]=-1);var j=0,B=0;for(C=0;C<4;++C)j+=Math.pow(h[4*P+C],2),B+=Math.pow(h[4*z+C],2);O[P]/=Math.sqrt(j),D[z]/=Math.sqrt(B),u.axes[0]=O,u.axes[1]=D,u.fragClipBounds[0]=k(x,E[0],S,-1e8),u.fragClipBounds[1]=k(x,E[1],S,1e8),e.vao.draw(l.TRIANGLES,e.vertexCount),e.lineWidth>0&&(l.lineWidth(e.lineWidth),e.vao.draw(l.LINES,e.lineVertexCount,e.vertexCount))}}var T=[[-1e8,-1e8,-1e8],[1e8,1e8,1e8]];function E(t,e,r,n,i,a){var o=r.gl;if(r.vao.bind(),i===r.opacity<1||a){t.bind();var s=t.uniforms;s.model=n.model||c,s.view=n.view||c,s.projection=n.projection||c,p[0]=2/o.drawingBufferWidth,p[1]=2/o.drawingBufferHeight,s.screenSize=p,s.highlightId=r.highlightId,s.highlightScale=r.highlightScale,s.fragClipBounds=T,s.clipBounds=r.axes.bounds,s.opacity=r.opacity,s.pickGroup=r.pickId/255,s.pixelRatio=r.pixelRatio,r.vao.draw(o.TRIANGLES,r.vertexCount),r.lineWidth>0&&(o.lineWidth(r.lineWidth),r.vao.draw(o.LINES,r.lineVertexCount,r.vertexCount))}A(e,r,n,i),r.vao.unbind()}d.draw=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!1,!1)},d.drawTransparent=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!0,!1)},d.drawPick=function(t){E(this.useOrtho?this.pickOrthoShader:this.pickPerspectiveShader,this.pickProjectShader,this,t,!1,!0)},d.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=t.value[2]+(t.value[1]<<8)+(t.value[0]<<16);if(e>=this.pointCount||e<0)return null;var r=this.points[e],n=this._selectResult;n.index=e;for(var i=0;i<3;++i)n.position[i]=n.dataCoordinate[i]=r[i];return n},d.highlight=function(t){if(t){var e=t.index,r=255&e,n=e>>8&255,i=e>>16&255;this.highlightId=[r/255,n/255,i/255,0]}else this.highlightId=[1,1,1,1]},d.update=function(t){if("perspective"in(t=t||{})&&(this.useOrtho=!t.perspective),"orthographic"in t&&(this.useOrtho=!!t.orthographic),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"project"in t)if(Array.isArray(t.project))this.axesProject=t.project;else{var e=!!t.project;this.axesProject=[e,e,e]}if("projectScale"in t)if(Array.isArray(t.projectScale))this.projectScale=t.projectScale.slice();else{var r=+t.projectScale;this.projectScale=[r,r,r]}if("projectOpacity"in t)if(Array.isArray(t.projectOpacity))this.projectOpacity=t.projectOpacity.slice();else{r=+t.projectOpacity;this.projectOpacity=[r,r,r]}"opacity"in t&&(this.opacity=t.opacity),this.dirty=!0;var n=t.position;if(n){var i=t.font||"normal",o=t.alignment||[0,0],s=[1/0,1/0,1/0],c=[-1/0,-1/0,-1/0],u=t.glyph,f=t.color,h=t.size,d=t.angle,p=t.lineColor,m=0,v=0,g=0,y=n.length;t:for(var b=0;b<y;++b){for(var x=n[b],_=0;_<3;++_)if(isNaN(x[_])||!isFinite(x[_]))continue t;var w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];v+=3*w.cells.length,g+=2*M.edges.length}var A=v+g,T=a.mallocFloat(3*A),E=a.mallocFloat(4*A),S=a.mallocFloat(2*A),L=a.mallocUint32(A),C=[0,o[1]],P=0,z=v,O=[0,0,0,1],D=[0,0,0,1],I=Array.isArray(f)&&Array.isArray(f[0]),R=Array.isArray(p)&&Array.isArray(p[0]);t:for(b=0;b<y;++b){var N;for(x=n[b],_=0;_<3;++_){if(isNaN(x[_])||!isFinite(x[_])){m+=1;continue t}c[_]=Math.max(c[_],x[_]),s[_]=Math.min(s[_],x[_])}var F;w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];if(Array.isArray(f)){if(3===(F=I?f[b]:f).length){for(_=0;_<3;++_)O[_]=F[_];O[3]=1}else if(4===F.length)for(_=0;_<4;++_)O[_]=F[_]}else 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l=s[0]+(n[0]-o[0])/(o[2]-o[0])*(s[2]-s[0]),c=s[1]+(n[1]-o[1])/(o[3]-o[1])*(s[3]-s[1]);t[0]&&a.drawLine(l,c,s[0],c,e[0],r[0]),t[1]&&a.drawLine(l,c,l,s[1],e[1],r[1]),t[2]&&a.drawLine(l,c,s[2],c,e[2],r[2]),t[3]&&a.drawLine(l,c,l,s[3],e[3],r[3])}},i.dispose=function(){this.plot.removeOverlay(this)}},{}],228:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, color;\nattribute float weight;\n\nuniform mat4 model, view, projection;\nuniform vec3 coordinates[3];\nuniform vec4 colors[3];\nuniform vec2 screenShape;\nuniform float lineWidth;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vertexPosition = mix(coordinates[0],\n    mix(coordinates[2], coordinates[1], 0.5 * (position + 1.0)), abs(position));\n\n  vec4 clipPos = projection * view * model * vec4(vertexPosition, 1.0);\n  vec2 clipOffset = (projection * view * model * vec4(color, 0.0)).xy;\n  vec2 delta = weight * clipOffset * screenShape;\n  vec2 lineOffset = normalize(vec2(delta.y, -delta.x)) / screenShape;\n\n  gl_Position   = vec4(clipPos.xy + clipPos.w * 0.5 * lineWidth * lineOffset, clipPos.z, clipPos.w);\n  fragColor     = color.x * colors[0] + color.y * colors[1] + color.z * colors[2];\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragColor;\n\nvoid main() {\n  gl_FragColor = fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec3"},{name:"weight",type:"float"}])}},{"gl-shader":220,glslify:253}],229:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders/index");e.exports=function(t,e){var r=[];function o(t,e,n,i,a,o){var 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vec3 lowerBound, upperBound;\nuniform float contourTint;\nuniform vec4 contourColor;\nuniform sampler2D colormap;\nuniform vec3 clipBounds[2];\nuniform float roughness, fresnel, kambient, kdiffuse, kspecular, opacity;\nuniform float vertexColor;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec3 lightDirection, eyeDirection, surfaceNormal;\nvarying vec4 vColor;\n\nvoid main() {\n  if (kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(surfaceNormal);\n  vec3 V = normalize(eyeDirection);\n  vec3 L = normalize(lightDirection);\n\n  if(gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = max(beckmannSpecular(L, V, N, roughness), 0.);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  //decide how to interpolate color \u2014 in vertex or in fragment\n  vec4 surfaceColor = step(vertexColor, .5) * texture2D(colormap, 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planeCoordinate = uv.zw;\n\n  vColor = texture2D(colormap, vec2(value, value));\n\n  //Don't do lighting for contours\n  surfaceNormal   = vec3(1,0,0);\n  eyeDirection    = vec3(0,1,0);\n  lightDirection  = vec3(0,0,1);\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec2 shape;\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec2 planeCoordinate;\nvarying vec3 surfaceNormal;\n\nvec2 splitFloat(float v) {\n  float vh = 255.0 * v;\n  float upper = floor(vh);\n  float lower = fract(vh);\n  return vec2(upper / 255.0, floor(lower * 16.0) / 16.0);\n}\n\nvoid main() {\n  if(kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n  vec2 ux = splitFloat(planeCoordinate.x / shape.x);\n  vec2 uy = splitFloat(planeCoordinate.y / shape.y);\n  gl_FragColor = vec4(pickId, ux.x, uy.x, ux.y + 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n=t("bit-twiddle"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("typedarray-pool"),l=t("colormap"),c=t("ndarray-ops"),u=t("ndarray-pack"),f=t("ndarray"),h=t("surface-nets"),d=t("gl-mat4/multiply"),p=t("gl-mat4/invert"),m=t("binary-search-bounds"),v=t("ndarray-gradient"),g=t("./lib/shaders"),y=g.createShader,b=g.createContourShader,x=g.createPickShader,_=g.createPickContourShader,w=40,M=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1],k=[[0,0],[0,1],[1,0],[1,1],[1,0],[0,1]],A=[[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0]];!function(){for(var t=0;t<3;++t){var e=A[t],r=(t+2)%3;e[(t+1)%3+0]=1,e[r+3]=1,e[t+6]=1}}();var T=256;function E(t,e,r,n,i,a,o,l,c,u,h,d,p,m){this.gl=t,this.shape=e,this.bounds=r,this.intensityBounds=[],this._shader=n,this._pickShader=i,this._coordinateBuffer=a,this._vao=o,this._colorMap=l,this._contourShader=c,this._contourPickShader=u,this._contourBuffer=h,this._contourVAO=d,this._contourOffsets=[[],[],[]],this._contourCounts=[[],[],[]],this._vertexCount=0,this._pickResult=new function(t,e,r,n,i){this.position=t,this.index=e,this.uv=r,this.level=n,this.dataCoordinate=i}([0,0,0],[0,0],[0,0],[0,0,0],[0,0,0]),this._dynamicBuffer=p,this._dynamicVAO=m,this._dynamicOffsets=[0,0,0],this._dynamicCounts=[0,0,0],this.contourWidth=[1,1,1],this.contourLevels=[[1],[1],[1]],this.contourTint=[0,0,0],this.contourColor=[[.5,.5,.5,1],[.5,.5,.5,1],[.5,.5,.5,1]],this.showContour=!0,this.showSurface=!0,this.enableHighlight=[!0,!0,!0],this.highlightColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.highlightTint=[1,1,1],this.highlightLevel=[-1,-1,-1],this.enableDynamic=[!0,!0,!0],this.dynamicLevel=[NaN,NaN,NaN],this.dynamicColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.dynamicTint=[1,1,1],this.dynamicWidth=[1,1,1],this.axesBounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.surfaceProject=[!1,!1,!1],this.contourProject=[[!1,!1,!1],[!1,!1,!1],[!1,!1,!1]],this.colorBounds=[!1,!1],this._field=[f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0])],this.pickId=1,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.snapToData=!1,this.opacity=1,this.lightPosition=[10,1e4,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.vertexColor=0,this.dirty=!0}var S=E.prototype;S.isTransparent=function(){return this.opacity<1},S.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this._contourCounts[t].length>0||this._dynamicCounts[t]>0)return!0;return!1},S.pickSlots=1,S.setPickBase=function(t){this.pickId=t};var L=[0,0,0],C={showSurface:!1,showContour:!1,projections:[M.slice(),M.slice(),M.slice()],clipBounds:[[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]]]};function P(t,e){var r,n,i,a=e.axes&&e.axes.lastCubeProps.axis||L,o=e.showSurface,s=e.showContour;for(r=0;r<3;++r)for(o=o||e.surfaceProject[r],n=0;n<3;++n)s=s||e.contourProject[r][n];for(r=0;r<3;++r){var l=C.projections[r];for(n=0;n<16;++n)l[n]=0;for(n=0;n<4;++n)l[5*n]=1;l[5*r]=0,l[12+r]=e.axesBounds[+(a[r]>0)][r],d(l,t.model,l);var c=C.clipBounds[r];for(i=0;i<2;++i)for(n=0;n<3;++n)c[i][n]=t.clipBounds[i][n];c[0][r]=-1e8,c[1][r]=1e8}return C.showSurface=o,C.showContour=s,C}var z={model:M,view:M,projection:M,inverseModel:M.slice(),lowerBound:[0,0,0],upperBound:[0,0,0],colorMap:0,clipBounds:[[0,0,0],[0,0,0]],height:0,contourTint:0,contourColor:[0,0,0,1],permutation:[1,0,0,0,1,0,0,0,1],zOffset:-1e-4,kambient:1,kdiffuse:1,kspecular:1,lightPosition:[1e3,1e3,1e3],eyePosition:[0,0,0],roughness:1,fresnel:1,opacity:1,vertexColor:0},O=M.slice(),D=[1,0,0,0,1,0,0,0,1];function I(t,e){t=t||{};var r=this.gl;r.disable(r.CULL_FACE),this._colorMap.bind(0);var n=z;n.model=t.model||M,n.view=t.view||M,n.projection=t.projection||M,n.lowerBound=[this.bounds[0][0],this.bounds[0][1],this.colorBounds[0]||this.bounds[0][2]],n.upperBound=[this.bounds[1][0],this.bounds[1][1],this.colorBounds[1]||this.bounds[1][2]],n.contourColor=this.contourColor[0],n.inverseModel=p(n.inverseModel,n.model);for(var i=0;i<2;++i)for(var a=n.clipBounds[i],o=0;o<3;++o)a[o]=Math.min(Math.max(this.clipBounds[i][o],-1e8),1e8);n.kambient=this.ambientLight,n.kdiffuse=this.diffuseLight,n.kspecular=this.specularLight,n.roughness=this.roughness,n.fresnel=this.fresnel,n.opacity=this.opacity,n.height=0,n.permutation=D,n.vertexColor=this.vertexColor;var s=O;for(d(s,n.view,n.model),d(s,n.projection,s),p(s,s),i=0;i<3;++i)n.eyePosition[i]=s[12+i]/s[15];var l=s[15];for(i=0;i<3;++i)l+=this.lightPosition[i]*s[4*i+3];for(i=0;i<3;++i){var c=s[12+i];for(o=0;o<3;++o)c+=s[4*o+i]*this.lightPosition[o];n.lightPosition[i]=c/l}var u=P(n,this);if(u.showSurface&&e===this.opacity<1){for(this._shader.bind(),this._shader.uniforms=n,this._vao.bind(),this.showSurface&&this._vertexCount&&this._vao.draw(r.TRIANGLES,this._vertexCount),i=0;i<3;++i)this.surfaceProject[i]&&this.vertexCount&&(this._shader.uniforms.model=u.projections[i],this._shader.uniforms.clipBounds=u.clipBounds[i],this._vao.draw(r.TRIANGLES,this._vertexCount));this._vao.unbind()}if(u.showContour&&!e){var f=this._contourShader;n.kambient=1,n.kdiffuse=0,n.kspecular=0,n.opacity=1,f.bind(),f.uniforms=n;var h=this._contourVAO;for(h.bind(),i=0;i<3;++i)for(f.uniforms.permutation=A[i],r.lineWidth(this.contourWidth[i]),o=0;o<this.contourLevels[i].length;++o)this._contourCounts[i][o]&&(o===this.highlightLevel[i]?(f.uniforms.contourColor=this.highlightColor[i],f.uniforms.contourTint=this.highlightTint[i]):0!==o&&o-1!==this.highlightLevel[i]||(f.uniforms.contourColor=this.contourColor[i],f.uniforms.contourTint=this.contourTint[i]),f.uniforms.height=this.contourLevels[i][o],h.draw(r.LINES,this._contourCounts[i][o],this._contourOffsets[i][o]));for(i=0;i<3;++i)for(f.uniforms.model=u.projections[i],f.uniforms.clipBounds=u.clipBounds[i],o=0;o<3;++o)if(this.contourProject[i][o]){f.uniforms.permutation=A[o],r.lineWidth(this.contourWidth[o]);for(var m=0;m<this.contourLevels[o].length;++m)m===this.highlightLevel[o]?(f.uniforms.contourColor=this.highlightColor[o],f.uniforms.contourTint=this.highlightTint[o]):0!==m&&m-1!==this.highlightLevel[o]||(f.uniforms.contourColor=this.contourColor[o],f.uniforms.contourTint=this.contourTint[o]),f.uniforms.height=this.contourLevels[o][m],h.draw(r.LINES,this._contourCounts[o][m],this._contourOffsets[o][m])}for(h.unbind(),(h=this._dynamicVAO).bind(),i=0;i<3;++i)if(0!==this._dynamicCounts[i])for(f.uniforms.model=n.model,f.uniforms.clipBounds=n.clipBounds,f.uniforms.permutation=A[i],r.lineWidth(this.dynamicWidth[i]),f.uniforms.contourColor=this.dynamicColor[i],f.uniforms.contourTint=this.dynamicTint[i],f.uniforms.height=this.dynamicLevel[i],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]),o=0;o<3;++o)this.contourProject[o][i]&&(f.uniforms.model=u.projections[o],f.uniforms.clipBounds=u.clipBounds[o],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]));h.unbind()}}S.draw=function(t){return I.call(this,t,!1)},S.drawTransparent=function(t){return I.call(this,t,!0)};var R={model:M,view:M,projection:M,inverseModel:M,clipBounds:[[0,0,0],[0,0,0]],height:0,shape:[0,0],pickId:0,lowerBound:[0,0,0],upperBound:[0,0,0],zOffset:0,permutation:[1,0,0,0,1,0,0,0,1],lightPosition:[0,0,0],eyePosition:[0,0,0]};function N(t,e){var r=e.shape.slice(),n=t.shape.slice();c.assign(t.lo(1,1).hi(r[0],r[1]),e),c.assign(t.lo(1).hi(r[0],1),e.hi(r[0],1)),c.assign(t.lo(1,n[1]-1).hi(r[0],1),e.lo(0,r[1]-1).hi(r[0],1)),c.assign(t.lo(0,1).hi(1,r[1]),e.hi(1)),c.assign(t.lo(n[0]-1,1).hi(1,r[1]),e.lo(r[0]-1)),t.set(0,0,e.get(0,0)),t.set(0,n[1]-1,e.get(0,r[1]-1)),t.set(n[0]-1,0,e.get(r[0]-1,0)),t.set(n[0]-1,n[1]-1,e.get(r[0]-1,r[1]-1))}function F(t,e){return Array.isArray(t)?[e(t[0]),e(t[1]),e(t[2])]:[e(t),e(t),e(t)]}function j(t){return Array.isArray(t)?3===t.length?[t[0],t[1],t[2],1]:[t[0],t[1],t[2],t[3]]:[0,0,0,1]}function B(t){if(Array.isArray(t)){if(Array.isArray(t))return[j(t[0]),j(t[1]),j(t[2])];var e=j(t);return[e.slice(),e.slice(),e.slice()]}}S.drawPick=function(t){t=t||{};var e=this.gl;e.disable(e.CULL_FACE);var r=R;r.model=t.model||M,r.view=t.view||M,r.projection=t.projection||M,r.shape=this._field[2].shape,r.pickId=this.pickId/255,r.lowerBound=this.bounds[0],r.upperBound=this.bounds[1],r.permutation=D;for(var n=0;n<2;++n)for(var i=r.clipBounds[n],a=0;a<3;++a)i[a]=Math.min(Math.max(this.clipBounds[n][a],-1e8),1e8);var o=P(r,this);if(o.showSurface){for(this._pickShader.bind(),this._pickShader.uniforms=r,this._vao.bind(),this._vao.draw(e.TRIANGLES,this._vertexCount),n=0;n<3;++n)this.surfaceProject[n]&&(this._pickShader.uniforms.model=o.projections[n],this._pickShader.uniforms.clipBounds=o.clipBounds[n],this._vao.draw(e.TRIANGLES,this._vertexCount));this._vao.unbind()}if(o.showContour){var s=this._contourPickShader;s.bind(),s.uniforms=r;var l=this._contourVAO;for(l.bind(),a=0;a<3;++a)for(e.lineWidth(this.contourWidth[a]),s.uniforms.permutation=A[a],n=0;n<this.contourLevels[a].length;++n)this._contourCounts[a][n]&&(s.uniforms.height=this.contourLevels[a][n],l.draw(e.LINES,this._contourCounts[a][n],this._contourOffsets[a][n]));for(n=0;n<3;++n)for(s.uniforms.model=o.projections[n],s.uniforms.clipBounds=o.clipBounds[n],a=0;a<3;++a)if(this.contourProject[n][a]){s.uniforms.permutation=A[a],e.lineWidth(this.contourWidth[a]);for(var c=0;c<this.contourLevels[a].length;++c)this._contourCounts[a][c]&&(s.uniforms.height=this.contourLevels[a][c],l.draw(e.LINES,this._contourCounts[a][c],this._contourOffsets[a][c]))}l.unbind()}},S.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=this._field[2].shape,r=this._pickResult,n=e[0]*(t.value[0]+(t.value[2]>>4)/16)/255,i=Math.floor(n),a=n-i,o=e[1]*(t.value[1]+(15&t.value[2])/16)/255,s=Math.floor(o),l=o-s;i+=1,s+=1;var c=r.position;c[0]=c[1]=c[2]=0;for(var u=0;u<2;++u)for(var f=u?a:1-a,h=0;h<2;++h)for(var d=i+u,p=s+h,v=f*(h?l:1-l),g=0;g<3;++g)c[g]+=this._field[g].get(d,p)*v;for(var y=this._pickResult.level,b=0;b<3;++b)if(y[b]=m.le(this.contourLevels[b],c[b]),y[b]<0)this.contourLevels[b].length>0&&(y[b]=0);else if(y[b]<this.contourLevels[b].length-1){var x=this.contourLevels[b][y[b]],_=this.contourLevels[b][y[b]+1];Math.abs(x-c[b])>Math.abs(_-c[b])&&(y[b]+=1)}for(r.index[0]=a<.5?i:i+1,r.index[1]=l<.5?s:s+1,r.uv[0]=n/e[0],r.uv[1]=o/e[1],g=0;g<3;++g)r.dataCoordinate[g]=this._field[g].get(r.index[0],r.index[1]);return r},S.update=function(t){t=t||{},this.dirty=!0,"contourWidth"in t&&(this.contourWidth=F(t.contourWidth,Number)),"showContour"in t&&(this.showContour=F(t.showContour,Boolean)),"showSurface"in t&&(this.showSurface=!!t.showSurface),"contourTint"in t&&(this.contourTint=F(t.contourTint,Boolean)),"contourColor"in t&&(this.contourColor=B(t.contourColor)),"contourProject"in t&&(this.contourProject=F(t.contourProject,function(t){return F(t,Boolean)})),"surfaceProject"in t&&(this.surfaceProject=t.surfaceProject),"dynamicColor"in t&&(this.dynamicColor=B(t.dynamicColor)),"dynamicTint"in t&&(this.dynamicTint=F(t.dynamicTint,Number)),"dynamicWidth"in t&&(this.dynamicWidth=F(t.dynamicWidth,Number)),"opacity"in t&&(this.opacity=t.opacity),"colorBounds"in t&&(this.colorBounds=t.colorBounds),"vertexColor"in t&&(this.vertexColor=t.vertexColor?1:0);var e=t.field||t.coords&&t.coords[2]||null,r=!1;if(e||(e=this._field[2].shape[0]||this._field[2].shape[2]?this._field[2].lo(1,1).hi(this._field[2].shape[0]-2,this._field[2].shape[1]-2):this._field[2].hi(0,0)),"field"in t||"coords"in t){var i=(e.shape[0]+2)*(e.shape[1]+2);i>this._field[2].data.length&&(s.freeFloat(this._field[2].data),this._field[2].data=s.mallocFloat(n.nextPow2(i))),this._field[2]=f(this._field[2].data,[e.shape[0]+2,e.shape[1]+2]),N(this._field[2],e),this.shape=e.shape.slice();for(var a=this.shape,o=0;o<2;++o)this._field[2].size>this._field[o].data.length&&(s.freeFloat(this._field[o].data),this._field[o].data=s.mallocFloat(this._field[2].size)),this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2]);if(t.coords){var d=t.coords;if(!Array.isArray(d)||3!==d.length)throw new Error("gl-surface: invalid coordinates for x/y");for(o=0;o<2;++o){var p=d[o];for(x=0;x<2;++x)if(p.shape[x]!==a[x])throw new Error("gl-surface: coords have incorrect shape");N(this._field[o],p)}}else if(t.ticks){var m=t.ticks;if(!Array.isArray(m)||2!==m.length)throw new Error("gl-surface: invalid ticks");for(o=0;o<2;++o){var g=m[o];if((Array.isArray(g)||g.length)&&(g=f(g)),g.shape[0]!==a[o])throw new Error("gl-surface: invalid tick length");var y=f(g.data,a);y.stride[o]=g.stride[0],y.stride[1^o]=0,N(this._field[o],y)}}else{for(o=0;o<2;++o){var b=[0,0];b[o]=1,this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2],b,0)}this._field[0].set(0,0,0);for(var x=0;x<a[0];++x)this._field[0].set(x+1,0,x);for(this._field[0].set(a[0]+1,0,a[0]-1),this._field[1].set(0,0,0),x=0;x<a[1];++x)this._field[1].set(0,x+1,x);this._field[1].set(0,a[1]+1,a[1]-1)}var _=this._field,w=f(s.mallocFloat(3*_[2].size*2),[3,a[0]+2,a[1]+2,2]);for(o=0;o<3;++o)v(w.pick(o),_[o],"mirror");var M=f(s.mallocFloat(3*_[2].size),[a[0]+2,a[1]+2,3]);for(o=0;o<a[0]+2;++o)for(x=0;x<a[1]+2;++x){var A=w.get(0,o,x,0),E=w.get(0,o,x,1),S=w.get(1,o,x,0),L=w.get(1,o,x,1),C=w.get(2,o,x,0),P=w.get(2,o,x,1),z=S*P-L*C,O=C*E-P*A,D=A*L-E*S,I=Math.sqrt(z*z+O*O+D*D);I<1e-8?(I=Math.max(Math.abs(z),Math.abs(O),Math.abs(D)))<1e-8?(D=1,O=z=0,I=1):I=1/I:I=1/Math.sqrt(I),M.set(o,x,0,z*I),M.set(o,x,1,O*I),M.set(o,x,2,D*I)}s.free(w.data);var R=[1/0,1/0,1/0],j=[-1/0,-1/0,-1/0],U=1/0,V=-1/0,q=(a[0]-1)*(a[1]-1)*6,H=s.mallocFloat(n.nextPow2(10*q)),G=0,Y=0;for(o=0;o<a[0]-1;++o)t:for(x=0;x<a[1]-1;++x){for(var W=0;W<2;++W)for(var X=0;X<2;++X)for(var Z=0;Z<3;++Z){var J=this._field[Z].get(1+o+W,1+x+X);if(isNaN(J)||!isFinite(J))continue t}for(Z=0;Z<6;++Z){var K=o+k[Z][0],Q=x+k[Z][1],$=this._field[0].get(K+1,Q+1),tt=this._field[1].get(K+1,Q+1),et=J=this._field[2].get(K+1,Q+1);z=M.get(K+1,Q+1,0),O=M.get(K+1,Q+1,1),D=M.get(K+1,Q+1,2),t.intensity&&(et=t.intensity.get(K,Q)),H[G++]=K,H[G++]=Q,H[G++]=$,H[G++]=tt,H[G++]=J,H[G++]=0,H[G++]=et,H[G++]=z,H[G++]=O,H[G++]=D,R[0]=Math.min(R[0],$),R[1]=Math.min(R[1],tt),R[2]=Math.min(R[2],J),U=Math.min(U,et),j[0]=Math.max(j[0],$),j[1]=Math.max(j[1],tt),j[2]=Math.max(j[2],J),V=Math.max(V,et),Y+=1}}for(t.intensityBounds&&(U=+t.intensityBounds[0],V=+t.intensityBounds[1]),o=6;o<G;o+=10)H[o]=(H[o]-U)/(V-U);this._vertexCount=Y,this._coordinateBuffer.update(H.subarray(0,G)),s.freeFloat(H),s.free(M.data),this.bounds=[R,j],this.intensity=t.intensity||this._field[2],this.intensityBounds[0]===U&&this.intensityBounds[1]===V||(r=!0),this.intensityBounds=[U,V]}if("levels"in t){var rt=t.levels;for(rt=Array.isArray(rt[0])?rt.slice():[[],[],rt],o=0;o<3;++o)rt[o]=rt[o].slice(),rt.sort(function(t,e){return t-e});t:for(o=0;o<3;++o){if(rt[o].length!==this.contourLevels[o].length){r=!0;break}for(x=0;x<rt[o].length;++x)if(rt[o][x]!==this.contourLevels[o][x]){r=!0;break t}}this.contourLevels=rt}if(r){_=this._field,a=this.shape;for(var nt=[],it=0;it<3;++it){rt=this.contourLevels[it];var at=[],ot=[],st=[0,0,0];for(o=0;o<rt.length;++o){var lt=h(this._field[it],rt[o]);at.push(nt.length/5|0),Y=0;t:for(x=0;x<lt.cells.length;++x){var ct=lt.cells[x];for(Z=0;Z<2;++Z){var ut=lt.positions[ct[Z]],ft=ut[0],ht=0|Math.floor(ft),dt=ft-ht,pt=ut[1],mt=0|Math.floor(pt),vt=pt-mt,gt=!1;e:for(var yt=0;yt<3;++yt){st[yt]=0;var bt=(it+yt+1)%3;for(W=0;W<2;++W){var xt=W?dt:1-dt;for(K=0|Math.min(Math.max(ht+W,0),a[0]),X=0;X<2;++X){var _t=X?vt:1-vt;if(Q=0|Math.min(Math.max(mt+X,0),a[1]),J=yt<2?this._field[bt].get(K,Q):(this.intensity.get(K,Q)-this.intensityBounds[0])/(this.intensityBounds[1]-this.intensityBounds[0]),!isFinite(J)||isNaN(J)){gt=!0;break e}var wt=xt*_t;st[yt]+=wt*J}}}if(gt){if(Z>0){for(var Mt=0;Mt<5;++Mt)nt.pop();Y-=1}continue t}nt.push(st[0],st[1],ut[0],ut[1],st[2]),Y+=1}}ot.push(Y)}this._contourOffsets[it]=at,this._contourCounts[it]=ot}var kt=s.mallocFloat(nt.length);for(o=0;o<nt.length;++o)kt[o]=nt[o];this._contourBuffer.update(kt),s.freeFloat(kt)}t.colormap&&this._colorMap.setPixels(function(t){var e=u([l({colormap:t,nshades:T,format:"rgba"}).map(function(t){return[t[0],t[1],t[2],255*t[3]]})]);return c.divseq(e,255),e}(t.colormap))},S.dispose=function(){this._shader.dispose(),this._vao.dispose(),this._coordinateBuffer.dispose(),this._colorMap.dispose(),this._contourBuffer.dispose(),this._contourVAO.dispose(),this._contourShader.dispose(),this._contourPickShader.dispose(),this._dynamicBuffer.dispose(),this._dynamicVAO.dispose();for(var t=0;t<3;++t)s.freeFloat(this._field[t].data)},S.highlight=function(t){if(!t)return this._dynamicCounts=[0,0,0],this.dyanamicLevel=[NaN,NaN,NaN],void(this.highlightLevel=[-1,-1,-1]);for(var e=0;e<3;++e)this.enableHighlight[e]?this.highlightLevel[e]=t.level[e]:this.highlightLevel[e]=-1;var r;if(r=this.snapToData?t.dataCoordinate:t.position,this.enableDynamic[0]&&r[0]!==this.dynamicLevel[0]||this.enableDynamic[1]&&r[1]!==this.dynamicLevel[1]||this.enableDynamic[2]&&r[2]!==this.dynamicLevel[2]){for(var n=0,i=this.shape,a=s.mallocFloat(12*i[0]*i[1]),o=0;o<3;++o)if(this.enableDynamic[o]){this.dynamicLevel[o]=r[o];var l=(o+1)%3,c=(o+2)%3,u=this._field[o],f=this._field[l],d=this._field[c],p=(this.intensity,h(u,r[o])),m=p.cells,v=p.positions;for(this._dynamicOffsets[o]=n,e=0;e<m.length;++e)for(var g=m[e],y=0;y<2;++y){var b=v[g[y]],x=+b[0],_=0|x,w=0|Math.min(_+1,i[0]),M=x-_,k=1-M,A=+b[1],T=0|A,E=0|Math.min(T+1,i[1]),S=A-T,L=1-S,C=k*L,P=k*S,z=M*L,O=M*S,D=C*f.get(_,T)+P*f.get(_,E)+z*f.get(w,T)+O*f.get(w,E),I=C*d.get(_,T)+P*d.get(_,E)+z*d.get(w,T)+O*d.get(w,E);if(isNaN(D)||isNaN(I)){y&&(n-=1);break}a[2*n+0]=D,a[2*n+1]=I,n+=1}this._dynamicCounts[o]=n-this._dynamicOffsets[o]}else this.dynamicLevel[o]=NaN,this._dynamicCounts[o]=0;this._dynamicBuffer.update(a.subarray(0,2*n)),s.freeFloat(a)}}},{"./lib/shaders":230,"binary-search-bounds":70,"bit-twiddle":71,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-texture2d":233,"gl-vao":237,ndarray:439,"ndarray-gradient":430,"ndarray-ops":433,"ndarray-pack":434,"surface-nets":520,"typedarray-pool":534}],233:[function(t,e,r){"use strict";var n=t("ndarray"),i=t("ndarray-ops"),a=t("typedarray-pool");e.exports=function(t){if(arguments.length<=1)throw new Error("gl-texture2d: Missing arguments for texture2d constructor");o||function(t){o=[t.LINEAR,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_NEAREST],s=[t.NEAREST,t.LINEAR,t.NEAREST_MIPMAP_NEAREST,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_LINEAR],l=[t.REPEAT,t.CLAMP_TO_EDGE,t.MIRRORED_REPEAT]}(t);if("number"==typeof arguments[1])return v(t,arguments[1],arguments[2],arguments[3]||t.RGBA,arguments[4]||t.UNSIGNED_BYTE);if(Array.isArray(arguments[1]))return v(t,0|arguments[1][0],0|arguments[1][1],arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if("object"==typeof arguments[1]){var e=arguments[1],r=c(e)?e:e.raw;if(r)return function(t,e,r,n,i,a){var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,i,i,a,e),new h(t,o,r,n,i,a)}(t,r,0|e.width,0|e.height,arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if(e.shape&&e.data&&e.stride)return function(t,e){var r=e.dtype,o=e.shape.slice(),s=t.getParameter(t.MAX_TEXTURE_SIZE);if(o[0]<0||o[0]>s||o[1]<0||o[1]>s)throw new Error("gl-texture2d: Invalid texture size");var l=p(o,e.stride.slice()),c=0;"float32"===r?c=t.FLOAT:"float64"===r?(c=t.FLOAT,l=!1,r="float32"):"uint8"===r?c=t.UNSIGNED_BYTE:(c=t.UNSIGNED_BYTE,l=!1,r="uint8");var f,d,v=0;if(2===o.length)v=t.LUMINANCE,o=[o[0],o[1],1],e=n(e.data,o,[e.stride[0],e.stride[1],1],e.offset);else{if(3!==o.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===o[2])v=t.ALPHA;else if(2===o[2])v=t.LUMINANCE_ALPHA;else if(3===o[2])v=t.RGB;else{if(4!==o[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}}c!==t.FLOAT||t.getExtension("OES_texture_float")||(c=t.UNSIGNED_BYTE,l=!1);var g=e.size;if(l)f=0===e.offset&&e.data.length===g?e.data:e.data.subarray(e.offset,e.offset+g);else{var y=[o[2],o[2]*o[0],1];d=a.malloc(g,r);var b=n(d,o,y,0);"float32"!==r&&"float64"!==r||c!==t.UNSIGNED_BYTE?i.assign(b,e):u(b,e),f=d.subarray(0,g)}var x=m(t);t.texImage2D(t.TEXTURE_2D,0,v,o[0],o[1],0,v,c,f),l||a.free(d);return new h(t,x,o[0],o[1],v,c)}(t,e)}throw new Error("gl-texture2d: Invalid arguments for texture2d constructor")};var o=null,s=null,l=null;function c(t){return"undefined"!=typeof HTMLCanvasElement&&t instanceof HTMLCanvasElement||"undefined"!=typeof HTMLImageElement&&t instanceof HTMLImageElement||"undefined"!=typeof HTMLVideoElement&&t instanceof HTMLVideoElement||"undefined"!=typeof ImageData&&t instanceof ImageData}var u=function(t,e){i.muls(t,e,255)};function f(t,e,r){var n=t.gl,i=n.getParameter(n.MAX_TEXTURE_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-texture2d: Invalid texture size");return t._shape=[e,r],t.bind(),n.texImage2D(n.TEXTURE_2D,0,t.format,e,r,0,t.format,t.type,null),t._mipLevels=[0],t}function h(t,e,r,n,i,a){this.gl=t,this.handle=e,this.format=i,this.type=a,this._shape=[r,n],this._mipLevels=[0],this._magFilter=t.NEAREST,this._minFilter=t.NEAREST,this._wrapS=t.CLAMP_TO_EDGE,this._wrapT=t.CLAMP_TO_EDGE,this._anisoSamples=1;var o=this,s=[this._wrapS,this._wrapT];Object.defineProperties(s,[{get:function(){return o._wrapS},set:function(t){return o.wrapS=t}},{get:function(){return o._wrapT},set:function(t){return o.wrapT=t}}]),this._wrapVector=s;var l=[this._shape[0],this._shape[1]];Object.defineProperties(l,[{get:function(){return o._shape[0]},set:function(t){return o.width=t}},{get:function(){return o._shape[1]},set:function(t){return o.height=t}}]),this._shapeVector=l}var d=h.prototype;function p(t,e){return 3===t.length?1===e[2]&&e[1]===t[0]*t[2]&&e[0]===t[2]:1===e[0]&&e[1]===t[0]}function m(t){var e=t.createTexture();return t.bindTexture(t.TEXTURE_2D,e),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),e}function v(t,e,r,n,i){var a=t.getParameter(t.MAX_TEXTURE_SIZE);if(e<0||e>a||r<0||r>a)throw new Error("gl-texture2d: Invalid texture shape");if(i===t.FLOAT&&!t.getExtension("OES_texture_float"))throw new Error("gl-texture2d: Floating point textures not supported on this platform");var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,n,e,r,0,n,i,null),new h(t,o,e,r,n,i)}Object.defineProperties(d,{minFilter:{get:function(){return this._minFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MIN_FILTER,t),this._minFilter=t}},magFilter:{get:function(){return this._magFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MAG_FILTER,t),this._magFilter=t}},mipSamples:{get:function(){return this._anisoSamples},set:function(t){var e=this._anisoSamples;if(this._anisoSamples=0|Math.max(t,1),e!==this._anisoSamples){var r=this.gl.getExtension("EXT_texture_filter_anisotropic");r&&this.gl.texParameterf(this.gl.TEXTURE_2D,r.TEXTURE_MAX_ANISOTROPY_EXT,this._anisoSamples)}return this._anisoSamples}},wrapS:{get:function(){return this._wrapS},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_S,t),this._wrapS=t}},wrapT:{get:function(){return this._wrapT},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_T,t),this._wrapT=t}},wrap:{get:function(){return this._wrapVector},set:function(t){if(Array.isArray(t)||(t=[t,t]),2!==t.length)throw new Error("gl-texture2d: Must specify wrap mode for rows and columns");for(var e=0;e<2;++e)if(l.indexOf(t[e])<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);this._wrapS=t[0],this._wrapT=t[1];var r=this.gl;return this.bind(),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_S,this._wrapS),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_T,this._wrapT),t}},shape:{get:function(){return this._shapeVector},set:function(t){if(Array.isArray(t)){if(2!==t.length)throw new Error("gl-texture2d: Invalid texture shape")}else t=[0|t,0|t];return f(this,0|t[0],0|t[1]),[0|t[0],0|t[1]]}},width:{get:function(){return this._shape[0]},set:function(t){return f(this,t|=0,this._shape[1]),t}},height:{get:function(){return this._shape[1]},set:function(t){return t|=0,f(this,this._shape[0],t),t}}}),d.bind=function(t){var e=this.gl;return void 0!==t&&e.activeTexture(e.TEXTURE0+(0|t)),e.bindTexture(e.TEXTURE_2D,this.handle),void 0!==t?0|t:e.getParameter(e.ACTIVE_TEXTURE)-e.TEXTURE0},d.dispose=function(){this.gl.deleteTexture(this.handle)},d.generateMipmap=function(){this.bind(),this.gl.generateMipmap(this.gl.TEXTURE_2D);for(var t=Math.min(this._shape[0],this._shape[1]),e=0;t>0;++e,t>>>=1)this._mipLevels.indexOf(e)<0&&this._mipLevels.push(e)},d.setPixels=function(t,e,r,o){var s=this.gl;this.bind(),Array.isArray(e)?(o=r,r=0|e[1],e=0|e[0]):(e=e||0,r=r||0),o=o||0;var l=c(t)?t:t.raw;if(l){this._mipLevels.indexOf(o)<0?(s.texImage2D(s.TEXTURE_2D,0,this.format,this.format,this.type,l),this._mipLevels.push(o)):s.texSubImage2D(s.TEXTURE_2D,o,e,r,this.format,this.type,l)}else{if(!(t.shape&&t.stride&&t.data))throw new Error("gl-texture2d: Unsupported data type");if(t.shape.length<2||e+t.shape[1]>this._shape[1]>>>o||r+t.shape[0]>this._shape[0]>>>o||e<0||r<0)throw new Error("gl-texture2d: Texture dimensions are out of bounds");!function(t,e,r,o,s,l,c,f){var h=f.dtype,d=f.shape.slice();if(d.length<2||d.length>3)throw new Error("gl-texture2d: Invalid ndarray, must be 2d or 3d");var m=0,v=0,g=p(d,f.stride.slice());"float32"===h?m=t.FLOAT:"float64"===h?(m=t.FLOAT,g=!1,h="float32"):"uint8"===h?m=t.UNSIGNED_BYTE:(m=t.UNSIGNED_BYTE,g=!1,h="uint8");if(2===d.length)v=t.LUMINANCE,d=[d[0],d[1],1],f=n(f.data,d,[f.stride[0],f.stride[1],1],f.offset);else{if(3!==d.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===d[2])v=t.ALPHA;else if(2===d[2])v=t.LUMINANCE_ALPHA;else if(3===d[2])v=t.RGB;else{if(4!==d[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}d[2]}v!==t.LUMINANCE&&v!==t.ALPHA||s!==t.LUMINANCE&&s!==t.ALPHA||(v=s);if(v!==s)throw new Error("gl-texture2d: Incompatible texture format for setPixels");var y=f.size,b=c.indexOf(o)<0;b&&c.push(o);if(m===l&&g)0===f.offset&&f.data.length===y?b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data):b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data.subarray(f.offset,f.offset+y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data.subarray(f.offset,f.offset+y));else{var x;x=l===t.FLOAT?a.mallocFloat32(y):a.mallocUint8(y);var _=n(x,d,[d[2],d[2]*d[0],1]);m===t.FLOAT&&l===t.UNSIGNED_BYTE?u(_,f):i.assign(_,f),b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,x.subarray(0,y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,x.subarray(0,y)),l===t.FLOAT?a.freeFloat32(x):a.freeUint8(x)}}(s,e,r,o,this.format,this.type,this._mipLevels,t)}}},{ndarray:439,"ndarray-ops":433,"typedarray-pool":534}],234:[function(t,e,r){"use strict";e.exports=function(t,e,r){e?e.bind():t.bindBuffer(t.ELEMENT_ARRAY_BUFFER,null);var n=0|t.getParameter(t.MAX_VERTEX_ATTRIBS);if(r){if(r.length>n)throw new Error("gl-vao: Too many vertex attributes");for(var i=0;i<r.length;++i){var a=r[i];if(a.buffer){var o=a.buffer,s=a.size||4,l=a.type||t.FLOAT,c=!!a.normalized,u=a.stride||0,f=a.offset||0;o.bind(),t.enableVertexAttribArray(i),t.vertexAttribPointer(i,s,l,c,u,f)}else{if("number"==typeof a)t.vertexAttrib1f(i,a);else if(1===a.length)t.vertexAttrib1f(i,a[0]);else if(2===a.length)t.vertexAttrib2f(i,a[0],a[1]);else if(3===a.length)t.vertexAttrib3f(i,a[0],a[1],a[2]);else{if(4!==a.length)throw new Error("gl-vao: Invalid vertex attribute");t.vertexAttrib4f(i,a[0],a[1],a[2],a[3])}t.disableVertexAttribArray(i)}}for(;i<n;++i)t.disableVertexAttribArray(i)}else for(t.bindBuffer(t.ARRAY_BUFFER,null),i=0;i<n;++i)t.disableVertexAttribArray(i)}},{}],235:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t){this.gl=t,this._elements=null,this._attributes=null,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(){n(this.gl,this._elements,this._attributes)},i.prototype.update=function(t,e,r){this._elements=e,this._attributes=t,this._elementsType=r||this.gl.UNSIGNED_SHORT},i.prototype.dispose=function(){},i.prototype.unbind=function(){},i.prototype.draw=function(t,e,r){r=r||0;var n=this.gl;this._elements?n.drawElements(t,e,this._elementsType,r):n.drawArrays(t,r,e)},e.exports=function(t){return new i(t)}},{"./do-bind.js":234}],236:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t,e,r,n,i,a){this.location=t,this.dimension=e,this.a=r,this.b=n,this.c=i,this.d=a}function a(t,e,r){this.gl=t,this._ext=e,this.handle=r,this._attribs=[],this._useElements=!1,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(t){switch(this.dimension){case 1:t.vertexAttrib1f(this.location,this.a);break;case 2:t.vertexAttrib2f(this.location,this.a,this.b);break;case 3:t.vertexAttrib3f(this.location,this.a,this.b,this.c);break;case 4:t.vertexAttrib4f(this.location,this.a,this.b,this.c,this.d)}},a.prototype.bind=function(){this._ext.bindVertexArrayOES(this.handle);for(var t=0;t<this._attribs.length;++t)this._attribs[t].bind(this.gl)},a.prototype.unbind=function(){this._ext.bindVertexArrayOES(null)},a.prototype.dispose=function(){this._ext.deleteVertexArrayOES(this.handle)},a.prototype.update=function(t,e,r){if(this.bind(),n(this.gl,e,t),this.unbind(),this._attribs.length=0,t)for(var a=0;a<t.length;++a){var o=t[a];"number"==typeof 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float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\n\nvoid main() {\n    gl_FragColor = u_color;\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, step(32767.0, a_pos.x), 1);\n}\n"},fill:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_FragColor = color * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n}\n"},circle:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    float t = smoothstep(1.0 - max(blur, v_antialiasblur), 1.0, length(v_extrude));\n    gl_FragColor = color * (1.0 - t) * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform bool u_scale_with_map;\nuniform vec2 u_extrude_scale;\nuniform float u_devicepixelratio;\n\nattribute vec2 a_pos;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define mediump float radius\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main(void) {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize mediump float radius\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    // unencode the extrusion vector that we snuck into the a_pos vector\n    v_extrude = vec2(mod(a_pos, 2.0) * 2.0 - 1.0);\n\n    vec2 extrude = v_extrude * radius * u_extrude_scale;\n    // multiply a_pos by 0.5, since we had it * 2 in order to sneak\n    // in extrusion data\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5), 0, 1);\n\n    if (u_scale_with_map) {\n        gl_Position.xy += extrude;\n    } else {\n        gl_Position.xy += extrude * gl_Position.w;\n    }\n\n    // This is a minimum blur distance that serves as a faux-antialiasing for\n    // the circle. since blur is a ratio of the circle's size and the intent is\n    // to keep the blur at roughly 1px, the two are inversely related.\n    v_antialiasblur = 1.0 / u_devicepixelratio / radius;\n}\n"},line:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform float u_blur;\n\nvarying vec2 v_linewidth;\nvarying vec2 v_normal;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\nuniform mediump float u_blur;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_blur;\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_fade;\nuniform float u_opacity;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float x_a = mod(v_linesofar / u_pattern_size_a.x, 1.0);\n    float x_b = mod(v_linesofar / u_pattern_size_b.x, 1.0);\n    float y_a = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_a.y);\n    float y_b = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_b.y);\n    vec2 pos_a = mix(u_pattern_tl_a, u_pattern_br_a, vec2(x_a, y_a));\n    vec2 pos_b = mix(u_pattern_tl_b, u_pattern_br_b, vec2(x_b, y_b));\n\n    vec4 color = mix(texture2D(u_image, pos_a), texture2D(u_image, pos_b), u_fade);\n\n    alpha *= u_opacity;\n\n    gl_FragColor = color * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n    v_linesofar = a_linesofar;\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linesdfpattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\n\nuniform float u_blur;\nuniform sampler2D u_image;\nuniform float u_sdfgamma;\nuniform float u_mix;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float sdfdist_a = texture2D(u_image, v_tex_a).a;\n    float sdfdist_b = texture2D(u_image, v_tex_b).a;\n    float sdfdist = mix(sdfdist_a, sdfdist_b, u_mix);\n    alpha *= smoothstep(0.5 - u_sdfgamma, 0.5 + u_sdfgamma, sdfdist);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform vec2 u_patternscale_a;\nuniform float u_tex_y_a;\nuniform vec2 u_patternscale_b;\nuniform float u_tex_y_b;\nuniform float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    v_tex_a = vec2(a_linesofar * u_patternscale_a.x, normal.y * u_patternscale_a.y + u_tex_y_a);\n    v_tex_b = vec2(a_linesofar * u_patternscale_b.x, normal.y * u_patternscale_b.y + u_tex_y_b);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},outline:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_pos;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    gl_FragColor = outline_color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos;\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},outlinepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    // find distance to outline for alpha interpolation\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    \n\n    gl_FragColor = mix(color1, color2, u_mix) * alpha * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},pattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    gl_FragColor = mix(color1, color2, u_mix) * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n}\n"},raster:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity0;\nuniform float u_opacity1;\nuniform sampler2D u_image0;\nuniform sampler2D u_image1;\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nuniform float u_brightness_low;\nuniform float u_brightness_high;\n\nuniform float u_saturation_factor;\nuniform float u_contrast_factor;\nuniform vec3 u_spin_weights;\n\nvoid main() {\n\n    // read and cross-fade colors from the main and parent tiles\n    vec4 color0 = texture2D(u_image0, v_pos0);\n    vec4 color1 = texture2D(u_image1, v_pos1);\n    vec4 color = color0 * u_opacity0 + color1 * u_opacity1;\n    vec3 rgb = color.rgb;\n\n    // spin\n    rgb = vec3(\n        dot(rgb, u_spin_weights.xyz),\n        dot(rgb, u_spin_weights.zxy),\n        dot(rgb, u_spin_weights.yzx));\n\n    // saturation\n    float average = (color.r + color.g + color.b) / 3.0;\n    rgb += (average - rgb) * u_saturation_factor;\n\n    // contrast\n    rgb = (rgb - 0.5) * u_contrast_factor + 0.5;\n\n    // brightness\n    vec3 u_high_vec = vec3(u_brightness_low, u_brightness_low, u_brightness_low);\n    vec3 u_low_vec = vec3(u_brightness_high, u_brightness_high, u_brightness_high);\n\n    gl_FragColor = vec4(mix(u_high_vec, u_low_vec, rgb), color.a);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_tl_parent;\nuniform float u_scale_parent;\nuniform float u_buffer_scale;\n\nattribute vec2 a_pos;\nattribute vec2 a_texture_pos;\n\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos0 = (((a_texture_pos / 32767.0) - 0.5) / u_buffer_scale ) + 0.5;\n    v_pos1 = (v_pos0 * u_scale_parent) + u_tl_parent;\n}\n"},icon:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp float u_opacity;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    lowp float alpha = texture2D(u_fadetexture, v_fade_tex).a * u_opacity;\n    gl_FragColor = texture2D(u_texture, v_tex) * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n    if (u_rotate_with_map) {\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    } else {\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},sdf:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform lowp float u_buffer;\nuniform lowp float u_gamma;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    lowp float dist = texture2D(u_texture, v_tex).a;\n    lowp float fade_alpha = texture2D(u_fadetexture, v_fade_tex).a;\n    lowp float gamma = u_gamma * v_gamma_scale;\n    lowp float alpha = smoothstep(u_buffer - gamma, u_buffer + gamma, dist) * fade_alpha;\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nconst float PI = 3.141592653589793;\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform bool u_pitch_with_map;\nuniform mediump float u_pitch;\nuniform mediump float u_bearing;\nuniform mediump float u_aspect_ratio;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    // pitch-alignment: map\n    // rotation-alignment: map | viewport\n    if (u_pitch_with_map) {\n        lowp float angle = u_rotate_with_map ? (a_data[1] / 256.0 * 2.0 * PI) : u_bearing;\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, asin, -1.0 * asin, acos);\n        vec2 offset = RotationMatrix * a_offset;\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: map\n    } else if (u_rotate_with_map) {\n        // foreshortening factor to apply on pitched maps\n        // as a label goes from horizontal <=> vertical in angle\n        // it goes from 0% foreshortening to up to around 70% foreshortening\n        lowp float pitchfactor = 1.0 - cos(u_pitch * sin(u_pitch * 0.75));\n\n        lowp float lineangle = a_data[1] / 256.0 * 2.0 * PI;\n\n        // use the lineangle to position points a,b along the line\n        // project the points and calculate the label angle in projected space\n        // this calculation allows labels to be rendered unskewed on pitched maps\n        vec4 a = u_matrix * vec4(a_pos, 0, 1);\n        vec4 b = u_matrix * vec4(a_pos + vec2(cos(lineangle),sin(lineangle)), 0, 1);\n        lowp float angle = atan((b[1]/b[3] - a[1]/a[3])/u_aspect_ratio, b[0]/b[3] - a[0]/a[3]);\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, -1.0 * asin, asin, acos);\n\n        vec2 offset = RotationMatrix * (vec2((1.0-pitchfactor)+(pitchfactor*cos(angle*2.0)), 1.0) * a_offset);\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: viewport\n    } else {\n        vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_gamma_scale = (gl_Position.w - 0.5);\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},collisionbox:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_zoom;\nuniform float u_maxzoom;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n\n    float alpha = 0.5;\n\n    gl_FragColor = vec4(0.0, 1.0, 0.0, 1.0) * alpha;\n\n    if (v_placement_zoom > u_zoom) {\n        gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0) * alpha;\n    }\n\n    if (u_zoom >= v_max_zoom) {\n        gl_FragColor = vec4(0.0, 0.0, 0.0, 1.0) * alpha * 0.25;\n    }\n\n    if (v_placement_zoom >= u_maxzoom) {\n        gl_FragColor = vec4(0.0, 0.0, 1.0, 1.0) * alpha * 0.2;\n    }\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_extrude;\nattribute vec2 a_data;\n\nuniform mat4 u_matrix;\nuniform float u_scale;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos + a_extrude / u_scale, 0.0, 1.0);\n\n    v_max_zoom = a_data.x;\n    v_placement_zoom = a_data.y;\n}\n"}},e.exports.util="float evaluate_zoom_function_1(const vec4 values, const float t) {\n    if (t < 1.0) {\n        return mix(values[0], values[1], t);\n    } else if (t < 2.0) {\n        return mix(values[1], values[2], t - 1.0);\n    } else {\n        return mix(values[2], values[3], t - 2.0);\n    }\n}\nvec4 evaluate_zoom_function_4(const vec4 value0, const vec4 value1, const vec4 value2, const vec4 value3, const float t) {\n    if (t < 1.0) {\n        return mix(value0, value1, t);\n    } else if (t < 2.0) {\n        return mix(value1, value2, t - 1.0);\n    } else {\n        return mix(value2, value3, t - 2.0);\n    }\n}\n"},{path:449}],276:[function(t,e,r){"use strict";var n=t("util").format;e.exports=function(t,e){this.message=(t?t+": ":"")+n.apply(n,Array.prototype.slice.call(arguments,2)),null!==e&&void 0!==e&&e.__line__&&(this.line=e.__line__)}},{util:543}],277:[function(t,e,r){"use strict";e.exports=function(t){for(var e=1;e<arguments.length;e++){var r=arguments[e];for(var n in r)t[n]=r[n]}return t}},{}],278:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number?"number":t instanceof String?"string":t instanceof Boolean?"boolean":Array.isArray(t)?"array":null===t?"null":typeof t}},{}],279:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number||t instanceof String||t instanceof Boolean?t.valueOf():t}},{}],280:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("../util/extend");e.exports=function(e){var 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n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate"),o=t("./validate_object"),s=t("./validate_array"),l=t("./validate_number");e.exports=function(t){var e,r=t.valueSpec,c=void 0!==t.value.property||"object"===e,u=void 0===t.value.property||"object"===e,f=o({key:t.key,value:t.value,valueSpec:t.styleSpec.function,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{stops:function(t){var e=[],r=t.value;e=e.concat(s({key:t.key,value:r,valueSpec:t.valueSpec,style:t.style,styleSpec:t.styleSpec,arrayElementValidator:h})),"array"===i(r)&&0===r.length&&e.push(new n(t.key,r,"array must have at least one stop"));return e}}});return t.styleSpec.$version>=8&&(c&&!t.valueSpec["property-function"]?f.push(new n(t.key,t.value,"property functions not supported")):u&&!t.valueSpec["zoom-function"]&&f.push(new n(t.key,t.value,"zoom functions not supported"))),f;function h(t){var s=[],c=t.value,f=t.key;if("array"!==i(c))return[new n(f,c,"array expected, %s 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order"))),s}function d(t){var e=[],r=i(t.value);return"number"!==r&&"string"!==r&&"array"!==r&&e.push(new n(t.key,t.value,"property value must be a number, string or array")),e}}},{"../error/validation_error":276,"../util/get_type":278,"./validate":280,"./validate_array":281,"./validate_number":291,"./validate_object":292}],288:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("./validate_string");e.exports=function(t){var e=t.value,r=t.key,a=i(t);return a.length?a:(-1===e.indexOf("{fontstack}")&&a.push(new n(r,e,'"glyphs" url must include a "{fontstack}" token')),-1===e.indexOf("{range}")&&a.push(new n(r,e,'"glyphs" url must include a "{range}" token')),a)}},{"../error/validation_error":276,"./validate_string":295}],289:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/unbundle_jsonlint"),a=t("./validate_object"),o=t("./validate_filter"),s=t("./validate_paint_property"),l=t("./validate_layout_property"),c=t("../util/extend");e.exports=function(t){var e=[],r=t.value,u=t.key,f=t.style,h=t.styleSpec;r.type||r.ref||e.push(new n(u,r,'either "type" or "ref" is required'));var d,p=i(r.type),m=i(r.ref);if(r.id)for(var v=0;v<t.arrayIndex;v++){var g=f.layers[v];i(g.id)===i(r.id)&&e.push(new n(u,r.id,'duplicate layer id "%s", previously used at line %d',r.id,g.id.__line__))}if("ref"in r)["type","source","source-layer","filter","layout"].forEach(function(t){t in r&&e.push(new n(u,r[t],'"%s" is prohibited for ref layers',t))}),f.layers.forEach(function(t){t.id==m&&(d=t)}),d?d.ref?e.push(new n(u,r.ref,"ref cannot reference another ref layer")):p=i(d.type):e.push(new n(u,r.ref,'ref layer "%s" not found',m));else if("background"!==p)if(r.source){var y=f.sources&&f.sources[r.source];y?"vector"==y.type&&"raster"==p?e.push(new n(u,r.source,'layer "%s" requires a raster source',r.id)):"raster"==y.type&&"raster"!=p?e.push(new n(u,r.source,'layer "%s" requires a vector source',r.id)):"vector"!=y.type||r["source-layer"]||e.push(new n(u,r,'layer "%s" must specify a "source-layer"',r.id)):e.push(new n(u,r.source,'source "%s" not found',r.source))}else e.push(new n(u,r,'missing required property "source"'));return e=e.concat(a({key:u,value:r,valueSpec:h.layer,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{filter:o,layout:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return l(c({layerType:p},t))}}})},paint:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return s(c({layerType:p},t))}}})}}}))}},{"../error/validation_error":276,"../util/extend":277,"../util/unbundle_jsonlint":279,"./validate_filter":286,"./validate_layout_property":290,"./validate_object":292,"./validate_paint_property":293}],290:[function(t,e,r){"use strict";var n=t("./validate"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.style,a=t.styleSpec,o=t.value,s=t.objectKey,l=a["layout_"+t.layerType];if(t.valueSpec||l[s]){var c=[];return"symbol"===t.layerType&&("icon-image"===s&&r&&!r.sprite?c.push(new i(e,o,'use of "icon-image" requires a style "sprite" property')):"text-field"===s&&r&&!r.glyphs&&c.push(new i(e,o,'use of "text-field" requires a style "glyphs" property'))),c.concat(n({key:t.key,value:o,valueSpec:t.valueSpec||l[s],style:r,styleSpec:a}))}return[new i(e,o,'unknown property "%s"',s)]}},{"../error/validation_error":276,"./validate":280}],291:[function(t,e,r){"use strict";var n=t("../util/get_type"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.value,a=t.valueSpec,o=n(r);return"number"!==o?[new i(e,r,"number expected, %s found",o)]:"minimum"in a&&r<a.minimum?[new i(e,r,"%s is less than the minimum value %s",r,a.minimum)]:"maximum"in a&&r>a.maximum?[new i(e,r,"%s is greater than the maximum value %s",r,a.maximum)]:[]}},{"../error/validation_error":276,"../util/get_type":278}],292:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate");e.exports=function(t){var e=t.key,r=t.value,o=t.valueSpec,s=t.objectElementValidators||{},l=t.style,c=t.styleSpec,u=[],f=i(r);if("object"!==f)return[new n(e,r,"object expected, %s found",f)];for(var h in r){var d=h.split(".")[0],p=o&&(o[d]||o["*"]),m=s[d]||s["*"];p||m?u=u.concat((m||a)({key:(e?e+".":e)+h,value:r[h],valueSpec:p,style:l,styleSpec:c,object:r,objectKey:h})):""!==e&&1!==e.split(".").length&&u.push(new n(e,r[h],'unknown property 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v=t.childLayers[m],g=n[v.id],y=p.name;l("a_"===p.name.slice(0,2));var b,x=p.name.slice(2);if(g.fragmentPragmas.initialize[x]="",v.isPaintValueFeatureConstant(p.paintProperty))g.uniforms.push(p),g.fragmentPragmas.define[x]=g.vertexPragmas.define[x]=["uniform",c,u,y].join(" ")+";",g.fragmentPragmas.initialize[x]=g.vertexPragmas.initialize[x]=[c,u,x,"=",y].join(" ")+";\n";else if(v.isPaintValueZoomConstant(p.paintProperty)){g.attributes.push(o.extend({},p,{name:y})),b=["varying",c,u,x].join(" ")+";\n";var _=[g.fragmentPragmas.define[x],"attribute",c,u,y].join(" ")+";\n";g.fragmentPragmas.define[x]=b,g.vertexPragmas.define[x]=b+_,g.vertexPragmas.initialize[x]=[x,"=",y,"/",p.multiplier.toFixed(1)].join(" ")+";\n"}else{for(var w="u_"+y.slice(2)+"_t",M=v.getPaintValueStopZoomLevels(p.paintProperty),k=0;k<M.length&&M[k]<t.zoom;)k++;for(var A=Math.max(0,Math.min(M.length-4,k-2)),T=[],E=0;E<4;E++)T.push(M[Math.min(A+E,M.length-1)]);b=["varying",c,u,x].join(" 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a(t,{layoutVertexArrayType:i.layoutVertexArrayType.serialize(),elementArrayType:i.elementArrayType&&i.elementArrayType.serialize(),elementArrayType2:i.elementArrayType2&&i.elementArrayType2.serialize(),paintVertexArrayTypes:o})})})}}e.exports=c,c.create=function(e){return new({fill:t("./bucket/fill_bucket"),line:t("./bucket/line_bucket"),circle:t("./bucket/circle_bucket"),symbol:t("./bucket/symbol_bucket")}[e.layer.type])(e)},c.EXTENT=8192,c.prototype.populateArrays=function(){this.createArrays(),this.recalculateStyleLayers();for(var t=0;t<this.features.length;t++)this.addFeature(this.features[t]);this.trimArrays()},c.prototype.prepareArrayGroup=function(t,e){var r=this.arrayGroups[t],n=r.length&&r[r.length-1];return n&&n.hasCapacityFor(e)||((n=new i({layoutVertexArrayType:this.programInterfaces[t].layoutVertexArrayType,elementArrayType:this.programInterfaces[t].elementArrayType,elementArrayType2:this.programInterfaces[t].elementArrayType2,paintVertexArrayTypes:this.paintVertexArrayTypes[t]})).index=r.length,r.push(n)),n},c.prototype.createArrays=function(){for(var t in this.arrayGroups={},this.paintVertexArrayTypes={},this.programInterfaces){this.arrayGroups[t]=[];var e=this.paintVertexArrayTypes[t]={},r=this.paintAttributes[t];for(var n in r)e[n]=new c.VertexArrayType(r[n].attributes)}},c.prototype.destroy=function(t){for(var e in this.bufferGroups)for(var r=this.bufferGroups[e],n=0;n<r.length;n++)r[n].destroy(t)},c.prototype.trimArrays=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)e[r].trim()},c.prototype.isEmpty=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)if(!e[r].isEmpty())return!1;return!0},c.prototype.getTransferables=function(t){for(var e in this.arrayGroups)for(var r=this.arrayGroups[e],n=0;n<r.length;n++)r[n].getTransferables(t)},c.prototype.setUniforms=function(t,e,r,n,i){for(var a=this.paintAttributes[e][n.id].uniforms,o=0;o<a.length;o++){var s=a[o],l=r[s.name];t["uniform"+s.components+"fv"](l,s.getValue(n,i))}},c.prototype.serialize=function(){return{layerId:this.layer.id,zoom:this.zoom,arrays:o.mapObject(this.arrayGroups,function(t){return t.map(function(t){return t.serialize()})}),paintVertexArrayTypes:o.mapObject(this.paintVertexArrayTypes,function(t){return o.mapObject(t,function(t){return t.serialize()})}),childLayerIds:this.childLayers.map(function(t){return t.id})}},c.prototype.createFilter=function(){this.filter||(this.filter=n(this.layer.filter))};var u={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};function f(t,e){return function(r,n,i){if(1===e.length)return t.getValue(r,o.extend({},n,{zoom:e[0]}),i);for(var a=[],s=0;s<e.length;s++){var l=e[s];a.push(t.getValue(r,o.extend({},n,{zoom:l}),i)[0])}return a}}function h(t,e){return function(r,n){var i=r.getPaintInterpolationT(t.paintProperty,n.zoom);return[Math.max(0,Math.min(4,i-e))]}}c.prototype.recalculateStyleLayers=function(){for(var t=0;t<this.childLayers.length;t++)this.childLayers[t].recalculate(this.zoom,u)},c.prototype.populatePaintArrays=function(t,e,r,n,i){for(var a=0;a<this.childLayers.length;a++)for(var o=this.childLayers[a],s=this.arrayGroups[t],l=n.index;l<s.length;l++){var c=s[l],u=c.layoutVertexArray.length,f=c.paintVertexArrays[o.id];f.resize(u);for(var h=this.paintAttributes[t][o.id].attributes,d=0;d<h.length;d++)for(var p=h[d],m=p.getValue(o,e,r),v=p.multiplier||1,g=p.components||1,y=l===n.index?i:0;y<u;y++)for(var b=f.get(y),x=0;x<g;x++){b[g>1?p.name+x:p.name]=m[x]*v}}},c.VertexArrayType=function(t){return new s({members:t,alignment:4})},c.ElementArrayType=function(t){return new s({members:[{type:"Uint16",name:"vertices",components:t||3}]})}},{"../util/struct_array":412,"../util/util":414,"./array_group":300,"./bucket/circle_bucket":302,"./bucket/fill_bucket":303,"./bucket/line_bucket":304,"./bucket/symbol_bucket":305,"./buffer_group":307,assert:51,"feature-filter":141}],302:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT;function s(){n.apply(this,arguments)}e.exports=s,s.prototype=i.inherit(n,{}),s.prototype.addCircleVertex=function(t,e,r,n,i){return t.emplaceBack(2*e+(n+1)/2,2*r+(i+1)/2)},s.prototype.programInterfaces={circle:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType,paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("circle-color",e,r)},multiplier:255,paintProperty:"circle-color"},{name:"a_radius",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-radius",e,r)]},multiplier:10,paintProperty:"circle-radius"},{name:"a_blur",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-blur",e,r)]},multiplier:10,paintProperty:"circle-blur"},{name:"a_opacity",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-opacity",e,r)]},multiplier:255,paintProperty:"circle-opacity"}]}},s.prototype.addFeature=function(t){for(var e={zoom:this.zoom},r=a(t),n=this.prepareArrayGroup("circle",0),i=n.layoutVertexArray.length,s=0;s<r.length;s++)for(var l=0;l<r[s].length;l++){var c=r[s][l].x,u=r[s][l].y;if(!(c<0||c>=o||u<0||u>=o)){var f=this.prepareArrayGroup("circle",4),h=f.layoutVertexArray,d=this.addCircleVertex(h,c,u,-1,-1);this.addCircleVertex(h,c,u,1,-1),this.addCircleVertex(h,c,u,1,1),this.addCircleVertex(h,c,u,-1,1),f.elementArray.emplaceBack(d,d+1,d+2),f.elementArray.emplaceBack(d,d+3,d+2)}}this.populatePaintArrays("circle",e,t.properties,n,i)}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],303:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=t("earcut"),s=t("../../util/classify_rings");function l(){n.apply(this,arguments)}e.exports=l,l.prototype=i.inherit(n,{}),l.prototype.programInterfaces={fill:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType(1),elementArrayType2:new n.ElementArrayType(2),paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-color",e,r)},multiplier:255,paintProperty:"fill-color"},{name:"a_outline_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-outline-color",e,r)},multiplier:255,paintProperty:"fill-outline-color"},{name:"a_opacity",components:1,type:"Uint8",getValue:function(t,e,r){return[t.getPaintValue("fill-opacity",e,r)]},multiplier:255,paintProperty:"fill-opacity"}]}},l.prototype.addFeature=function(t){for(var e=a(t),r=s(e,500),n=this.prepareArrayGroup("fill",0),i=n.layoutVertexArray.length,o=0;o<r.length;o++)this.addPolygon(r[o]);this.populatePaintArrays("fill",{zoom:this.zoom},t.properties,n,i)},l.prototype.addPolygon=function(t){for(var e=0,r=0;r<t.length;r++)e+=t[r].length;for(var n=this.prepareArrayGroup("fill",e),i=[],a=[],s=n.layoutVertexArray.length,l=0;l<t.length;l++){var c=t[l];l>0&&a.push(i.length/2);for(var u=0;u<c.length;u++){var f=c[u],h=n.layoutVertexArray.emplaceBack(f.x,f.y);u>=1&&n.elementArray2.emplaceBack(h-1,h),i.push(f.x),i.push(f.y)}}for(var d=o(i,a),p=0;p<d.length;p++)n.elementArray.emplaceBack(d[p]+s)}},{"../../util/classify_rings":402,"../../util/util":414,"../bucket":301,"../load_geometry":309,earcut:135}],304:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT,s=Math.cos(Math.PI/180*37.5),l=Math.pow(2,14)/.5;function c(){n.apply(this,arguments)}e.exports=c,c.prototype=i.inherit(n,{}),c.prototype.addLineVertex=function(t,e,r,n,i,a,o){return t.emplaceBack(e.x<<1|n,e.y<<1|i,Math.round(63*r.x)+128,Math.round(63*r.y)+128,1+(0===a?0:a<0?-1:1)|(.5*o&63)<<2,.5*o>>6)},c.prototype.programInterfaces={line:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_data",components:4,type:"Uint8"}]),elementArrayType:new n.ElementArrayType}},c.prototype.addFeature=function(t){for(var e=a(t,15),r=0;r<e.length;r++)this.addLine(e[r],this.layer.layout["line-join"],this.layer.layout["line-cap"],this.layer.layout["line-miter-limit"],this.layer.layout["line-round-limit"])},c.prototype.addLine=function(t,e,r,n,i){for(var a=t.length;a>2&&t[a-1].equals(t[a-2]);)a--;if(!(t.length<2)){"bevel"===e&&(n=1.05);var l=o/(512*this.overscaling)*15,c=t[0],u=t[a-1],f=c.equals(u);if(this.prepareArrayGroup("line",10*a),2!==a||!f){this.distance=0;var h,d,p,m,v,g,y,b=r,x=f?"butt":r,_=!0;this.e1=this.e2=this.e3=-1,f&&(h=t[a-2],v=c.sub(h)._unit()._perp());for(var w=0;w<a;w++)if(!(p=f&&w===a-1?t[1]:t[w+1])||!t[w].equals(p)){v&&(m=v),h&&(d=h),h=t[w],v=p?p.sub(h)._unit()._perp():m;var M=(m=m||v).add(v)._unit(),k=M.x*v.x+M.y*v.y,A=1/k,T=k<s&&d&&p;if(T&&w>0){var E=h.dist(d);if(E>2*l){var S=h.sub(h.sub(d)._mult(l/E)._round());this.distance+=S.dist(d),this.addCurrentVertex(S,this.distance,m.mult(1),0,0,!1),d=S}}var L=d&&p,C=L?e:p?b:x;if(L&&"round"===C&&(A<i?C="miter":A<=2&&(C="fakeround")),"miter"===C&&A>n&&(C="bevel"),"bevel"===C&&(A>2&&(C="flipbevel"),A<n&&(C="miter")),d&&(this.distance+=h.dist(d)),"miter"===C)M._mult(A),this.addCurrentVertex(h,this.distance,M,0,0,!1);else if("flipbevel"===C){if(A>100)M=v.clone();else{var P=m.x*v.y-m.y*v.x>0?-1:1,z=A*m.add(v).mag()/m.sub(v).mag();M._perp()._mult(z*P)}this.addCurrentVertex(h,this.distance,M,0,0,!1),this.addCurrentVertex(h,this.distance,M.mult(-1),0,0,!1)}else if("bevel"===C||"fakeround"===C){var O=m.x*v.y-m.y*v.x>0,D=-Math.sqrt(A*A-1);if(O?(y=0,g=D):(g=0,y=D),_||this.addCurrentVertex(h,this.distance,m,g,y,!1),"fakeround"===C){for(var I,R=Math.floor(8*(.5-(k-.5))),N=0;N<R;N++)I=v.mult((N+1)/(R+1))._add(m)._unit(),this.addPieSliceVertex(h,this.distance,I,O);this.addPieSliceVertex(h,this.distance,M,O);for(var F=R-1;F>=0;F--)I=m.mult((F+1)/(R+1))._add(v)._unit(),this.addPieSliceVertex(h,this.distance,I,O)}p&&this.addCurrentVertex(h,this.distance,v,-g,-y,!1)}else"butt"===C?(_||this.addCurrentVertex(h,this.distance,m,0,0,!1),p&&this.addCurrentVertex(h,this.distance,v,0,0,!1)):"square"===C?(_||(this.addCurrentVertex(h,this.distance,m,1,1,!1),this.e1=this.e2=-1),p&&this.addCurrentVertex(h,this.distance,v,-1,-1,!1)):"round"===C&&(_||(this.addCurrentVertex(h,this.distance,m,0,0,!1),this.addCurrentVertex(h,this.distance,m,1,1,!0),this.e1=this.e2=-1),p&&(this.addCurrentVertex(h,this.distance,v,-1,-1,!0),this.addCurrentVertex(h,this.distance,v,0,0,!1)));if(T&&w<a-1){var j=h.dist(p);if(j>2*l){var B=h.add(p.sub(h)._mult(l/j)._round());this.distance+=B.dist(h),this.addCurrentVertex(B,this.distance,v.mult(1),0,0,!1),h=B}}_=!1}}}},c.prototype.addCurrentVertex=function(t,e,r,n,i,a){var o,s=a?1:0,c=this.arrayGroups.line[this.arrayGroups.line.length-1],u=c.layoutVertexArray,f=c.elementArray;o=r.clone(),n&&o._sub(r.perp()._mult(n)),this.e3=this.addLineVertex(u,t,o,s,0,n,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,o=r.mult(-1),i&&o._sub(r.perp()._mult(i)),this.e3=this.addLineVertex(u,t,o,s,1,-i,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,e>l/2&&(this.distance=0,this.addCurrentVertex(t,this.distance,r,n,i,a))},c.prototype.addPieSliceVertex=function(t,e,r,n){var i=n?1:0;r=r.mult(n?-1:1);var a=this.arrayGroups.line[this.arrayGroups.line.length-1],o=a.layoutVertexArray,s=a.elementArray;this.e3=this.addLineVertex(o,t,r,0,i,0,e),this.e1>=0&&this.e2>=0&&s.emplaceBack(this.e1,this.e2,this.e3),n?this.e2=this.e3:this.e1=this.e3}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],305:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../bucket"),a=t("../../symbol/anchor"),o=t("../../symbol/get_anchors"),s=t("../../util/token"),l=t("../../symbol/quads"),c=t("../../symbol/shaping"),u=t("../../symbol/resolve_text"),f=t("../../symbol/mergelines"),h=t("../../symbol/clip_line"),d=t("../../util/util"),p=t("../load_geometry"),m=t("../../symbol/collision_feature"),v=c.shapeText,g=c.shapeIcon,y=l.getGlyphQuads,b=l.getIconQuads,x=i.EXTENT;function _(t){i.apply(this,arguments),this.showCollisionBoxes=t.showCollisionBoxes,this.overscaling=t.overscaling,this.collisionBoxArray=t.collisionBoxArray,this.symbolQuadsArray=t.symbolQuadsArray,this.symbolInstancesArray=t.symbolInstancesArray,this.sdfIcons=t.sdfIcons,this.iconsNeedLinear=t.iconsNeedLinear,this.adjustedTextSize=t.adjustedTextSize,this.adjustedIconSize=t.adjustedIconSize,this.fontstack=t.fontstack}e.exports=_,_.MAX_QUADS=65535,_.prototype=d.inherit(i,{}),_.prototype.serialize=function(){var t=i.prototype.serialize.apply(this);return t.sdfIcons=this.sdfIcons,t.iconsNeedLinear=this.iconsNeedLinear,t.adjustedTextSize=this.adjustedTextSize,t.adjustedIconSize=this.adjustedIconSize,t.fontstack=this.fontstack,t};var w=new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_offset",components:2,type:"Int16"},{name:"a_texture_pos",components:2,type:"Uint16"},{name:"a_data",components:4,type:"Uint8"}]),M=new i.ElementArrayType;function k(t,e,r,n,i,a,o,s,l,c,u){return t.emplaceBack(e,r,Math.round(64*n),Math.round(64*i),a/4,o/4,10*(c||0),u,10*(s||0),10*Math.min(l||25,25))}_.prototype.addCollisionBoxVertex=function(t,e,r,n,i){return t.emplaceBack(e.x,e.y,Math.round(r.x),Math.round(r.y),10*n,10*i)},_.prototype.programInterfaces={glyph:{layoutVertexArrayType:w,elementArrayType:M},icon:{layoutVertexArrayType:w,elementArrayType:M},collisionBox:{layoutVertexArrayType:new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_extrude",components:2,type:"Int16"},{name:"a_data",components:2,type:"Uint8"}])}},_.prototype.populateArrays=function(t,e,r){var n={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};this.adjustedTextMaxSize=this.layer.getLayoutValue("text-size",{zoom:18,zoomHistory:n}),this.adjustedTextSize=this.layer.getLayoutValue("text-size",{zoom:this.zoom+1,zoomHistory:n}),this.adjustedIconMaxSize=this.layer.getLayoutValue("icon-size",{zoom:18,zoomHistory:n}),this.adjustedIconSize=this.layer.getLayoutValue("icon-size",{zoom:this.zoom+1,zoomHistory:n});var i=512*this.overscaling;this.tilePixelRatio=x/i,this.compareText={},this.iconsNeedLinear=!1,this.symbolInstancesStartIndex=this.symbolInstancesArray.length;var a=this.layer.layout,o=this.features,l=this.textFeatures,c=.5,u=.5;switch(a["text-anchor"]){case"right":case"top-right":case"bottom-right":c=1;break;case"left":case"top-left":case"bottom-left":c=0}switch(a["text-anchor"]){case"bottom":case"bottom-right":case"bottom-left":u=1;break;case"top":case"top-right":case"top-left":u=0}for(var h,m,y="right"===a["text-justify"]?1:"left"===a["text-justify"]?0:.5,b=24*a["text-line-height"],_="line"!==a["symbol-placement"]?24*a["text-max-width"]:0,w=24*a["text-letter-spacing"],M=[24*a["text-offset"][0],24*a["text-offset"][1]],k=this.fontstack=a["text-font"].join(","),A=[],T=0;T<o.length;T++)A.push(p(o[T]));if("line"===a["symbol-placement"]){var E=f(o,l,A);A=E.geometries,o=E.features,l=E.textFeatures}for(var S=0;S<o.length;S++)if(A[S]){if(h=l[S]?v(l[S],e[k],_,b,c,u,y,w,M):null,a["icon-image"]){var L=r[s(o[S].properties,a["icon-image"])];m=g(L,a),L&&(void 0===this.sdfIcons?this.sdfIcons=L.sdf:this.sdfIcons!==L.sdf&&d.warnOnce("Style sheet warning: Cannot mix SDF and non-SDF icons in one buffer"),1!==L.pixelRatio?this.iconsNeedLinear=!0:0===a["icon-rotate"]&&this.layer.isLayoutValueFeatureConstant("icon-rotate")||(this.iconsNeedLinear=!0))}else m=null;(h||m)&&this.addFeature(A[S],h,m,o[S])}this.symbolInstancesEndIndex=this.symbolInstancesArray.length,this.placeFeatures(t,this.showCollisionBoxes),this.trimArrays()},_.prototype.addFeature=function(t,e,r,n){var i=this.layer.layout,s=this.adjustedTextSize/24,l=void 0!==this.adjustedTextMaxSize?this.adjustedTextMaxSize:this.adjustedTextSize,c=this.tilePixelRatio*s,u=this.tilePixelRatio*l/24,f=this.tilePixelRatio*this.adjustedIconSize,d=this.tilePixelRatio*i["symbol-spacing"],p=i["symbol-avoid-edges"],m=i["text-padding"]*this.tilePixelRatio,v=i["icon-padding"]*this.tilePixelRatio,g=i["text-max-angle"]/180*Math.PI,y="map"===i["text-rotation-alignment"]&&"line"===i["symbol-placement"],b="map"===i["icon-rotation-alignment"]&&"line"===i["symbol-placement"],_=i["text-allow-overlap"]||i["icon-allow-overlap"]||i["text-ignore-placement"]||i["icon-ignore-placement"],w="line"===i["symbol-placement"],M=d/2;w&&(t=h(t,0,0,x,x));for(var k=0;k<t.length;k++)for(var A,T=t[k],E=0,S=(A=w?o(T,d,g,e,r,24,u,this.overscaling,x):[new a(T[0].x,T[0].y,0)]).length;E<S;E++){var L=A[E];if(!(e&&w&&this.anchorIsTooClose(e.text,M,L))){var C=!(L.x<0||L.x>x||L.y<0||L.y>x);if(!p||C){var P=C||_;this.addSymbolInstance(L,T,e,r,this.layer,P,this.symbolInstancesArray.length,this.collisionBoxArray,n.index,this.sourceLayerIndex,this.index,c,m,y,f,v,b,{zoom:this.zoom},n.properties)}}}},_.prototype.anchorIsTooClose=function(t,e,r){var n=this.compareText;if(t in n){for(var i=n[t],a=i.length-1;a>=0;a--)if(r.dist(i[a])<e)return!0}else n[t]=[];return n[t].push(r),!1},_.prototype.placeFeatures=function(t,e){this.recalculateStyleLayers(),this.createArrays();var r=this.layer.layout,n=t.maxScale,i="map"===r["text-rotation-alignment"]&&"line"===r["symbol-placement"],a="map"===r["icon-rotation-alignment"]&&"line"===r["symbol-placement"];if(r["text-allow-overlap"]||r["icon-allow-overlap"]||r["text-ignore-placement"]||r["icon-ignore-placement"]){var o=this.symbolInstancesArray.toArray(this.symbolInstancesStartIndex,this.symbolInstancesEndIndex),s=t.angle,l=Math.sin(s),c=Math.cos(s);this.sortedSymbolInstances=o.sort(function(t,e){return(l*t.anchorPointX+c*t.anchorPointY|0)-(l*e.anchorPointX+c*e.anchorPointY|0)||e.index-t.index})}for(var u=this.symbolInstancesStartIndex;u<this.symbolInstancesEndIndex;u++){var f=this.sortedSymbolInstances?this.sortedSymbolInstances[u-this.symbolInstancesStartIndex]:this.symbolInstancesArray.get(u),h={boxStartIndex:f.textBoxStartIndex,boxEndIndex:f.textBoxEndIndex},d={boxStartIndex:f.iconBoxStartIndex,boxEndIndex:f.iconBoxEndIndex},p=!(f.textBoxStartIndex===f.textBoxEndIndex),m=!(f.iconBoxStartIndex===f.iconBoxEndIndex),v=r["text-optional"]||!p,g=r["icon-optional"]||!m,y=p?t.placeCollisionFeature(h,r["text-allow-overlap"],r["symbol-avoid-edges"]):t.minScale,b=m?t.placeCollisionFeature(d,r["icon-allow-overlap"],r["symbol-avoid-edges"]):t.minScale;v||g?!g&&y?y=Math.max(b,y):!v&&b&&(b=Math.max(b,y)):b=y=Math.max(b,y),p&&(t.insertCollisionFeature(h,y,r["text-ignore-placement"]),y<=n&&this.addSymbols("glyph",f.glyphQuadStartIndex,f.glyphQuadEndIndex,y,r["text-keep-upright"],i,t.angle)),m&&(t.insertCollisionFeature(d,b,r["icon-ignore-placement"]),b<=n&&this.addSymbols("icon",f.iconQuadStartIndex,f.iconQuadEndIndex,b,r["icon-keep-upright"],a,t.angle))}e&&this.addToDebugBuffers(t)},_.prototype.addSymbols=function(t,e,r,n,i,a,o){for(var s=this.prepareArrayGroup(t,4*(r-e)),l=s.elementArray,c=s.layoutVertexArray,u=this.zoom,f=Math.max(Math.log(n)/Math.LN2+u,0),h=e;h<r;h++){var d=this.symbolQuadsArray.get(h).SymbolQuad,p=(d.anchorAngle+o+Math.PI)%(2*Math.PI);if(!(i&&a&&(p<=Math.PI/2||p>3*Math.PI/2))){var m=d.tl,v=d.tr,g=d.bl,y=d.br,b=d.tex,x=d.anchorPoint,_=Math.max(u+Math.log(d.minScale)/Math.LN2,f),w=Math.min(u+Math.log(d.maxScale)/Math.LN2,25);if(!(w<=_)){_===f&&(_=0);var M=Math.round(d.glyphAngle/(2*Math.PI)*256),A=k(c,x.x,x.y,m.x,m.y,b.x,b.y,_,w,f,M);k(c,x.x,x.y,v.x,v.y,b.x+b.w,b.y,_,w,f,M),k(c,x.x,x.y,g.x,g.y,b.x,b.y+b.h,_,w,f,M),k(c,x.x,x.y,y.x,y.y,b.x+b.w,b.y+b.h,_,w,f,M),l.emplaceBack(A,A+1,A+2),l.emplaceBack(A+1,A+2,A+3)}}}},_.prototype.updateIcons=function(t){this.recalculateStyleLayers();var e=this.layer.layout["icon-image"];if(e)for(var r=0;r<this.features.length;r++){var n=s(this.features[r].properties,e);n&&(t[n]=!0)}},_.prototype.updateFont=function(t){this.recalculateStyleLayers();var e=this.layer.layout["text-font"],r=t[e]=t[e]||{};this.textFeatures=u(this.features,this.layer.layout,r)},_.prototype.addToDebugBuffers=function(t){for(var e=this.prepareArrayGroup("collisionBox",0).layoutVertexArray,r=-t.angle,i=t.yStretch,a=this.symbolInstancesStartIndex;a<this.symbolInstancesEndIndex;a++){var o=this.symbolInstancesArray.get(a);o.textCollisionFeature={boxStartIndex:o.textBoxStartIndex,boxEndIndex:o.textBoxEndIndex},o.iconCollisionFeature={boxStartIndex:o.iconBoxStartIndex,boxEndIndex:o.iconBoxEndIndex};for(var s=0;s<2;s++){var l=o[0===s?"textCollisionFeature":"iconCollisionFeature"];if(l)for(var c=l.boxStartIndex;c<l.boxEndIndex;c++){var u=this.collisionBoxArray.get(c),f=u.anchorPoint,h=new n(u.x1,u.y1*i)._rotate(r),d=new n(u.x2,u.y1*i)._rotate(r),p=new n(u.x1,u.y2*i)._rotate(r),m=new n(u.x2,u.y2*i)._rotate(r),v=Math.max(0,Math.min(25,this.zoom+Math.log(u.maxScale)/Math.LN2)),g=Math.max(0,Math.min(25,this.zoom+Math.log(u.placementScale)/Math.LN2));this.addCollisionBoxVertex(e,f,h,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,h,v,g)}}}},_.prototype.addSymbolInstance=function(t,e,r,n,i,a,o,s,l,c,u,f,h,p,v,g,x,w,M){var k,A,T,E,S,L,C,P;if(r&&(C=a?y(t,r,f,e,i,p):[],S=new m(s,e,t,l,c,u,r,f,h,p,!1)),k=this.symbolQuadsArray.length,C&&C.length)for(var z=0;z<C.length;z++)this.addSymbolQuad(C[z]);A=this.symbolQuadsArray.length;var O=S?S.boxStartIndex:this.collisionBoxArray.length,D=S?S.boxEndIndex:this.collisionBoxArray.length;n&&(P=a?b(t,n,v,e,i,x,r,w,M):[],L=new m(s,e,t,l,c,u,n,v,g,x,!0)),T=this.symbolQuadsArray.length,P&&1===P.length&&this.addSymbolQuad(P[0]),E=this.symbolQuadsArray.length;var I=L?L.boxStartIndex:this.collisionBoxArray.length,R=L?L.boxEndIndex:this.collisionBoxArray.length;return E>_.MAX_QUADS&&d.warnOnce("Too many symbols being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),A>_.MAX_QUADS&&d.warnOnce("Too many glyphs being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),this.symbolInstancesArray.emplaceBack(O,D,I,R,k,A,T,E,t.x,t.y,o)},_.prototype.addSymbolQuad=function(t){return this.symbolQuadsArray.emplaceBack(t.anchorPoint.x,t.anchorPoint.y,t.tl.x,t.tl.y,t.tr.x,t.tr.y,t.bl.x,t.bl.y,t.br.x,t.br.y,t.tex.h,t.tex.w,t.tex.x,t.tex.y,t.anchorAngle,t.glyphAngle,t.maxScale,t.minScale)}},{"../../symbol/anchor":363,"../../symbol/clip_line":365,"../../symbol/collision_feature":367,"../../symbol/get_anchors":369,"../../symbol/mergelines":372,"../../symbol/quads":373,"../../symbol/resolve_text":374,"../../symbol/shaping":375,"../../util/token":413,"../../util/util":414,"../bucket":301,"../load_geometry":309,"point-geometry":458}],306:[function(t,e,r){"use strict";function n(t,e,r){this.arrayBuffer=t.arrayBuffer,this.length=t.length,this.attributes=e.members,this.itemSize=e.bytesPerElement,this.type=r,this.arrayType=e}e.exports=n,n.prototype.bind=function(t){var e=t[this.type];this.buffer?t.bindBuffer(e,this.buffer):(this.buffer=t.createBuffer(),t.bindBuffer(e,this.buffer),t.bufferData(e,this.arrayBuffer,t.STATIC_DRAW),this.arrayBuffer=null)};var i={Int8:"BYTE",Uint8:"UNSIGNED_BYTE",Int16:"SHORT",Uint16:"UNSIGNED_SHORT"};n.prototype.setVertexAttribPointers=function(t,e){for(var r=0;r<this.attributes.length;r++){var n=this.attributes[r],a=e[n.name];void 0!==a&&t.vertexAttribPointer(a,n.components,t[i[n.type]],!1,this.arrayType.bytesPerElement,n.offset)}},n.prototype.destroy=function(t){this.buffer&&t.deleteBuffer(this.buffer)},n.BufferType={VERTEX:"ARRAY_BUFFER",ELEMENT:"ELEMENT_ARRAY_BUFFER"}},{}],307:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./buffer"),a=t("../render/vertex_array_object");function o(t,e){this.layoutVertexBuffer=new i(t.layoutVertexArray,e.layoutVertexArrayType,i.BufferType.VERTEX),t.elementArray&&(this.elementBuffer=new i(t.elementArray,e.elementArrayType,i.BufferType.ELEMENT));var r,o=this.vaos={};t.elementArray2&&(this.elementBuffer2=new i(t.elementArray2,e.elementArrayType2,i.BufferType.ELEMENT),r=this.secondVaos={}),this.paintVertexBuffers=n.mapObject(t.paintVertexArrays,function(n,s){return o[s]=new a,t.elementArray2&&(r[s]=new a),new i(n,e.paintVertexArrayTypes[s],i.BufferType.VERTEX)})}e.exports=o,o.prototype.destroy=function(t){for(var e in this.layoutVertexBuffer.destroy(t),this.elementBuffer&&this.elementBuffer.destroy(t),this.elementBuffer2&&this.elementBuffer2.destroy(t),this.paintVertexBuffers)this.paintVertexBuffers[e].destroy(t);for(var r in this.vaos)this.vaos[r].destroy(t);for(var n in this.secondVaos)this.secondVaos[n].destroy(t)}},{"../render/vertex_array_object":329,"../util/util":414,"./buffer":306}],308:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("./load_geometry"),a=t("./bucket").EXTENT,o=t("feature-filter"),s=t("../util/struct_array"),l=t("grid-index"),c=t("../util/dictionary_coder"),u=t("vector-tile"),f=t("pbf"),h=t("../util/vectortile_to_geojson"),d=t("../util/util").arraysIntersect,p=t("../util/intersection_tests"),m=p.multiPolygonIntersectsBufferedMultiPoint,v=p.multiPolygonIntersectsMultiPolygon,g=p.multiPolygonIntersectsBufferedMultiLine,y=new s({members:[{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"}]});function b(t,e,r){if(t.grid){var n=t,i=e;t=n.coord,e=n.overscaling,this.grid=new l(n.grid),this.featureIndexArray=new y(n.featureIndexArray),this.rawTileData=i,this.bucketLayerIDs=n.bucketLayerIDs}else this.grid=new l(a,16,0),this.featureIndexArray=new y;this.coord=t,this.overscaling=e,this.x=t.x,this.y=t.y,this.z=t.z-Math.log(e)/Math.LN2,this.setCollisionTile(r)}function x(t){return Math.sqrt(t[0]*t[0]+t[1]*t[1])}function _(t,e){return e-t}function w(t){return t["line-gap-width"]>0?t["line-gap-width"]+2*t["line-width"]:t["line-width"]}function M(t,e,r,i,a){if(!e[0]&&!e[1])return t;e=n.convert(e),"viewport"===r&&e._rotate(-i);for(var o=[],s=0;s<t.length;s++){for(var l=t[s],c=[],u=0;u<l.length;u++)c.push(l[u].sub(e._mult(a)));o.push(c)}return o}function k(t,e){for(var r=[],i=new n(0,0),a=0;a<t.length;a++){for(var o=t[a],s=[],l=0;l<o.length;l++){var c=o[l-1],u=o[l],f=o[l+1],h=0===l?i:u.sub(c)._unit()._perp(),d=l===o.length-1?i:f.sub(u)._unit()._perp(),p=h._add(d)._unit(),m=p.x*d.x+p.y*d.y;p._mult(1/m),s.push(p._mult(e)._add(u))}r.push(s)}return r}e.exports=b,b.prototype.insert=function(t,e,r,n){var a=this.featureIndexArray.length;this.featureIndexArray.emplaceBack(e,r,n);for(var o=i(t),s=0;s<o.length;s++){for(var l=o[s],c=[1/0,1/0,-1/0,-1/0],u=0;u<l.length;u++){var f=l[u];c[0]=Math.min(c[0],f.x),c[1]=Math.min(c[1],f.y),c[2]=Math.max(c[2],f.x),c[3]=Math.max(c[3],f.y)}this.grid.insert(a,c[0],c[1],c[2],c[3])}},b.prototype.setCollisionTile=function(t){this.collisionTile=t},b.prototype.serialize=function(){var t={coord:this.coord,overscaling:this.overscaling,grid:this.grid.toArrayBuffer(),featureIndexArray:this.featureIndexArray.serialize(),bucketLayerIDs:this.bucketLayerIDs};return{data:t,transferables:[t.grid,t.featureIndexArray.arrayBuffer]}},b.prototype.query=function(t,e){this.vtLayers||(this.vtLayers=new u.VectorTile(new f(new Uint8Array(this.rawTileData))).layers,this.sourceLayerCoder=new c(this.vtLayers?Object.keys(this.vtLayers).sort():["_geojsonTileLayer"]));var r={},i=t.params||{},s=a/t.tileSize/t.scale,l=o(i.filter),h=0;for(var d in e){var p=e[d],m=p.paint,v=0;"line"===p.type?v=w(m)/2+Math.abs(m["line-offset"])+x(m["line-translate"]):"fill"===p.type?v=x(m["fill-translate"]):"circle"===p.type&&(v=m["circle-radius"]+x(m["circle-translate"])),h=Math.max(h,v*s)}for(var g=t.queryGeometry.map(function(t){return t.map(function(t){return new n(t.x,t.y)})}),y=1/0,b=1/0,M=-1/0,k=-1/0,A=0;A<g.length;A++)for(var T=g[A],E=0;E<T.length;E++){var S=T[E];y=Math.min(y,S.x),b=Math.min(b,S.y),M=Math.max(M,S.x),k=Math.max(k,S.y)}var L=this.grid.query(y-h,b-h,M+h,k+h);L.sort(_),this.filterMatching(r,L,this.featureIndexArray,g,l,i.layers,e,t.bearing,s);var C=this.collisionTile.queryRenderedSymbols(y,b,M,k,t.scale);return C.sort(),this.filterMatching(r,C,this.collisionTile.collisionBoxArray,g,l,i.layers,e,t.bearing,s),r},b.prototype.filterMatching=function(t,e,r,n,a,o,s,l,c){for(var u,f=0;f<e.length;f++){var p=e[f];if(p!==u){u=p;var y=r.get(p),b=this.bucketLayerIDs[y.bucketIndex];if(!o||d(o,b)){var x=this.sourceLayerCoder.decode(y.sourceLayerIndex),_=this.vtLayers[x].feature(y.featureIndex);if(a(_))for(var A=null,T=0;T<b.length;T++){var E=b[T];if(!(o&&o.indexOf(E)<0)){var S=s[E];if(S){var L;if("symbol"!==S.type){A||(A=i(_));var C=S.paint;if("line"===S.type){L=M(n,C["line-translate"],C["line-translate-anchor"],l,c);var P=w(C)/2*c;if(C["line-offset"]&&(A=k(A,C["line-offset"]*c)),!g(L,A,P))continue}else if("fill"===S.type){if(L=M(n,C["fill-translate"],C["fill-translate-anchor"],l,c),!v(L,A))continue}else if("circle"===S.type){L=M(n,C["circle-translate"],C["circle-translate-anchor"],l,c);var z=C["circle-radius"]*c;if(!m(L,A,z))continue}}var O=new h(_,this.z,this.x,this.y);O.layer=S.serialize({includeRefProperties:!0});var D=t[E];void 0===D&&(D=t[E]=[]),D.push(O)}}}}}}}},{"../util/dictionary_coder":404,"../util/intersection_tests":409,"../util/struct_array":412,"../util/util":414,"../util/vectortile_to_geojson":415,"./bucket":301,"./load_geometry":309,"feature-filter":141,"grid-index":254,pbf:451,"point-geometry":458,"vector-tile":544}],309:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./bucket").EXTENT,a=t("assert");function o(t){return{min:-1*Math.pow(2,t-1),max:Math.pow(2,t-1)-1}}var s={15:o(15),16:o(16)};e.exports=function(t,e){var r=s[e||16];a(r);for(var o=i/t.extent,l=t.loadGeometry(),c=0;c<l.length;c++)for(var u=l[c],f=0;f<u.length;f++){var h=u[f];h.x=Math.round(h.x*o),h.y=Math.round(h.y*o),(h.x<r.min||h.x>r.max||h.y<r.min||h.y>r.max)&&n.warnOnce("Geometry exceeds allowed extent, reduce your vector tile buffer size")}return l}},{"../util/util":414,"./bucket":301,assert:51}],310:[function(t,e,r){"use strict";function n(t,e,r){this.column=t,this.row=e,this.zoom=r}e.exports=n,n.prototype={clone:function(){return new n(this.column,this.row,this.zoom)},zoomTo:function(t){return this.clone()._zoomTo(t)},sub:function(t){return this.clone()._sub(t)},_zoomTo:function(t){var e=Math.pow(2,t-this.zoom);return this.column*=e,this.row*=e,this.zoom=t,this},_sub:function(t){return t=t.zoomTo(this.zoom),this.column-=t.column,this.row-=t.row,this}}},{}],311:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util").wrap;function i(t,e){if(isNaN(t)||isNaN(e))throw new Error("Invalid LngLat object: ("+t+", "+e+")");if(this.lng=+t,this.lat=+e,this.lat>90||this.lat<-90)throw new Error("Invalid LngLat latitude value: must be between -90 and 90")}i.prototype.wrap=function(){return new i(n(this.lng,-180,180),this.lat)},i.prototype.toArray=function(){return[this.lng,this.lat]},i.prototype.toString=function(){return"LngLat("+this.lng+", "+this.lat+")"},i.convert=function(t){return t instanceof i?t:Array.isArray(t)?new i(t[0],t[1]):t}},{"../util/util":414}],312:[function(t,e,r){"use strict";e.exports=i;var n=t("./lng_lat");function i(t,e){t&&(e?this.extend(t).extend(e):4===t.length?this.extend([t[0],t[1]]).extend([t[2],t[3]]):this.extend(t[0]).extend(t[1]))}i.prototype={extend:function(t){var e,r,a=this._sw,o=this._ne;if(t instanceof n)e=t,r=t;else{if(!(t instanceof i))return t?this.extend(n.convert(t)||i.convert(t)):this;if(e=t._sw,r=t._ne,!e||!r)return this}return a||o?(a.lng=Math.min(e.lng,a.lng),a.lat=Math.min(e.lat,a.lat),o.lng=Math.max(r.lng,o.lng),o.lat=Math.max(r.lat,o.lat)):(this._sw=new n(e.lng,e.lat),this._ne=new n(r.lng,r.lat)),this},getCenter:function(){return new n((this._sw.lng+this._ne.lng)/2,(this._sw.lat+this._ne.lat)/2)},getSouthWest:function(){return this._sw},getNorthEast:function(){return this._ne},getNorthWest:function(){return new n(this.getWest(),this.getNorth())},getSouthEast:function(){return new n(this.getEast(),this.getSouth())},getWest:function(){return this._sw.lng},getSouth:function(){return this._sw.lat},getEast:function(){return this._ne.lng},getNorth:function(){return this._ne.lat},toArray:function(){return[this._sw.toArray(),this._ne.toArray()]},toString:function(){return"LngLatBounds("+this._sw.toString()+", "+this._ne.toString()+")"}},i.convert=function(t){return!t||t instanceof i?t:new i(t)}},{"./lng_lat":311}],313:[function(t,e,r){"use strict";var n=t("./lng_lat"),i=t("point-geometry"),a=t("./coordinate"),o=t("../util/util").wrap,s=t("../util/interpolate"),l=t("../source/tile_coord"),c=t("../data/bucket").EXTENT,u=t("gl-matrix"),f=u.vec4,h=u.mat4,d=u.mat2;function p(t,e){this.tileSize=512,this._minZoom=t||0,this._maxZoom=e||22,this.latRange=[-85.05113,85.05113],this.width=0,this.height=0,this._center=new n(0,0),this.zoom=0,this.angle=0,this._altitude=1.5,this._pitch=0,this._unmodified=!0}e.exports=p,p.prototype={get minZoom(){return this._minZoom},set minZoom(t){this._minZoom!==t&&(this._minZoom=t,this.zoom=Math.max(this.zoom,t))},get maxZoom(){return this._maxZoom},set maxZoom(t){this._maxZoom!==t&&(this._maxZoom=t,this.zoom=Math.min(this.zoom,t))},get worldSize(){return this.tileSize*this.scale},get centerPoint(){return this.size._div(2)},get size(){return new i(this.width,this.height)},get bearing(){return-this.angle/Math.PI*180},set bearing(t){var e=-o(t,-180,180)*Math.PI/180;this.angle!==e&&(this._unmodified=!1,this.angle=e,this._calcMatrices(),this.rotationMatrix=d.create(),d.rotate(this.rotationMatrix,this.rotationMatrix,this.angle))},get pitch(){return this._pitch/Math.PI*180},set pitch(t){var e=Math.min(60,t)/180*Math.PI;this._pitch!==e&&(this._unmodified=!1,this._pitch=e,this._calcMatrices())},get altitude(){return this._altitude},set altitude(t){var e=Math.max(.75,t);this._altitude!==e&&(this._unmodified=!1,this._altitude=e,this._calcMatrices())},get zoom(){return this._zoom},set zoom(t){var e=Math.min(Math.max(t,this.minZoom),this.maxZoom);this._zoom!==e&&(this._unmodified=!1,this._zoom=e,this.scale=this.zoomScale(e),this.tileZoom=Math.floor(e),this.zoomFraction=e-this.tileZoom,this._calcMatrices(),this._constrain())},get center(){return this._center},set center(t){t.lat===this._center.lat&&t.lng===this._center.lng||(this._unmodified=!1,this._center=t,this._calcMatrices(),this._constrain())},coveringZoomLevel:function(t){return(t.roundZoom?Math.round:Math.floor)(this.zoom+this.scaleZoom(this.tileSize/t.tileSize))},coveringTiles:function(t){var e=this.coveringZoomLevel(t),r=e;if(e<t.minzoom)return[];e>t.maxzoom&&(e=t.maxzoom);var n=this,a=n.locationCoordinate(n.center)._zoomTo(e),o=new i(a.column-.5,a.row-.5);return l.cover(e,[n.pointCoordinate(new i(0,0))._zoomTo(e),n.pointCoordinate(new i(n.width,0))._zoomTo(e),n.pointCoordinate(new i(n.width,n.height))._zoomTo(e),n.pointCoordinate(new i(0,n.height))._zoomTo(e)],t.reparseOverscaled?r:e).sort(function(t,e){return o.dist(t)-o.dist(e)})},resize:function(t,e){this.width=t,this.height=e,this.pixelsToGLUnits=[2/t,-2/e],this._calcMatrices(),this._constrain()},get unmodified(){return this._unmodified},zoomScale:function(t){return Math.pow(2,t)},scaleZoom:function(t){return Math.log(t)/Math.LN2},project:function(t,e){return new i(this.lngX(t.lng,e),this.latY(t.lat,e))},unproject:function(t,e){return new n(this.xLng(t.x,e),this.yLat(t.y,e))},get x(){return this.lngX(this.center.lng)},get y(){return this.latY(this.center.lat)},get point(){return new i(this.x,this.y)},lngX:function(t,e){return(180+t)*(e||this.worldSize)/360},latY:function(t,e){return(180-180/Math.PI*Math.log(Math.tan(Math.PI/4+t*Math.PI/360)))*(e||this.worldSize)/360},xLng:function(t,e){return 360*t/(e||this.worldSize)-180},yLat:function(t,e){var r=180-360*t/(e||this.worldSize);return 360/Math.PI*Math.atan(Math.exp(r*Math.PI/180))-90},panBy:function(t){var e=this.centerPoint._add(t);this.center=this.pointLocation(e)},setLocationAtPoint:function(t,e){var r=this.locationCoordinate(t),n=this.pointCoordinate(e),i=this.pointCoordinate(this.centerPoint),a=n._sub(r);this._unmodified=!1,this.center=this.coordinateLocation(i._sub(a))},locationPoint:function(t){return this.coordinatePoint(this.locationCoordinate(t))},pointLocation:function(t){return this.coordinateLocation(this.pointCoordinate(t))},locationCoordinate:function(t){var e=this.zoomScale(this.tileZoom)/this.worldSize,r=n.convert(t);return new a(this.lngX(r.lng)*e,this.latY(r.lat)*e,this.tileZoom)},coordinateLocation:function(t){var e=this.zoomScale(t.zoom);return new n(this.xLng(t.column,e),this.yLat(t.row,e))},pointCoordinate:function(t){var e=[t.x,t.y,0,1],r=[t.x,t.y,1,1];f.transformMat4(e,e,this.pixelMatrixInverse),f.transformMat4(r,r,this.pixelMatrixInverse);var n=e[3],i=r[3],o=e[0]/n,l=r[0]/i,c=e[1]/n,u=r[1]/i,h=e[2]/n,d=r[2]/i,p=h===d?0:(0-h)/(d-h),m=this.worldSize/this.zoomScale(this.tileZoom);return new a(s(o,l,p)/m,s(c,u,p)/m,this.tileZoom)},coordinatePoint:function(t){var e=this.worldSize/this.zoomScale(t.zoom),r=[t.column*e,t.row*e,0,1];return f.transformMat4(r,r,this.pixelMatrix),new i(r[0]/r[3],r[1]/r[3])},calculatePosMatrix:function(t,e){void 0===e&&(e=1/0),t instanceof l&&(t=t.toCoordinate(e));var r=Math.min(t.zoom,e),n=this.worldSize/Math.pow(2,r),i=new Float64Array(16);return h.identity(i),h.translate(i,i,[t.column*n,t.row*n,0]),h.scale(i,i,[n/c,n/c,1]),h.multiply(i,this.projMatrix,i),new Float32Array(i)},_constrain:function(){if(this.center&&this.width&&this.height&&!this._constraining){this._constraining=!0;var t,e,r,n,a,o,s,l,c=this.size,u=this._unmodified;this.latRange&&(t=this.latY(this.latRange[1]),a=(e=this.latY(this.latRange[0]))-t<c.y?c.y/(e-t):0),this.lngRange&&(r=this.lngX(this.lngRange[0]),o=(n=this.lngX(this.lngRange[1]))-r<c.x?c.x/(n-r):0);var f=Math.max(o||0,a||0);if(f)return this.center=this.unproject(new i(o?(n+r)/2:this.x,a?(e+t)/2:this.y)),this.zoom+=this.scaleZoom(f),this._unmodified=u,void(this._constraining=!1);if(this.latRange){var h=this.y,d=c.y/2;h-d<t&&(l=t+d),h+d>e&&(l=e-d)}if(this.lngRange){var p=this.x,m=c.x/2;p-m<r&&(s=r+m),p+m>n&&(s=n-m)}void 0===s&&void 0===l||(this.center=this.unproject(new i(void 0!==s?s:this.x,void 0!==l?l:this.y))),this._unmodified=u,this._constraining=!1}},_calcMatrices:function(){if(this.height){var t=Math.atan(.5/this.altitude),e=Math.sin(t)*this.altitude/Math.sin(Math.PI/2-this._pitch-t),r=Math.cos(Math.PI/2-this._pitch)*e+this.altitude,n=new Float64Array(16);if(h.perspective(n,2*Math.atan(this.height/2/this.altitude),this.width/this.height,.1,r),h.translate(n,n,[0,0,-this.altitude]),h.scale(n,n,[1,-1,1/this.height]),h.rotateX(n,n,this._pitch),h.rotateZ(n,n,this.angle),h.translate(n,n,[-this.x,-this.y,0]),this.projMatrix=n,n=h.create(),h.scale(n,n,[this.width/2,-this.height/2,1]),h.translate(n,n,[1,-1,0]),this.pixelMatrix=h.multiply(new Float64Array(16),n,this.projMatrix),!(n=h.invert(new Float64Array(16),this.pixelMatrix)))throw new Error("failed to invert matrix");this.pixelMatrixInverse=n}}}},{"../data/bucket":301,"../source/tile_coord":341,"../util/interpolate":408,"../util/util":414,"./coordinate":310,"./lng_lat":311,"gl-matrix":198,"point-geometry":458}],314:[function(t,e,r){"use strict";var n={" 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a,o,s,l,c,u,f,h,d=[];for(a=0,o=t.length;a<o;a++)if(c=n[t[a]]){for(h=null,s=0,l=c[1].length;s<l;s+=2)-1===c[1][s]&&-1===c[1][s+1]?h=null:(u=e+c[1][s]*i,f=r-c[1][s+1]*i,h&&d.push(h.x,h.y,u,f),h={x:u,y:f});e+=c[0]*i}return d}},{}],315:[function(t,e,r){"use strict";var n=e.exports={};n.version=t("../package.json").version,n.Map=t("./ui/map"),n.Control=t("./ui/control/control"),n.Navigation=t("./ui/control/navigation"),n.Geolocate=t("./ui/control/geolocate"),n.Attribution=t("./ui/control/attribution"),n.Popup=t("./ui/popup"),n.Marker=t("./ui/marker"),n.Style=t("./style/style"),n.LngLat=t("./geo/lng_lat"),n.LngLatBounds=t("./geo/lng_lat_bounds"),n.Point=t("point-geometry"),n.Evented=t("./util/evented"),n.util=t("./util/util"),n.supported=t("./util/browser").supported;var i=t("./util/ajax");n.util.getJSON=i.getJSON,n.util.getArrayBuffer=i.getArrayBuffer;var a=t("./util/config");n.config=a,Object.defineProperty(n,"accessToken",{get:function(){return a.ACCESS_TOKEN},set:function(t){a.ACCESS_TOKEN=t}})},{"../package.json":416,"./geo/lng_lat":311,"./geo/lng_lat_bounds":312,"./style/style":350,"./ui/control/attribution":381,"./ui/control/control":382,"./ui/control/geolocate":383,"./ui/control/navigation":384,"./ui/map":393,"./ui/marker":394,"./ui/popup":395,"./util/ajax":397,"./util/browser":398,"./util/config":403,"./util/evented":406,"./util/util":414,"point-geometry":458}],316:[function(t,e,r){"use strict";var n=t("assert");e.exports=function(t){for(var e={define:{},initialize:{}},r=0;r<t.length;r++){var i=t[r];n("u_"===i.name.slice(0,2));var a="{precision} "+(1===i.components?"float":"vec"+i.components);e.define[i.name.slice(2)]="uniform "+a+" "+i.name+";\n",e.initialize[i.name.slice(2)]=a+" "+i.name.slice(2)+" = "+i.name+";\n"}return e}},{assert:51}],317:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units"),i=t("./create_uniform_pragmas"),a=512;e.exports=function(t,e,r){var o,s=t.gl,l=t.transform,c=r.paint["background-color"],u=r.paint["background-pattern"],f=r.paint["background-opacity"],h=u?t.spriteAtlas.getPosition(u.from,!0):null,d=u?t.spriteAtlas.getPosition(u.to,!0):null;if(t.setDepthSublayer(0),h&&d){if(t.isOpaquePass)return;o=t.useProgram("pattern"),s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,h.tl),s.uniform2fv(o.u_pattern_br_a,h.br),s.uniform2fv(o.u_pattern_tl_b,d.tl),s.uniform2fv(o.u_pattern_br_b,d.br),s.uniform1f(o.u_opacity,f),s.uniform1f(o.u_mix,u.t),s.uniform2fv(o.u_pattern_size_a,h.size),s.uniform2fv(o.u_pattern_size_b,d.size),s.uniform1f(o.u_scale_a,u.fromScale),s.uniform1f(o.u_scale_b,u.toScale),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),t.tileExtentPatternVAO.bind(s,o,t.tileExtentBuffer)}else{if(t.isOpaquePass!==(1===c[3]))return;var p=i([{name:"u_color",components:4},{name:"u_opacity",components:1}]);o=t.useProgram("fill",[],p,p),s.uniform4fv(o.u_color,c),s.uniform1f(o.u_opacity,f),t.tileExtentVAO.bind(s,o,t.tileExtentBuffer)}s.disable(s.STENCIL_TEST);for(var m=l.coveringTiles({tileSize:a}),v=0;v<m.length;v++){var g=m[v];if(h&&d){var y={coord:g,tileSize:a};s.uniform1f(o.u_tile_units_to_pixels,1/n(y,1,t.transform.tileZoom));var b=y.tileSize*Math.pow(2,t.transform.tileZoom-y.coord.z),x=b*(y.coord.x+g.w*Math.pow(2,y.coord.z)),_=b*y.coord.y;s.uniform2f(o.u_pixel_coord_upper,x>>16,_>>16),s.uniform2f(o.u_pixel_coord_lower,65535&x,65535&_)}s.uniformMatrix4fv(o.u_matrix,!1,t.transform.calculatePosMatrix(g)),s.drawArrays(s.TRIANGLE_STRIP,0,t.tileExtentBuffer.length)}s.stencilMask(0),s.stencilFunc(s.EQUAL,128,128)}},{"../source/pixels_to_tile_units":335,"./create_uniform_pragmas":316}],318:[function(t,e,r){"use strict";var n=t("../util/browser");e.exports=function(t,e,r,i){if(t.isOpaquePass)return;var a=t.gl;t.setDepthSublayer(0),t.depthMask(!1),a.disable(a.STENCIL_TEST);for(var o=0;o<i.length;o++){var s=i[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.circle;if(u){var f=c.paintAttributes.circle[r.id],h=t.useProgram("circle",f.defines,f.vertexPragmas,f.fragmentPragmas);"map"===r.paint["circle-pitch-scale"]?(a.uniform1i(h.u_scale_with_map,!0),a.uniform2f(h.u_extrude_scale,t.transform.pixelsToGLUnits[0]*t.transform.altitude,t.transform.pixelsToGLUnits[1]*t.transform.altitude)):(a.uniform1i(h.u_scale_with_map,!1),a.uniform2fv(h.u_extrude_scale,t.transform.pixelsToGLUnits)),a.uniform1f(h.u_devicepixelratio,n.devicePixelRatio),a.uniformMatrix4fv(h.u_matrix,!1,t.translatePosMatrix(s.posMatrix,l,r.paint["circle-translate"],r.paint["circle-translate-anchor"])),c.setUniforms(a,"circle",h,r,{zoom:t.transform.zoom});for(var d=0;d<u.length;d++){var p=u[d];p.vaos[r.id].bind(a,h,p.layoutVertexBuffer,p.elementBuffer,p.paintVertexBuffers[r.id]),a.drawElements(a.TRIANGLES,3*p.elementBuffer.length,a.UNSIGNED_SHORT,0)}}}}}},{"../util/browser":398}],319:[function(t,e,r){"use strict";e.exports=function(t,e,r,n){var i=t.gl;i.enable(i.STENCIL_TEST);for(var a=t.useProgram("collisionbox"),o=0;o<n.length;o++){var s=n[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.collisionBox;if(u&&u.length){var f=u[0];0!==f.layoutVertexBuffer.length&&(i.uniformMatrix4fv(a.u_matrix,!1,s.posMatrix),t.enableTileClippingMask(s),t.lineWidth(1),i.uniform1f(a.u_scale,Math.pow(2,t.transform.zoom-l.coord.z)),i.uniform1f(a.u_zoom,10*t.transform.zoom),i.uniform1f(a.u_maxzoom,10*(l.coord.z+1)),f.vaos[r.id].bind(i,a,f.layoutVertexBuffer),i.drawArrays(i.LINES,0,f.layoutVertexBuffer.length))}}}}},{}],320:[function(t,e,r){"use strict";var n=t("../lib/debugtext"),i=t("../util/browser"),a=t("gl-matrix").mat4,o=t("../data/bucket").EXTENT,s=t("../data/buffer"),l=t("./vertex_array_object");function c(t,e,r){var c=t.gl;c.disable(c.STENCIL_TEST),t.lineWidth(1*i.devicePixelRatio);var u=r.posMatrix,f=t.useProgram("debug");c.uniformMatrix4fv(f.u_matrix,!1,u),c.uniform4f(f.u_color,1,0,0,1),t.debugVAO.bind(c,f,t.debugBuffer),c.drawArrays(c.LINE_STRIP,0,t.debugBuffer.length);for(var h=n(r.toString(),50,200,5),d=new t.PosArray,p=0;p<h.length;p+=2)d.emplaceBack(h[p],h[p+1]);var m=new s(d.serialize(),t.PosArray.serialize(),s.BufferType.VERTEX);(new l).bind(c,f,m),c.uniform4f(f.u_color,1,1,1,1);for(var v=e.getTile(r).tileSize,g=o/(Math.pow(2,t.transform.zoom-r.z)*v),y=[[-1,-1],[-1,1],[1,-1],[1,1]],b=0;b<y.length;b++){var x=y[b];c.uniformMatrix4fv(f.u_matrix,!1,a.translate([],u,[g*x[0],g*x[1],0])),c.drawArrays(c.LINES,0,m.length)}c.uniform4f(f.u_color,0,0,0,1),c.uniformMatrix4fv(f.u_matrix,!1,u),c.drawArrays(c.LINES,0,m.length)}e.exports=function(t,e,r){if(t.isOpaquePass)return;if(!t.options.debug)return;for(var n=0;n<r.length;n++)c(t,e,r[n])}},{"../data/bucket":301,"../data/buffer":306,"../lib/debugtext":314,"../util/browser":398,"./vertex_array_object":329,"gl-matrix":198}],321:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units");function i(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s=a.bufferGroups.fill;if(s){var l,c=t.gl,u=r.paint["fill-pattern"];if(u)l=t.useProgram("pattern"),o(u,r.paint["fill-opacity"],i,n,t,l),c.activeTexture(c.TEXTURE0),t.spriteAtlas.bind(c,!0);else{var f=a.paintAttributes.fill[r.id];l=t.useProgram("fill",f.defines,f.vertexPragmas,f.fragmentPragmas),a.setUniforms(c,"fill",l,r,{zoom:t.transform.zoom})}c.uniformMatrix4fv(l.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),t.enableTileClippingMask(n);for(var h=0;h<s.length;h++){var d=s[h];d.vaos[r.id].bind(c,l,d.layoutVertexBuffer,d.elementBuffer,d.paintVertexBuffers[r.id]),c.drawElements(c.TRIANGLES,d.elementBuffer.length,c.UNSIGNED_SHORT,0)}}}}function a(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s,l=t.gl,c=a.bufferGroups.fill,u=r.paint["fill-pattern"],f=r.paint["fill-opacity"],h=r.getPaintProperty("fill-outline-color");if(u&&!h)s=t.useProgram("outlinepattern"),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight);else{var d=a.paintAttributes.fill[r.id];s=t.useProgram("outline",d.defines,d.vertexPragmas,d.fragmentPragmas),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight),l.uniform1f(s.u_opacity,f),a.setUniforms(l,"fill",s,r,{zoom:t.transform.zoom})}l.uniformMatrix4fv(s.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),u&&o(u,f,i,n,t,s),t.enableTileClippingMask(n);for(var p=0;p<c.length;p++){var m=c[p];m.secondVaos[r.id].bind(l,s,m.layoutVertexBuffer,m.elementBuffer2,m.paintVertexBuffers[r.id]),l.drawElements(l.LINES,2*m.elementBuffer2.length,l.UNSIGNED_SHORT,0)}}}function o(t,e,r,i,a,o){var s=a.gl,l=a.spriteAtlas.getPosition(t.from,!0),c=a.spriteAtlas.getPosition(t.to,!0);if(l&&c){s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,l.tl),s.uniform2fv(o.u_pattern_br_a,l.br),s.uniform2fv(o.u_pattern_tl_b,c.tl),s.uniform2fv(o.u_pattern_br_b,c.br),s.uniform1f(o.u_opacity,e),s.uniform1f(o.u_mix,t.t),s.uniform1f(o.u_tile_units_to_pixels,1/n(r,1,a.transform.tileZoom)),s.uniform2fv(o.u_pattern_size_a,l.size),s.uniform2fv(o.u_pattern_size_b,c.size),s.uniform1f(o.u_scale_a,t.fromScale),s.uniform1f(o.u_scale_b,t.toScale);var u=r.tileSize*Math.pow(2,a.transform.tileZoom-r.coord.z),f=u*(r.coord.x+i.w*Math.pow(2,r.coord.z)),h=u*r.coord.y;s.uniform2f(o.u_pixel_coord_upper,f>>16,h>>16),s.uniform2f(o.u_pixel_coord_lower,65535&f,65535&h),s.activeTexture(s.TEXTURE0),a.spriteAtlas.bind(s,!0)}}e.exports=function(t,e,r,n){var o,s=t.gl;s.enable(s.STENCIL_TEST),o=!r.paint["fill-pattern"]&&(r.isPaintValueFeatureConstant("fill-color")&&r.isPaintValueFeatureConstant("fill-opacity")&&1===r.paint["fill-color"][3]&&1===r.paint["fill-opacity"]);if(t.isOpaquePass===o){t.setDepthSublayer(1);for(var l=0;l<n.length;l++)i(t,e,r,n[l])}if(!t.isOpaquePass&&r.paint["fill-antialias"]){t.lineWidth(2),t.depthMask(!1);var c=r.getPaintProperty("fill-outline-color");(c||!r.paint["fill-pattern"])&&c?t.setDepthSublayer(2):t.setDepthSublayer(0);for(var u=0;u<n.length;u++)a(t,e,r,n[u])}}},{"../source/pixels_to_tile_units":335}],322:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat2,a=t("../source/pixels_to_tile_units");e.exports=function(t,e,r,o){if(!t.isOpaquePass){t.setDepthSublayer(0),t.depthMask(!1);var s=t.gl;if(s.enable(s.STENCIL_TEST),!(r.paint["line-width"]<=0)){var l=1/n.devicePixelRatio,c=r.paint["line-blur"]+l,u=r.paint["line-color"],f=t.transform,h=i.create();i.scale(h,h,[1,Math.cos(f._pitch)]),i.rotate(h,h,t.transform.angle);var d,p,m,v,g,y=Math.sqrt(f.height*f.height/4*(1+f.altitude*f.altitude)),b=(y+f.height/2*Math.tan(f._pitch))/y-1,x=r.paint["line-dasharray"],_=r.paint["line-pattern"];if(x)d=t.useProgram("linesdfpattern"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),p=t.lineAtlas.getDash(x.from,"round"===r.layout["line-cap"]),m=t.lineAtlas.getDash(x.to,"round"===r.layout["line-cap"]),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.lineAtlas.bind(s),s.uniform1f(d.u_tex_y_a,p.y),s.uniform1f(d.u_tex_y_b,m.y),s.uniform1f(d.u_mix,x.t),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h);else if(_){if(v=t.spriteAtlas.getPosition(_.from,!0),g=t.spriteAtlas.getPosition(_.to,!0),!v||!g)return;d=t.useProgram("linepattern"),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform2fv(d.u_pattern_tl_a,v.tl),s.uniform2fv(d.u_pattern_br_a,v.br),s.uniform2fv(d.u_pattern_tl_b,g.tl),s.uniform2fv(d.u_pattern_br_b,g.br),s.uniform1f(d.u_fade,_.t),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h)}else d=t.useProgram("line"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]);for(var w=0;w<o.length;w++){var M=o[w],k=e.getTile(M),A=k.getBucket(r);if(A){var T=A.bufferGroups.line;if(T){t.enableTileClippingMask(M);var E=t.translatePosMatrix(M.posMatrix,k,r.paint["line-translate"],r.paint["line-translate-anchor"]);s.uniformMatrix4fv(d.u_matrix,!1,E);var S=1/a(k,1,t.transform.zoom);if(x){var L=p.width*x.fromScale,C=m.width*x.toScale,P=[1/a(k,L,t.transform.tileZoom),-p.height/2],z=[1/a(k,C,t.transform.tileZoom),-m.height/2],O=t.lineAtlas.width/(256*Math.min(L,C)*n.devicePixelRatio)/2;s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_patternscale_a,P),s.uniform2fv(d.u_patternscale_b,z),s.uniform1f(d.u_sdfgamma,O)}else _?(s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_pattern_size_a,[a(k,v.size[0]*_.fromScale,t.transform.tileZoom),g.size[1]]),s.uniform2fv(d.u_pattern_size_b,[a(k,g.size[0]*_.toScale,t.transform.tileZoom),g.size[1]])):s.uniform1f(d.u_ratio,S);for(var D=0;D<T.length;D++){var I=T[D];I.vaos[r.id].bind(s,d,I.layoutVertexBuffer,I.elementBuffer),s.drawElements(s.TRIANGLES,3*I.elementBuffer.length,s.UNSIGNED_SHORT,0)}}}}}}}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"gl-matrix":198}],323:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/struct_array");function a(t,e,r,n){if(!t.isOpaquePass){var i=t.gl;i.enable(i.DEPTH_TEST),t.depthMask(!0),i.depthFunc(i.LESS);for(var a=n.length&&n[0].z,s=0;s<n.length;s++){var l=n[s];t.setDepthSublayer(l.z-a),o(t,e,r,l)}i.depthFunc(i.LEQUAL)}}function o(t,e,r,i){var a=t.gl;a.disable(a.STENCIL_TEST);var o,s,l=e.getTile(i),c=t.transform.calculatePosMatrix(i,e.maxzoom),u=t.useProgram("raster");a.uniformMatrix4fv(u.u_matrix,!1,c),a.uniform1f(u.u_brightness_low,r.paint["raster-brightness-min"]),a.uniform1f(u.u_brightness_high,r.paint["raster-brightness-max"]),a.uniform1f(u.u_saturation_factor,(o=r.paint["raster-saturation"])>0?1-1/(1.001-o):-o),a.uniform1f(u.u_contrast_factor,(s=r.paint["raster-contrast"])>0?1/(1-s):1+s),a.uniform3fv(u.u_spin_weights,function(t){t*=Math.PI/180;var e=Math.sin(t),r=Math.cos(t);return[(2*r+1)/3,(-Math.sqrt(3)*e-r+1)/3,(Math.sqrt(3)*e-r+1)/3]}(r.paint["raster-hue-rotate"]));var f,h,d=l.source&&l.source.findLoadedParent(i,0,{}),p=function(t,e,r,i){var a=[1,0],o=r.paint["raster-fade-duration"];if(t.source&&o>0){var s=(new Date).getTime(),l=(s-t.timeAdded)/o,c=e?(s-e.timeAdded)/o:-1,u=i.coveringZoomLevel(t.source),f=!!e&&Math.abs(e.coord.z-u)>Math.abs(t.coord.z-u);!e||f?(a[0]=n.clamp(l,0,1),a[1]=1-a[0]):(a[0]=n.clamp(1-c,0,1),a[1]=1-a[0])}var h=r.paint["raster-opacity"];return a[0]*=h,a[1]*=h,a}(l,d,r,t.transform);a.activeTexture(a.TEXTURE0),a.bindTexture(a.TEXTURE_2D,l.texture),a.activeTexture(a.TEXTURE1),d?(a.bindTexture(a.TEXTURE_2D,d.texture),f=Math.pow(2,d.coord.z-l.coord.z),h=[l.coord.x*f%1,l.coord.y*f%1]):(a.bindTexture(a.TEXTURE_2D,l.texture),p[1]=0),a.uniform2fv(u.u_tl_parent,h||[0,0]),a.uniform1f(u.u_scale_parent,f||1),a.uniform1f(u.u_buffer_scale,1),a.uniform1f(u.u_opacity0,p[0]),a.uniform1f(u.u_opacity1,p[1]),a.uniform1i(u.u_image0,0),a.uniform1i(u.u_image1,1);var m=l.boundsBuffer||t.rasterBoundsBuffer;(l.boundsVAO||t.rasterBoundsVAO).bind(a,u,m),a.drawArrays(a.TRIANGLE_STRIP,0,m.length)}e.exports=a,a.RasterBoundsArray=new i({members:[{name:"a_pos",type:"Int16",components:2},{name:"a_texture_pos",type:"Int16",components:2}]})},{"../util/struct_array":412,"../util/util":414}],324:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("./draw_collision_debug"),a=t("../source/pixels_to_tile_units");function o(t,e,r,n,i,a,o,l,c,u,f,h,d,p,m){for(var v=0;v<n.length;v++){var g=e.getTile(n[v]),y=g.getBucket(r);if(y){var b=y.bufferGroups,x=i?b.glyph:b.icon;x.length&&(t.enableTileClippingMask(n[v]),s(t,r,n[v].posMatrix,g,y,x,i,i||y.sdfIcons,!i&&y.iconsNeedLinear,i?y.adjustedTextSize:y.adjustedIconSize,y.fontstack,a,o,l,c,u,f,h,d,p,m))}}}function s(t,e,r,i,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w){var M,k,A,T=t.gl,E=t.transform,S="map"===m,L="map"===v,C=l?24:1,P=g/C;if(L?(k=a(i,1,t.transform.zoom)*P,A=1/Math.cos(E._pitch),M=[k,k]):(k=t.transform.altitude*P,A=1,M=[E.pixelsToGLUnits[0]*k,E.pixelsToGLUnits[1]*k]),l||t.style.sprite.loaded()){var z=t.useProgram(c?"sdf":"icon");if(T.uniformMatrix4fv(z.u_matrix,!1,t.translatePosMatrix(r,i,d,p)),T.uniform1i(z.u_rotate_with_map,S),T.uniform1i(z.u_pitch_with_map,L),T.uniform2fv(z.u_extrude_scale,M),T.activeTexture(T.TEXTURE0),T.uniform1i(z.u_texture,0),l){var O=h&&t.glyphSource.getGlyphAtlas(h);if(!O)return;O.updateTexture(T),T.uniform2f(z.u_texsize,O.width/4,O.height/4)}else{var D=t.options.rotating||t.options.zooming,I=1!==P||n.devicePixelRatio!==t.spriteAtlas.pixelRatio||u,R=L||t.transform.pitch;t.spriteAtlas.bind(T,c||D||I||R),T.uniform2f(z.u_texsize,t.spriteAtlas.width/4,t.spriteAtlas.height/4)}var N,F=Math.log(g/f)/Math.LN2||0;if(T.uniform1f(z.u_zoom,10*(t.transform.zoom-F)),T.activeTexture(T.TEXTURE1),t.frameHistory.bind(T),T.uniform1i(z.u_fadetexture,1),c){var j=.105*C/g/n.devicePixelRatio;if(y){T.uniform1f(z.u_gamma,(1.19*x/P/8+j)*A),T.uniform4fv(z.u_color,b),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,(6-y/P)/8);for(var B=0;B<s.length;B++)(N=s[B]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}T.uniform1f(z.u_gamma,j*A),T.uniform4fv(z.u_color,w),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,.75),T.uniform1f(z.u_pitch,E.pitch/360*2*Math.PI),T.uniform1f(z.u_bearing,E.bearing/360*2*Math.PI),T.uniform1f(z.u_aspect_ratio,E.width/E.height);for(var U=0;U<s.length;U++)(N=s[U]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}else{T.uniform1f(z.u_opacity,_);for(var V=0;V<s.length;V++)(N=s[V]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}}}e.exports=function(t,e,r,n){if(t.isOpaquePass)return;var a=!(r.layout["text-allow-overlap"]||r.layout["icon-allow-overlap"]||r.layout["text-ignore-placement"]||r.layout["icon-ignore-placement"]),s=t.gl;a?s.disable(s.STENCIL_TEST):s.enable(s.STENCIL_TEST);t.setDepthSublayer(0),t.depthMask(!1),s.disable(s.DEPTH_TEST),o(t,e,r,n,!1,r.paint["icon-translate"],r.paint["icon-translate-anchor"],r.layout["icon-rotation-alignment"],r.layout["icon-rotation-alignment"],r.layout["icon-size"],r.paint["icon-halo-width"],r.paint["icon-halo-color"],r.paint["icon-halo-blur"],r.paint["icon-opacity"],r.paint["icon-color"]),o(t,e,r,n,!0,r.paint["text-translate"],r.paint["text-translate-anchor"],r.layout["text-rotation-alignment"],r.layout["text-pitch-alignment"],r.layout["text-size"],r.paint["text-halo-width"],r.paint["text-halo-color"],r.paint["text-halo-blur"],r.paint["text-opacity"],r.paint["text-color"]),s.enable(s.DEPTH_TEST),e.map.showCollisionBoxes&&i(t,e,r,n)}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"./draw_collision_debug":319}],325:[function(t,e,r){"use strict";function n(){this.changeTimes=new Float64Array(256),this.changeOpacities=new Uint8Array(256),this.opacities=new Uint8ClampedArray(256),this.array=new Uint8Array(this.opacities.buffer),this.fadeDuration=300,this.previousZoom=0,this.firstFrame=!0}e.exports=n,n.prototype.record=function(t){var e,r=Date.now();if(this.firstFrame&&(r=0,this.firstFrame=!1),(t=Math.floor(10*t))<this.previousZoom)for(e=t+1;e<=this.previousZoom;e++)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];else for(e=t;e>this.previousZoom;e--)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];for(e=0;e<256;e++){var n=(r-this.changeTimes[e])/this.fadeDuration*255;this.opacities[e]=e<=t?this.changeOpacities[e]+n:this.changeOpacities[e]-n}this.changed=!0,this.previousZoom=t},n.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.changed&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,256,1,t.ALPHA,t.UNSIGNED_BYTE,this.array),this.changed=!1)):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,256,1,0,t.ALPHA,t.UNSIGNED_BYTE,this.array))}},{}],326:[function(t,e,r){"use strict";var n=t("../util/util");function i(t,e){this.width=t,this.height=e,this.nextRow=0,this.bytes=4,this.data=new Uint8Array(this.width*this.height*this.bytes),this.positions={}}e.exports=i,i.prototype.setSprite=function(t){this.sprite=t},i.prototype.getDash=function(t,e){var r=t.join(",")+e;return this.positions[r]||(this.positions[r]=this.addDash(t,e)),this.positions[r]},i.prototype.addDash=function(t,e){var r=e?7:0,i=2*r+1;if(this.nextRow+i>this.height)return n.warnOnce("LineAtlas out of space"),null;for(var a=0,o=0;o<t.length;o++)a+=t[o];for(var s=this.width/a,l=s/2,c=t.length%2==1,u=-r;u<=r;u++)for(var f=this.nextRow+r+u,h=this.width*f,d=c?-t[t.length-1]:0,p=t[0],m=1,v=0;v<this.width;v++){for(;p<v/s;)d=p,p+=t[m],c&&m===t.length-1&&(p+=t[0]),m++;var g,y=Math.abs(v-d*s),b=Math.abs(v-p*s),x=Math.min(y,b),_=m%2==1;if(e){var w=r?u/r*(l+1):0;if(_){var M=l-Math.abs(w);g=Math.sqrt(x*x+M*M)}else g=l-Math.sqrt(x*x+w*w)}else g=(_?1:-1)*x;this.data[3+4*(h+v)]=Math.max(0,Math.min(255,g+128))}var k={y:(this.nextRow+r+.5)/this.height,height:2*r/this.height,width:a};return this.nextRow+=i,this.dirty=!0,k},i.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.dirty&&(this.dirty=!1,t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.RGBA,t.UNSIGNED_BYTE,this.data))):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width,this.height,0,t.RGBA,t.UNSIGNED_BYTE,this.data))}},{"../util/util":414}],327:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat4,a=t("./frame_history"),o=t("../source/source_cache"),s=t("../data/bucket").EXTENT,l=t("../source/pixels_to_tile_units"),c=t("../util/util"),u=t("../util/struct_array"),f=t("../data/buffer"),h=t("./vertex_array_object"),d=t("./draw_raster").RasterBoundsArray,p=t("./create_uniform_pragmas");function m(t,e){this.gl=t,this.transform=e,this.reusableTextures={},this.preFbos={},this.frameHistory=new a,this.setup(),this.numSublayers=o.maxUnderzooming+o.maxOverzooming+1,this.depthEpsilon=1/Math.pow(2,16),this.lineWidthRange=t.getParameter(t.ALIASED_LINE_WIDTH_RANGE)}e.exports=m,c.extend(m.prototype,t("./painter/use_program")),m.prototype.resize=function(t,e){var r=this.gl;this.width=t*n.devicePixelRatio,this.height=e*n.devicePixelRatio,r.viewport(0,0,this.width,this.height)},m.prototype.setup=function(){var t=this.gl;t.verbose=!0,t.enable(t.BLEND),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),t.enable(t.STENCIL_TEST),t.enable(t.DEPTH_TEST),t.depthFunc(t.LEQUAL),this._depthMask=!1,t.depthMask(!1);var e=this.PosArray=new u({members:[{name:"a_pos",type:"Int16",components:2}]}),r=new e;r.emplaceBack(0,0),r.emplaceBack(s,0),r.emplaceBack(0,s),r.emplaceBack(s,s),this.tileExtentBuffer=new f(r.serialize(),e.serialize(),f.BufferType.VERTEX),this.tileExtentVAO=new h,this.tileExtentPatternVAO=new h;var n=new e;n.emplaceBack(0,0),n.emplaceBack(s,0),n.emplaceBack(s,s),n.emplaceBack(0,s),n.emplaceBack(0,0),this.debugBuffer=new f(n.serialize(),e.serialize(),f.BufferType.VERTEX),this.debugVAO=new h;var i=new d;i.emplaceBack(0,0,0,0),i.emplaceBack(s,0,32767,0),i.emplaceBack(0,s,0,32767),i.emplaceBack(s,s,32767,32767),this.rasterBoundsBuffer=new f(i.serialize(),d.serialize(),f.BufferType.VERTEX),this.rasterBoundsVAO=new h},m.prototype.clearColor=function(){var t=this.gl;t.clearColor(0,0,0,0),t.clear(t.COLOR_BUFFER_BIT)},m.prototype.clearStencil=function(){var t=this.gl;t.clearStencil(0),t.stencilMask(255),t.clear(t.STENCIL_BUFFER_BIT)},m.prototype.clearDepth=function(){var t=this.gl;t.clearDepth(1),this.depthMask(!0),t.clear(t.DEPTH_BUFFER_BIT)},m.prototype._renderTileClippingMasks=function(t){var e=this.gl;e.colorMask(!1,!1,!1,!1),this.depthMask(!1),e.disable(e.DEPTH_TEST),e.enable(e.STENCIL_TEST),e.stencilMask(248),e.stencilOp(e.KEEP,e.KEEP,e.REPLACE);var r=1;this._tileClippingMaskIDs={};for(var n=0;n<t.length;n++){var i=t[n],a=this._tileClippingMaskIDs[i.id]=r++<<3;e.stencilFunc(e.ALWAYS,a,248);var o=p([{name:"u_color",components:4},{name:"u_opacity",components:1}]),s=this.useProgram("fill",[],o,o);e.uniformMatrix4fv(s.u_matrix,!1,i.posMatrix),this.tileExtentVAO.bind(e,s,this.tileExtentBuffer),e.drawArrays(e.TRIANGLE_STRIP,0,this.tileExtentBuffer.length)}e.stencilMask(0),e.colorMask(!0,!0,!0,!0),this.depthMask(!0),e.enable(e.DEPTH_TEST)},m.prototype.enableTileClippingMask=function(t){var e=this.gl;e.stencilFunc(e.EQUAL,this._tileClippingMaskIDs[t.id],248)},m.prototype.prepareBuffers=function(){},m.prototype.bindDefaultFramebuffer=function(){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,null)};var v={symbol:t("./draw_symbol"),circle:t("./draw_circle"),line:t("./draw_line"),fill:t("./draw_fill"),raster:t("./draw_raster"),background:t("./draw_background"),debug:t("./draw_debug")};m.prototype.render=function(t,e){this.style=t,this.options=e,this.lineAtlas=t.lineAtlas,this.spriteAtlas=t.spriteAtlas,this.spriteAtlas.setSprite(t.sprite),this.glyphSource=t.glyphSource,this.frameHistory.record(this.transform.zoom),this.prepareBuffers(),this.clearColor(),this.clearDepth(),this.showOverdrawInspector(e.showOverdrawInspector),this.depthRange=(t._order.length+2)*this.numSublayers*this.depthEpsilon,this.renderPass({isOpaquePass:!0}),this.renderPass({isOpaquePass:!1})},m.prototype.renderPass=function(t){var e=this.style._groups,r=t.isOpaquePass;this.currentLayer=r?this.style._order.length:-1;for(var n=0;n<e.length;n++){var i,a=e[r?e.length-1-n:n],o=this.style.sources[a.source],s=[];if(o){for(s=o.getVisibleCoordinates(),i=0;i<s.length;i++)s[i].posMatrix=this.transform.calculatePosMatrix(s[i],o.maxzoom);this.clearStencil(),o.prepare&&o.prepare(),o.isTileClipped&&this._renderTileClippingMasks(s)}for(r?(this._showOverdrawInspector||this.gl.disable(this.gl.BLEND),this.isOpaquePass=!0):(this.gl.enable(this.gl.BLEND),this.isOpaquePass=!1,s.reverse()),i=0;i<a.length;i++){var l=a[r?a.length-1-i:i];this.currentLayer+=r?-1:1,this.renderLayer(this,o,l,s)}o&&v.debug(this,o,s)}},m.prototype.depthMask=function(t){t!==this._depthMask&&(this._depthMask=t,this.gl.depthMask(t))},m.prototype.renderLayer=function(t,e,r,n){r.isHidden(this.transform.zoom)||("background"===r.type||n.length)&&(this.id=r.id,v[r.type](t,e,r,n))},m.prototype.setDepthSublayer=function(t){var e=1-((1+this.currentLayer)*this.numSublayers+t)*this.depthEpsilon,r=e-1+this.depthRange;this.gl.depthRange(r,e)},m.prototype.translatePosMatrix=function(t,e,r,n){if(!r[0]&&!r[1])return t;if("viewport"===n){var a=Math.sin(-this.transform.angle),o=Math.cos(-this.transform.angle);r=[r[0]*o-r[1]*a,r[0]*a+r[1]*o]}var s=[l(e,r[0],this.transform.zoom),l(e,r[1],this.transform.zoom),0],c=new Float32Array(16);return i.translate(c,t,s),c},m.prototype.saveTexture=function(t){var e=this.reusableTextures[t.size];e?e.push(t):this.reusableTextures[t.size]=[t]},m.prototype.getTexture=function(t){var e=this.reusableTextures[t];return e&&e.length>0?e.pop():null},m.prototype.lineWidth=function(t){this.gl.lineWidth(c.clamp(t,this.lineWidthRange[0],this.lineWidthRange[1]))},m.prototype.showOverdrawInspector=function(t){if(t||this._showOverdrawInspector){this._showOverdrawInspector=t;var e=this.gl;if(t){e.blendFunc(e.CONSTANT_COLOR,e.ONE);e.blendColor(1/8,1/8,1/8,0),e.clearColor(0,0,0,1),e.clear(e.COLOR_BUFFER_BIT)}else e.blendFunc(e.ONE,e.ONE_MINUS_SRC_ALPHA)}}},{"../data/bucket":301,"../data/buffer":306,"../source/pixels_to_tile_units":335,"../source/source_cache":339,"../util/browser":398,"../util/struct_array":412,"../util/util":414,"./create_uniform_pragmas":316,"./draw_background":317,"./draw_circle":318,"./draw_debug":320,"./draw_fill":321,"./draw_line":322,"./draw_raster":323,"./draw_symbol":324,"./frame_history":325,"./painter/use_program":328,"./vertex_array_object":329,"gl-matrix":198}],328:[function(t,e,r){"use strict";var n=t("assert"),i=t("../../util/util"),a=t("mapbox-gl-shaders"),o=a.util;function s(t,e){return t.replace(/#pragma mapbox: ([\w]+) ([\w]+) ([\w]+) ([\w]+)/g,function(t,r,n,i,a){return e[r][a].replace(/{type}/g,i).replace(/{precision}/g,n)})}e.exports._createProgram=function(t,e,r,l){for(var c=this.gl,u=c.createProgram(),f=a[t],h="#define MAPBOX_GL_JS;\n",d=0;d<e.length;d++)h+="#define "+e[d]+";\n";var p=c.createShader(c.FRAGMENT_SHADER);c.shaderSource(p,s(h+f.fragmentSource,l)),c.compileShader(p),n(c.getShaderParameter(p,c.COMPILE_STATUS),c.getShaderInfoLog(p)),c.attachShader(u,p);var m=c.createShader(c.VERTEX_SHADER);c.shaderSource(m,s(h+o+f.vertexSource,r)),c.compileShader(m),n(c.getShaderParameter(m,c.COMPILE_STATUS),c.getShaderInfoLog(m)),c.attachShader(u,m),c.linkProgram(u),n(c.getProgramParameter(u,c.LINK_STATUS),c.getProgramInfoLog(u));for(var v={},g=c.getProgramParameter(u,c.ACTIVE_ATTRIBUTES),y=0;y<g;y++){var b=c.getActiveAttrib(u,y);v[b.name]=c.getAttribLocation(u,b.name)}for(var x={},_=c.getProgramParameter(u,c.ACTIVE_UNIFORMS),w=0;w<_;w++){var M=c.getActiveUniform(u,w);x[M.name]=c.getUniformLocation(u,M.name)}return i.extend({program:u,definition:f,attributes:v,numAttributes:g},v,x)},e.exports._createProgramCached=function(t,e,r,n){this.cache=this.cache||{};var i=JSON.stringify({name:t,defines:e,vertexPragmas:r,fragmentPragmas:n});return this.cache[i]||(this.cache[i]=this._createProgram(t,e,r,n)),this.cache[i]},e.exports.useProgram=function(t,e,r,n){var i=this.gl;e=e||[],this._showOverdrawInspector&&(e=e.concat("OVERDRAW_INSPECTOR"));var a=this._createProgramCached(t,e,r,n);return this.currentProgram!==a&&(i.useProgram(a.program),this.currentProgram=a),a}},{"../../util/util":414,assert:51,"mapbox-gl-shaders":275}],329:[function(t,e,r){"use strict";var n=t("assert");function i(){this.boundProgram=null,this.boundVertexBuffer=null,this.boundVertexBuffer2=null,this.boundElementBuffer=null,this.vao=null}e.exports=i,i.prototype.bind=function(t,e,r,n,i){void 0===t.extVertexArrayObject&&(t.extVertexArrayObject=t.getExtension("OES_vertex_array_object"));var a=!this.vao||this.boundProgram!==e||this.boundVertexBuffer!==r||this.boundVertexBuffer2!==i||this.boundElementBuffer!==n;!t.extVertexArrayObject||a?this.freshBind(t,e,r,n,i):t.extVertexArrayObject.bindVertexArrayOES(this.vao)},i.prototype.freshBind=function(t,e,r,i,a){var o,s=e.numAttributes;if(t.extVertexArrayObject)this.vao&&this.destroy(t),this.vao=t.extVertexArrayObject.createVertexArrayOES(),t.extVertexArrayObject.bindVertexArrayOES(this.vao),o=0,this.boundProgram=e,this.boundVertexBuffer=r,this.boundVertexBuffer2=a,this.boundElementBuffer=i;else{o=t.currentNumAttributes||0;for(var l=s;l<o;l++)n(0!==l),t.disableVertexAttribArray(l)}for(var c=o;c<s;c++)t.enableVertexAttribArray(c);r.bind(t),r.setVertexAttribPointers(t,e),a&&(a.bind(t),a.setVertexAttribPointers(t,e)),i&&i.bind(t),t.currentNumAttributes=s},i.prototype.unbind=function(t){var e=t.extVertexArrayObject;e&&e.bindVertexArrayOES(null)},i.prototype.destroy=function(t){var e=t.extVertexArrayObject;e&&this.vao&&(e.deleteVertexArrayOES(this.vao),this.vao=null)}},{assert:51}],330:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("resolve-url"),o=t("../data/bucket").EXTENT;function s(t,e,r){e=e||{},this.id=t,this.dispatcher=r,this._data=e.data,void 0!==e.maxzoom&&(this.maxzoom=e.maxzoom),e.type&&(this.type=e.type);var n=o/this.tileSize;this.workerOptions=i.extend({source:this.id,cluster:e.cluster||!1,geojsonVtOptions:{buffer:(void 0!==e.buffer?e.buffer:128)*n,tolerance:(void 0!==e.tolerance?e.tolerance:.375)*n,extent:o,maxZoom:this.maxzoom},superclusterOptions:{maxZoom:Math.min(e.clusterMaxZoom,this.maxzoom-1)||this.maxzoom-1,extent:o,radius:(e.clusterRadius||50)*n,log:!1}},e.workerOptions),this._updateWorkerData(function(t){t?this.fire("error",{error:t}):this.fire("load")}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{type:"geojson",minzoom:0,maxzoom:18,tileSize:512,isTileClipped:!0,reparseOverscaled:!0,onAdd:function(t){this.map=t},setData:function(t){return this._data=t,this._updateWorkerData(function(t){if(t)return this.fire("error",{error:t});this.fire("change")}.bind(this)),this},_updateWorkerData:function(t){var e=i.extend({},this.workerOptions),r=this._data;"string"==typeof r?e.url="undefined"!=typeof window?a(window.location.href,r):r:e.data=JSON.stringify(r),this.workerID=this.dispatcher.send(this.type+".loadData",e,function(e){this._loaded=!0,t(e)}.bind(this))},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={type:this.type,uid:t.uid,coord:t.coord,zoom:t.coord.z,maxZoom:this.maxzoom,tileSize:this.tileSize,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};t.workerID=this.dispatcher.send("load tile",n,function(r,n){if(t.unloadVectorData(this.map.painter),!t.aborted)return r?e(r):(t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null))}.bind(this),this.workerID)},abortTile:function(t){t.aborted=!0},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},function(){},t.workerID)},serialize:function(){return{type:this.type,data:this._data}}})},{"../data/bucket":301,"../util/evented":406,"../util/util":414,"resolve-url":488}],331:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("geojson-rewind"),o=t("./geojson_wrapper"),s=t("vt-pbf"),l=t("supercluster"),c=t("geojson-vt"),u=t("./vector_tile_worker_source");function f(t,e,r){r&&(this.loadGeoJSON=r),u.call(this,t,e)}e.exports=f,f.prototype=n.inherit(u,{_geoJSONIndexes:{},loadVectorData:function(t,e){var r=t.source,n=t.coord;if(!this._geoJSONIndexes[r])return e(null,null);var i=this._geoJSONIndexes[r].getTile(Math.min(n.z,t.maxZoom),n.x,n.y);if(!i)return e(null,null);var a=new o(i.features);a.name="_geojsonTileLayer";var l=s({layers:{_geojsonTileLayer:a}});0===l.byteOffset&&l.byteLength===l.buffer.byteLength||(l=new Uint8Array(l)),e(null,{tile:a,rawTileData:l.buffer})},loadData:function(t,e){var r=function(r,n){return r?e(r):"object"!=typeof n?e(new Error("Input data is not a valid GeoJSON object.")):(a(n,!0),void this._indexData(n,t,function(r,n){if(r)return e(r);this._geoJSONIndexes[t.source]=n,e(null)}.bind(this)))}.bind(this);this.loadGeoJSON(t,r)},loadGeoJSON:function(t,e){if(t.url)i.getJSON(t.url,e);else{if("string"!=typeof t.data)return e(new Error("Input data is not a valid GeoJSON object."));try{return e(null,JSON.parse(t.data))}catch(t){return e(new Error("Input data is not a valid GeoJSON object."))}}},_indexData:function(t,e,r){try{e.cluster?r(null,l(e.superclusterOptions).load(t.features)):r(null,c(t,e.geojsonVtOptions))}catch(t){return r(t)}}})},{"../util/ajax":397,"../util/util":414,"./geojson_wrapper":332,"./vector_tile_worker_source":343,"geojson-rewind":147,"geojson-vt":151,supercluster:518,"vt-pbf":550}],332:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("vector-tile").VectorTileFeature,a=t("../data/bucket").EXTENT;function o(t){this.features=t,this.length=t.length,this.extent=a}function s(t){if(this.type=t.type,1===t.type){this.rawGeometry=[];for(var e=0;e<t.geometry.length;e++)this.rawGeometry.push([t.geometry[e]])}else this.rawGeometry=t.geometry;this.properties=t.tags,this.extent=a}e.exports=o,o.prototype.feature=function(t){return new s(this.features[t])},s.prototype.loadGeometry=function(){var t=this.rawGeometry;this.geometry=[];for(var e=0;e<t.length;e++){for(var r=t[e],i=[],a=0;a<r.length;a++)i.push(new n(r[a][0],r[a][1]));this.geometry.push(i)}return this.geometry},s.prototype.bbox=function(){this.geometry||this.loadGeometry();for(var t=this.geometry,e=1/0,r=-1/0,n=1/0,i=-1/0,a=0;a<t.length;a++)for(var o=t[a],s=0;s<o.length;s++){var l=o[s];e=Math.min(e,l.x),r=Math.max(r,l.x),n=Math.min(n,l.y),i=Math.max(i,l.y)}return[e,n,r,i]},s.prototype.toGeoJSON=i.prototype.toGeoJSON},{"../data/bucket":301,"point-geometry":458,"vector-tile":544}],333:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e,r){this.id=t,this.dispatcher=r,this.url=e.url,this.coordinates=e.coordinates,l.getImage(e.url,function(t,r){if(t)return this.fire("error",{error:t});this.image=r,this.image.addEventListener("load",function(){this.map._rerender()}.bind(this)),this._loaded=!0,this.fire("load"),this.map&&this.setCoordinates(e.coordinates)}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,onAdd:function(t){this.map=t,this.image&&this.setCoordinates(this.coordinates)},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(this._loaded&&this.image&&this.image.complete&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.image)):(this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.image))}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"image",urls:this.url,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],334:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSourceURL;e.exports=function(t,e){var r=function(t,r){if(t)return e(t);var i=n.pick(r,["tiles","minzoom","maxzoom","attribution"]);r.vector_layers&&(i.vectorLayers=r.vector_layers,i.vectorLayerIds=i.vectorLayers.map(function(t){return t.id})),e(null,i)};t.url?i.getJSON(o(t.url),r):a.frame(r.bind(null,null,t))}},{"../util/ajax":397,"../util/browser":398,"../util/mapbox":411,"../util/util":414}],335:[function(t,e,r){"use strict";var n=t("../data/bucket");e.exports=function(t,e,r){return e*(n.EXTENT/(t.tileSize*Math.pow(2,r-t.coord.z)))}},{"../data/bucket":301}],336:[function(t,e,r){"use strict";var n=t("./tile_coord");function i(t,e){var r=t.coord,n=e.coord;return r.z-n.z||r.y-n.y||r.w-n.w||r.x-n.x}r.rendered=function(t,e,r,n,a,o){var s=t.tilesIn(r);s.sort(i);for(var l=[],c=0;c<s.length;c++){var u=s[c];u.tile.featureIndex&&l.push(u.tile.featureIndex.query({queryGeometry:u.queryGeometry,scale:u.scale,tileSize:u.tile.tileSize,bearing:o,params:n},e))}return function(t){for(var e=t[0]||{},r=1;r<t.length;r++){var n=t[r];for(var i in n){var a=n[i],o=e[i];if(void 0===o)o=e[i]=a;else for(var s=0;s<a.length;s++)o.push(a[s])}}return e}(l)},r.source=function(t,e){for(var r=t.getRenderableIds().map(function(e){return t.getTileByID(e)}),i=[],a={},o=0;o<r.length;o++){var s=r[o],l=new n(Math.min(s.sourceMaxZoom,s.coord.z),s.coord.x,s.coord.y,0).id;a[l]||(a[l]=!0,s.querySourceFeatures(i,e))}return i}},{"./tile_coord":341}],337:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/evented"),o=t("./load_tilejson"),s=t("../util/mapbox").normalizeTileURL;function l(t,e,r){this.id=t,this.dispatcher=r,n.extend(this,n.pick(e,["url","scheme","tileSize"])),o(e,function(t,e){if(t)return this.fire("error",t);n.extend(this,e),this.fire("load")}.bind(this))}e.exports=l,l.prototype=n.inherit(a,{minzoom:0,maxzoom:22,roundZoom:!0,scheme:"xyz",tileSize:512,_loaded:!1,onAdd:function(t){this.map=t},serialize:function(){return{type:"raster",url:this.url,tileSize:this.tileSize}},loadTile:function(t,e){var r=s(t.coord.url(this.tiles,null,this.scheme),this.url,this.tileSize);t.request=i.getImage(r,function(r,n){if(delete t.request,t.aborted)return;if(r)return e(r);var i=this.map.painter.gl;t.texture=this.map.painter.getTexture(n.width),t.texture?(i.bindTexture(i.TEXTURE_2D,t.texture),i.texSubImage2D(i.TEXTURE_2D,0,0,0,i.RGBA,i.UNSIGNED_BYTE,n)):(t.texture=i.createTexture(),i.bindTexture(i.TEXTURE_2D,t.texture),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MIN_FILTER,i.LINEAR_MIPMAP_NEAREST),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MAG_FILTER,i.LINEAR),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_S,i.CLAMP_TO_EDGE),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_T,i.CLAMP_TO_EDGE),i.pixelStorei(i.UNPACK_PREMULTIPLY_ALPHA_WEBGL,!0),i.texImage2D(i.TEXTURE_2D,0,i.RGBA,i.RGBA,i.UNSIGNED_BYTE,n),t.texture.size=n.width);i.generateMipmap(i.TEXTURE_2D),this.map.animationLoop.set(this.map.style.rasterFadeDuration),t.state="loaded",e(null)}.bind(this))},abortTile:function(t){t.request&&(t.request.abort(),delete t.request)},unloadTile:function(t){t.texture&&this.map.painter.saveTexture(t.texture)}})},{"../util/ajax":397,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],338:[function(t,e,r){"use strict";var n=t("../util/util"),i={vector:t("../source/vector_tile_source"),raster:t("../source/raster_tile_source"),geojson:t("../source/geojson_source"),video:t("../source/video_source"),image:t("../source/image_source")};r.create=function(t,e,r){if((e=new i[e.type](t,e,r)).id!==t)throw new Error("Expected Source id to be "+t+" instead of "+e.id);return n.bindAll(["load","abort","unload","serialize","prepare"],e),e},r.getType=function(t){return i[t]},r.setType=function(t,e){i[t]=e}},{"../source/geojson_source":330,"../source/image_source":333,"../source/raster_tile_source":337,"../source/vector_tile_source":342,"../source/video_source":344,"../util/util":414}],339:[function(t,e,r){"use strict";var n=t("./source"),i=t("./tile"),a=t("../util/evented"),o=t("./tile_coord"),s=t("../util/lru_cache"),l=t("../geo/coordinate"),c=t("../util/util"),u=t("../data/bucket").EXTENT;function f(t,e,r){this.id=t,this.dispatcher=r;var i=this._source=n.create(t,e,r).on("load",function(){this.map&&this._source.onAdd&&this._source.onAdd(this.map),this._sourceLoaded=!0,this.tileSize=i.tileSize,this.minzoom=i.minzoom,this.maxzoom=i.maxzoom,this.roundZoom=i.roundZoom,this.reparseOverscaled=i.reparseOverscaled,this.isTileClipped=i.isTileClipped,this.attribution=i.attribution,this.vectorLayerIds=i.vectorLayerIds,this.fire("load")}.bind(this)).on("error",function(t){this._sourceErrored=!0,this.fire("error",t)}.bind(this)).on("change",function(){this.reload(),this.transform&&this.update(this.transform,this.map&&this.map.style.rasterFadeDuration),this.fire("change")}.bind(this));this._tiles={},this._cache=new s(0,this.unloadTile.bind(this)),this._isIdRenderable=this._isIdRenderable.bind(this)}function h(t,e,r){var n=r.zoomTo(Math.min(t.z,e));return{x:(n.column-(t.x+t.w*Math.pow(2,t.z)))*u,y:(n.row-t.y)*u}}function d(t,e){return t%32-e%32}e.exports=f,f.maxOverzooming=10,f.maxUnderzooming=3,f.prototype=c.inherit(a,{onAdd:function(t){this.map=t,this._source&&this._source.onAdd&&this._source.onAdd(t)},loaded:function(){if(this._sourceErrored)return!0;if(!this._sourceLoaded)return!1;for(var t in this._tiles){var e=this._tiles[t];if("loaded"!==e.state&&"errored"!==e.state)return!1}return!0},getSource:function(){return this._source},loadTile:function(t,e){return this._source.loadTile(t,e)},unloadTile:function(t){if(this._source.unloadTile)return this._source.unloadTile(t)},abortTile:function(t){if(this._source.abortTile)return this._source.abortTile(t)},serialize:function(){return this._source.serialize()},prepare:function(){if(this._sourceLoaded&&this._source.prepare)return this._source.prepare()},getIds:function(){return Object.keys(this._tiles).map(Number).sort(d)},getRenderableIds:function(){return this.getIds().filter(this._isIdRenderable)},_isIdRenderable:function(t){return this._tiles[t].isRenderable()&&!this._coveredTiles[t]},reload:function(){for(var t in this._cache.reset(),this._tiles){var e=this._tiles[t];"loading"!==e.state&&(e.state="reloading"),this.loadTile(this._tiles[t],this._tileLoaded.bind(this,this._tiles[t]))}},_tileLoaded:function(t,e){if(e)return t.state="errored",this.fire("tile.error",{tile:t,error:e}),void this._source.fire("tile.error",{tile:t,error:e});t.source=this,t.timeAdded=(new Date).getTime(),this.fire("tile.load",{tile:t}),this._source.fire("tile.load",{tile:t})},getTile:function(t){return this.getTileByID(t.id)},getTileByID:function(t){return this._tiles[t]},getZoom:function(t){return t.zoom+t.scaleZoom(t.tileSize/this.tileSize)},findLoadedChildren:function(t,e,r){var n=!1;for(var i in this._tiles){var a=this._tiles[i];if(!(r[i]||!a.isRenderable()||a.coord.z<=t.z||a.coord.z>e)){var o=Math.pow(2,Math.min(a.coord.z,this.maxzoom)-Math.min(t.z,this.maxzoom));if(Math.floor(a.coord.x/o)===t.x&&Math.floor(a.coord.y/o)===t.y)for(r[i]=!0,n=!0;a&&a.coord.z-1>t.z;){var s=a.coord.parent(this.maxzoom).id;(a=this._tiles[s])&&a.isRenderable()&&(delete r[i],r[s]=!0)}}}return n},findLoadedParent:function(t,e,r){for(var n=t.z-1;n>=e;n--){t=t.parent(this.maxzoom);var i=this._tiles[t.id];if(i&&i.isRenderable())return r[t.id]=!0,i;if(this._cache.has(t.id))return this.addTile(t),r[t.id]=!0,this._tiles[t.id]}},updateCacheSize:function(t){var e=(Math.ceil(t.width/t.tileSize)+1)*(Math.ceil(t.height/t.tileSize)+1);this._cache.setMaxSize(Math.floor(5*e))},update:function(t,e){if(this._sourceLoaded){var r,n,i;this.updateCacheSize(t);var a=(this.roundZoom?Math.round:Math.floor)(this.getZoom(t)),s=Math.max(a-f.maxOverzooming,this.minzoom),l=Math.max(a+f.maxUnderzooming,this.minzoom),u={},h=(new Date).getTime();this._coveredTiles={};var d=this.used?t.coveringTiles(this._source):[];for(r=0;r<d.length;r++)n=d[r],i=this.addTile(n),u[n.id]=!0,i.isRenderable()||this.findLoadedChildren(n,l,u)||this.findLoadedParent(n,s,u);for(var p,m={},v=Object.keys(u),g=0;g<v.length;g++){var y=v[g];n=o.fromID(y),(i=this._tiles[y])&&i.timeAdded>h-(e||0)&&(this.findLoadedChildren(n,l,u)&&(u[y]=!0),this.findLoadedParent(n,s,m))}for(p in m)u[p]||(this._coveredTiles[p]=!0);for(p in m)u[p]=!0;var b=c.keysDifference(this._tiles,u);for(r=0;r<b.length;r++)this.removeTile(+b[r]);this.transform=t}},addTile:function(t){var e=this._tiles[t.id];if(e)return e;var r=t.wrapped();if((e=this._tiles[r.id])||(e=this._cache.get(r.id))&&this._redoPlacement&&this._redoPlacement(e),!e){var n=t.z,a=n>this.maxzoom?Math.pow(2,n-this.maxzoom):1;e=new i(r,this.tileSize*a,this.maxzoom),this.loadTile(e,this._tileLoaded.bind(this,e))}return e.uses++,this._tiles[t.id]=e,this.fire("tile.add",{tile:e}),this._source.fire("tile.add",{tile:e}),e},removeTile:function(t){var e=this._tiles[t];e&&(e.uses--,delete this._tiles[t],this.fire("tile.remove",{tile:e}),this._source.fire("tile.remove",{tile:e}),e.uses>0||(e.isRenderable()?this._cache.add(e.coord.wrapped().id,e):(e.aborted=!0,this.abortTile(e),this.unloadTile(e))))},clearTiles:function(){for(var t in this._tiles)this.removeTile(t);this._cache.reset()},tilesIn:function(t){for(var e={},r=this.getIds(),n=1/0,i=1/0,a=-1/0,s=-1/0,c=t[0].zoom,f=0;f<t.length;f++){var d=t[f];n=Math.min(n,d.column),i=Math.min(i,d.row),a=Math.max(a,d.column),s=Math.max(s,d.row)}for(var p=0;p<r.length;p++){var m=this._tiles[r[p]],v=o.fromID(r[p]),g=[h(v,m.sourceMaxZoom,new l(n,i,c)),h(v,m.sourceMaxZoom,new l(a,s,c))];if(g[0].x<u&&g[0].y<u&&g[1].x>=0&&g[1].y>=0){for(var y=[],b=0;b<t.length;b++)y.push(h(v,m.sourceMaxZoom,t[b]));var x=e[m.coord.id];void 0===x&&(x=e[m.coord.id]={tile:m,coord:v,queryGeometry:[],scale:Math.pow(2,this.transform.zoom-m.coord.z)}),x.queryGeometry.push(y)}}var _=[];for(var w in e)_.push(e[w]);return _},redoPlacement:function(){for(var t=this.getIds(),e=0;e<t.length;e++){this.getTileByID(t[e]).redoPlacement(this)}},getVisibleCoordinates:function(){return this.getRenderableIds().map(o.fromID)}})},{"../data/bucket":301,"../geo/coordinate":310,"../util/evented":406,"../util/lru_cache":410,"../util/util":414,"./source":338,"./tile":340,"./tile_coord":341}],340:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../data/bucket"),a=t("../data/feature_index"),o=t("vector-tile"),s=t("pbf"),l=t("../util/vectortile_to_geojson"),c=t("feature-filter"),u=t("../symbol/collision_tile"),f=t("../symbol/collision_box"),h=t("../symbol/symbol_instances"),d=t("../symbol/symbol_quads");function p(t,e,r){this.coord=t,this.uid=n.uniqueId(),this.uses=0,this.tileSize=e,this.sourceMaxZoom=r,this.buckets={},this.state="loading"}function m(t,e){if(e){for(var r={},a=0;a<t.length;a++){var o=e.getLayer(t[a].layerId);if(o){var s=i.create(n.extend({layer:o,childLayers:t[a].childLayerIds.map(e.getLayer.bind(e)).filter(function(t){return t})},t[a]));r[s.id]=s}}return r}}e.exports=p,p.prototype={loadVectorData:function(t,e){this.state="loaded",t&&(this.collisionBoxArray=new f(t.collisionBoxArray),this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.symbolInstancesArray=new h(t.symbolInstancesArray),this.symbolQuadsArray=new d(t.symbolQuadsArray),this.featureIndex=new a(t.featureIndex,t.rawTileData,this.collisionTile),this.rawTileData=t.rawTileData,this.buckets=m(t.buckets,e))},reloadSymbolData:function(t,e,r){if("unloaded"!==this.state){for(var i in this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.featureIndex.setCollisionTile(this.collisionTile),this.buckets){var a=this.buckets[i];"symbol"===a.type&&(a.destroy(e.gl),delete this.buckets[i])}n.extend(this.buckets,m(t.buckets,r))}},unloadVectorData:function(t){for(var e in this.buckets){this.buckets[e].destroy(t.gl)}this.collisionBoxArray=null,this.symbolQuadsArray=null,this.symbolInstancesArray=null,this.collisionTile=null,this.featureIndex=null,this.rawTileData=null,this.buckets=null,this.state="unloaded"},redoPlacement:function(t){"loaded"===this.state&&"reloading"!==this.state?(this.state="reloading",t.dispatcher.send("redo placement",{uid:this.uid,source:t.id,angle:t.map.transform.angle,pitch:t.map.transform.pitch,showCollisionBoxes:t.map.showCollisionBoxes},function(e,r){this.reloadSymbolData(r,t.map.painter,t.map.style),t.fire("tile.load",{tile:this}),this.state="loaded",this.redoWhenDone&&(this.redoPlacement(t),this.redoWhenDone=!1)}.bind(this),this.workerID)):this.redoWhenDone=!0},getBucket:function(t){return this.buckets&&this.buckets[t.ref||t.id]},querySourceFeatures:function(t,e){if(this.rawTileData){this.vtLayers||(this.vtLayers=new o.VectorTile(new s(new Uint8Array(this.rawTileData))).layers);var r=this.vtLayers._geojsonTileLayer||this.vtLayers[e.sourceLayer];if(r)for(var n=c(e.filter),i={z:this.coord.z,x:this.coord.x,y:this.coord.y},a=0;a<r.length;a++){var u=r.feature(a);if(n(u)){var f=new l(u,this.coord.z,this.coord.x,this.coord.y);f.tile=i,t.push(f)}}}},isRenderable:function(){return"loaded"===this.state||"reloading"===this.state}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/util":414,"../util/vectortile_to_geojson":415,"feature-filter":141,pbf:451,"vector-tile":544}],341:[function(t,e,r){"use strict";var n=t("assert"),i=t("whoots-js"),a=t("../geo/coordinate");function o(t,e,r,i){n(!isNaN(t)&&t>=0&&t%1==0),n(!isNaN(e)&&e>=0&&e%1==0),n(!isNaN(r)&&r>=0&&r%1==0),isNaN(i)&&(i=0),this.z=+t,this.x=+e,this.y=+r,this.w=+i,(i*=2)<0&&(i=-1*i-1);var a=1<<this.z;this.id=32*(a*a*i+a*this.y+this.x)+this.z,this.posMatrix=null}function s(t,e){if(t.row>e.row){var r=t;t=e,e=r}return{x0:t.column,y0:t.row,x1:e.column,y1:e.row,dx:e.column-t.column,dy:e.row-t.row}}function l(t,e,r,n,i){var a=Math.max(r,Math.floor(e.y0)),o=Math.min(n,Math.ceil(e.y1));if(t.x0===e.x0&&t.y0===e.y0?t.x0+e.dy/t.dy*t.dx<e.x1:t.x1-e.dy/t.dy*t.dx<e.x0){var s=t;t=e,e=s}for(var l=t.dx/t.dy,c=e.dx/e.dy,u=t.dx>0,f=e.dx<0,h=a;h<o;h++){var d=l*Math.max(0,Math.min(t.dy,h+u-t.y0))+t.x0,p=c*Math.max(0,Math.min(e.dy,h+f-e.y0))+e.x0;i(Math.floor(p),Math.ceil(d),h)}}function c(t,e,r,n,i,a){var o,c=s(t,e),u=s(e,r),f=s(r,t);c.dy>u.dy&&(o=c,c=u,u=o),c.dy>f.dy&&(o=c,c=f,f=o),u.dy>f.dy&&(o=u,u=f,f=o),c.dy&&l(f,c,n,i,a),u.dy&&l(f,u,n,i,a)}e.exports=o,o.prototype.toString=function(){return this.z+"/"+this.x+"/"+this.y},o.prototype.toCoordinate=function(t){var e=Math.min(this.z,t),r=Math.pow(2,e),n=this.y,i=this.x+r*this.w;return new a(i,n,e)},o.fromID=function(t){var e=t%32,r=1<<e,n=(t-e)/32,i=n%r,a=(n-i)/r%r,s=Math.floor(n/(r*r));return s%2!=0&&(s=-1*s-1),new o(e,i,a,s/=2)},o.prototype.url=function(t,e,r){var n=i.getTileBBox(this.x,this.y,this.z),a=function(t,e,r){for(var n,i="",a=t;a>0;a--)i+=(e&(n=1<<a-1)?1:0)+(r&n?2:0);return i}(this.z,this.x,this.y);return t[(this.x+this.y)%t.length].replace("{prefix}",(this.x%16).toString(16)+(this.y%16).toString(16)).replace("{z}",Math.min(this.z,e||this.z)).replace("{x}",this.x).replace("{y}","tms"===r?Math.pow(2,this.z)-this.y-1:this.y).replace("{quadkey}",a).replace("{bbox-epsg-3857}",n)},o.prototype.parent=function(t){return 0===this.z?null:this.z>t?new o(this.z-1,this.x,this.y,this.w):new o(this.z-1,Math.floor(this.x/2),Math.floor(this.y/2),this.w)},o.prototype.wrapped=function(){return new o(this.z,this.x,this.y,0)},o.prototype.children=function(t){if(this.z>=t)return[new o(this.z+1,this.x,this.y,this.w)];var e=this.z+1,r=2*this.x,n=2*this.y;return[new o(e,r,n,this.w),new o(e,r+1,n,this.w),new o(e,r,n+1,this.w),new o(e,r+1,n+1,this.w)]},o.cover=function(t,e,r){var n=1<<t,i={};function a(t,e,a){var s,l;if(a>=0&&a<=n)for(s=t;s<e;s++)l=new o(r,(s%n+n)%n,a,Math.floor(s/n)),i[l.id]=l}return c(e[0],e[1],e[2],0,n,a),c(e[2],e[3],e[0],0,n,a),Object.keys(i).map(function(t){return i[t]})}},{"../geo/coordinate":310,assert:51,"whoots-js":560}],342:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("./load_tilejson"),o=t("../util/mapbox").normalizeTileURL;function s(t,e,r){if(this.id=t,this.dispatcher=r,i.extend(this,i.pick(e,["url","scheme","tileSize"])),this._options=i.extend({type:"vector"},e),512!==this.tileSize)throw new Error("vector tile sources must have a tileSize of 512");a(e,function(t,e){t?this.fire("error",t):(i.extend(this,e),this.fire("load"))}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{minzoom:0,maxzoom:22,scheme:"xyz",tileSize:512,reparseOverscaled:!0,isTileClipped:!0,onAdd:function(t){this.map=t},serialize:function(){return i.extend({},this._options)},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={url:o(t.coord.url(this.tiles,this.maxzoom,this.scheme),this.url),uid:t.uid,coord:t.coord,zoom:t.coord.z,tileSize:this.tileSize*r,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};function i(r,n){if(!t.aborted){if(r)return e(r);t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null),t.reloadCallback&&(this.loadTile(t,t.reloadCallback),t.reloadCallback=null)}}t.workerID?"loading"===t.state?t.reloadCallback=e:(n.rawTileData=t.rawTileData,this.dispatcher.send("reload tile",n,i.bind(this),t.workerID)):t.workerID=this.dispatcher.send("load tile",n,i.bind(this))},abortTile:function(t){this.dispatcher.send("abort tile",{uid:t.uid,source:this.id},null,t.workerID)},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},null,t.workerID)}})},{"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],343:[function(t,e,r){"use strict";var n=t("../util/ajax"),i=t("vector-tile"),a=t("pbf"),o=t("./worker_tile");function s(t,e,r){this.actor=t,this.styleLayers=e,r&&(this.loadVectorData=r),this.loading={},this.loaded={}}e.exports=s,s.prototype={loadTile:function(t,e){var r=t.source,n=t.uid;this.loading[r]||(this.loading[r]={});var i=this.loading[r][n]=new o(t);i.abort=this.loadVectorData(t,function(t,a){if(delete this.loading[r][n],t)return e(t);if(!a)return e(null,null);i.data=a.tile,i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,a.rawTileData,e),this.loaded[r]=this.loaded[r]||{},this.loaded[r][n]=i}.bind(this))},reloadTile:function(t,e){var r=this.loaded[t.source],n=t.uid;if(r&&r[n]){var i=r[n];i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,t.rawTileData,e)}},abortTile:function(t){var e=this.loading[t.source],r=t.uid;e&&e[r]&&e[r].abort&&(e[r].abort(),delete e[r])},removeTile:function(t){var e=this.loaded[t.source],r=t.uid;e&&e[r]&&delete e[r]},loadVectorData:function(t,e){var r=n.getArrayBuffer(t.url,function(t,r){if(t)return e(t);var n=new i.VectorTile(new a(new Uint8Array(r)));e(t,{tile:n,rawTileData:r})}.bind(this));return function(){r.abort()}},redoPlacement:function(t,e){var r=this.loaded[t.source],n=this.loading[t.source],i=t.uid;if(r&&r[i]){var a=r[i].redoPlacement(t.angle,t.pitch,t.showCollisionBoxes);a.result&&e(null,a.result,a.transferables)}else n&&n[i]&&(n[i].angle=t.angle)}}},{"../util/ajax":397,"./worker_tile":346,pbf:451,"vector-tile":544}],344:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e){this.id=t,this.urls=e.urls,this.coordinates=e.coordinates,l.getVideo(e.urls,function(t,r){if(t)return this.fire("error",{error:t});var n;this.video=r,this.video.loop=!0,this.video.addEventListener("playing",function(){n=this.map.style.animationLoop.set(1/0),this.map._rerender()}.bind(this)),this.video.addEventListener("pause",function(){this.map.style.animationLoop.cancel(n)}.bind(this)),this.map&&(this.video.play(),this.setCoordinates(e.coordinates)),this.fire("load")}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,roundZoom:!0,getVideo:function(){return this.video},onAdd:function(t){this.map||(this.map=t,this.video&&(this.video.play(),this.setCoordinates(this.coordinates)))},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(!(this.video.readyState<2)&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.video)):(this._prepared=!0,this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.video)),this._currentTime=this.video.currentTime}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"video",urls:this.urls,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],345:[function(t,e,r){"use strict";var n=t("../util/actor"),i=t("../style/style_layer"),a=t("../util/util"),o=t("./vector_tile_worker_source"),s=t("./geojson_worker_source");function l(t){this.self=t,this.actor=new n(t,this);var e={getLayers:function(){return this.layers}.bind(this),getLayerFamilies:function(){return this.layerFamilies}.bind(this)};this.workerSources={vector:new o(this.actor,e),geojson:new s(this.actor,e)},this.self.registerWorkerSource=function(t,r){if(this.workerSources[t])throw new Error('Worker source with name "'+t+'" already registered.');this.workerSources[t]=new r(this.actor,e)}.bind(this)}function c(t){var e={};for(var r in t){var n=t[r],i=n.ref||n.id,a=t[i];a.layout&&"none"===a.layout.visibility||(e[i]=e[i]||[],r===i?e[i].unshift(n):e[i].push(n))}return e}e.exports=function(t){return new l(t)},a.extend(l.prototype,{"set layers":function(t){this.layers={};for(var e=this,r=[],n=0;n<t.length;n++){var a=t[n];"fill"!==a.type&&"line"!==a.type&&"circle"!==a.type&&"symbol"!==a.type||(a.ref?r.push(n):s(a))}for(var o=0;o<r.length;o++)s(t[r[o]]);function s(t){var r=i.create(t,t.ref&&e.layers[t.ref]);r.updatePaintTransitions({},{transition:!1}),e.layers[r.id]=r}this.layerFamilies=c(this.layers)},"update layers":function(t){var e,r,n=this;for(e in t)(r=t[e]).ref&&a(r);for(e in t)(r=t[e]).ref||a(r);function a(t){var e=n.layers[t.ref];n.layers[t.id]?n.layers[t.id].set(t,e):n.layers[t.id]=i.create(t,e),n.layers[t.id].updatePaintTransitions({},{transition:!1})}this.layerFamilies=c(this.layers)},"load tile":function(t,e){var r=t.type||"vector";this.workerSources[r].loadTile(t,e)},"reload tile":function(t,e){var r=t.type||"vector";this.workerSources[r].reloadTile(t,e)},"abort tile":function(t){var e=t.type||"vector";this.workerSources[e].abortTile(t)},"remove tile":function(t){var e=t.type||"vector";this.workerSources[e].removeTile(t)},"redo placement":function(t,e){var r=t.type||"vector";this.workerSources[r].redoPlacement(t,e)},"load worker source":function(t,e){try{this.self.importScripts(t.url),e()}catch(t){e(t)}}})},{"../style/style_layer":353,"../util/actor":396,"../util/util":414,"./geojson_worker_source":331,"./vector_tile_worker_source":343}],346:[function(t,e,r){"use strict";var n=t("../data/feature_index"),i=t("../symbol/collision_tile"),a=t("../data/bucket"),o=t("../symbol/collision_box"),s=t("../util/dictionary_coder"),l=t("../util/util"),c=t("../symbol/symbol_instances"),u=t("../symbol/symbol_quads");function f(t){this.coord=t.coord,this.uid=t.uid,this.zoom=t.zoom,this.tileSize=t.tileSize,this.source=t.source,this.overscaling=t.overscaling,this.angle=t.angle,this.pitch=t.pitch,this.showCollisionBoxes=t.showCollisionBoxes}function h(t){return!t.isEmpty()}function d(t){return t.serialize()}function p(t){var e=[];for(var r in t)t[r].getTransferables(e);return e}function m(t){return t.id}e.exports=f,f.prototype.parse=function(t,e,r,f,v){this.status="parsing",this.data=t,this.collisionBoxArray=new o,this.symbolInstancesArray=new c,this.symbolQuadsArray=new u;var g,y,b,x,_=new i(this.angle,this.pitch,this.collisionBoxArray),w=new n(this.coord,this.overscaling,_,t.layers),M=new s(t.layers?Object.keys(t.layers).sort():["_geojsonTileLayer"]),k=this,A={},T={},E=0;for(var S in e)(y=e[S][0]).source===this.source&&(y.ref||y.minzoom&&this.zoom<y.minzoom||y.maxzoom&&this.zoom>=y.maxzoom||y.layout&&"none"===y.layout.visibility||t.layers&&!t.layers[y.sourceLayer]||((x=a.create({layer:y,index:E++,childLayers:e[S],zoom:this.zoom,overscaling:this.overscaling,showCollisionBoxes:this.showCollisionBoxes,collisionBoxArray:this.collisionBoxArray,symbolQuadsArray:this.symbolQuadsArray,symbolInstancesArray:this.symbolInstancesArray,sourceLayerIndex:M.encode(y.sourceLayer||"_geojsonTileLayer")})).createFilter(),A[y.id]=x,t.layers&&(T[b=y.sourceLayer]=T[b]||{},T[b][y.id]=x)));if(t.layers)for(b in T)1===y.version&&l.warnOnce('Vector tile source "'+this.source+'" layer "'+b+'" does not use vector tile spec v2 and therefore may have some rendering errors.'),(y=t.layers[b])&&L(y,T[b]);else L(t,A);function L(t,e){for(var r=0;r<t.length;r++){var n=t.feature(r);for(var i in n.index=r,e)e[i].filter(n)&&e[i].features.push(n)}}var C=[],P=this.symbolBuckets=[],z=[];for(var O in w.bucketLayerIDs={},A)0!==(x=A[O]).features.length&&(w.bucketLayerIDs[x.index]=x.childLayers.map(m),C.push(x),"symbol"===x.type?P.push(x):z.push(x));var D={},I={},R=0;if(P.length>0){for(g=P.length-1;g>=0;g--)P[g].updateIcons(D),P[g].updateFont(I);for(var N in I)I[N]=Object.keys(I[N]).map(Number);D=Object.keys(D),r.send("get glyphs",{uid:this.uid,stacks:I},function(t,e){I=e,F(t)}),D.length?r.send("get icons",{icons:D},function(t,e){D=e,F(t)}):F()}for(g=z.length-1;g>=0;g--)j(this,z[g]);if(0===P.length)return B();function F(t){if(t)return v(t);if(2===++R){for(var e=P.length-1;e>=0;e--)j(k,P[e]);B()}}function j(t,e){if(e.populateArrays(_,I,D),"symbol"!==e.type)for(var r=0;r<e.features.length;r++){var n=e.features[r];w.insert(n,n.index,e.sourceLayerIndex,e.index)}e.features=null}function B(){k.status="done",k.redoPlacementAfterDone&&(k.redoPlacement(k.angle,k.pitch,null),k.redoPlacementAfterDone=!1);var t=w.serialize(),e=_.serialize(),r=k.collisionBoxArray.serialize(),n=k.symbolInstancesArray.serialize(),i=k.symbolQuadsArray.serialize(),a=[f].concat(t.transferables).concat(e.transferables),o=C.filter(h);v(null,{buckets:o.map(d),featureIndex:t.data,collisionTile:e.data,collisionBoxArray:r,symbolInstancesArray:n,symbolQuadsArray:i,rawTileData:f},p(o).concat(a))}},f.prototype.redoPlacement=function(t,e,r){if("done"!==this.status)return this.redoPlacementAfterDone=!0,this.angle=t,{};for(var n=new i(t,e,this.collisionBoxArray),a=this.symbolBuckets,o=a.length-1;o>=0;o--)a[o].placeFeatures(n,r);var s=n.serialize(),l=a.filter(h);return{result:{buckets:l.map(d),collisionTile:s.data},transferables:p(l).concat(s.transferables)}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/dictionary_coder":404,"../util/util":414}],347:[function(t,e,r){"use strict";function n(){this.n=0,this.times=[]}e.exports=n,n.prototype.stopped=function(){return this.times=this.times.filter(function(t){return t.time>=(new Date).getTime()}),!this.times.length},n.prototype.set=function(t){return this.times.push({id:this.n,time:t+(new Date).getTime()}),this.n++},n.prototype.cancel=function(t){this.times=this.times.filter(function(e){return e.id!==t})}},{}],348:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSpriteURL;function s(t){this.base=t,this.retina=a.devicePixelRatio>1;var e=this.retina?"@2x":"";i.getJSON(o(t,e,".json"),function(t,e){t?this.fire("error",{error:t}):(this.data=e,this.img&&this.fire("load"))}.bind(this)),i.getImage(o(t,e,".png"),function(t,e){if(t)this.fire("error",{error:t});else{for(var r=e.getData(),n=e.data=new Uint8Array(r.length),i=0;i<r.length;i+=4){var a=r[i+3]/255;n[i+0]=r[i+0]*a,n[i+1]=r[i+1]*a,n[i+2]=r[i+2]*a,n[i+3]=r[i+3]}this.img=e,this.data&&this.fire("load")}}.bind(this))}function l(){}e.exports=s,s.prototype=Object.create(n),s.prototype.toJSON=function(){return this.base},s.prototype.loaded=function(){return!(!this.data||!this.img)},s.prototype.resize=function(){if(a.devicePixelRatio>1!==this.retina){var t=new s(this.base);t.on("load",function(){this.img=t.img,this.data=t.data,this.retina=t.retina}.bind(this))}},l.prototype={x:0,y:0,width:0,height:0,pixelRatio:1,sdf:!1},s.prototype.getSpritePosition=function(t){if(!this.loaded())return new l;var e=this.data&&this.data[t];return e&&this.img?e:new l}},{"../util/ajax":397,"../util/browser":398,"../util/evented":406,"../util/mapbox":411}],349:[function(t,e,r){"use strict";var n=t("csscolorparser").parseCSSColor,i=t("../util/util"),a=t("./style_function"),o={};e.exports=function t(e){if(a.isFunctionDefinition(e))return i.extend({},e,{stops:e.stops.map(function(e){return[e[0],t(e[1])]})});if("string"==typeof e){if(!o[e]){var r=n(e);if(!r)throw new Error("Invalid color "+e);o[e]=[r[0]/255*r[3],r[1]/255*r[3],r[2]/255*r[3],r[3]]}return o[e]}throw new Error("Invalid color "+e)}},{"../util/util":414,"./style_function":352,csscolorparser:114}],350:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("./style_layer"),a=t("./image_sprite"),o=t("../symbol/glyph_source"),s=t("../symbol/sprite_atlas"),l=t("../render/line_atlas"),c=t("../util/util"),u=t("../util/ajax"),f=t("../util/mapbox").normalizeStyleURL,h=t("../util/browser"),d=t("../util/dispatcher"),p=t("./animation_loop"),m=t("./validate_style"),v=t("../source/source"),g=t("../source/query_features"),y=t("../source/source_cache"),b=t("./style_spec"),x=t("./style_function");function _(t,e,r){this.animationLoop=e||new p,this.dispatcher=new d(r||1,this),this.spriteAtlas=new s(1024,1024),this.lineAtlas=new 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t;this._groups=[];for(var e=0;e<this._order.length;++e){var r=this._layers[this._order[e]];t&&r.source===t.source||((t=[]).source=r.source,this._groups.push(t)),t.push(r)}},_updateWorkerLayers:function(t){this.dispatcher.broadcast(t?"update layers":"set layers",this._serializeLayers(t))},_serializeLayers:function(t){t=t||this._order;for(var e=[],r={includeRefProperties:!0},n=0;n<t.length;n++)e.push(this._layers[t[n]].serialize(r));return e},_applyClasses:function(t,e){if(this._loaded){t=t||[],e=e||{transition:!0};var r=this.stylesheet.transition||{},n=this._updates.allPaintProps?this._layers:this._updates.paintProps;for(var i in n){var a=this._layers[i],o=this._updates.paintProps[i];if(this._updates.allPaintProps||o.all)a.updatePaintTransitions(t,e,r,this.animationLoop);else for(var s in o)this._layers[i].updatePaintTransition(s,t,e,r,this.animationLoop)}}},_recalculate:function(t){for(var e in this.sources)this.sources[e].used=!1;for(var r in this._updateZoomHistory(t),this.rasterFadeDuration=300,this._layers){var n=this._layers[r];n.recalculate(t,this.zoomHistory),!n.isHidden(t)&&n.source&&(this.sources[n.source].used=!0)}Math.floor(this.z)!==Math.floor(t)&&this.animationLoop.set(300),this.z=t,this.fire("zoom")},_updateZoomHistory:function(t){var e=this.zoomHistory;void 0===e.lastIntegerZoom&&(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=0,e.lastZoom=t),Math.floor(e.lastZoom)<Math.floor(t)?(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=Date.now()):Math.floor(e.lastZoom)>Math.floor(t)&&(e.lastIntegerZoom=Math.floor(t+1),e.lastIntegerZoomTime=Date.now()),e.lastZoom=t},_checkLoaded:function(){if(!this._loaded)throw new Error("Style is not done loading")},update:function(t,e){if(!this._updates.changed)return this;if(this._updates.allLayers)this._groupLayers(),this._updateWorkerLayers();else{var r=Object.keys(this._updates.layers);r.length&&this._updateWorkerLayers(r)}var n,i=Object.keys(this._updates.sources);for(n=0;n<i.length;n++)this._reloadSource(i[n]);for(n=0;n<this._updates.events.length;n++){var a=this._updates.events[n];this.fire(a[0],a[1])}return this._applyClasses(t,e),this._updates.changed&&this.fire("change"),this._resetUpdates(),this},_resetUpdates:function(){this._updates={events:[],layers:{},sources:{},paintProps:{}}},addSource:function(t,e){if(this._checkLoaded(),void 0!==this.sources[t])throw new Error("There is already a source with this ID");if(!e.type)throw new Error("The type property must be defined, but the only the following properties were given: "+Object.keys(e)+".");return["vector","raster","geojson","video","image"].indexOf(e.type)>=0&&this._handleErrors(m.source,"sources."+t,e)?this:(e=new y(t,e,this.dispatcher),this.sources[t]=e,e.style=this,e.on("load",this._forwardSourceEvent).on("error",this._forwardSourceEvent).on("change",this._forwardSourceEvent).on("tile.add",this._forwardTileEvent).on("tile.load",this._forwardTileEvent).on("tile.error",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.add",{source:e}]),this._updates.changed=!0,this)},removeSource:function(t){if(this._checkLoaded(),void 0===this.sources[t])throw new Error("There is no source with this ID");var e=this.sources[t];return delete this.sources[t],delete this._updates.sources[t],e.off("load",this._forwardSourceEvent).off("error",this._forwardSourceEvent).off("change",this._forwardSourceEvent).off("tile.add",this._forwardTileEvent).off("tile.load",this._forwardTileEvent).off("tile.error",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.remove",{source:e}]),this._updates.changed=!0,this},getSource:function(t){return this.sources[t]&&this.sources[t].getSource()},addLayer:function(t,e){if(this._checkLoaded(),!(t instanceof i)){if(this._handleErrors(m.layer,"layers."+t.id,t,!1,{arrayIndex:-1}))return this;var r=t.ref&&this.getLayer(t.ref);t=i.create(t,r)}return this._validateLayer(t),t.on("error",this._forwardLayerEvent),this._layers[t.id]=t,this._order.splice(e?this._order.indexOf(e):1/0,0,t.id),this._updates.allLayers=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.events.push(["layer.add",{layer:t}]),this.updateClasses(t.id)},removeLayer:function(t){this._checkLoaded();var e=this._layers[t];if(void 0===e)throw new Error("There is no layer with this ID");for(var r in this._layers)this._layers[r].ref===t&&this.removeLayer(r);return e.off("error",this._forwardLayerEvent),delete this._layers[t],delete this._updates.layers[t],delete this._updates.paintProps[t],this._order.splice(this._order.indexOf(t),1),this._updates.allLayers=!0,this._updates.events.push(["layer.remove",{layer:e}]),this._updates.changed=!0,this},getLayer:function(t){return this._layers[t]},getReferentLayer:function(t){var e=this.getLayer(t);return e.ref&&(e=this.getLayer(e.ref)),e},setLayerZoomRange:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return n.minzoom===e&&n.maxzoom===r?this:(null!=e&&(n.minzoom=e),null!=r&&(n.maxzoom=r),this._updateLayer(n))},setFilter:function(t,e){this._checkLoaded();var r=this.getReferentLayer(t);return null!==e&&this._handleErrors(m.filter,"layers."+r.id+".filter",e)?this:c.deepEqual(r.filter,e)?this:(r.filter=c.clone(e),this._updateLayer(r))},getFilter:function(t){return this.getReferentLayer(t).filter},setLayoutProperty:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return c.deepEqual(n.getLayoutProperty(e),r)?this:(n.setLayoutProperty(e,r),this._updateLayer(n))},getLayoutProperty:function(t,e){return this.getReferentLayer(t).getLayoutProperty(e)},setPaintProperty:function(t,e,r,n){this._checkLoaded();var i=this.getLayer(t);if(c.deepEqual(i.getPaintProperty(e,n),r))return this;var a=i.isPaintValueFeatureConstant(e);return i.setPaintProperty(e,r,n),!(r&&x.isFunctionDefinition(r)&&"$zoom"!==r.property&&void 0!==r.property)&&a||(this._updates.layers[t]=!0,i.source&&(this._updates.sources[i.source]=!0)),this.updateClasses(t,e)},getPaintProperty:function(t,e,r){return this.getLayer(t).getPaintProperty(e,r)},updateClasses:function(t,e){if(this._updates.changed=!0,t){var r=this._updates.paintProps;r[t]||(r[t]={}),r[t][e||"all"]=!0}else this._updates.allPaintProps=!0;return this},serialize:function(){return c.filterObject({version:this.stylesheet.version,name:this.stylesheet.name,metadata:this.stylesheet.metadata,center:this.stylesheet.center,zoom:this.stylesheet.zoom,bearing:this.stylesheet.bearing,pitch:this.stylesheet.pitch,sprite:this.stylesheet.sprite,glyphs:this.stylesheet.glyphs,transition:this.stylesheet.transition,sources:c.mapObject(this.sources,function(t){return t.serialize()}),layers:this._order.map(function(t){return this._layers[t].serialize()},this)},function(t){return void 0!==t})},_updateLayer:function(t){return this._updates.layers[t.id]=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.changed=!0,this},_flattenRenderedFeatures:function(t){for(var e=[],r=this._order.length-1;r>=0;r--)for(var n=this._order[r],i=0;i<t.length;i++){var a=t[i][n];if(a)for(var o=0;o<a.length;o++)e.push(a[o])}return e},queryRenderedFeatures:function(t,e,r,n){e&&e.filter&&this._handleErrors(m.filter,"queryRenderedFeatures.filter",e.filter,!0);var i={};if(e&&e.layers)for(var a=0;a<e.layers.length;a++){var o=e.layers[a];i[this._layers[o].source]=!0}var s=[];for(var l in this.sources)if(!e.layers||i[l]){var c=this.sources[l],u=g.rendered(c,this._layers,t,e,r,n);s.push(u)}return this._flattenRenderedFeatures(s)},querySourceFeatures:function(t,e){e&&e.filter&&this._handleErrors(m.filter,"querySourceFeatures.filter",e.filter,!0);var r=this.sources[t];return r?g.source(r,e):[]},addSourceType:function(t,e,r){return v.getType(t)?r(new Error('A source type called "'+t+'" already 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r=this.sprite;r.loaded()?e(null,{sprite:r.data,retina:r.retina}):r.on("load",function(){e(null,{sprite:r.data,retina:r.retina})})},"get icons":function(t,e){var r=this.sprite,n=this.spriteAtlas;r.loaded()?(n.setSprite(r),n.addIcons(t.icons,e)):r.on("load",function(){n.setSprite(r),n.addIcons(t.icons,e)})},"get glyphs":function(t,e){var r=t.stacks,n=Object.keys(r).length,i={};for(var a in r)this.glyphSource.getSimpleGlyphs(a,r[a],t.uid,o);function o(t,r,a){t&&console.error(t),i[a]=r,0===--n&&e(null,i)}}})},{"../render/line_atlas":326,"../source/query_features":336,"../source/source":338,"../source/source_cache":339,"../symbol/glyph_source":371,"../symbol/sprite_atlas":376,"../util/ajax":397,"../util/browser":398,"../util/dispatcher":405,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./animation_loop":347,"./image_sprite":348,"./style_function":352,"./style_layer":353,"./style_spec":360,"./validate_style":362}],351:[function(t,e,r){"use strict";var n=t("./style_function"),i=t("./parse_color"),a=t("../util/util");e.exports=function(t,e){this.value=a.clone(e),this.isFunction=n.isFunctionDefinition(e),this.json=JSON.stringify(this.value);var r="color"===t.type&&this.value?i(this.value):e;this.calculate=n[t.function||"piecewise-constant"](r),this.isFeatureConstant=this.calculate.isFeatureConstant,this.isZoomConstant=this.calculate.isZoomConstant,"piecewise-constant"===t.function&&t.transition&&(this.calculate=(o=this.calculate,function(t,e){var r,n,i,a=t.zoom,s=t.zoomHistory,l=t.duration,c=a%1,u=Math.min((Date.now()-s.lastIntegerZoomTime)/l,1),f=1;return a>s.lastIntegerZoom?(r=c+(1-c)*u,f*=2,n=o({zoom:a-1},e),i=o({zoom:a},e)):(r=1-(1-u)*c,i=o({zoom:a},e),n=o({zoom:a+1},e),f/=2),void 0===n||void 0===i?void 0:{from:n,fromScale:f,to:i,toScale:1,t:r}}));var o;if(!this.isFeatureConstant&&!this.isZoomConstant){this.stopZoomLevels=[];for(var s=[],l=this.value.stops,c=0;c<this.value.stops.length;c++){var u=l[c][0].zoom;this.stopZoomLevels.indexOf(u)<0&&(this.stopZoomLevels.push(u),s.push([u,s.length]))}this.calculateInterpolationT=n.interpolated({stops:s,base:e.base})}}},{"../util/util":414,"./parse_color":349,"./style_function":352}],352:[function(t,e,r){"use strict";var n=t("mapbox-gl-function");r.interpolated=function(t){var e=n.interpolated(t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r["piecewise-constant"]=function(t){var e=n["piecewise-constant"](t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r.isFunctionDefinition=n.isFunctionDefinition},{"mapbox-gl-function":274}],353:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./style_transition"),a=t("./style_declaration"),o=t("./style_spec"),s=t("./validate_style"),l=t("./parse_color"),c=t("../util/evented");e.exports=u;function u(t,e){this.set(t,e)}function 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t[i])this.setPaintProperty(r,t[i][r],s)}}if(this.ref)this._layoutDeclarations=e._layoutDeclarations;else for(n in t.layout)this.setLayoutProperty(n,t.layout[n]);for(r in this._paintSpecifications)this.paint[r]=this.getPaintValue(r);for(n in this._layoutSpecifications)this._updateLayoutValue(n)},setLayoutProperty:function(t,e){if(null==e)delete this._layoutDeclarations[t];else{var r="layers."+this.id+".layout."+t;if(this._handleErrors(s.layoutProperty,r,t,e))return;this._layoutDeclarations[t]=new a(this._layoutSpecifications[t],e)}this._updateLayoutValue(t)},getLayoutProperty:function(t){return this._layoutDeclarations[t]&&this._layoutDeclarations[t].value},getLayoutValue:function(t,e,r){var n=this._layoutSpecifications[t],i=this._layoutDeclarations[t];return i?i.calculate(e,r):n.default},setPaintProperty:function(t,e,r){var i="layers."+this.id+(r?'["paint.'+r+'"].':".paint.")+t;if(n.endsWith(t,"-transition"))if(this._paintTransitionOptions[r||""]||(this._paintTransitionOptions[r||""]={}),null===e||void 0===e)delete this._paintTransitionOptions[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintTransitionOptions[r||""][t]=e}else if(this._paintDeclarations[r||""]||(this._paintDeclarations[r||""]={}),null===e||void 0===e)delete this._paintDeclarations[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintDeclarations[r||""][t]=new a(this._paintSpecifications[t],e)}},getPaintProperty:function(t,e){return e=e||"",n.endsWith(t,"-transition")?this._paintTransitionOptions[e]&&this._paintTransitionOptions[e][t]:this._paintDeclarations[e]&&this._paintDeclarations[e][t]&&this._paintDeclarations[e][t].value},getPaintValue:function(t,e,r){var n=this._paintSpecifications[t],i=this._paintTransitions[t];return i?i.calculate(e,r):"color"===n.type&&n.default?l(n.default):n.default},getPaintValueStopZoomLevels:function(t){var e=this._paintTransitions[t];return e?e.declaration.stopZoomLevels:[]},getPaintInterpolationT:function(t,e){return this._paintTransitions[t].declaration.calculateInterpolationT({zoom:e})},isPaintValueFeatureConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isFeatureConstant},isLayoutValueFeatureConstant:function(t){var e=this._layoutDeclarations[t];return!e||e.isFeatureConstant},isPaintValueZoomConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isZoomConstant},isHidden:function(t){return!!(this.minzoom&&t<this.minzoom)||(!!(this.maxzoom&&t>=this.maxzoom)||("none"===this.layout.visibility||0===this.paint[this.type+"-opacity"]))},updatePaintTransitions:function(t,e,r,i){for(var a,o=n.extend({},this._paintDeclarations[""]),s=0;s<t.length;s++)n.extend(o,this._paintDeclarations[t[s]]);for(a in o)this._applyPaintDeclaration(a,o[a],e,r,i);for(a in this._paintTransitions)a in o||this._applyPaintDeclaration(a,null,e,r,i)},updatePaintTransition:function(t,e,r,n,i){for(var a=this._paintDeclarations[""][t],o=0;o<e.length;o++){var s=this._paintDeclarations[e[o]];s&&s[t]&&(a=s[t])}this._applyPaintDeclaration(t,a,r,n,i)},recalculate:function(t,e){for(var r in this._paintTransitions)this.paint[r]=this.getPaintValue(r,{zoom:t,zoomHistory:e});for(var n in this._layoutFunctions)this.layout[n]=this.getLayoutValue(n,{zoom:t,zoomHistory:e})},serialize:function(t){var e={id:this.id,ref:this.ref,metadata:this.metadata,minzoom:this.minzoom,maxzoom:this.maxzoom};for(var r in this._paintDeclarations){e[""===r?"paint":"paint."+r]=n.mapObject(this._paintDeclarations[r],f)}return(!this.ref||t&&t.includeRefProperties)&&n.extend(e,{type:this.type,source:this.source,"source-layer":this.sourceLayer,filter:this.filter,layout:n.mapObject(this._layoutDeclarations,f)}),n.filterObject(e,function(t,e){return void 0!==t&&!("layout"===e&&!Object.keys(t).length)})},_applyPaintDeclaration:function(t,e,r,o,s){var l=r.transition?this._paintTransitions[t]:void 0,c=this._paintSpecifications[t];if(null!==e&&void 0!==e||(e=new a(c,c.default)),!l||l.declaration.json!==e.json){var u=n.extend({duration:300,delay:0},o,this.getPaintProperty(t+"-transition")),f=this._paintTransitions[t]=new i(c,e,l,u);f.instant()||(f.loopID=s.set(f.endTime-Date.now())),l&&s.cancel(l.loopID)}},_updateLayoutValue:function(t){var e=this._layoutDeclarations[t];e&&e.isFunction?this._layoutFunctions[t]=!0:(delete this._layoutFunctions[t],this.layout[t]=this.getLayoutValue(t))},_handleErrors:function(t,e,r,n){return s.emitErrors(this,t.call(s,{key:e,layerType:this.type,objectKey:r,value:n,styleSpec:o,style:{glyphs:!0,sprite:!0}}))}})},{"../util/evented":406,"../util/util":414,"./parse_color":349,"./style_declaration":351,"./style_layer/background_style_layer":354,"./style_layer/circle_style_layer":355,"./style_layer/fill_style_layer":356,"./style_layer/line_style_layer":357,"./style_layer/raster_style_layer":358,"./style_layer/symbol_style_layer":359,"./style_spec":360,"./style_transition":361,"./validate_style":362}],354:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],355:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],356:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValue.call(this,"fill-color",e,r):i.prototype.getPaintValue.call(this,t,e,r)},getPaintValueStopZoomLevels:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValueStopZoomLevels.call(this,"fill-color"):i.prototype.getPaintValueStopZoomLevels.call(this,arguments)},getPaintInterpolationT:function(t,e){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintInterpolationT.call(this,"fill-color",e):i.prototype.getPaintInterpolationT.call(this,t,e)},isPaintValueFeatureConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueFeatureConstant.call(this,"fill-color"):i.prototype.isPaintValueFeatureConstant.call(this,t)},isPaintValueZoomConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueZoomConstant.call(this,"fill-color"):i.prototype.isPaintValueZoomConstant.call(this,t)}}),e.exports=a},{"../../util/util":414,"../style_layer":353}],357:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){var n=i.prototype.getPaintValue.apply(this,arguments);if(n&&"line-dasharray"===t){var a=Math.floor(e.zoom);this._flooredZoom!==a&&(this._flooredZoom=a,this._flooredLineWidth=this.getPaintValue("line-width",e,r)),n.fromScale*=this._flooredLineWidth,n.toScale*=this._flooredLineWidth}return n}})},{"../../util/util":414,"../style_layer":353}],358:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],359:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{isHidden:function(){if(i.prototype.isHidden.apply(this,arguments))return!0;var t=0===this.paint["text-opacity"]||!this.layout["text-field"],e=0===this.paint["icon-opacity"]||!this.layout["icon-image"];return!(!t||!e)},getLayoutValue:function(t,e,r){return("text-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("text-rotation-alignment"))&&("icon-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("icon-rotation-alignment"))?"text-pitch-alignment"!==t||this.getLayoutProperty("text-pitch-alignment")?i.prototype.getLayoutValue.apply(this,arguments):this.getLayoutValue("text-rotation-alignment"):"map"}})},{"../../util/util":414,"../style_layer":353}],360:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/reference/latest.min")},{"mapbox-gl-style-spec/reference/latest.min":297}],361:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate");function a(t,e,r,a){this.declaration=e,this.startTime=this.endTime=(new Date).getTime(),"piecewise-constant"===t.function&&t.transition?this.interp=o:this.interp=i[t.type],this.oldTransition=r,this.duration=a.duration||0,this.delay=a.delay||0,this.instant()||(this.endTime=this.startTime+this.duration+this.delay,this.ease=n.easeCubicInOut),r&&r.endTime<=this.startTime&&delete r.oldTransition}function o(t,e,r){return void 0===(t&&t.to)||void 0===(e&&e.to)?void 0:{from:t.to,fromScale:t.toScale,to:e.to,toScale:e.toScale,t:r}}e.exports=a,a.prototype.instant=function(){return!this.oldTransition||!this.interp||0===this.duration&&0===this.delay},a.prototype.calculate=function(t,e){var r=this.declaration.calculate(n.extend({},t,{duration:this.duration}),e);if(this.instant())return r;var i=t.time||Date.now();if(i<this.endTime){var a=this.oldTransition.calculate(n.extend({},t,{time:this.startTime}),e),o=this.ease((i-this.startTime-this.delay)/this.duration);r=this.interp(a,r,o)}return r}},{"../util/interpolate":408,"../util/util":414}],362:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/lib/validate_style.min"),e.exports.emitErrors=function(t,e){if(e&&e.length){for(var r=0;r<e.length;r++)t.fire("error",{error:new Error(e[r].message)});return!0}return!1},e.exports.throwErrors=function(t,e){if(e)for(var r=0;r<e.length;r++)throw new Error(e[r].message)}},{"mapbox-gl-style-spec/lib/validate_style.min":296}],363:[function(t,e,r){"use strict";var n=t("point-geometry");function i(t,e,r,n){this.x=t,this.y=e,this.angle=r,void 0!==n&&(this.segment=n)}e.exports=i,i.prototype=Object.create(n.prototype),i.prototype.clone=function(){return new i(this.x,this.y,this.angle,this.segment)}},{"point-geometry":458}],364:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){if(void 0===e.segment)return!0;var a=e,o=e.segment+1,s=0;for(;s>-r/2;){if(--o<0)return!1;s-=t[o].dist(a),a=t[o]}s+=t[o].dist(t[o+1]),o++;var l=[],c=0;for(;s<r/2;){var u=t[o-1],f=t[o],h=t[o+1];if(!h)return!1;var d=u.angleTo(f)-f.angleTo(h);for(d=Math.abs((d+3*Math.PI)%(2*Math.PI)-Math.PI),l.push({distance:s,angleDelta:d}),c+=d;s-l[0].distance>n;)c-=l.shift().angleDelta;if(c>i)return!1;o++,s+=f.dist(h)}return!0}},{}],365:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports=function(t,e,r,i,a){for(var o=[],s=0;s<t.length;s++)for(var l,c=t[s],u=0;u<c.length-1;u++){var f=c[u],h=c[u+1];f.x<e&&h.x<e||(f.x<e?f=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round():h.x<e&&(h=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round()),f.y<r&&h.y<r||(f.y<r?f=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round():h.y<r&&(h=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round()),f.x>=i&&h.x>=i||(f.x>=i?f=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round():h.x>=i&&(h=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round()),f.y>=a&&h.y>=a||(f.y>=a?f=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round():h.y>=a&&(h=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round()),l&&f.equals(l[l.length-1])||(l=[f],o.push(l)),l.push(h)))))}return o}},{"point-geometry":458}],366:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int16",name:"x1"},{type:"Int16",name:"y1"},{type:"Int16",name:"x2"},{type:"Int16",name:"y2"},{type:"Float32",name:"maxScale"},{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"},{type:"Int16",name:"bbox0"},{type:"Int16",name:"bbox1"},{type:"Int16",name:"bbox2"},{type:"Int16",name:"bbox3"},{type:"Float32",name:"placementScale"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],367:[function(t,e,r){"use strict";function n(t,e,r,n,i,a,o,s,l,c,u){var f=o.top*s-l,h=o.bottom*s+l,d=o.left*s-l,p=o.right*s+l;if(this.boxStartIndex=t.length,c){var m=h-f,v=p-d;if(m>0)if(m=Math.max(10*s,m),u){var g=e[r.segment+1].sub(e[r.segment])._unit()._mult(v),y=[r.sub(g),r.add(g)];this._addLineCollisionBoxes(t,y,r,0,v,m,n,i,a)}else this._addLineCollisionBoxes(t,e,r,r.segment,v,m,n,i,a)}else t.emplaceBack(r.x,r.y,d,f,p,h,1/0,n,i,a,0,0,0,0,0);this.boxEndIndex=t.length}e.exports=n,n.prototype._addLineCollisionBoxes=function(t,e,r,n,i,a,o,s,l){var c=a/2,u=Math.floor(i/c),f=-a/2,h=this.boxes,d=r,p=n+1,m=f;do{if(--p<0)return h;m-=e[p].dist(d),d=e[p]}while(m>-i/2);for(var v=e[p].dist(e[p+1]),g=0;g<u;g++){for(var y=-i/2+g*c;m+v<y;){if(m+=v,++p+1>=e.length)return h;v=e[p].dist(e[p+1])}var b=y-m,x=e[p],_=e[p+1].sub(x)._unit()._mult(b)._add(x)._round(),w=i/2/Math.max(Math.abs(y-f)-c/2,0);t.emplaceBack(_.x,_.y,-a/2,-a/2,a/2,a/2,w,o,s,l,0,0,0,0,0)}return h}},{}],368:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../data/bucket").EXTENT,a=t("grid-index");function o(t,e,r){if("object"==typeof t){var n=t;r=e,t=n.angle,e=n.pitch,this.grid=new a(n.grid),this.ignoredGrid=new a(n.ignoredGrid)}else this.grid=new a(i,12,6),this.ignoredGrid=new a(i,12,0);this.angle=t,this.pitch=e;var o=Math.sin(t),s=Math.cos(t);if(this.rotationMatrix=[s,-o,o,s],this.reverseRotationMatrix=[s,o,-o,s],this.yStretch=1/Math.cos(e/180*Math.PI),this.yStretch=Math.pow(this.yStretch,1.3),this.collisionBoxArray=r,0===r.length){r.emplaceBack();r.emplaceBack(0,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(i,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,0,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,i,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0)}this.tempCollisionBox=r.get(0),this.edges=[r.get(1),r.get(2),r.get(3),r.get(4)]}e.exports=o,o.prototype.serialize=function(){var t={angle:this.angle,pitch:this.pitch,grid:this.grid.toArrayBuffer(),ignoredGrid:this.ignoredGrid.toArrayBuffer()};return{data:t,transferables:[t.grid,t.ignoredGrid]}},o.prototype.minScale=.25,o.prototype.maxScale=2,o.prototype.placeCollisionFeature=function(t,e,r){for(var i=this.collisionBoxArray,a=this.minScale,o=this.rotationMatrix,s=this.yStretch,l=t.boxStartIndex;l<t.boxEndIndex;l++){var c=i.get(l),u=c.anchorPoint._matMult(o),f=u.x,h=u.y,d=f+c.x1,p=h+c.y1*s,m=f+c.x2,v=h+c.y2*s;if(c.bbox0=d,c.bbox1=p,c.bbox2=m,c.bbox3=v,!e)for(var g=this.grid.query(d,p,m,v),y=0;y<g.length;y++){var b=i.get(g[y]),x=b.anchorPoint._matMult(o);if((a=this.getPlacementScale(a,u,c,x,b))>=this.maxScale)return a}if(r){var _;if(this.angle){var w=this.reverseRotationMatrix,M=new n(c.x1,c.y1).matMult(w),k=new n(c.x2,c.y1).matMult(w),A=new n(c.x1,c.y2).matMult(w),T=new n(c.x2,c.y2).matMult(w);(_=this.tempCollisionBox).anchorPointX=c.anchorPoint.x,_.anchorPointY=c.anchorPoint.y,_.x1=Math.min(M.x,k.x,A.x,T.x),_.y1=Math.min(M.y,k.x,A.x,T.x),_.x2=Math.max(M.x,k.x,A.x,T.x),_.y2=Math.max(M.y,k.x,A.x,T.x),_.maxScale=c.maxScale}else _=c;for(var E=0;E<this.edges.length;E++){var S=this.edges[E];if((a=this.getPlacementScale(a,c.anchorPoint,_,S.anchorPoint,S))>=this.maxScale)return a}}}return a},o.prototype.queryRenderedSymbols=function(t,e,r,i,a){var o={},s=[],l=this.collisionBoxArray,c=this.rotationMatrix,u=new n(t,e)._matMult(c),f=this.tempCollisionBox;f.anchorX=u.x,f.anchorY=u.y,f.x1=0,f.y1=0,f.x2=r-t,f.y2=i-e,f.maxScale=a,a=f.maxScale;for(var h=[u.x+f.x1/a,u.y+f.y1/a*this.yStretch,u.x+f.x2/a,u.y+f.y2/a*this.yStretch],d=this.grid.query(h[0],h[1],h[2],h[3]),p=this.ignoredGrid.query(h[0],h[1],h[2],h[3]),m=0;m<p.length;m++)d.push(p[m]);for(var v=0;v<d.length;v++){var g=l.get(d[v]),y=g.sourceLayerIndex,b=g.featureIndex;if(void 0===o[y]&&(o[y]={}),!o[y][b]){var x=g.anchorPoint.matMult(c);this.getPlacementScale(this.minScale,u,f,x,g)>=a&&(o[y][b]=!0,s.push(d[v]))}}return s},o.prototype.getPlacementScale=function(t,e,r,n,i){var a=e.x-n.x,o=e.y-n.y,s=(i.x1-r.x2)/a,l=(i.x2-r.x1)/a,c=(i.y1-r.y2)*this.yStretch/o,u=(i.y2-r.y1)*this.yStretch/o;(isNaN(s)||isNaN(l))&&(s=l=1),(isNaN(c)||isNaN(u))&&(c=u=1);var f=Math.min(Math.max(s,l),Math.max(c,u)),h=i.maxScale,d=r.maxScale;return f>h&&(f=h),f>d&&(f=d),f>t&&f>=i.placementScale&&(t=f),t},o.prototype.insertCollisionFeature=function(t,e,r){for(var n=r?this.ignoredGrid:this.grid,i=this.collisionBoxArray,a=t.boxStartIndex;a<t.boxEndIndex;a++){var o=i.get(a);o.placementScale=e,e<this.maxScale&&n.insert(a,o.bbox0,o.bbox1,o.bbox2,o.bbox3)}}},{"../data/bucket":301,"grid-index":254,"point-geometry":458}],369:[function(t,e,r){"use strict";var n=t("../util/interpolate"),i=t("../symbol/anchor"),a=t("./check_max_angle");e.exports=function(t,e,r,o,s,l,c,u,f){var h=o?.6*l*c:0,d=Math.max(o?o.right-o.left:0,s?s.right-s.left:0),p=0===t[0].x||t[0].x===f||0===t[0].y||t[0].y===f;e-d*c<e/4&&(e=d*c+e/4);return function t(e,r,o,s,l,c,u,f,h){var d=c/2;var p=0;for(var m=0;m<e.length-1;m++)p+=e[m].dist(e[m+1]);var v=0,g=r-o;var y=[];for(var b=0;b<e.length-1;b++){for(var x=e[b],_=e[b+1],w=x.dist(_),M=_.angleTo(x);g+o<v+w;){var k=((g+=o)-v)/w,A=n(x.x,_.x,k),T=n(x.y,_.y,k);if(A>=0&&A<h&&T>=0&&T<h&&g-d>=0&&g+d<=p){var E=new i(A,T,M,b)._round();s&&!a(e,E,c,s,l)||y.push(E)}}v+=w}f||y.length||u||(y=t(e,v/2,o,s,l,c,u,!0,h));return y}(t,p?e/2*u%e:(d/2+2*l)*c*u%e,e,h,r,d*c,p,!1,f)}},{"../symbol/anchor":363,"../util/interpolate":408,"./check_max_angle":364}],370:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/util"),a=128;function o(){this.width=a,this.height=a,this.bin=new n(this.width,this.height),this.index={},this.ids={},this.data=new Uint8Array(this.width*this.height)}e.exports=o,o.prototype.getGlyphs=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]=[]),n[e].push(r);return n},o.prototype.getRects=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]={}),n[e][r]=this.index[i];return n},o.prototype.addGlyph=function(t,e,r,n){if(!r)return null;var a=e+"#"+r.id;if(this.index[a])return this.ids[a].indexOf(t)<0&&this.ids[a].push(t),this.index[a];if(!r.bitmap)return null;var o=r.width+2*n,s=r.height+2*n,l=o+2,c=s+2;l+=4-l%4,c+=4-c%4;var u=this.bin.packOne(l,c);if(u||(this.resize(),u=this.bin.packOne(l,c)),!u)return i.warnOnce("glyph bitmap overflow"),null;this.index[a]=u,this.ids[a]=[t];for(var f=this.data,h=r.bitmap,d=0;d<s;d++)for(var p=this.width*(u.y+d+1)+u.x+1,m=o*d,v=0;v<o;v++)f[p+v]=h[m+v];return this.dirty=!0,u},o.prototype.resize=function(){var t=this.width,e=this.height;if(!(t>=2048||e>=2048)){this.texture&&(this.gl&&this.gl.deleteTexture(this.texture),this.texture=null),this.width*=4,this.height*=4,this.bin.resize(this.width,this.height);for(var r=new ArrayBuffer(this.width*this.height),n=0;n<e;n++){var i=new Uint8Array(this.data.buffer,e*n,t);new Uint8Array(r,e*n*4,t).set(i)}this.data=new Uint8Array(r)}},o.prototype.bind=function(t){this.gl=t,this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,this.width,this.height,0,t.ALPHA,t.UNSIGNED_BYTE,null))},o.prototype.updateTexture=function(t){this.bind(t),this.dirty&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.ALPHA,t.UNSIGNED_BYTE,this.data),this.dirty=!1)}},{"../util/util":414,"shelf-pack":501}],371:[function(t,e,r){"use strict";var n=t("../util/mapbox").normalizeGlyphsURL,i=t("../util/ajax").getArrayBuffer,a=t("../util/glyphs"),o=t("../symbol/glyph_atlas"),s=t("pbf");function l(t){this.url=t&&n(t),this.atlases={},this.stacks={},this.loading={}}function c(t,e,r){this.advance=t.advance,this.left=t.left-r-1,this.top=t.top+r+1,this.rect=e}e.exports=l,l.prototype.getSimpleGlyphs=function(t,e,r,n){void 0===this.stacks[t]&&(this.stacks[t]={}),void 0===this.atlases[t]&&(this.atlases[t]=new o);for(var i,a={},s=this.stacks[t],l=this.atlases[t],u={},f=0,h=0;h<e.length;h++){var d=e[h];if(s[i=Math.floor(d/256)]){var p=s[i].glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}else void 0===u[i]&&(u[i]=[],f++),u[i].push(d)}f||n(void 0,a,t);var v=function(e,i,o){if(!e)for(var s=this.stacks[t][i]=o.stacks[0],h=0;h<u[i].length;h++){var d=u[i][h],p=s.glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}--f||n(void 0,a,t)}.bind(this);for(var g in u)this.loadRange(t,g,v)},l.prototype.loadRange=function(t,e,r){if(256*e>65535)return r("glyphs > 65535 not supported");void 0===this.loading[t]&&(this.loading[t]={});var n=this.loading[t];if(n[e])n[e].push(r);else{n[e]=[r];var o=function(t,e,r,n){return n=n||"abc",r.replace("{s}",n[t.length%n.length]).replace("{fontstack}",t).replace("{range}",e)}(t,256*e+"-"+(256*e+255),this.url);i(o,function(t,r){for(var i=!t&&new a(new s(new Uint8Array(r))),o=0;o<n[e].length;o++)n[e][o](t,e,i);delete n[e]})}},l.prototype.getGlyphAtlas=function(t){return this.atlases[t]}},{"../symbol/glyph_atlas":370,"../util/ajax":397,"../util/glyphs":407,"../util/mapbox":411,pbf:451}],372:[function(t,e,r){"use strict";e.exports=function(t,e,r){var n,i={},a={},o=[],s=[],l=[],c=0;function u(n){o.push(t[n]),s.push(r[n]),l.push(e[n]),c++}function f(t,e,r){var n=a[t];return delete a[t],a[e]=n,s[n][0].pop(),s[n][0]=s[n][0].concat(r[0]),n}function h(t,e,r){var n=i[e];return delete i[e],i[t]=n,s[n][0].shift(),s[n][0]=r[0].concat(s[n][0]),n}function d(t,e,r){var n=r?e[0][e[0].length-1]:e[0][0];return t+":"+n.x+":"+n.y}for(n=0;n<t.length;n++){var p=r[n],m=e[n];if(m){var v=d(m,p),g=d(m,p,!0);if(v in a&&g in i&&a[v]!==i[g]){var y=h(v,g,p),b=f(v,g,s[y]);delete i[v],delete a[g],a[d(m,s[b],!0)]=b,s[y]=null}else v in a?f(v,g,p):g in i?h(v,g,p):(u(n),i[v]=c-1,a[g]=c-1)}else u(n)}return{features:o,textFeatures:l,geometries:s}}},{}],373:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports={getIconQuads:function(t,e,r,o,s,l,c,u,f){var h,d,p,m,v=e.image.rect,g=s.layout,y=e.left-1,b=y+v.w/e.image.pixelRatio,x=e.top-1,_=x+v.h/e.image.pixelRatio;if("none"!==g["icon-text-fit"]&&c){var w=b-y,M=_-x,k=g["text-size"]/24,A=c.left*k,T=c.right*k,E=c.top*k,S=c.bottom*k,L=T-A,C=S-E,P=g["icon-text-fit-padding"][0],z=g["icon-text-fit-padding"][1],O=g["icon-text-fit-padding"][2],D=g["icon-text-fit-padding"][3],I="width"===g["icon-text-fit"]?.5*(C-M):0,R="height"===g["icon-text-fit"]?.5*(L-w):0,N="width"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?L:w,F="height"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?C:M;h=new n(A+R-D,E+I-P),d=new n(A+R+z+N,E+I-P),p=new n(A+R+z+N,E+I+O+F),m=new n(A+R-D,E+I+O+F)}else h=new n(y,x),d=new n(b,x),p=new n(b,_),m=new n(y,_);var j=s.getLayoutValue("icon-rotate",u,f)*Math.PI/180;if(l){var B=o[t.segment];if(t.y===B.y&&t.x===B.x&&t.segment+1<o.length){var U=o[t.segment+1];j+=Math.atan2(t.y-U.y,t.x-U.x)+Math.PI}else j+=Math.atan2(t.y-B.y,t.x-B.x)}if(j){var V=Math.sin(j),q=Math.cos(j),H=[q,-V,V,q];h=h.matMult(H),d=d.matMult(H),m=m.matMult(H),p=p.matMult(H)}return[new a(new n(t.x,t.y),h,d,m,p,e.image.rect,0,0,i,1/0)]},getGlyphQuads:function(t,e,r,s,l,c){for(var u=l.layout["text-rotate"]*Math.PI/180,f=l.layout["text-keep-upright"],h=e.positionedGlyphs,d=[],p=0;p<h.length;p++){var m=h[p],v=m.glyph,g=v.rect;if(g){var y,b=(m.x+v.advance/2)*r,x=i;c?(x=o(y=[],t,b,s,t.segment,!0),f&&(x=Math.min(x,o(y,t,b,s,t.segment,!1)))):y=[{anchorPoint:new n(t.x,t.y),offset:0,angle:0,maxScale:1/0,minScale:i}];for(var _=m.x+v.left,w=m.y-v.top,M=_+g.w,k=w+g.h,A=new n(_,w),T=new n(M,w),E=new n(_,k),S=new n(M,k),L=0;L<y.length;L++){var C=y[L],P=A,z=T,O=E,D=S;if(u){var I=Math.sin(u),R=Math.cos(u),N=[R,-I,I,R];P=P.matMult(N),z=z.matMult(N),O=O.matMult(N),D=D.matMult(N)}var F=Math.max(C.minScale,x),j=(t.angle+C.offset+2*Math.PI)%(2*Math.PI),B=(C.angle+C.offset+2*Math.PI)%(2*Math.PI);d.push(new a(C.anchorPoint,P,z,O,D,g,j,B,F,C.maxScale))}}}return d},SymbolQuad:a};var i=.5;function a(t,e,r,n,i,a,o,s,l,c){this.anchorPoint=t,this.tl=e,this.tr=r,this.bl=n,this.br=i,this.tex=a,this.anchorAngle=o,this.glyphAngle=s,this.minScale=l,this.maxScale=c}function o(t,e,r,a,o,s){var l=!s;r<0&&(s=!s),s&&o++;var c=new n(e.x,e.y),u=a[o],f=1/0;r=Math.abs(r);for(var h=i;;){var d=c.dist(u),p=r/d,m=Math.atan2(u.y-c.y,u.x-c.x);if(s||(m+=Math.PI),t.push({anchorPoint:c,offset:l?Math.PI:0,minScale:p,maxScale:f,angle:(m+2*Math.PI)%(2*Math.PI)}),p<=h)break;for(c=u;c.equals(u);)if(!(u=a[o+=s?1:-1]))return p;var v=u.sub(c)._unit();c=c.sub(v._mult(d)),f=p}return h}},{"point-geometry":458}],374:[function(t,e,r){"use strict";var n=t("../util/token");e.exports=function(t,e,r){for(var i=[],a=0,o=t.length;a<o;a++){var s=n(t[a].properties,e["text-field"]);if(s){s=s.toString();var l=e["text-transform"];"uppercase"===l?s=s.toLocaleUpperCase():"lowercase"===l&&(s=s.toLocaleLowerCase());for(var c=0;c<s.length;c++)r[s.charCodeAt(c)]=!0;i[a]=s}else i[a]=null}return i}},{"../util/token":413}],375:[function(t,e,r){"use strict";function n(t,e,r,n){this.codePoint=t,this.x=e,this.y=r,this.glyph=n}e.exports={shapeText:function(t,e,r,s,l,c,u,f,h){for(var d=[],p=new function(t,e,r,n,i,a){this.positionedGlyphs=t,this.text=e,this.top=r,this.bottom=n,this.left=i,this.right=a}(d,t,h[1],h[1],h[0],h[0]),m=0,v=0;v<t.length;v++){var g=t.charCodeAt(v),y=e[g];y&&(d.push(new n(g,m,-17,y)),m+=y.advance+f)}return!!d.length&&(function(t,e,r,n,s,l,c,u){var f=null,h=0,d=0,p=0,m=0,v=t.positionedGlyphs;if(n)for(var g=0;g<v.length;g++){var y=v[g];if(y.x-=h,y.y+=r*p,y.x>n&&null!==f){var b=v[f+1].x;m=Math.max(b,m);for(var x=f+1;x<=g;x++)v[x].y+=r,v[x].x-=b;if(c){var _=f;i[v[f].codePoint]&&_--,o(v,e,d,_,c)}d=f+1,f=null,h+=b,p++}a[y.codePoint]&&(f=g)}var w=v[v.length-1],M=w.x+e[w.codePoint].advance;m=Math.max(m,M);var k=(p+1)*r;o(v,e,d,v.length-1,c),function(t,e,r,n,i,a,o,s){for(var l=(e-r)*i+s[0],c=(-n*(o+1)+.5)*a+s[1],u=0;u<t.length;u++)t[u].x+=l,t[u].y+=c}(v,c,s,l,m,r,p,u),t.top+=-l*k,t.bottom=t.top+k,t.left+=-s*m,t.right=t.left+m}(p,e,s,r,l,c,u,h),p)},shapeIcon:function(t,e){if(!t||!t.rect)return null;var r=e["icon-offset"][0],n=e["icon-offset"][1],i=r-t.width/2,a=i+t.width,o=n-t.height/2,s=o+t.height;return new function(t,e,r,n,i){this.image=t,this.top=e,this.bottom=r,this.left=n,this.right=i}(t,o,s,i,a)}};var i={32:!0,8203:!0},a={32:!0,38:!0,43:!0,45:!0,47:!0,173:!0,183:!0,8203:!0,8208:!0,8211:!0};function o(t,e,r,n,i){for(var a=e[t[n].codePoint].advance,o=(t[n].x+a)*i,s=r;s<=n;s++)t[s].x-=o}},{}],376:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/browser"),a=t("../util/util");function o(t,e){this.width=t,this.height=e,this.bin=new n(t,e),this.images={},this.data=!1,this.texture=0,this.filter=0,this.pixelRatio=1,this.dirty=!0}e.exports=o,o.prototype.allocateImage=function(t,e){var r=(t/=this.pixelRatio)+2+(4-(t+2)%4),n=(e/=this.pixelRatio)+2+(4-(e+2)%4),i=this.bin.packOne(r,n);return i||(a.warnOnce("SpriteAtlas out of space."),null)},o.prototype.getImage=function(t,e){if(this.images[t])return this.images[t];if(!this.sprite)return null;var r=this.sprite.getSpritePosition(t);if(!r.width||!r.height)return null;var n=this.allocateImage(r.width,r.height);if(!n)return null;var i=new function(t,e,r,n,i){this.rect=t,this.width=e,this.height=r,this.sdf=n,this.pixelRatio=i}(n,r.width/r.pixelRatio,r.height/r.pixelRatio,r.sdf,r.pixelRatio/this.pixelRatio);return this.images[t]=i,this.copy(n,r,e),i},o.prototype.getPosition=function(t,e){var r=this.getImage(t,e),n=r&&r.rect;if(!n)return null;var i=r.width*r.pixelRatio,a=r.height*r.pixelRatio;return{size:[r.width,r.height],tl:[(n.x+1)/this.width,(n.y+1)/this.height],br:[(n.x+1+i)/this.width,(n.y+1+a)/this.height]}},o.prototype.allocate=function(){if(!this.data){var t=Math.floor(this.width*this.pixelRatio),e=Math.floor(this.height*this.pixelRatio);this.data=new Uint32Array(t*e);for(var r=0;r<this.data.length;r++)this.data[r]=0}},o.prototype.copy=function(t,e,r){if(this.sprite.img.data){var n=new Uint32Array(this.sprite.img.data.buffer);this.allocate();var i=this.data;!function(t,e,r,n,i,a,o,s,l,c,u){var f,h,d=n*e+r,p=s*a+o;if(u)for(p-=a,h=-1;h<=c;d=((++h+c)%c+n)*e+r,p+=a)for(f=-1;f<=l;f++)i[p+f]=t[d+(f+l)%l];else for(h=0;h<c;h++,d+=e,p+=a)for(f=0;f<l;f++)i[p+f]=t[d+f]}(n,this.sprite.img.width,e.x,e.y,i,this.width*this.pixelRatio,(t.x+1)*this.pixelRatio,(t.y+1)*this.pixelRatio,e.width,e.height,r),this.dirty=!0}},o.prototype.setSprite=function(t){t&&(this.pixelRatio=i.devicePixelRatio>1?2:1,this.canvas&&(this.canvas.width=this.width*this.pixelRatio,this.canvas.height=this.height*this.pixelRatio)),this.sprite=t},o.prototype.addIcons=function(t,e){for(var r=0;r<t.length;r++)this.getImage(t[r]);e(null,this.images)},o.prototype.bind=function(t,e){var r=!1;this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),r=!0);var n=e?t.LINEAR:t.NEAREST;n!==this.filter&&(t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,n),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,n),this.filter=n),this.dirty&&(this.allocate(),r?t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width*this.pixelRatio,this.height*this.pixelRatio,0,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)):t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width*this.pixelRatio,this.height*this.pixelRatio,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)),this.dirty=!1)}},{"../util/browser":398,"../util/util":414,"shelf-pack":501}],377:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Uint16",name:"textBoxStartIndex"},{type:"Uint16",name:"textBoxEndIndex"},{type:"Uint16",name:"iconBoxStartIndex"},{type:"Uint16",name:"iconBoxEndIndex"},{type:"Uint16",name:"glyphQuadStartIndex"},{type:"Uint16",name:"glyphQuadEndIndex"},{type:"Uint16",name:"iconQuadStartIndex"},{type:"Uint16",name:"iconQuadEndIndex"},{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int8",name:"index"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],378:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=t("./quads").SymbolQuad,s=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Float32",name:"tlX"},{type:"Float32",name:"tlY"},{type:"Float32",name:"trX"},{type:"Float32",name:"trY"},{type:"Float32",name:"blX"},{type:"Float32",name:"blY"},{type:"Float32",name:"brX"},{type:"Float32",name:"brY"},{type:"Int16",name:"texH"},{type:"Int16",name:"texW"},{type:"Int16",name:"texX"},{type:"Int16",name:"texY"},{type:"Float32",name:"anchorAngle"},{type:"Float32",name:"glyphAngle"},{type:"Float32",name:"maxScale"},{type:"Float32",name:"minScale"}]});i.extendAll(s.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)},get SymbolQuad(){return new o(this.anchorPoint,new a(this.tlX,this.tlY),new a(this.trX,this.trY),new a(this.blX,this.blY),new a(this.brX,this.brY),{x:this.texX,y:this.texY,h:this.texH,w:this.texW,height:this.texH,width:this.texW},this.anchorAngle,this.glyphAngle,this.minScale,this.maxScale)}})},{"../util/struct_array":412,"../util/util":414,"./quads":373,"point-geometry":458}],379:[function(t,e,r){"use strict";var n=t("../util/dom"),i=t("point-geometry"),a={scrollZoom:t("./handler/scroll_zoom"),boxZoom:t("./handler/box_zoom"),dragRotate:t("./handler/drag_rotate"),dragPan:t("./handler/drag_pan"),keyboard:t("./handler/keyboard"),doubleClickZoom:t("./handler/dblclick_zoom"),touchZoomRotate:t("./handler/touch_zoom_rotate")};e.exports=function(t,e){var r=t.getCanvasContainer(),o=null,s=null,l=null;for(var c in a)t[c]=new a[c](t,e),e.interactive&&e[c]&&t[c].enable();function u(){l=null}function f(e,i){var a=n.mousePos(r,i);return t.fire(e,{lngLat:t.unproject(a),point:a,originalEvent:i})}function h(e,a){var o=n.touchPos(r,a),s=o.reduce(function(t,e,r,n){return t.add(e.div(n.length))},new i(0,0));return t.fire(e,{lngLat:t.unproject(s),point:s,lngLats:o.map(function(e){return t.unproject(e)},this),points:o,originalEvent:a})}r.addEventListener("mouseout",function(t){f("mouseout",t)},!1),r.addEventListener("mousedown",function(e){t.stop(),s=n.mousePos(r,e),f("mousedown",e)},!1),r.addEventListener("mouseup",function(e){var r=t.dragRotate&&t.dragRotate.isActive();o&&!r&&f("contextmenu",o);o=null,f("mouseup",e)},!1),r.addEventListener("mousemove",function(e){if(t.dragPan&&t.dragPan.isActive())return;if(t.dragRotate&&t.dragRotate.isActive())return;var n=e.toElement||e.target;for(;n&&n!==r;)n=n.parentNode;if(n!==r)return;f("mousemove",e)},!1),r.addEventListener("touchstart",function(e){if(t.stop(),h("touchstart",e),!e.touches||e.touches.length>1)return;l?(clearTimeout(l),l=null,f("dblclick",e)):l=setTimeout(u,300)},!1),r.addEventListener("touchend",function(t){h("touchend",t)},!1),r.addEventListener("touchmove",function(t){h("touchmove",t)},!1),r.addEventListener("touchcancel",function(t){h("touchcancel",t)},!1),r.addEventListener("click",function(t){n.mousePos(r,t).equals(s)&&f("click",t)},!1),r.addEventListener("dblclick",function(t){f("dblclick",t),t.preventDefault()},!1),r.addEventListener("contextmenu",function(t){o=t,t.preventDefault()},!1)}},{"../util/dom":400,"./handler/box_zoom":385,"./handler/dblclick_zoom":386,"./handler/drag_pan":387,"./handler/drag_rotate":388,"./handler/keyboard":389,"./handler/scroll_zoom":390,"./handler/touch_zoom_rotate":391,"point-geometry":458}],380:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate"),a=t("../util/browser"),o=t("../geo/lng_lat"),s=t("../geo/lng_lat_bounds"),l=t("point-geometry"),c=e.exports=function(){};n.extend(c.prototype,{getCenter:function(){return this.transform.center},setCenter:function(t,e){return this.jumpTo({center:t},e),this},panBy:function(t,e,r){return this.panTo(this.transform.center,n.extend({offset:l.convert(t).mult(-1)},e),r),this},panTo:function(t,e,r){return this.easeTo(n.extend({center:t},e),r)},getZoom:function(){return this.transform.zoom},setZoom:function(t,e){return this.jumpTo({zoom:t},e),this},zoomTo:function(t,e,r){return this.easeTo(n.extend({zoom:t},e),r)},zoomIn:function(t,e){return this.zoomTo(this.getZoom()+1,t,e),this},zoomOut:function(t,e){return this.zoomTo(this.getZoom()-1,t,e),this},getBearing:function(){return this.transform.bearing},setBearing:function(t,e){return this.jumpTo({bearing:t},e),this},rotateTo:function(t,e,r){return this.easeTo(n.extend({bearing:t},e),r)},resetNorth:function(t,e){return this.rotateTo(0,n.extend({duration:1e3},t),e),this},snapToNorth:function(t,e){return Math.abs(this.getBearing())<this._bearingSnap?this.resetNorth(t,e):this},getPitch:function(){return this.transform.pitch},setPitch:function(t,e){return this.jumpTo({pitch:t},e),this},fitBounds:function(t,e,r){e=n.extend({padding:0,offset:[0,0],maxZoom:1/0},e),t=s.convert(t);var i=l.convert(e.offset),a=this.transform,o=a.project(t.getNorthWest()),c=a.project(t.getSouthEast()),u=c.sub(o),f=(a.width-2*e.padding-2*Math.abs(i.x))/u.x,h=(a.height-2*e.padding-2*Math.abs(i.y))/u.y;return e.center=a.unproject(o.add(c).div(2)),e.zoom=Math.min(a.scaleZoom(a.scale*Math.min(f,h)),e.maxZoom),e.bearing=0,e.linear?this.easeTo(e,r):this.flyTo(e,r)},jumpTo:function(t,e){this.stop();var r=this.transform,n=!1,i=!1,a=!1;return"zoom"in t&&r.zoom!==+t.zoom&&(n=!0,r.zoom=+t.zoom),"center"in t&&(r.center=o.convert(t.center)),"bearing"in t&&r.bearing!==+t.bearing&&(i=!0,r.bearing=+t.bearing),"pitch"in t&&r.pitch!==+t.pitch&&(a=!0,r.pitch=+t.pitch),this.fire("movestart",e).fire("move",e),n&&this.fire("zoomstart",e).fire("zoom",e).fire("zoomend",e),i&&this.fire("rotate",e),a&&this.fire("pitch",e),this.fire("moveend",e)},easeTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],duration:500,easing:n.ease},t);var r,a,s=this.transform,c=l.convert(t.offset),u=this.getZoom(),f=this.getBearing(),h=this.getPitch(),d="zoom"in t?+t.zoom:u,p="bearing"in t?this._normalizeBearing(t.bearing,f):f,m="pitch"in t?+t.pitch:h;"center"in t?(r=o.convert(t.center),a=s.centerPoint.add(c)):"around"in t?(r=o.convert(t.around),a=s.locationPoint(r)):(a=s.centerPoint.add(c),r=s.pointLocation(a));var v=s.locationPoint(r);return!1===t.animate&&(t.duration=0),this.zooming=d!==u,this.rotating=f!==p,this.pitching=m!==h,t.noMoveStart||this.fire("movestart",e),this.zooming&&this.fire("zoomstart",e),clearTimeout(this._onEaseEnd),this._ease(function(t){this.zooming&&(s.zoom=i(u,d,t)),this.rotating&&(s.bearing=i(f,p,t)),this.pitching&&(s.pitch=i(h,m,t)),s.setLocationAtPoint(r,v.add(a.sub(v)._mult(t))),this.fire("move",e),this.zooming&&this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){t.delayEndEvents?this._onEaseEnd=setTimeout(this._easeToEnd.bind(this,e),t.delayEndEvents):this._easeToEnd(e)}.bind(this),t),this},_easeToEnd:function(t){var e=this.zooming;this.zooming=!1,this.rotating=!1,this.pitching=!1,e&&this.fire("zoomend",t),this.fire("moveend",t)},flyTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],speed:1.2,curve:1.42,easing:n.ease},t);var r=this.transform,a=l.convert(t.offset),s=this.getZoom(),c=this.getBearing(),u=this.getPitch(),f="center"in t?o.convert(t.center):this.getCenter(),h="zoom"in t?+t.zoom:s,d="bearing"in t?this._normalizeBearing(t.bearing,c):c,p="pitch"in t?+t.pitch:u;Math.abs(r.center.lng)+Math.abs(f.lng)>180&&(r.center.lng>0&&f.lng<0?f.lng+=360:r.center.lng<0&&f.lng>0&&(f.lng-=360));var m=r.zoomScale(h-s),v=r.point,g="center"in t?r.project(f).sub(a.div(m)):v,y=r.worldSize,b=t.curve,x=Math.max(r.width,r.height),_=x/m,w=g.sub(v).mag();if("minZoom"in t){var M=n.clamp(Math.min(t.minZoom,s,h),r.minZoom,r.maxZoom),k=x/r.zoomScale(M-s);b=Math.sqrt(k/w*2)}var A=b*b;function T(t){var e=(_*_-x*x+(t?-1:1)*A*A*w*w)/(2*(t?_:x)*A*w);return Math.log(Math.sqrt(e*e+1)-e)}function E(t){return(Math.exp(t)-Math.exp(-t))/2}function S(t){return(Math.exp(t)+Math.exp(-t))/2}var L=T(0),C=function(t){return S(L)/S(L+b*t)},P=function(t){return x*((S(L)*(E(e=L+b*t)/S(e))-E(L))/A)/w;var e},z=(T(1)-L)/b;if(Math.abs(w)<1e-6){if(Math.abs(x-_)<1e-6)return this.easeTo(t);var O=_<x?-1:1;z=Math.abs(Math.log(_/x))/b,P=function(){return 0},C=function(t){return Math.exp(O*b*t)}}if("duration"in t)t.duration=+t.duration;else{var D="screenSpeed"in t?+t.screenSpeed/b:+t.speed;t.duration=1e3*z/D}return this.zooming=!0,c!==d&&(this.rotating=!0),u!==p&&(this.pitching=!0),this.fire("movestart",e),this.fire("zoomstart",e),this._ease(function(t){var n=t*z,a=P(n);r.zoom=s+r.scaleZoom(1/C(n)),r.center=r.unproject(v.add(g.sub(v).mult(a)),y),this.rotating&&(r.bearing=i(c,d,t)),this.pitching&&(r.pitch=i(u,p,t)),this.fire("move",e),this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){this.zooming=!1,this.rotating=!1,this.pitching=!1,this.fire("zoomend",e),this.fire("moveend",e)},t),this},isEasing:function(){return!!this._abortFn},stop:function(){return this._abortFn&&(this._abortFn(),this._finishEase()),this},_ease:function(t,e,r){this._finishFn=e,this._abortFn=a.timed(function(e){t.call(this,r.easing(e)),1===e&&this._finishEase()},!1===r.animate?0:r.duration,this)},_finishEase:function(){delete this._abortFn;var t=this._finishFn;delete this._finishFn,t.call(this)},_normalizeBearing:function(t,e){t=n.wrap(t,-180,180);var r=Math.abs(t-e);return Math.abs(t-360-e)<r&&(t-=360),Math.abs(t+360-e)<r&&(t+=360),t},_updateEasing:function(t,e,r){var i;if(this.ease){var a=this.ease,o=(Date.now()-a.start)/a.duration,s=a.easing(o+.01)-a.easing(o),l=.27/Math.sqrt(s*s+1e-4)*.01,c=Math.sqrt(.0729-l*l);i=n.bezier(l,c,.25,1)}else i=r?n.bezier.apply(n,r):n.ease;return this.ease={start:(new Date).getTime(),to:Math.pow(2,e),duration:t,easing:i},i}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../util/browser":398,"../util/interpolate":408,"../util/util":414,"point-geometry":458}],381:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}e.exports=o,o.createAttributionString=function(t){var e=[];for(var r in t){var n=t[r];n.attribution&&e.indexOf(n.attribution)<0&&e.push(n.attribution)}return e.sort(function(t,e){return t.length-e.length}),(e=e.filter(function(t,r){for(var n=r+1;n<e.length;n++)if(e[n].indexOf(t)>=0)return!1;return!0})).join(" | ")},o.prototype=a.inherit(n,{options:{position:"bottom-right"},onAdd:function(t){var e=this._container=i.create("div","mapboxgl-ctrl-attrib",t.getContainer());return this._update(),t.on("source.load",this._update.bind(this)),t.on("source.change",this._update.bind(this)),t.on("source.remove",this._update.bind(this)),t.on("moveend",this._updateEditLink.bind(this)),e},_update:function(){this._map.style&&(this._container.innerHTML=o.createAttributionString(this._map.style.sources)),this._editLink=this._container.getElementsByClassName("mapbox-improve-map")[0],this._updateEditLink()},_updateEditLink:function(){if(this._editLink){var t=this._map.getCenter();this._editLink.href="https://www.mapbox.com/map-feedback/#/"+t.lng+"/"+t.lat+"/"+Math.round(this._map.getZoom()+1)}}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],382:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../../util/evented");function a(){}e.exports=a,a.prototype={addTo:function(t){this._map=t;var e=this._container=this.onAdd(t);if(this.options&&this.options.position){var r=this.options.position,n=t._controlCorners[r];e.className+=" mapboxgl-ctrl",-1!==r.indexOf("bottom")?n.insertBefore(e,n.firstChild):n.appendChild(e)}return this},remove:function(){return this._container.parentNode.removeChild(this._container),this.onRemove&&this.onRemove(this._map),this._map=null,this}},n.extend(a.prototype,i)},{"../../util/evented":406,"../../util/util":414}],383:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/browser"),a=t("../../util/dom"),o=t("../../util/util");e.exports=l;var s={enableHighAccuracy:!1,timeout:6e3};function l(t){o.setOptions(this,t)}l.prototype=o.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e=this._container=a.create("div","mapboxgl-ctrl-group",t.getContainer());return i.supportsGeolocation?(this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._geolocateButton=a.create("button","mapboxgl-ctrl-icon mapboxgl-ctrl-geolocate",this._container),this._geolocateButton.type="button",this._geolocateButton.addEventListener("click",this._onClickGeolocate.bind(this)),e):e},_onContextMenu:function(t){t.preventDefault()},_onClickGeolocate:function(){navigator.geolocation.getCurrentPosition(this._success.bind(this),this._error.bind(this),s),this._timeoutId=setTimeout(this._finish.bind(this),1e4)},_success:function(t){this._map.jumpTo({center:[t.coords.longitude,t.coords.latitude],zoom:17,bearing:0,pitch:0}),this.fire("geolocate",t),this._finish()},_error:function(t){this.fire("error",t),this._finish()},_finish:function(){this._timeoutId&&clearTimeout(this._timeoutId),this._timeoutId=void 0}})},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414,"./control":382}],384:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}function s(t){return new MouseEvent(t.type,{button:2,buttons:2,bubbles:!0,cancelable:!0,detail:t.detail,view:t.view,screenX:t.screenX,screenY:t.screenY,clientX:t.clientX,clientY:t.clientY,movementX:t.movementX,movementY:t.movementY,ctrlKey:t.ctrlKey,shiftKey:t.shiftKey,altKey:t.altKey,metaKey:t.metaKey})}e.exports=o,o.prototype=a.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e="mapboxgl-ctrl",r=this._container=i.create("div",e+"-group",t.getContainer());return this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._zoomInButton=this._createButton(e+"-icon "+e+"-zoom-in",t.zoomIn.bind(t)),this._zoomOutButton=this._createButton(e+"-icon "+e+"-zoom-out",t.zoomOut.bind(t)),this._compass=this._createButton(e+"-icon "+e+"-compass",t.resetNorth.bind(t)),this._compassArrow=i.create("div","arrow",this._compass),this._compass.addEventListener("mousedown",this._onCompassDown.bind(this)),this._onCompassMove=this._onCompassMove.bind(this),this._onCompassUp=this._onCompassUp.bind(this),t.on("rotate",this._rotateCompassArrow.bind(this)),this._rotateCompassArrow(),this._el=t.getCanvasContainer(),r},_onContextMenu:function(t){t.preventDefault()},_onCompassDown:function(t){0===t.button&&(i.disableDrag(),document.addEventListener("mousemove",this._onCompassMove),document.addEventListener("mouseup",this._onCompassUp),this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassMove:function(t){0===t.button&&(this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassUp:function(t){0===t.button&&(document.removeEventListener("mousemove",this._onCompassMove),document.removeEventListener("mouseup",this._onCompassUp),i.enableDrag(),this._el.dispatchEvent(s(t)),t.stopPropagation())},_createButton:function(t,e){var r=i.create("button",t,this._container);return r.type="button",r.addEventListener("click",function(){e()}),r},_rotateCompassArrow:function(){var t="rotate("+this._map.transform.angle*(180/Math.PI)+"deg)";this._compassArrow.style.transform=t}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],385:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../geo/lng_lat_bounds"),a=t("../../util/util");function o(t){this._map=t,this._el=t.getCanvasContainer(),this._container=t.getContainer(),a.bindHandlers(this)}e.exports=o,o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onMouseDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onMouseDown),this._enabled=!1)},_onMouseDown:function(t){t.shiftKey&&0===t.button&&(document.addEventListener("mousemove",this._onMouseMove,!1),document.addEventListener("keydown",this._onKeyDown,!1),document.addEventListener("mouseup",this._onMouseUp,!1),n.disableDrag(),this._startPos=n.mousePos(this._el,t),this._active=!0)},_onMouseMove:function(t){var e=this._startPos,r=n.mousePos(this._el,t);this._box||(this._box=n.create("div","mapboxgl-boxzoom",this._container),this._container.classList.add("mapboxgl-crosshair"),this._fireEvent("boxzoomstart",t));var i=Math.min(e.x,r.x),a=Math.max(e.x,r.x),o=Math.min(e.y,r.y),s=Math.max(e.y,r.y);n.setTransform(this._box,"translate("+i+"px,"+o+"px)"),this._box.style.width=a-i+"px",this._box.style.height=s-o+"px"},_onMouseUp:function(t){if(0===t.button){var e=this._startPos,r=n.mousePos(this._el,t),a=new i(this._map.unproject(e),this._map.unproject(r));this._finish(),e.x===r.x&&e.y===r.y?this._fireEvent("boxzoomcancel",t):this._map.fitBounds(a,{linear:!0}).fire("boxzoomend",{originalEvent:t,boxZoomBounds:a})}},_onKeyDown:function(t){27===t.keyCode&&(this._finish(),this._fireEvent("boxzoomcancel",t))},_finish:function(){this._active=!1,document.removeEventListener("mousemove",this._onMouseMove,!1),document.removeEventListener("keydown",this._onKeyDown,!1),document.removeEventListener("mouseup",this._onMouseUp,!1),this._container.classList.remove("mapboxgl-crosshair"),this._box&&(this._box.parentNode.removeChild(this._box),this._box=null),n.enableDrag()},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})}}},{"../../geo/lng_lat_bounds":312,"../../util/dom":400,"../../util/util":414}],386:[function(t,e,r){"use strict";function n(t){this._map=t,this._onDblClick=this._onDblClick.bind(this)}e.exports=n,n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._map.on("dblclick",this._onDblClick),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._map.off("dblclick",this._onDblClick),this._enabled=!1)},_onDblClick:function(t){this._map.zoomTo(this._map.getZoom()+(t.originalEvent.shiftKey?-1:1),{around:t.lngLat},t)}}},{}],387:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.3,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._el.addEventListener("touchstart",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._el.removeEventListener("touchstart",this._onDown),this._enabled=!1)},_onDown:function(t){this._ignoreEvent(t)||this.isActive()||(t.touches?(document.addEventListener("touchmove",this._onMove),document.addEventListener("touchend",this._onTouchEnd)):(document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onMouseUp)),this._active=!1,this._startPos=this._pos=n.mousePos(this._el,t),this._inertia=[[Date.now(),this._pos]])},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("dragstart",t),this._fireEvent("movestart",t));var e=n.mousePos(this._el,t),r=this._map;r.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),e]),r.transform.setLocationAtPoint(r.transform.pointLocation(this._pos),e),this._fireEvent("drag",t),this._fireEvent("move",t),this._pos=e,t.preventDefault()}},_onUp:function(t){if(this.isActive()){this._active=!1,this._fireEvent("dragend",t),this._drainInertiaBuffer();var e=function(){this._fireEvent("moveend",t)}.bind(this),r=this._inertia;if(r.length<2)e();else{var n=r[r.length-1],i=r[0],o=n[1].sub(i[1]),s=(n[0]-i[0])/1e3;if(0===s||n[1].equals(i[1]))e();else{var l=o.mult(.3/s),c=l.mag();c>1400&&(c=1400,l._unit()._mult(c));var u=c/750,f=l.mult(-u/2);this._map.panBy(f,{duration:1e3*u,easing:a,noMoveStart:!0},{originalEvent:t})}}}},_onMouseUp:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onMouseUp))},_onTouchEnd:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onTouchEnd))},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragRotate&&e.dragRotate.isActive())return!0;if(t.touches)return t.touches.length>1;if(t.ctrlKey)return!0;return"mousemove"===t.type?!1&t.buttons:0!==t.button},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],388:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("point-geometry"),a=t("../../util/util");e.exports=s;var o=a.bezier(0,0,.25,1);function s(t,e){this._map=t,this._el=t.getCanvasContainer(),this._bearingSnap=e.bearingSnap,a.bindHandlers(this)}s.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._enabled=!1)},_onDown:function(t){if(!this._ignoreEvent(t)&&!this.isActive()){document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onUp),this._active=!1,this._inertia=[[Date.now(),this._map.getBearing()]],this._startPos=this._pos=n.mousePos(this._el,t),this._center=this._map.transform.centerPoint;var e=this._startPos.sub(this._center);e.mag()<200&&(this._center=this._startPos.add(new i(-200,0)._rotate(e.angle()))),t.preventDefault()}},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("rotatestart",t),this._fireEvent("movestart",t));var e=this._map;e.stop();var r=this._pos,i=n.mousePos(this._el,t),a=this._center,o=r.sub(a).angleWith(i.sub(a))/Math.PI*180,s=e.getBearing()-o,l=this._inertia,c=l[l.length-1];this._drainInertiaBuffer(),l.push([Date.now(),e._normalizeBearing(s,c[1])]),e.transform.bearing=s,this._fireEvent("rotate",t),this._fireEvent("move",t),this._pos=i}},_onUp:function(t){if(!this._ignoreEvent(t)&&(document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onUp),this.isActive())){this._active=!1,this._fireEvent("rotateend",t),this._drainInertiaBuffer();var e=this._map,r=e.getBearing(),n=this._inertia,i=function(){Math.abs(r)<this._bearingSnap?e.resetNorth({noMoveStart:!0},{originalEvent:t}):this._fireEvent("moveend",t)}.bind(this);if(n.length<2)i();else{var a=n[0],s=n[n.length-1],l=n[n.length-2],c=e._normalizeBearing(r,l[1]),u=s[1]-a[1],f=u<0?-1:1,h=(s[0]-a[0])/1e3;if(0!==u&&0!==h){var d=Math.abs(u*(.25/h));d>180&&(d=180);var p=d/180;c+=f*d*(p/2),Math.abs(e._normalizeBearing(c,0))<this._bearingSnap&&(c=e._normalizeBearing(0,c)),e.rotateTo(c,{duration:1e3*p,easing:o,noMoveStart:!0},{originalEvent:t})}else i()}}},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragPan&&e.dragPan.isActive())return!0;if(t.touches)return t.touches.length>1;var r=t.ctrlKey?1:2,n=t.ctrlKey?0:2;return"mousemove"===t.type?t.buttons&0===r:t.button!==n},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414,"point-geometry":458}],389:[function(t,e,r){"use strict";e.exports=n;function n(t){this._map=t,this._el=t.getCanvasContainer(),this._onKeyDown=this._onKeyDown.bind(this)}n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("keydown",this._onKeyDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("keydown",this._onKeyDown),this._enabled=!1)},_onKeyDown:function(t){if(!(t.altKey||t.ctrlKey||t.metaKey)){var e=this._map,r={originalEvent:t};if(!e.isEasing())switch(t.keyCode){case 61:case 107:case 171:case 187:e.zoomTo(Math.round(e.getZoom())+(t.shiftKey?2:1),r);break;case 189:case 109:case 173:e.zoomTo(Math.round(e.getZoom())-(t.shiftKey?2:1),r);break;case 37:t.shiftKey?e.easeTo({bearing:e.getBearing()-2},r):(t.preventDefault(),e.panBy([-80,0],r));break;case 39:t.shiftKey?e.easeTo({bearing:e.getBearing()+2},r):(t.preventDefault(),e.panBy([80,0],r));break;case 38:t.shiftKey?e.easeTo({pitch:e.getPitch()+5},r):(t.preventDefault(),e.panBy([0,-80],r));break;case 40:t.shiftKey?e.easeTo({pitch:Math.max(e.getPitch()-5,0)},r):(t.preventDefault(),e.panBy([0,80],r))}}}}},{}],390:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/browser"),a=t("../../util/util");e.exports=c;var o="undefined"!=typeof navigator?navigator.userAgent.toLowerCase():"",s=-1!==o.indexOf("firefox"),l=-1!==o.indexOf("safari")&&-1===o.indexOf("chrom");function c(t){this._map=t,this._el=t.getCanvasContainer(),a.bindHandlers(this)}c.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("wheel",this._onWheel,!1),this._el.addEventListener("mousewheel",this._onWheel,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("wheel",this._onWheel),this._el.removeEventListener("mousewheel",this._onWheel),this._enabled=!1)},_onWheel:function(t){var e;"wheel"===t.type?(e=t.deltaY,s&&t.deltaMode===window.WheelEvent.DOM_DELTA_PIXEL&&(e/=i.devicePixelRatio),t.deltaMode===window.WheelEvent.DOM_DELTA_LINE&&(e*=40)):"mousewheel"===t.type&&(e=-t.wheelDeltaY,l&&(e/=3));var r=i.now(),a=r-(this._time||0);this._pos=n.mousePos(this._el,t),this._time=r,0!==e&&e%4.000244140625==0?(this._type="wheel",e=Math.floor(e/4)):0!==e&&Math.abs(e)<4?this._type="trackpad":a>400?(this._type=null,this._lastValue=e,this._timeout=setTimeout(this._onTimeout,40)):this._type||(this._type=Math.abs(a*e)<200?"trackpad":"wheel",this._timeout&&(clearTimeout(this._timeout),this._timeout=null,e+=this._lastValue)),t.shiftKey&&e&&(e/=4),this._type&&this._zoom(-e,t),t.preventDefault()},_onTimeout:function(){this._type="wheel",this._zoom(-this._lastValue)},_zoom:function(t,e){if(0!==t){var r=this._map,n=2/(1+Math.exp(-Math.abs(t/100)));t<0&&0!==n&&(n=1/n);var i=r.ease?r.ease.to:r.transform.scale,a=r.transform.scaleZoom(i*n);r.zoomTo(a,{duration:0,around:r.unproject(this._pos),delayEndEvents:200},{originalEvent:e})}}}},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414}],391:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.15,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("touchstart",this._onStart,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("touchstart",this._onStart),this._enabled=!1)},disableRotation:function(){this._rotationDisabled=!0},enableRotation:function(){this._rotationDisabled=!1},_onStart:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]);this._startVec=e.sub(r),this._startScale=this._map.transform.scale,this._startBearing=this._map.transform.bearing,this._gestureIntent=void 0,this._inertia=[],document.addEventListener("touchmove",this._onMove,!1),document.addEventListener("touchend",this._onEnd,!1)}},_onMove:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]),i=e.add(r).div(2),a=e.sub(r),o=a.mag()/this._startVec.mag(),s=this._rotationDisabled?0:180*a.angleWith(this._startVec)/Math.PI,l=this._map;if(this._gestureIntent){var c={duration:0,around:l.unproject(i)};"rotate"===this._gestureIntent&&(c.bearing=this._startBearing+s),"zoom"!==this._gestureIntent&&"rotate"!==this._gestureIntent||(c.zoom=l.transform.scaleZoom(this._startScale*o)),l.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),o,i]),l.easeTo(c,{originalEvent:t})}else{var u=Math.abs(1-o)>.15;Math.abs(s)>4?this._gestureIntent="rotate":u&&(this._gestureIntent="zoom"),this._gestureIntent&&(this._startVec=a,this._startScale=l.transform.scale,this._startBearing=l.transform.bearing)}t.preventDefault()}},_onEnd:function(t){document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onEnd),this._drainInertiaBuffer();var e=this._inertia,r=this._map;if(e.length<2)r.snapToNorth({},{originalEvent:t});else{var n=e[e.length-1],i=e[0],o=r.transform.scaleZoom(this._startScale*n[1]),s=r.transform.scaleZoom(this._startScale*i[1]),l=o-s,c=(n[0]-i[0])/1e3,u=n[2];if(0!==c&&o!==s){var f=.15*l/c;Math.abs(f)>2.5&&(f=f>0?2.5:-2.5);var h=1e3*Math.abs(f/(12*.15)),d=o+f*h/2e3;d<0&&(d=0),r.easeTo({zoom:d,duration:h,easing:a,around:r.unproject(u)},{originalEvent:t})}else r.snapToNorth({},{originalEvent:t})}},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>2&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],392:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util");function i(){n.bindAll(["_onHashChange","_updateHash"],this)}i.prototype={addTo:function(t){return this._map=t,window.addEventListener("hashchange",this._onHashChange,!1),this._map.on("moveend",this._updateHash),this},remove:function(){return window.removeEventListener("hashchange",this._onHashChange,!1),this._map.off("moveend",this._updateHash),delete this._map,this},_onHashChange:function(){var t=location.hash.replace("#","").split("/");return t.length>=3&&(this._map.jumpTo({center:[+t[2],+t[1]],zoom:+t[0],bearing:+(t[3]||0)}),!0)},_updateHash:function(){var t=this._map.getCenter(),e=this._map.getZoom(),r=this._map.getBearing(),n=Math.max(0,Math.ceil(Math.log(e)/Math.LN2)),i="#"+Math.round(100*e)/100+"/"+t.lat.toFixed(n)+"/"+t.lng.toFixed(n)+(r?"/"+Math.round(10*r)/10:"");window.history.replaceState("","",i)}}},{"../util/util":414}],393:[function(t,e,r){"use strict";var n=t("../util/canvas"),i=t("../util/util"),a=t("../util/browser"),o=t("../util/browser").window,s=t("../util/evented"),l=t("../util/dom"),c=t("../style/style"),u=t("../style/animation_loop"),f=t("../render/painter"),h=t("../geo/transform"),d=t("./hash"),p=t("./bind_handlers"),m=t("./camera"),v=t("../geo/lng_lat"),g=t("../geo/lng_lat_bounds"),y=t("point-geometry"),b=t("./control/attribution"),x={center:[0,0],zoom:0,bearing:0,pitch:0,minZoom:0,maxZoom:20,interactive:!0,scrollZoom:!0,boxZoom:!0,dragRotate:!0,dragPan:!0,keyboard:!0,doubleClickZoom:!0,touchZoomRotate:!0,bearingSnap:7,hash:!1,attributionControl:!0,failIfMajorPerformanceCaveat:!1,preserveDrawingBuffer:!1,trackResize:!0,workerCount:Math.max(a.hardwareConcurrency-1,1)},_=e.exports=function(t){if((t=i.extend({},x,t)).workerCount<1)throw new Error("workerCount must an integer greater than or equal to 1.");this._interactive=t.interactive,this._failIfMajorPerformanceCaveat=t.failIfMajorPerformanceCaveat,this._preserveDrawingBuffer=t.preserveDrawingBuffer,this._trackResize=t.trackResize,this._workerCount=t.workerCount,this._bearingSnap=t.bearingSnap,"string"==typeof t.container?this._container=document.getElementById(t.container):this._container=t.container,this.animationLoop=new u,this.transform=new h(t.minZoom,t.maxZoom),t.maxBounds&&this.setMaxBounds(t.maxBounds),i.bindAll(["_forwardStyleEvent","_forwardSourceEvent","_forwardLayerEvent","_forwardTileEvent","_onStyleLoad","_onStyleChange","_onSourceAdd","_onSourceRemove","_onSourceUpdate","_onWindowOnline","_onWindowResize","_update","_render"],this),this._setupContainer(),this._setupPainter(),this.on("move",this._update.bind(this,!1)),this.on("zoom",this._update.bind(this,!0)),this.on("moveend",function(){this.animationLoop.set(300),this._rerender()}.bind(this)),void 0!==o&&(o.addEventListener("online",this._onWindowOnline,!1),o.addEventListener("resize",this._onWindowResize,!1)),p(this,t),this._hash=t.hash&&(new d).addTo(this),this._hash&&this._hash._onHashChange()||this.jumpTo({center:t.center,zoom:t.zoom,bearing:t.bearing,pitch:t.pitch}),this.stacks={},this._classes=[],this.resize(),t.classes&&this.setClasses(t.classes),t.style&&this.setStyle(t.style),t.attributionControl&&this.addControl(new b(t.attributionControl));var e=this.fire.bind(this,"error");this.on("style.error",e),this.on("source.error",e),this.on("tile.error",e),this.on("layer.error",e)};function w(t){t.parentNode&&t.parentNode.removeChild(t)}i.extend(_.prototype,s),i.extend(_.prototype,m.prototype),i.extend(_.prototype,{addControl:function(t){return t.addTo(this),this},addClass:function(t,e){return this._classes.indexOf(t)>=0||""===t?this:(this._classes.push(t),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},removeClass:function(t,e){var r=this._classes.indexOf(t);return r<0||""===t?this:(this._classes.splice(r,1),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},setClasses:function(t,e){for(var r={},n=0;n<t.length;n++)""!==t[n]&&(r[t[n]]=!0);return this._classes=Object.keys(r),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0)},hasClass:function(t){return this._classes.indexOf(t)>=0},getClasses:function(){return this._classes},resize:function(){var t=0,e=0;return this._container&&(t=this._container.offsetWidth||400,e=this._container.offsetHeight||300),this._canvas.resize(t,e),this.transform.resize(t,e),this.painter.resize(t,e),this.fire("movestart").fire("move").fire("resize").fire("moveend")},getBounds:function(){var t=new g(this.transform.pointLocation(new y(0,0)),this.transform.pointLocation(this.transform.size));return(this.transform.angle||this.transform.pitch)&&(t.extend(this.transform.pointLocation(new y(this.transform.size.x,0))),t.extend(this.transform.pointLocation(new y(0,this.transform.size.y)))),t},setMaxBounds:function(t){if(t){var e=g.convert(t);this.transform.lngRange=[e.getWest(),e.getEast()],this.transform.latRange=[e.getSouth(),e.getNorth()],this.transform._constrain(),this._update()}else null!==t&&void 0!==t||(this.transform.lngRange=[],this.transform.latRange=[],this._update());return this},setMinZoom:function(t){if((t=null===t||void 0===t?0:t)>=0&&t<=this.transform.maxZoom)return this.transform.minZoom=t,this._update(),this.getZoom()<t&&this.setZoom(t),this;throw new Error("minZoom must be between 0 and the current maxZoom, inclusive")},setMaxZoom:function(t){if((t=null===t||void 0===t?20:t)>=this.transform.minZoom&&t<=20)return this.transform.maxZoom=t,this._update(),this.getZoom()>t&&this.setZoom(t),this;throw new Error("maxZoom must be between the current minZoom and 20, inclusive")},project:function(t){return this.transform.locationPoint(v.convert(t))},unproject:function(t){return this.transform.pointLocation(y.convert(t))},queryRenderedFeatures:function(){var t,e,r={};return 2===arguments.length?(t=arguments[0],r=arguments[1]):1===arguments.length&&((e=arguments[0])instanceof y||Array.isArray(e))?t=arguments[0]:1===arguments.length&&(r=arguments[0]),this.style.queryRenderedFeatures(this._makeQueryGeometry(t),r,this.transform.zoom,this.transform.angle)},_makeQueryGeometry:function(t){var e;if(void 0===t&&(t=[y.convert([0,0]),y.convert([this.transform.width,this.transform.height])]),t instanceof y||"number"==typeof t[0]){e=[y.convert(t)]}else{var r=[y.convert(t[0]),y.convert(t[1])];e=[r[0],new y(r[1].x,r[0].y),r[1],new y(r[0].x,r[1].y),r[0]]}return e=e.map(function(t){return this.transform.pointCoordinate(t)}.bind(this))},querySourceFeatures:function(t,e){return this.style.querySourceFeatures(t,e)},setStyle:function(t){return this.style&&(this.style.off("load",this._onStyleLoad).off("error",this._forwardStyleEvent).off("change",this._onStyleChange).off("source.add",this._onSourceAdd).off("source.remove",this._onSourceRemove).off("source.load",this._onSourceUpdate).off("source.error",this._forwardSourceEvent).off("source.change",this._onSourceUpdate).off("layer.add",this._forwardLayerEvent).off("layer.remove",this._forwardLayerEvent).off("layer.error",this._forwardLayerEvent).off("tile.add",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.load",this._update).off("tile.error",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent)._remove(),this.off("rotate",this.style._redoPlacement),this.off("pitch",this.style._redoPlacement)),t?(this.style=t instanceof c?t:new c(t,this.animationLoop,this._workerCount),this.style.on("load",this._onStyleLoad).on("error",this._forwardStyleEvent).on("change",this._onStyleChange).on("source.add",this._onSourceAdd).on("source.remove",this._onSourceRemove).on("source.load",this._onSourceUpdate).on("source.error",this._forwardSourceEvent).on("source.change",this._onSourceUpdate).on("layer.add",this._forwardLayerEvent).on("layer.remove",this._forwardLayerEvent).on("layer.error",this._forwardLayerEvent).on("tile.add",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.load",this._update).on("tile.error",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this.on("rotate",this.style._redoPlacement),this.on("pitch",this.style._redoPlacement),this):(this.style=null,this)},getStyle:function(){if(this.style)return this.style.serialize()},addSource:function(t,e){return this.style.addSource(t,e),this._update(!0),this},addSourceType:function(t,e,r){return this.style.addSourceType(t,e,r)},removeSource:function(t){return this.style.removeSource(t),this._update(!0),this},getSource:function(t){return this.style.getSource(t)},addLayer:function(t,e){return this.style.addLayer(t,e),this._update(!0),this},removeLayer:function(t){return this.style.removeLayer(t),this._update(!0),this},getLayer:function(t){return this.style.getLayer(t)},setFilter:function(t,e){return this.style.setFilter(t,e),this._update(!0),this},setLayerZoomRange:function(t,e,r){return this.style.setLayerZoomRange(t,e,r),this._update(!0),this},getFilter:function(t){return this.style.getFilter(t)},setPaintProperty:function(t,e,r,n){return this.style.setPaintProperty(t,e,r,n),this._update(!0),this},getPaintProperty:function(t,e,r){return this.style.getPaintProperty(t,e,r)},setLayoutProperty:function(t,e,r){return this.style.setLayoutProperty(t,e,r),this._update(!0),this},getLayoutProperty:function(t,e){return this.style.getLayoutProperty(t,e)},getContainer:function(){return this._container},getCanvasContainer:function(){return this._canvasContainer},getCanvas:function(){return this._canvas.getElement()},_setupContainer:function(){var t=this._container;t.classList.add("mapboxgl-map");var e=this._canvasContainer=l.create("div","mapboxgl-canvas-container",t);this._interactive&&e.classList.add("mapboxgl-interactive"),this._canvas=new n(this,e);var r=this._controlContainer=l.create("div","mapboxgl-control-container",t),i=this._controlCorners={};["top-left","top-right","bottom-left","bottom-right"].forEach(function(t){i[t]=l.create("div","mapboxgl-ctrl-"+t,r)})},_setupPainter:function(){var t=this._canvas.getWebGLContext({failIfMajorPerformanceCaveat:this._failIfMajorPerformanceCaveat,preserveDrawingBuffer:this._preserveDrawingBuffer});t?this.painter=new f(t,this.transform):this.fire("error",{error:new Error("Failed to initialize WebGL")})},_contextLost:function(t){t.preventDefault(),this._frameId&&a.cancelFrame(this._frameId),this.fire("webglcontextlost",{originalEvent:t})},_contextRestored:function(t){this._setupPainter(),this.resize(),this._update(),this.fire("webglcontextrestored",{originalEvent:t})},loaded:function(){return!this._styleDirty&&!this._sourcesDirty&&!(!this.style||!this.style.loaded())},_update:function(t){return this.style?(this._styleDirty=this._styleDirty||t,this._sourcesDirty=!0,this._rerender(),this):this},_render:function(){try{this.style&&this._styleDirty&&(this._styleDirty=!1,this.style.update(this._classes,this._classOptions),this._classOptions=null,this.style._recalculate(this.transform.zoom)),this.style&&this._sourcesDirty&&(this._sourcesDirty=!1,this.style._updateSources(this.transform)),this.painter.render(this.style,{debug:this.showTileBoundaries,showOverdrawInspector:this._showOverdrawInspector,vertices:this.vertices,rotating:this.rotating,zooming:this.zooming}),this.fire("render"),this.loaded()&&!this._loaded&&(this._loaded=!0,this.fire("load")),this._frameId=null,this.animationLoop.stopped()||(this._styleDirty=!0),(this._sourcesDirty||this._repaint||this._styleDirty)&&this._rerender()}catch(t){this.fire("error",{error:t})}return this},remove:function(){this._hash&&this._hash.remove(),a.cancelFrame(this._frameId),this.setStyle(null),void 0!==o&&o.removeEventListener("resize",this._onWindowResize,!1);var t=this.painter.gl.getExtension("WEBGL_lose_context");t&&t.loseContext(),w(this._canvasContainer),w(this._controlContainer),this._container.classList.remove("mapboxgl-map")},_rerender:function(){this.style&&!this._frameId&&(this._frameId=a.frame(this._render))},_forwardStyleEvent:function(t){this.fire("style."+t.type,i.extend({style:t.target},t))},_forwardSourceEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardLayerEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardTileEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_onStyleLoad:function(t){this.transform.unmodified&&this.jumpTo(this.style.stylesheet),this.style.update(this._classes,{transition:!1}),this._forwardStyleEvent(t)},_onStyleChange:function(t){this._update(!0),this._forwardStyleEvent(t)},_onSourceAdd:function(t){var e=t.source;e.onAdd&&e.onAdd(this),this._forwardSourceEvent(t)},_onSourceRemove:function(t){var e=t.source;e.onRemove&&e.onRemove(this),this._forwardSourceEvent(t)},_onSourceUpdate:function(t){this._update(),this._forwardSourceEvent(t)},_onWindowOnline:function(){this._update()},_onWindowResize:function(){this._trackResize&&this.stop().resize()._update()}}),i.extendAll(_.prototype,{_showTileBoundaries:!1,get showTileBoundaries(){return this._showTileBoundaries},set showTileBoundaries(t){this._showTileBoundaries!==t&&(this._showTileBoundaries=t,this._update())},_showCollisionBoxes:!1,get showCollisionBoxes(){return this._showCollisionBoxes},set showCollisionBoxes(t){this._showCollisionBoxes!==t&&(this._showCollisionBoxes=t,this.style._redoPlacement())},_showOverdrawInspector:!1,get showOverdrawInspector(){return this._showOverdrawInspector},set showOverdrawInspector(t){this._showOverdrawInspector!==t&&(this._showOverdrawInspector=t,this._update())},_repaint:!1,get repaint(){return this._repaint},set repaint(t){this._repaint=t,this._update()},_vertices:!1,get vertices(){return this._vertices},set vertices(t){this._vertices=t,this._update()}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../geo/transform":313,"../render/painter":327,"../style/animation_loop":347,"../style/style":350,"../util/browser":398,"../util/canvas":399,"../util/dom":400,"../util/evented":406,"../util/util":414,"./bind_handlers":379,"./camera":380,"./control/attribution":381,"./hash":392,"point-geometry":458}],394:[function(t,e,r){"use strict";e.exports=o;var n=t("../util/dom"),i=t("../geo/lng_lat"),a=t("point-geometry");function o(t,e){t||(t=n.create("div")),t.classList.add("mapboxgl-marker"),this._el=t,this._offset=a.convert(e&&e.offset||[0,0]),this._update=this._update.bind(this)}o.prototype={addTo:function(t){return this.remove(),this._map=t,t.getCanvasContainer().appendChild(this._el),t.on("move",this._update),this._update(),this},remove:function(){this._map&&(this._map.off("move",this._update),this._map=null);var t=this._el.parentNode;return t&&t.removeChild(this._el),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=i.convert(t),this._update(),this},getElement:function(){return this._el},_update:function(){if(this._map){var t=this._map.project(this._lngLat)._add(this._offset);n.setTransform(this._el,"translate("+t.x+"px,"+t.y+"px)")}}}},{"../geo/lng_lat":311,"../util/dom":400,"point-geometry":458}],395:[function(t,e,r){"use strict";e.exports=s;var n=t("../util/util"),i=t("../util/evented"),a=t("../util/dom"),o=t("../geo/lng_lat");function s(t){n.setOptions(this,t),n.bindAll(["_update","_onClickClose"],this)}s.prototype=n.inherit(i,{options:{closeButton:!0,closeOnClick:!0},addTo:function(t){return this._map=t,this._map.on("move",this._update),this.options.closeOnClick&&this._map.on("click",this._onClickClose),this._update(),this},remove:function(){return this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._container&&(this._container.parentNode.removeChild(this._container),delete this._container),this._map&&(this._map.off("move",this._update),this._map.off("click",this._onClickClose),delete this._map),this.fire("close"),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=o.convert(t),this._update(),this},setText:function(t){return this.setDOMContent(document.createTextNode(t))},setHTML:function(t){var e,r=document.createDocumentFragment(),n=document.createElement("body");for(n.innerHTML=t;e=n.firstChild;)r.appendChild(e);return this.setDOMContent(r)},setDOMContent:function(t){return this._createContent(),this._content.appendChild(t),this._update(),this},_createContent:function(){this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._content=a.create("div","mapboxgl-popup-content",this._container),this.options.closeButton&&(this._closeButton=a.create("button","mapboxgl-popup-close-button",this._content),this._closeButton.type="button",this._closeButton.innerHTML="&#215;",this._closeButton.addEventListener("click",this._onClickClose))},_update:function(){if(this._map&&this._lngLat&&this._content){this._container||(this._container=a.create("div","mapboxgl-popup",this._map.getContainer()),this._tip=a.create("div","mapboxgl-popup-tip",this._container),this._container.appendChild(this._content));var t=this._map.project(this._lngLat).round(),e=this.options.anchor;if(!e){var r=this._container.offsetWidth,n=this._container.offsetHeight;e=t.y<n?["top"]:t.y>this._map.transform.height-n?["bottom"]:[],t.x<r/2?e.push("left"):t.x>this._map.transform.width-r/2&&e.push("right"),e=0===e.length?"bottom":e.join("-")}var i={top:"translate(-50%,0)","top-left":"translate(0,0)","top-right":"translate(-100%,0)",bottom:"translate(-50%,-100%)","bottom-left":"translate(0,-100%)","bottom-right":"translate(-100%,-100%)",left:"translate(0,-50%)",right:"translate(-100%,-50%)"},o=this._container.classList;for(var s in i)o.remove("mapboxgl-popup-anchor-"+s);o.add("mapboxgl-popup-anchor-"+e),a.setTransform(this._container,i[e]+" translate("+t.x+"px,"+t.y+"px)")}},_onClickClose:function(){this.remove()}})},{"../geo/lng_lat":311,"../util/dom":400,"../util/evented":406,"../util/util":414}],396:[function(t,e,r){"use strict";function n(t,e){this.target=t,this.parent=e,this.callbacks={},this.callbackID=0,this.receive=this.receive.bind(this),this.target.addEventListener("message",this.receive,!1)}e.exports=n,n.prototype.receive=function(t){var e,r=t.data,n=r.id;if("<response>"===r.type)e=this.callbacks[r.id],delete this.callbacks[r.id],e&&e(r.error||null,r.data);else if(void 0!==r.id&&this.parent[r.type])this.parent[r.type](r.data,a.bind(this));else if(void 0!==r.id&&this.parent.workerSources){var i=r.type.split(".");this.parent.workerSources[i[0]][i[1]](r.data,a.bind(this))}else this.parent[r.type](r.data);function a(t,e,r){this.postMessage({type:"<response>",id:String(n),error:t?String(t):null,data:e},r)}},n.prototype.send=function(t,e,r,n){var i=null;r&&(this.callbacks[i=this.callbackID++]=r),this.postMessage({type:t,id:String(i),data:e},n)},n.prototype.postMessage=function(t,e){this.target.postMessage(t,e)}},{}],397:[function(t,e,r){"use strict";r.getJSON=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.setRequestHeader("Accept","application/json"),r.onerror=function(t){e(t)},r.onload=function(){if(r.status>=200&&r.status<300&&r.response){var t;try{t=JSON.parse(r.response)}catch(t){return e(t)}e(null,t)}else e(new Error(r.statusText))},r.send(),r},r.getArrayBuffer=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.responseType="arraybuffer",r.onerror=function(t){e(t)},r.onload=function(){r.status>=200&&r.status<300&&r.response?e(null,r.response):e(new Error(r.statusText))},r.send(),r},r.getImage=function(t,e){return r.getArrayBuffer(t,function(t,r){if(t)return e(t);var n=new Image;n.onload=function(){e(null,n),(window.URL||window.webkitURL).revokeObjectURL(n.src)};var i=new Blob([new Uint8Array(r)],{type:"image/png"});return n.src=(window.URL||window.webkitURL).createObjectURL(i),n.getData=function(){var t=document.createElement("canvas"),e=t.getContext("2d");return t.width=n.width,t.height=n.height,e.drawImage(n,0,0),e.getImageData(0,0,n.width,n.height).data},n})},r.getVideo=function(t,e){var r,n,i=document.createElement("video");i.onloadstart=function(){e(null,i)};for(var a=0;a<t.length;a++){var o=document.createElement("source");r=t[a],n=void 0,(n=document.createElement("a")).href=r,(n.protocol!==document.location.protocol||n.host!==document.location.host)&&(i.crossOrigin="Anonymous"),o.src=t[a],i.appendChild(o)}return i.getData=function(){return i},i}},{}],398:[function(t,e,r){"use strict";r.window=window,e.exports.now=window.performance&&window.performance.now?window.performance.now.bind(window.performance):Date.now.bind(Date);var n=window.requestAnimationFrame||window.mozRequestAnimationFrame||window.webkitRequestAnimationFrame||window.msRequestAnimationFrame;r.frame=function(t){return n(t)};var i=window.cancelAnimationFrame||window.mozCancelAnimationFrame||window.webkitCancelAnimationFrame||window.msCancelAnimationFrame;r.cancelFrame=function(t){i(t)},r.timed=function(t,n,i){if(!n)return t.call(i,1),null;var a=!1,o=e.exports.now();return r.frame(function s(l){a||((l=e.exports.now())>=o+n?t.call(i,1):(t.call(i,(l-o)/n),r.frame(s)))}),function(){a=!0}},r.supported=t("mapbox-gl-supported"),r.hardwareConcurrency=navigator.hardwareConcurrency||4,Object.defineProperty(r,"devicePixelRatio",{get:function(){return window.devicePixelRatio}}),r.supportsWebp=!1;var a=document.createElement("img");a.onload=function(){r.supportsWebp=!0},a.src="data:image/webp;base64,UklGRh4AAABXRUJQVlA4TBEAAAAvAQAAAAfQ//73v/+BiOh/AAA=",r.supportsGeolocation=!!navigator.geolocation},{"mapbox-gl-supported":299}],399:[function(t,e,r){"use strict";var n=t("../util"),i=t("mapbox-gl-supported");function a(t,e){this.canvas=document.createElement("canvas"),t&&e&&(this.canvas.style.position="absolute",this.canvas.classList.add("mapboxgl-canvas"),this.canvas.addEventListener("webglcontextlost",t._contextLost.bind(t),!1),this.canvas.addEventListener("webglcontextrestored",t._contextRestored.bind(t),!1),this.canvas.setAttribute("tabindex",0),e.appendChild(this.canvas))}e.exports=a,a.prototype.resize=function(t,e){var r=window.devicePixelRatio||1;this.canvas.width=r*t,this.canvas.height=r*e,this.canvas.style.width=t+"px",this.canvas.style.height=e+"px"},a.prototype.getWebGLContext=function(t){return t=n.extend({},t,i.webGLContextAttributes),this.canvas.getContext("webgl",t)||this.canvas.getContext("experimental-webgl",t)},a.prototype.getElement=function(){return this.canvas}},{"../util":414,"mapbox-gl-supported":299}],400:[function(t,e,r){"use strict";var n=t("point-geometry");r.create=function(t,e,r){var n=document.createElement(t);return e&&(n.className=e),r&&r.appendChild(n),n};var i=document.documentElement.style;function a(t){for(var e=0;e<t.length;e++)if(t[e]in i)return t[e]}var o,s=a(["userSelect","MozUserSelect","WebkitUserSelect","msUserSelect"]);r.disableDrag=function(){s&&(o=i[s],i[s]="none")},r.enableDrag=function(){s&&(i[s]=o)};var l=a(["transform","WebkitTransform"]);function c(t){t.preventDefault(),t.stopPropagation(),window.removeEventListener("click",c,!0)}r.setTransform=function(t,e){t.style[l]=e},r.suppressClick=function(){window.addEventListener("click",c,!0),window.setTimeout(function(){window.removeEventListener("click",c,!0)},0)},r.mousePos=function(t,e){var r=t.getBoundingClientRect();return e=e.touches?e.touches[0]:e,new n(e.clientX-r.left-t.clientLeft,e.clientY-r.top-t.clientTop)},r.touchPos=function(t,e){for(var r=t.getBoundingClientRect(),i=[],a=0;a<e.touches.length;a++)i.push(new n(e.touches[a].clientX-r.left-t.clientLeft,e.touches[a].clientY-r.top-t.clientTop));return i}},{"point-geometry":458}],401:[function(t,e,r){"use strict";var n=t("webworkify");e.exports=function(){return new n(t("../../source/worker"))}},{"../../source/worker":345,webworkify:558}],402:[function(t,e,r){"use strict";var n=t("quickselect");function i(t,e){return e.area-t.area}function a(t){for(var e,r,n=0,i=0,a=t.length,o=a-1;i<a;o=i++)e=t[i],n+=((r=t[o]).x-e.x)*(e.y+r.y);return n}e.exports=function(t,e){var r=t.length;if(r<=1)return[t];for(var o,s,l=[],c=0;c<r;c++){var u=a(t[c]);0!==u&&(t[c].area=Math.abs(u),void 0===s&&(s=u<0),s===u<0?(o&&l.push(o),o=[t[c]]):o.push(t[c]))}if(o&&l.push(o),e>1)for(var f=0;f<l.length;f++)l[f].length<=e||(n(l[f],e,1,l[f].length-1,i),l[f]=l[f].slice(0,e));return l}},{quickselect:475}],403:[function(t,e,r){"use strict";e.exports={API_URL:"https://api.mapbox.com",REQUIRE_ACCESS_TOKEN:!0}},{}],404:[function(t,e,r){"use strict";var n=t("assert");function i(t){this._stringToNumber={},this._numberToString=[];for(var e=0;e<t.length;e++){var r=t[e];this._stringToNumber[r]=e,this._numberToString[e]=r}}e.exports=i,i.prototype.encode=function(t){return n(t in this._stringToNumber),this._stringToNumber[t]},i.prototype.decode=function(t){return n(t<this._numberToString.length),this._numberToString[t]}},{assert:51}],405:[function(t,e,r){"use strict";var n=t("./util"),i=t("./actor"),a=t("./web_worker");function o(t,e){this.actors=[],this.currentActor=0;for(var r=0;r<t;r++){var n=new a,o=new i(n,e);o.name="Worker "+r,this.actors.push(o)}}e.exports=o,o.prototype={broadcast:function(t,e,r){r=r||function(){},n.asyncAll(this.actors,function(r,n){r.send(t,e,n)},r)},send:function(t,e,r,n,i){return("number"!=typeof n||isNaN(n))&&(n=this.currentActor=(this.currentActor+1)%this.actors.length),this.actors[n].send(t,e,r,i),n},remove:function(){for(var t=0;t<this.actors.length;t++)this.actors[t].target.terminate();this.actors=[]}}},{"./actor":396,"./util":414,"./web_worker":401}],406:[function(t,e,r){"use strict";var n=t("./util"),i={on:function(t,e){return this._events=this._events||{},this._events[t]=this._events[t]||[],this._events[t].push(e),this},off:function(t,e){if(!t)return delete this._events,this;if(!this.listens(t))return this;if(e){var r=this._events[t].indexOf(e);r>=0&&this._events[t].splice(r,1),this._events[t].length||delete this._events[t]}else delete this._events[t];return this},once:function(t,e){var r=function(n){this.off(t,r),e.call(this,n)}.bind(this);return this.on(t,r),this},fire:function(t,e){if(!this.listens(t))return n.endsWith(t,"error")&&console.error(e&&e.error||e||"Empty error event"),this;e=n.extend({},e),n.extend(e,{type:t,target:this});for(var r=this._events[t].slice(),i=0;i<r.length;i++)r[i].call(this,e);return this},listens:function(t){return!(!this._events||!this._events[t])}};e.exports=i},{"./util":414}],407:[function(t,e,r){"use strict";function n(t,e,r){if(1===t){var n=r.readMessage(i,{glyphs:{}});e.push(n)}}function i(t,e,r){if(1===t)e.name=r.readString();else if(2===t)e.range=r.readString();else if(3===t){var n=r.readMessage(a,{});e.glyphs[n.id]=n}}function a(t,e,r){1===t?e.id=r.readVarint():2===t?e.bitmap=r.readBytes():3===t?e.width=r.readVarint():4===t?e.height=r.readVarint():5===t?e.left=r.readSVarint():6===t?e.top=r.readSVarint():7===t&&(e.advance=r.readVarint())}e.exports=function(t,e){this.stacks=t.readFields(n,[],e)}},{}],408:[function(t,e,r){"use strict";function n(t,e,r){return t*(1-r)+e*r}e.exports=n,n.number=n,n.vec2=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r)]},n.color=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r),n(t[2],e[2],r),n(t[3],e[3],r)]},n.array=function(t,e,r){return t.map(function(t,i){return n(t,e[i],r)})}},{}],409:[function(t,e,r){"use strict";function n(t,e,r){if(t.length>1){if(i(t,e))return!0;for(var n=0;n<e.length;n++)if(s(e[n],t,r))return!0}for(var a=0;a<t.length;a++)if(s(t[a],e,r))return!0;return!1}function i(t,e){for(var r=0;r<t.length-1;r++)for(var n=t[r],i=t[r+1],a=0;a<e.length-1;a++){if(o(n,i,e[a],e[a+1]))return!0}return!1}function a(t,e,r){return(r.y-t.y)*(e.x-t.x)>(e.y-t.y)*(r.x-t.x)}function o(t,e,r,n){return a(t,r,n)!==a(e,r,n)&&a(t,e,r)!==a(t,e,n)}function s(t,e,r){var n=r*r;if(1===e.length)return t.distSqr(e[0])<n;for(var i=1;i<e.length;i++){if(l(t,e[i-1],e[i])<n)return!0}return!1}function l(t,e,r){var n=e.distSqr(r);if(0===n)return t.distSqr(e);var i=((t.x-e.x)*(r.x-e.x)+(t.y-e.y)*(r.y-e.y))/n;return i<0?t.distSqr(e):i>1?t.distSqr(r):t.distSqr(r.sub(e)._mult(i)._add(e))}function c(t,e){for(var r,n,i,a=!1,o=0;o<t.length;o++)for(var s=0,l=(r=t[o]).length-1;s<r.length;l=s++)n=r[s],i=r[l],n.y>e.y!=i.y>e.y&&e.x<(i.x-n.x)*(e.y-n.y)/(i.y-n.y)+n.x&&(a=!a);return a}function u(t,e){for(var r=!1,n=0,i=t.length-1;n<t.length;i=n++){var a=t[n],o=t[i];a.y>e.y!=o.y>e.y&&e.x<(o.x-a.x)*(e.y-a.y)/(o.y-a.y)+a.x&&(r=!r)}return r}e.exports={multiPolygonIntersectsBufferedMultiPoint:function(t,e,r){for(var n=0;n<t.length;n++)for(var i=t[n],a=0;a<e.length;a++)for(var o=e[a],l=0;l<o.length;l++){var c=o[l];if(u(i,c))return!0;if(s(c,i,r))return!0}return!1},multiPolygonIntersectsMultiPolygon:function(t,e){if(1===t.length&&1===t[0].length)return c(e,t[0][0]);for(var r=0;r<e.length;r++)for(var n=e[r],a=0;a<n.length;a++)if(c(t,n[a]))return!0;for(var o=0;o<t.length;o++){for(var s=t[o],l=0;l<s.length;l++)if(c(e,s[l]))return!0;for(var u=0;u<e.length;u++)if(i(s,e[u]))return!0}return!1},multiPolygonIntersectsBufferedMultiLine:function(t,e,r){for(var i=0;i<e.length;i++)for(var a=e[i],o=0;o<t.length;o++){var s=t[o];if(s.length>=3)for(var l=0;l<a.length;l++)if(u(s,a[l]))return!0;if(n(s,a,r))return!0}return!1}}},{}],410:[function(t,e,r){"use strict";function n(t,e){this.max=t,this.onRemove=e,this.reset()}e.exports=n,n.prototype.reset=function(){for(var t in this.data)this.onRemove(this.data[t]);return this.data={},this.order=[],this},n.prototype.add=function(t,e){if(this.has(t))this.order.splice(this.order.indexOf(t),1),this.data[t]=e,this.order.push(t);else if(this.data[t]=e,this.order.push(t),this.order.length>this.max){var r=this.get(this.order[0]);r&&this.onRemove(r)}return this},n.prototype.has=function(t){return t in this.data},n.prototype.keys=function(){return this.order},n.prototype.get=function(t){if(!this.has(t))return null;var e=this.data[t];return delete this.data[t],this.order.splice(this.order.indexOf(t),1),e},n.prototype.setMaxSize=function(t){for(this.max=t;this.order.length>this.max;){var e=this.get(this.order[0]);e&&this.onRemove(e)}return this}},{}],411:[function(t,e,r){"use strict";var n=t("./config"),i=t("./browser"),a=t("url"),o=t("./util");function s(t,e,r){if(!(r=r||n.ACCESS_TOKEN)&&n.REQUIRE_ACCESS_TOKEN)throw new Error("An API access token is required to use Mapbox GL. See https://www.mapbox.com/developers/api/#access-tokens");if(t=t.replace(/^mapbox:\/\//,n.API_URL+e),t+=-1!==t.indexOf("?")?"&access_token=":"?access_token=",n.REQUIRE_ACCESS_TOKEN){if("s"===r[0])throw new Error("Use a public access token (pk.*) with Mapbox GL JS, not a secret access token (sk.*). See https://www.mapbox.com/developers/api/#access-tokens");t+=r}return t}function l(t){return t?"?"+t:""}e.exports.normalizeStyleURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox:/"+r.pathname+l(r.query),"/styles/v1/",e)},e.exports.normalizeSourceURL=function(t,e){return"mapbox:"!==a.parse(t).protocol?t:s(t+".json","/v4/",e)+"&secure"},e.exports.normalizeGlyphsURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox://"+r.pathname.split("/")[1]+"/{fontstack}/{range}.pbf"+l(r.query),"/fonts/v1/",e)},e.exports.normalizeSpriteURL=function(t,e,r,n){var i=a.parse(t);return"mapbox:"!==i.protocol?(i.pathname+=e+r,a.format(i)):s("mapbox:/"+i.pathname+"/sprite"+e+r+l(i.query),"/styles/v1/",n)},e.exports.normalizeTileURL=function(t,e,r){var s=a.parse(t,!0);if(!e)return t;if("mapbox:"!==a.parse(e).protocol)return t;var l,c=i.supportsWebp?".webp":"$1",u=i.devicePixelRatio>=2||512===r?"@2x":"";return 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l=0,c=0;c<3;++c)l+=Math.pow(r[c]-e[c],2);this.radius.set(t,.5*Math.log(Math.max(l,1e-6))),this.center.set(t,r[0],r[1],r[2])},h.translate=function(t,e,r,n){this.center.move(t,e||0,r||0,n||0)},h.setMatrix=function(t,e){var r=this.computedRotation;s(r,e[0],e[1],e[2],e[4],e[5],e[6],e[8],e[9],e[10]),u(r,r),this.rotation.set(t,r[0],r[1],r[2],r[3]);var n=this.computedMatrix;o(n,e);var i=n[15];if(Math.abs(i)>1e-6){var a=n[12]/i,l=n[13]/i,c=n[14]/i;this.recalcMatrix(t);var f=Math.exp(this.computedRadius[0]);this.center.set(t,a-n[2]*f,l-n[6]*f,c-n[10]*f),this.radius.idle(t)}else this.center.idle(t),this.radius.idle(t)},h.setDistance=function(t,e){e>0&&this.radius.set(t,Math.log(e))},h.setDistanceLimits=function(t,e){t=t>0?Math.log(t):-1/0,e=e>0?Math.log(e):1/0,e=Math.max(e,t),this.radius.bounds[0][0]=t,this.radius.bounds[1][0]=e},h.getDistanceLimits=function(t){var e=this.radius.bounds;return 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translate, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\nuniform float miterLimit, dashLength, miterMode;\n\nvarying vec4 fragColor;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 tangent;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nconst float MAX_LINES = 256.;\nconst float REVERSE_THRESHOLD = -.875;\nconst float MIN_DIST = 1.;\n\n//TODO: possible optimizations: avoid overcalculating all for vertices and calc just one instead\n//TODO: precalculate dot products, normalize things beforehead etc.\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nbool isNaN( float val ){\n  return ( val < 0.0 || 0.0 < val || val == 0.0 ) ? false : true;\n}\n\nvoid main() {\n\tvec2 aCoord = aCoord, bCoord = bCoord, prevCoord = prevCoord, nextCoord = nextCoord;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineBot = 1. - lineTop;\n\tfloat depth = (MAX_LINES - 1. - id) / MAX_LINES;\n\n\tfragColor = (lineStart * aColor + lineEnd * bColor) / 255.;\n\n\tif (isNaN(aCoord.x) || isNaN(aCoord.y) || isNaN(bCoord.x) || isNaN(bCoord.y)) return;\n\n\tif (aCoord == prevCoord) prevCoord = aCoord + normalize(bCoord - aCoord);\n\tif (bCoord == nextCoord) nextCoord = bCoord - normalize(bCoord - aCoord);\n\n\tvec2 prevDiff = aCoord - prevCoord;\n\tvec2 currDiff = bCoord - aCoord;\n\tvec2 nextDiff = nextCoord - bCoord;\n\n\tvec2 prevDirection = normalize(prevDiff);\n\tvec2 currDirection = normalize(currDiff);\n\tvec2 nextDirection = normalize(nextDiff);\n\n\tvec2 prevTangent = normalize(prevDiff * scaleRatio);\n\tvec2 currTangent = normalize(currDiff * scaleRatio);\n\tvec2 nextTangent = normalize(nextDiff * scaleRatio);\n\n\tvec2 prevNormal = vec2(-prevTangent.y, prevTangent.x);\n\tvec2 currNormal = vec2(-currTangent.y, currTangent.x);\n\tvec2 nextNormal = vec2(-nextTangent.y, nextTangent.x);\n\n\tvec2 startJoinDirection = normalize(prevTangent - currTangent);\n\tvec2 endJoinDirection = normalize(currTangent - nextTangent);\n\n\t//collapsed/unidirectional segment cases\n\tif (prevDirection == currDirection) {\n\t\tstartJoinDirection = currNormal;\n\t}\n\tif (nextDirection == currDirection) {\n\t\tendJoinDirection = currNormal;\n\t}\n\tif (aCoord == bCoord) {\n\t\tendJoinDirection = startJoinDirection;\n\t\tcurrNormal = prevNormal;\n\t\tcurrTangent = prevTangent;\n\t}\n\n\ttangent = currTangent;\n\n\t//calculate join shifts relative to normals\n\tfloat startJoinShift = dot(currNormal, startJoinDirection);\n\tfloat endJoinShift = dot(currNormal, endJoinDirection);\n\n\tfloat startMiterRatio = abs(1. / startJoinShift);\n\tfloat endMiterRatio = abs(1. / endJoinShift);\n\n\tvec2 startJoin = startJoinDirection * startMiterRatio;\n\tvec2 endJoin = endJoinDirection * endMiterRatio;\n\n\tvec2 startTopJoin, startBotJoin, endTopJoin, endBotJoin;\n\tstartTopJoin = sign(startJoinShift) * startJoin * .5;\n\tstartBotJoin = -startTopJoin;\n\n\tendTopJoin = sign(endJoinShift) * endJoin * .5;\n\tendBotJoin = -endTopJoin;\n\n\tvec2 aTopCoord = aCoord + normalWidth * startTopJoin;\n\tvec2 bTopCoord = bCoord + normalWidth * endTopJoin;\n\tvec2 aBotCoord = aCoord + normalWidth * startBotJoin;\n\tvec2 bBotCoord = bCoord + normalWidth * endBotJoin;\n\n\t//miter anti-clipping\n\tfloat baClipping = distToLine(bCoord, aCoord, aBotCoord) / dot(normalize(normalWidth * endBotJoin), normalize(normalWidth.yx * vec2(-startBotJoin.y, startBotJoin.x)));\n\tfloat abClipping = distToLine(aCoord, bCoord, bTopCoord) / dot(normalize(normalWidth * startBotJoin), normalize(normalWidth.yx * vec2(-endBotJoin.y, endBotJoin.x)));\n\n\t//prevent close to reverse direction switch\n\tbool prevReverse = dot(currTangent, prevTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, prevNormal)) * min(length(prevDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\tbool nextReverse = dot(currTangent, nextTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, nextNormal)) * min(length(nextDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\n\tif (prevReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * startJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / startMiterRatio, 1.);\n\t\taBotCoord = aCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\taTopCoord = aCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!nextReverse && baClipping > 0. && baClipping < length(normalWidth * endBotJoin)) {\n\t\t//handle miter clipping\n\t\tbTopCoord -= normalWidth * endTopJoin;\n\t\tbTopCoord += normalize(endTopJoin * normalWidth) * baClipping;\n\t}\n\n\tif (nextReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * endJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / endMiterRatio, 1.);\n\t\tbBotCoord = bCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\tbTopCoord = bCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!prevReverse && abClipping > 0. && abClipping < length(normalWidth * startBotJoin)) {\n\t\t//handle miter clipping\n\t\taBotCoord -= normalWidth * startBotJoin;\n\t\taBotCoord += normalize(startBotJoin * normalWidth) * abClipping;\n\t}\n\n\tvec2 aTopPosition = (aTopCoord) * scale + translate;\n\tvec2 aBotPosition = (aBotCoord) * scale + translate;\n\n\tvec2 bTopPosition = (bTopCoord) * scale + translate;\n\tvec2 bBotPosition = (bBotCoord) * scale + translate;\n\n\t//position is normalized 0..1 coord on the screen\n\tvec2 position = (aTopPosition * lineTop + aBotPosition * lineBot) * lineStart + (bTopPosition * lineTop + bBotPosition * lineBot) * lineEnd;\n\n\tstartCoord = aCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\tendCoord = bCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\n\tgl_Position = vec4(position  * 2.0 - 1.0, depth, 1);\n\n\tenableStartMiter = step(dot(currTangent, prevTangent), .5);\n\tenableEndMiter = step(dot(currTangent, nextTangent), .5);\n\n\t//bevel miter cutoffs\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * miterLimit * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * miterLimit * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n\n\t//round miter cutoffs\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * abs(dot(startJoinDirection, currNormal)) * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * abs(dot(endJoinDirection, currNormal)) * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id, miterMode;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nvoid main() {\n\tfloat alpha = 1., distToStart, distToEnd;\n\tfloat cutoff = thickness * .5;\n\n\t//bevel miter\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToStart + 1., 0.), 1.);\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToEnd + 1., 0.), 1.);\n\t\t}\n\t}\n\n\t// round miter\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - startCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - endCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\t}\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * dash;\n}\n"]),attributes:{lineEnd:{buffer:v,divisor:0,stride:8,offset:0},lineTop:{buffer:v,divisor:0,stride:8,offset:4},aColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset},divisor:1},bColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset+4},divisor:1},prevCoord:{buffer:g,stride:8,offset:function(t,e){return 8*e.offset},divisor:1},aCoord:{buffer:g,stride:8,offset:function(t,e){return 8+8*e.offset},divisor:1},bCoord:{buffer:g,stride:8,offset:function(t,e){return 16+8*e.offset},divisor:1},nextCoord:{buffer:g,stride:8,offset:function(t,e){return 24+8*e.offset},divisor:1}}},T)),d=t(a({vert:o(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec2 aCoord, bCoord, aCoordFract, bCoordFract;\nattribute vec4 color;\nattribute float lineEnd, lineTop;\n\nuniform vec2 scale, scaleFract, translate, translateFract, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nconst float MAX_LINES = 256.;\n\nvec2 project(vec2 position, vec2 positionFract, vec2 scale, vec2 scaleFract, vec2 translate, vec2 translateFract) {\n\t// the order is important\n\treturn position * scale + translate\n       + positionFract * scale + translateFract\n       + position * scaleFract\n       + positionFract * scaleFract;\n}\n\nvoid main() {\n\t// vec2 scaleRatio = scale * viewport.zw;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineOffset = lineTop * 2. - 1.;\n\tfloat depth = (MAX_LINES - 1. - id) / (MAX_LINES);\n\n\tvec2 diff = (bCoord + bCoordFract - aCoord - aCoordFract);\n\ttangent = normalize(diff * scaleRatio);\n\tvec2 normal = vec2(-tangent.y, tangent.x);\n\n\tvec2 position = project(aCoord, aCoordFract, scale, scaleFract, translate, translateFract) * lineStart\n\t\t+ project(bCoord, bCoordFract, scale, scaleFract, translate, translateFract) * lineEnd\n\n\t\t+ thickness * normal * .5 * lineOffset / viewport.zw;\n\n\tgl_Position = vec4(position * 2.0 - 1.0, depth, 1);\n\n\tfragColor = color / 255.;\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nvoid main() {\n\tfloat alpha = 1.;\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * 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n.baseCalendar,i(a.prototype,{name:"Mayan",jdEpoch:584282.5,hasYearZero:!0,minMonth:0,firstMonth:0,minDay:0,regionalOptions:{"":{name:"Mayan",epochs:["",""],monthNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],monthNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],dayNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesMin:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],digits:null,dateFormat:"YYYY.m.d",firstDay:0,isRTL:!1,haabMonths:["Pop","Uo","Zip","Zotz","Tzec","Xul","Yaxkin","Mol","Chen","Yax","Zac","Ceh","Mac","Kankin","Muan","Pax","Kayab","Cumku","Uayeb"],tzolkinMonths:["Imix","Ik","Akbal","Kan","Chicchan","Cimi","Manik","Lamat","Muluc","Oc","Chuen","Eb","Ben","Ix","Men","Cib","Caban","Etznab","Cauac","Ahau"]}},leapYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),!1},formatYear:function(t){t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year();var e=Math.floor(t/400);return t%=400,t+=t<0?400:0,e+"."+Math.floor(t/20)+"."+t%20},forYear:function(t){if((t=t.split(".")).length<3)throw"Invalid Mayan year";for(var e=0,r=0;r<t.length;r++){var n=parseInt(t[r],10);if(Math.abs(n)>19||r>0&&n<0)throw"Invalid Mayan year";e=20*e+n}return e},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),18},weekOfYear:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),0},daysInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),360},daysInMonth:function(t,e){return this._validate(t,e,this.minDay,n.local.invalidMonth),20},daysInWeek:function(){return 5},dayOfWeek:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate).day()},weekDay:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),!0},extraInfo:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate).toJD(),a=this._toHaab(i),o=this._toTzolkin(i);return{haabMonthName:this.local.haabMonths[a[0]-1],haabMonth:a[0],haabDay:a[1],tzolkinDayName:this.local.tzolkinMonths[o[0]-1],tzolkinDay:o[0],tzolkinTrecena:o[1]}},_toHaab:function(t){var e=o((t-=this.jdEpoch)+8+340,365);return[Math.floor(e/20)+1,o(e,20)]},_toTzolkin:function(t){return[s((t-=this.jdEpoch)+20,20),s(t+4,13)]},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);return i.day()+20*i.month()+360*i.year()+this.jdEpoch},fromJD:function(t){t=Math.floor(t)+.5-this.jdEpoch;var e=Math.floor(t/360);t%=360,t+=t<0?360:0;var r=Math.floor(t/20),n=t%20;return this.newDate(e,r,n)}}),n.calendars.mayan=a},{"../main":575,"object-assign":443}],569:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new 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n.add(1-(n.dayOfWeek()||7),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInMonth:function(t,e){var r=this._validate(t,e,this.minDay,n.local.invalidMonth);return this.daysPerMonth[r.month()-1]+(12===r.month()&&this.leapYear(r.year())?1:0)},weekDay:function(t,e,r){return(this.dayOfWeek(t,e,r)||7)<6},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidMonth);(t=i.year())<0&&t++;for(var a=i.day(),s=1;s<i.month();s++)a+=this.daysPerMonth[s-1];return a+o.toJD(t+1468,3,13)},fromJD:function(t){t=Math.floor(t+.5);for(var e=Math.floor((t-(this.jdEpoch-1))/366);t>=this.toJD(e+1,1,1);)e++;for(var r=t-Math.floor(this.toJD(e,1,1)+.5)+1,n=1;r>this.daysInMonth(e,n);)r-=this.daysInMonth(e,n),n++;return this.newDate(e,n,r)}}),n.calendars.nanakshahi=a},{"../main":575,"object-assign":443}],570:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new n.baseCalendar,i(a.prototype,{name:"Nepali",jdEpoch:1700709.5,daysPerMonth:[31,31,32,32,31,30,30,29,30,29,30,30],hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,daysPerYear:365,regionalOptions:{"":{name:"Nepali",epochs:["BBS","ABS"],monthNames:["Baisakh","Jestha","Ashadh","Shrawan","Bhadra","Ashwin","Kartik","Mangsir","Paush","Mangh","Falgun","Chaitra"],monthNamesShort:["Bai","Je","As","Shra","Bha","Ash","Kar","Mang","Pau","Ma","Fal","Chai"],dayNames:["Aaitabaar","Sombaar","Manglbaar","Budhabaar","Bihibaar","Shukrabaar","Shanibaar"],dayNamesShort:["Aaita","Som","Mangl","Budha","Bihi","Shukra","Shani"],dayNamesMin:["Aai","So","Man","Bu","Bi","Shu","Sha"],digits:null,dateFormat:"dd/mm/yyyy",firstDay:1,isRTL:!1}},leapYear:function(t){return this.daysInYear(t)!==this.daysPerYear},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){if(t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year(),void 0===this.NEPALI_CALENDAR_DATA[t])return this.daysPerYear;for(var e=0,r=this.minMonth;r<=12;r++)e+=this.NEPALI_CALENDAR_DATA[t][r];return e},daysInMonth:function(t,e){return t.year&&(e=t.month(),t=t.year()),this._validate(t,e,this.minDay,n.local.invalidMonth),void 0===this.NEPALI_CALENDAR_DATA[t]?this.daysPerMonth[e-1]:this.NEPALI_CALENDAR_DATA[t][e]},weekDay:function(t,e,r){return 6!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);t=i.year(),e=i.month(),r=i.day();var a=n.instance(),o=0,s=e,l=t;this._createMissingCalendarData(t);var c=t-(s>9||9===s&&r>=this.NEPALI_CALENDAR_DATA[l][0]?56:57);for(9!==e&&(o=r,s--);9!==s;)s<=0&&(s=12,l--),o+=this.NEPALI_CALENDAR_DATA[l][s],s--;return 9===e?(o+=r-this.NEPALI_CALENDAR_DATA[l][0])<0&&(o+=a.daysInYear(c)):o+=this.NEPALI_CALENDAR_DATA[l][9]-this.NEPALI_CALENDAR_DATA[l][0],a.newDate(c,1,1).add(o,"d").toJD()},fromJD:function(t){var e=n.instance().fromJD(t),r=e.year(),i=e.dayOfYear(),a=r+56;this._createMissingCalendarData(a);for(var o=9,s=this.NEPALI_CALENDAR_DATA[a][0],l=this.NEPALI_CALENDAR_DATA[a][o]-s+1;i>l;)++o>12&&(o=1,a++),l+=this.NEPALI_CALENDAR_DATA[a][o];var c=this.NEPALI_CALENDAR_DATA[a][o]-(l-i);return this.newDate(a,o,c)},_createMissingCalendarData:function(t){var e=this.daysPerMonth.slice(0);e.unshift(17);for(var r=t-1;r<t+2;r++)void 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n.baseCalendar,i(a.prototype,{name:"UmmAlQura",hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,regionalOptions:{"":{name:"Umm al-Qura",epochs:["BH","AH"],monthNames:["Al-Muharram","Safar","Rabi' al-awwal","Rabi' Al-Thani","Jumada Al-Awwal","Jumada Al-Thani","Rajab","Sha'aban","Ramadan","Shawwal","Dhu al-Qi'dah","Dhu al-Hijjah"],monthNamesShort:["Muh","Saf","Rab1","Rab2","Jum1","Jum2","Raj","Sha'","Ram","Shaw","DhuQ","DhuH"],dayNames:["Yawm al-Ahad","Yawm al-Ithnain","Yawm al-Thal\u0101th\u0101\u2019","Yawm al-Arba\u2018\u0101\u2019","Yawm al-Kham\u012bs","Yawm al-Jum\u2018a","Yawm al-Sabt"],dayNamesMin:["Ah","Ith","Th","Ar","Kh","Ju","Sa"],digits:null,dateFormat:"yyyy/mm/dd",firstDay:6,isRTL:!0}},leapYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear);return 355===this.daysInYear(e.year())},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){for(var e=0,r=1;r<=12;r++)e+=this.daysInMonth(t,r);return e},daysInMonth:function(t,e){for(var r=this._validate(t,e,this.minDay,n.local.invalidMonth).toJD()-24e5+.5,i=0,a=0;a<o.length;a++){if(o[a]>r)return o[i]-o[i-1];i++}return 30},weekDay:function(t,e,r){return 5!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate),a=12*(i.year()-1)+i.month()-15292;return i.day()+o[a-1]-1+24e5-.5},fromJD:function(t){for(var e=t-24e5+.5,r=0,n=0;n<o.length&&!(o[n]>e);n++)r++;var i=r+15292,a=Math.floor((i-1)/12),s=a+1,l=i-12*a,c=e-o[r-1]+1;return this.newDate(s,l,c)},isValid:function(t,e,r){var i=n.baseCalendar.prototype.isValid.apply(this,arguments);return i&&(i=(t=null!=t.year?t.year:t)>=1276&&t<=1500),i},_validate:function(t,e,r,i){var a=n.baseCalendar.prototype._validate.apply(this,arguments);if(a.year<1276||a.year>1500)throw i.replace(/\{0\}/,this.local.name);return a}}),n.calendars.ummalqura=a;var 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n=t("object-assign");function i(){this.regionalOptions=[],this.regionalOptions[""]={invalidCalendar:"Calendar {0} not found",invalidDate:"Invalid {0} date",invalidMonth:"Invalid {0} month",invalidYear:"Invalid {0} year",differentCalendars:"Cannot mix {0} and {1} dates"},this.local=this.regionalOptions[""],this.calendars={},this._localCals={}}function a(t,e,r,n){if(this._calendar=t,this._year=e,this._month=r,this._day=n,0===this._calendar._validateLevel&&!this._calendar.isValid(this._year,this._month,this._day))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name)}function o(t,e){return"000000".substring(0,e-(t=""+t).length)+t}function s(){this.shortYearCutoff="+10"}function l(t){this.local=this.regionalOptions[t]||this.regionalOptions[""]}n(i.prototype,{instance:function(t,e){t=(t||"gregorian").toLowerCase(),e=e||"";var r=this._localCals[t+"-"+e];if(!r&&this.calendars[t]&&(r=new this.calendars[t](e),this._localCals[t+"-"+e]=r),!r)throw(this.local.invalidCalendar||this.regionalOptions[""].invalidCalendar).replace(/\{0\}/,t);return r},newDate:function(t,e,r,n,i){return(n=(null!=t&&t.year?t.calendar():"string"==typeof n?this.instance(n,i):n)||this.instance()).newDate(t,e,r)},substituteDigits:function(t){return function(e){return(e+"").replace(/[0-9]/g,function(e){return t[e]})}},substituteChineseDigits:function(t,e){return function(r){for(var n="",i=0;r>0;){var a=r%10;n=(0===a?"":t[a]+e[i])+n,i++,r=Math.floor(r/10)}return 0===n.indexOf(t[1]+e[1])&&(n=n.substr(1)),n||t[0]}}}),n(a.prototype,{newDate:function(t,e,r){return this._calendar.newDate(null==t?this:t,e,r)},year:function(t){return 0===arguments.length?this._year:this.set(t,"y")},month:function(t){return 0===arguments.length?this._month:this.set(t,"m")},day:function(t){return 0===arguments.length?this._day:this.set(t,"d")},date:function(t,e,r){if(!this._calendar.isValid(t,e,r))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name);return this._year=t,this._month=e,this._day=r,this},leapYear:function(){return this._calendar.leapYear(this)},epoch:function(){return this._calendar.epoch(this)},formatYear:function(){return this._calendar.formatYear(this)},monthOfYear:function(){return this._calendar.monthOfYear(this)},weekOfYear:function(){return this._calendar.weekOfYear(this)},daysInYear:function(){return this._calendar.daysInYear(this)},dayOfYear:function(){return this._calendar.dayOfYear(this)},daysInMonth:function(){return this._calendar.daysInMonth(this)},dayOfWeek:function(){return this._calendar.dayOfWeek(this)},weekDay:function(){return this._calendar.weekDay(this)},extraInfo:function(){return this._calendar.extraInfo(this)},add:function(t,e){return this._calendar.add(this,t,e)},set:function(t,e){return this._calendar.set(this,t,e)},compareTo:function(t){if(this._calendar.name!==t._calendar.name)throw(c.local.differentCalendars||c.regionalOptions[""].differentCalendars).replace(/\{0\}/,this._calendar.local.name).replace(/\{1\}/,t._calendar.local.name);var e=this._year!==t._year?this._year-t._year:this._month!==t._month?this.monthOfYear()-t.monthOfYear():this._day-t._day;return 0===e?0:e<0?-1:1},calendar:function(){return this._calendar},toJD:function(){return this._calendar.toJD(this)},fromJD:function(t){return this._calendar.fromJD(t)},toJSDate:function(){return this._calendar.toJSDate(this)},fromJSDate:function(t){return this._calendar.fromJSDate(t)},toString:function(){return(this.year()<0?"-":"")+o(Math.abs(this.year()),4)+"-"+o(this.month(),2)+"-"+o(this.day(),2)}}),n(s.prototype,{_validateLevel:0,newDate:function(t,e,r){return null==t?this.today():(t.year&&(this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),r=t.day(),e=t.month(),t=t.year()),new a(this,t,e,r))},today:function(){return this.fromJSDate(new Date)},epoch:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear).year()<0?this.local.epochs[0]:this.local.epochs[1]},formatYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return(e.year()<0?"-":"")+o(Math.abs(e.year()),4)},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear),12},monthOfYear:function(t,e){var r=this._validate(t,e,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth);return(r.month()+this.monthsInYear(r)-this.firstMonth)%this.monthsInYear(r)+this.minMonth},fromMonthOfYear:function(t,e){var r=(e+this.firstMonth-2*this.minMonth)%this.monthsInYear(t)+this.minMonth;return this._validate(t,r,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth),r},daysInYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return this.leapYear(e)?366:365},dayOfYear:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return n.toJD()-this.newDate(n.year(),this.fromMonthOfYear(n.year(),this.minMonth),this.minDay).toJD()+1},daysInWeek:function(){return 7},dayOfWeek:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return(Math.floor(this.toJD(n))+2)%this.daysInWeek()},extraInfo:function(t,e,r){return this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),{}},add:function(t,e,r){return this._validate(t,this.minMonth,this.minDay,c.local.invalidDate||c.regionalOptions[""].invalidDate),this._correctAdd(t,this._add(t,e,r),e,r)},_add:function(t,e,r){if(this._validateLevel++,"d"===r||"w"===r){var n=t.toJD()+e*("w"===r?this.daysInWeek():1),i=t.calendar().fromJD(n);return this._validateLevel--,[i.year(),i.month(),i.day()]}try{var a=t.year()+("y"===r?e:0),o=t.monthOfYear()+("m"===r?e:0);i=t.day();"y"===r?(t.month()!==this.fromMonthOfYear(a,o)&&(o=this.newDate(a,t.month(),this.minDay).monthOfYear()),o=Math.min(o,this.monthsInYear(a)),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o)))):"m"===r&&(!function(t){for(;o<t.minMonth;)a--,o+=t.monthsInYear(a);for(var e=t.monthsInYear(a);o>e-1+t.minMonth;)a++,o-=e,e=t.monthsInYear(a)}(this),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o))));var s=[a,this.fromMonthOfYear(a,o),i];return this._validateLevel--,s}catch(t){throw 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r,n,a,o,s=i.getFromId(t,e.xref),l=i.getFromId(t,e.yref),c=3*e.arrowsize*e.arrowwidth||0,u=3*e.startarrowsize*e.arrowwidth||0;s&&s.autorange&&(r=c+e.xshift,n=c-e.xshift,a=u+e.xshift,o=u-e.xshift,e.axref===e.xref?(i.expand(s,[s.r2c(e.x)],{ppadplus:r,ppadminus:n}),i.expand(s,[s.r2c(e.ax)],{ppadplus:Math.max(e._xpadplus,a),ppadminus:Math.max(e._xpadminus,o)})):(a=e.ax?a+e.ax:a,o=e.ax?o-e.ax:o,i.expand(s,[s.r2c(e.x)],{ppadplus:Math.max(e._xpadplus,r,a),ppadminus:Math.max(e._xpadminus,n,o)}))),l&&l.autorange&&(r=c-e.yshift,n=c+e.yshift,a=u-e.yshift,o=u+e.yshift,e.ayref===e.yref?(i.expand(l,[l.r2c(e.y)],{ppadplus:r,ppadminus:n}),i.expand(l,[l.r2c(e.ay)],{ppadplus:Math.max(e._ypadplus,a),ppadminus:Math.max(e._ypadminus,o)})):(a=e.ay?a+e.ay:a,o=e.ay?o-e.ay:o,i.expand(l,[l.r2c(e.y)],{ppadplus:Math.max(e._ypadplus,r,a),ppadminus:Math.max(e._ypadminus,n,o)})))})}e.exports=function(t){var e=t._fullLayout,r=n.filterVisible(e.annotations);if(r.length&&t._fullData.length){var s={};for(var l in r.forEach(function(t){s[t.xref]=1,s[t.yref]=1}),s){var c=i.getFromId(t,l);if(c&&c.autorange)return n.syncOrAsync([a,o],t)}}}},{"../../lib":724,"../../plots/cartesian/axes":770,"./draw":587}],583:[function(t,e,r){"use strict";var n=t("../../plotly");function i(t,e){var r,n,i,o,s,l,c,u=t._fullLayout.annotations,f=[],h=[],d=[],p=(e||[]).length;for(r=0;r<u.length;r++)if(o=(i=u[r]).clicktoshow){for(n=0;n<p;n++)if(l=(s=e[n]).xaxis,c=s.yaxis,l._id===i.xref&&c._id===i.yref&&l.d2r(s.x)===a(i._xclick,l)&&c.d2r(s.y)===a(i._yclick,c)){(i.visible?"onout"===o?h:d:f).push(r);break}n===p&&i.visible&&"onout"===o&&h.push(r)}return{on:f,off:h,explicitOff:d}}function a(t,e){return"log"===e.type?e.l2r(t):e.d2r(t)}e.exports={hasClickToShow:function(t,e){var r=i(t,e);return r.on.length>0||r.explicitOff.length>0},onClick:function(t,e){var r,a=i(t,e),o=a.on,s=a.off.concat(a.explicitOff),l={};if(!o.length&&!s.length)return;for(r=0;r<o.length;r++)l["annotations["+o[r]+"].visible"]=!0;for(r=0;r<s.length;r++)l["annotations["+s[r]+"].visible"]=!1;return n.update(t,{},l)}}},{"../../plotly":765}],584:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../color");e.exports=function(t,e,r,a){a("opacity");var o=a("bgcolor"),s=a("bordercolor"),l=i.opacity(s);a("borderpad");var c=a("borderwidth"),u=a("showarrow");if(a("text",u?" ":r._dfltTitle.annotation),a("textangle"),n.coerceFont(a,"font",r.font),a("width"),a("align"),a("height")&&a("valign"),u){var f,h,d=a("arrowside");-1!==d.indexOf("end")&&(f=a("arrowhead"),h=a("arrowsize")),-1!==d.indexOf("start")&&(a("startarrowhead",f),a("startarrowsize",h)),a("arrowcolor",l?e.bordercolor:i.defaultLine),a("arrowwidth",2*(l&&c||1)),a("standoff"),a("startstandoff")}var p=a("hovertext"),m=r.hoverlabel||{};if(p){var v=a("hoverlabel.bgcolor",m.bgcolor||(i.opacity(o)?i.rgb(o):i.defaultLine)),g=a("hoverlabel.bordercolor",m.bordercolor||i.contrast(v));n.coerceFont(a,"hoverlabel.font",{family:m.font.family,size:m.font.size,color:m.font.color||g})}a("captureevents",!!p)}},{"../../lib":724,"../color":598}],585:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib/to_log_range");e.exports=function(t,e,r,a){e=e||{};var o="log"===r&&"linear"===e.type,s="linear"===r&&"log"===e.type;if(o||s)for(var l,c,u=t._fullLayout.annotations,f=e._id.charAt(0),h=0;h<u.length;h++)l=u[h],c="annotations["+h+"].",l[f+"ref"]===e._id&&d(f),l["a"+f+"ref"]===e._id&&d("a"+f);function d(t){var r=l[t],s=null;s=o?i(r,e.range):Math.pow(10,r),n(s)||(s=null),a(c+t,s)}}},{"../../lib/to_log_range":749,"fast-isnumeric":140}],586:[function(t,e,r){"use strict";var n=t("../../plots/array_container_defaults"),i=t("./annotation_defaults");e.exports=function(t,e){n(t,e,{name:"annotations",handleItemDefaults:i})}},{"../../plots/array_container_defaults":767,"./annotation_defaults":579}],587:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../plotly"),a=t("../../plots/plots"),o=t("../../lib"),s=t("../../plots/cartesian/axes"),l=t("../color"),c=t("../drawing"),u=t("../fx"),f=t("../../lib/svg_text_utils"),h=t("../../lib/setcursor"),d=t("../dragelement"),p=t("./draw_arrow_head");function m(t,e){var r=t._fullLayout.annotations[e]||{};v(t,r,e,!1,s.getFromId(t,r.xref),s.getFromId(t,r.yref))}function v(t,e,r,a,s,m){var v,g,y=t._fullLayout,b=t._fullLayout._size,x=t._context.edits;a?(v="annotation-"+a,g=a+".annotations["+r+"]"):(v="annotation",g="annotations["+r+"]"),y._infolayer.selectAll("."+v+'[data-index="'+r+'"]').remove();var _="clip"+y._uid+"_ann"+r;if(e._input&&!1!==e.visible){var w={x:{},y:{}},M=+e.textangle||0,k=y._infolayer.append("g").classed(v,!0).attr("data-index",String(r)).style("opacity",e.opacity),A=k.append("g").classed("annotation-text-g",!0),T=x[e.showarrow?"annotationTail":"annotationPosition"],E=e.captureevents||x.annotationText||T,S=A.append("g").style("pointer-events",E?"all":null).call(h,"default").on("click",function(){t._dragging=!1;var i={index:r,annotation:e._input,fullAnnotation:e,event:n.event};a&&(i.subplotId=a),t.emit("plotly_clickannotation",i)});e.hovertext&&S.on("mouseover",function(){var r=e.hoverlabel,n=r.font,i=this.getBoundingClientRect(),a=t.getBoundingClientRect();u.loneHover({x0:i.left-a.left,x1:i.right-a.left,y:(i.top+i.bottom)/2-a.top,text:e.hovertext,color:r.bgcolor,borderColor:r.bordercolor,fontFamily:n.family,fontSize:n.size,fontColor:n.color},{container:y._hoverlayer.node(),outerContainer:y._paper.node(),gd:t})}).on("mouseout",function(){u.loneUnhover(y._hoverlayer.node())});var L=e.borderwidth,C=e.borderpad,P=L+C,z=S.append("rect").attr("class","bg").style("stroke-width",L+"px").call(l.stroke,e.bordercolor).call(l.fill,e.bgcolor),O=e.width||e.height,D=y._topclips.selectAll("#"+_).data(O?[0]:[]);D.enter().append("clipPath").classed("annclip",!0).attr("id",_).append("rect"),D.exit().remove();var I=e.font,R=S.append("text").classed("annotation-text",!0).text(e.text);x.annotationText?R.call(f.makeEditable,{delegate:S,gd:t}).call(N).on("edit",function(r){e.text=r,this.call(N);var n={};n[g+".text"]=e.text,s&&s.autorange&&(n[s._name+".autorange"]=!0),m&&m.autorange&&(n[m._name+".autorange"]=!0),i.relayout(t,n)}):R.call(N)}else n.selectAll("#"+_).remove();function N(r){return r.call(c.font,I).attr({"text-anchor":{left:"start",right:"end"}[e.align]||"middle"}),f.convertToTspans(r,t,F),r}function F(){var r=R.selectAll("a");1===r.size()&&r.text()===R.text()&&S.insert("a",":first-child").attr({"xlink:xlink:href":r.attr("xlink:href"),"xlink:xlink:show":r.attr("xlink:show")}).style({cursor:"pointer"}).node().appendChild(z.node());var n=S.select(".annotation-text-math-group"),u=!n.empty(),v=c.bBox((u?n:R).node()),E=v.width,C=v.height,I=e.width||E,N=e.height||C,F=Math.round(I+2*P),j=Math.round(N+2*P);function B(t,e){return"auto"===e&&(e=t<1/3?"left":t>2/3?"right":"center"),{center:0,middle:0,left:.5,bottom:-.5,right:-.5,top:.5}[e]}e._w=I,e._h=N;for(var U=!1,V=["x","y"],q=0;q<V.length;q++){var H,G,Y,W,X,Z=V[q],J=e[Z+"ref"]||Z,K=e["a"+Z+"ref"],Q={x:s,y:m}[Z],$=(M+("x"===Z?0:-90))*Math.PI/180,tt=F*Math.cos($),et=j*Math.sin($),rt=Math.abs(tt)+Math.abs(et),nt=e[Z+"anchor"],it=e[Z+"shift"]*("x"===Z?1:-1),at=w[Z];if(Q){var ot=Q.r2fraction(e[Z]);if((t._dragging||!Q.autorange)&&(ot<0||ot>1)&&(K===J?((ot=Q.r2fraction(e["a"+Z]))<0||ot>1)&&(U=!0):U=!0,U))continue;H=Q._offset+Q.r2p(e[Z]),W=.5}else"x"===Z?(Y=e[Z],H=b.l+b.w*Y):(Y=1-e[Z],H=b.t+b.h*Y),W=e.showarrow?.5:Y;if(e.showarrow){at.head=H;var st=e["a"+Z];X=tt*B(.5,e.xanchor)-et*B(.5,e.yanchor),K===J?(at.tail=Q._offset+Q.r2p(st),G=X):(at.tail=H+st,G=X+st),at.text=at.tail+X;var lt=y["x"===Z?"width":"height"];if("paper"===J&&(at.head=o.constrain(at.head,1,lt-1)),"pixel"===K){var ct=-Math.max(at.tail-3,at.text),ut=Math.min(at.tail+3,at.text)-lt;ct>0?(at.tail+=ct,at.text+=ct):ut>0&&(at.tail-=ut,at.text-=ut)}at.tail+=it,at.head+=it}else G=X=rt*B(W,nt),at.text=H+X;at.text+=it,X+=it,G+=it,e["_"+Z+"padplus"]=rt/2+G,e["_"+Z+"padminus"]=rt/2-G,e["_"+Z+"size"]=rt,e["_"+Z+"shift"]=X}if(U)S.remove();else{var ft=0,ht=0;if("left"!==e.align&&(ft=(I-E)*("center"===e.align?.5:1)),"top"!==e.valign&&(ht=(N-C)*("middle"===e.valign?.5:1)),u)n.select("svg").attr({x:P+ft-1,y:P+ht}).call(c.setClipUrl,O?_:null);else{var dt=P+ht-v.top,pt=P+ft-v.left;R.call(f.positionText,pt,dt).call(c.setClipUrl,O?_:null)}D.select("rect").call(c.setRect,P,P,I,N),z.call(c.setRect,L/2,L/2,F-L,j-L),S.call(c.setTranslate,Math.round(w.x.text-F/2),Math.round(w.y.text-j/2)),A.attr({transform:"rotate("+M+","+w.x.text+","+w.y.text+")"});var mt,vt,gt=function(r,n){k.selectAll(".annotation-arrow-g").remove();var u=w.x.head,f=w.y.head,h=w.x.tail+r,v=w.y.tail+n,y=w.x.text+r,_=w.y.text+n,T=o.rotationXYMatrix(M,y,_),E=o.apply2DTransform(T),L=o.apply2DTransform2(T),C=+z.attr("width"),P=+z.attr("height"),O=y-.5*C,D=O+C,I=_-.5*P,R=I+P,N=[[O,I,O,R],[O,R,D,R],[D,R,D,I],[D,I,O,I]].map(L);if(!N.reduce(function(t,e){return t^!!o.segmentsIntersect(u,f,u+1e6,f+1e6,e[0],e[1],e[2],e[3])},!1)){N.forEach(function(t){var e=o.segmentsIntersect(h,v,u,f,t[0],t[1],t[2],t[3]);e&&(h=e.x,v=e.y)});var F=e.arrowwidth,j=e.arrowcolor,B=e.arrowside,U=k.append("g").style({opacity:l.opacity(j)}).classed("annotation-arrow-g",!0),V=U.append("path").attr("d","M"+h+","+v+"L"+u+","+f).style("stroke-width",F+"px").call(l.stroke,l.rgb(j));if(p(V,B,e),x.annotationPosition&&V.node().parentNode&&!a){var q=u,H=f;if(e.standoff){var G=Math.sqrt(Math.pow(u-h,2)+Math.pow(f-v,2));q+=e.standoff*(h-u)/G,H+=e.standoff*(v-f)/G}var Y,W,X,Z=U.append("path").classed("annotation-arrow",!0).classed("anndrag",!0).attr({d:"M3,3H-3V-3H3ZM0,0L"+(h-q)+","+(v-H),transform:"translate("+q+","+H+")"}).style("stroke-width",F+6+"px").call(l.stroke,"rgba(0,0,0,0)").call(l.fill,"rgba(0,0,0,0)");d.init({element:Z.node(),gd:t,prepFn:function(){var t=c.getTranslate(S);W=t.x,X=t.y,Y={},s&&s.autorange&&(Y[s._name+".autorange"]=!0),m&&m.autorange&&(Y[m._name+".autorange"]=!0)},moveFn:function(t,r){var n=E(W,X),i=n[0]+t,a=n[1]+r;S.call(c.setTranslate,i,a),Y[g+".x"]=s?s.p2r(s.r2p(e.x)+t):e.x+t/b.w,Y[g+".y"]=m?m.p2r(m.r2p(e.y)+r):e.y-r/b.h,e.axref===e.xref&&(Y[g+".ax"]=s.p2r(s.r2p(e.ax)+t)),e.ayref===e.yref&&(Y[g+".ay"]=m.p2r(m.r2p(e.ay)+r)),U.attr("transform","translate("+t+","+r+")"),A.attr({transform:"rotate("+M+","+i+","+a+")"})},doneFn:function(){i.relayout(t,Y);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}};if(e.showarrow&&gt(0,0),T)d.init({element:S.node(),gd:t,prepFn:function(){vt=A.attr("transform"),mt={}},moveFn:function(t,r){var n="pointer";if(e.showarrow)e.axref===e.xref?mt[g+".ax"]=s.p2r(s.r2p(e.ax)+t):mt[g+".ax"]=e.ax+t,e.ayref===e.yref?mt[g+".ay"]=m.p2r(m.r2p(e.ay)+r):mt[g+".ay"]=e.ay+r,gt(t,r);else{if(a)return;if(s)mt[g+".x"]=e.x+t/s._m;else{var i=e._xsize/b.w,o=e.x+(e._xshift-e.xshift)/b.w-i/2;mt[g+".x"]=d.align(o+t/b.w,i,0,1,e.xanchor)}if(m)mt[g+".y"]=e.y+r/m._m;else{var l=e._ysize/b.h,c=e.y-(e._yshift+e.yshift)/b.h-l/2;mt[g+".y"]=d.align(c-r/b.h,l,0,1,e.yanchor)}s&&m||(n=d.getCursor(s?.5:mt[g+".x"],m?.5:mt[g+".y"],e.xanchor,e.yanchor))}A.attr({transform:"translate("+t+","+r+")"+vt}),h(S,n)},doneFn:function(){h(S),i.relayout(t,mt);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}}e.exports={draw:function(t){var e=t._fullLayout;e._infolayer.selectAll(".annotation").remove();for(var r=0;r<e.annotations.length;r++)e.annotations[r].visible&&m(t,r);return a.previousPromises(t)},drawOne:m,drawRaw:v}},{"../../lib":724,"../../lib/setcursor":743,"../../lib/svg_text_utils":747,"../../plotly":765,"../../plots/cartesian/axes":770,"../../plots/plots":833,"../color":598,"../dragelement":620,"../drawing":623,"../fx":640,"./draw_arrow_head":588,d3:128}],588:[function(t,e,r){"use strict";var n=t("d3"),i=t("../color"),a=t("./arrow_paths");e.exports=function(t,e,r){var o,s,l,c,u=t.node(),f=a[r.arrowhead||0],h=a[r.startarrowhead||0],d=(r.arrowwidth||1)*(r.arrowsize||1),p=(r.arrowwidth||1)*(r.startarrowsize||1),m=e.indexOf("start")>=0,v=e.indexOf("end")>=0,g=f.backoff*d+r.standoff,y=h.backoff*p+r.startstandoff;if("line"===u.nodeName){o={x:+t.attr("x1"),y:+t.attr("y1")},s={x:+t.attr("x2"),y:+t.attr("y2")};var b=o.x-s.x,x=o.y-s.y;if(c=(l=Math.atan2(x,b))+Math.PI,g&&y&&g+y>Math.sqrt(b*b+x*x))return void 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mt={fullLayout:u,container:u._hoverlayer,outerContainer:u._paperdiv,event:e},vt=t._spikepoints,gt={vLinePoint:K.vLinePoint,hLinePoint:K.hLinePoint};if(t._spikepoints=gt,u._has("cartesian")&&0!==X&&0!==Z.length){var yt=Z.filter(function(t){return t.ya.showspikes}),bt=dt(yt,X);K.hLinePoint=pt(bt);var xt=Z.filter(function(t){return t.xa.showspikes}),_t=dt(xt,X);K.vLinePoint=pt(_t)}if(0===Z.length){var wt=h.unhoverRaw(t,e);return!u._has("cartesian")||null===K.hLinePoint&&null===K.vLinePoint||S(vt)&&E(K,mt),wt}u._has("cartesian")&&S(vt)&&E(K,mt);Z.sort(function(t,e){return t.distance-e.distance});var Mt=t._hoverdata,kt=[];for(R=0;R<Z.length;R++){var At=Z[R];kt.push(m.makeEventData(At,At.trace,At.cd))}t._hoverdata=kt;var Tt="y"===O&&J.length>1,Et=f.combine(u.plot_bgcolor||f.background,u.paper_bgcolor),St={hovermode:O,rotateLabels:Tt,bgColor:Et,container:u._hoverlayer,outerContainer:u._paperdiv,commonLabelOpts:u.hoverlabel,hoverdistance:u.hoverdistance},Lt=k(Z,St,t);if(function(t,e,r){var n,i,a,o,s,l,c,u=0,f=t.map(function(t,n){var i=t[e];return[{i:n,dp:0,pos:t.pos,posref:t.posref,size:t.by*("x"===i._id.charAt(0)?b:1)/2,pmin:0,pmax:"x"===i._id.charAt(0)?r.width:r.height}]}).sort(function(t,e){return t[0].posref-e[0].posref});function h(t){var e=t[0],r=t[t.length-1];if(i=e.pmin-e.pos-e.dp+e.size,a=r.pos+r.dp+r.size-e.pmax,i>.01){for(s=t.length-1;s>=0;s--)t[s].dp+=i;n=!1}if(!(a<.01)){if(i<-.01){for(s=t.length-1;s>=0;s--)t[s].dp-=a;n=!1}if(n){var c=0;for(o=0;o<t.length;o++)(l=t[o]).pos+l.dp+l.size>e.pmax&&c++;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos>e.pmax-1&&(l.del=!0,c--);for(o=0;o<t.length&&!(c<=0);o++)if((l=t[o]).pos<e.pmin+1)for(l.del=!0,c--,a=2*l.size,s=t.length-1;s>=0;s--)t[s].dp-=a;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos+l.dp+l.size>e.pmax&&(l.del=!0,c--)}}}for(;!n&&u<=t.length;){for(u++,n=!0,o=0;o<f.length-1;){var 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i=r[n],a=t._hoverdata[n];if(i.curveNumber!==a.curveNumber||String(i.pointNumber)!==String(a.pointNumber))return!0}return!1}(t,0,Mt))return;Mt&&t.emit("plotly_unhover",{event:e,points:Mt});t.emit("plotly_hover",{event:e,points:t._hoverdata,xaxes:_,yaxes:w,xvals:D,yvals:I})}(t,e,r,a)})},r.loneHover=function(t,e){var r={color:t.color||f.defaultLine,x0:t.x0||t.x||0,x1:t.x1||t.x||0,y0:t.y0||t.y||0,y1:t.y1||t.y||0,xLabel:t.xLabel,yLabel:t.yLabel,zLabel:t.zLabel,text:t.text,name:t.name,idealAlign:t.idealAlign,borderColor:t.borderColor,fontFamily:t.fontFamily,fontSize:t.fontSize,fontColor:t.fontColor,trace:{index:0,hoverinfo:""},xa:{_offset:0},ya:{_offset:0},index:0},i=n.select(e.container),a=e.outerContainer?n.select(e.outerContainer):i,o={hovermode:"closest",rotateLabels:!1,bgColor:e.bgColor||f.background,container:i,outerContainer:a,hoverdistance:v.MAXDIST},s=k([r],o,e.gd);return A(s,o.rotateLabels),s.node()}},{"../../lib":724,"../../lib/events":712,"../../lib/override_cursor":735,"../../lib/svg_text_utils":747,"../../plots/cartesian/axes":770,"../../registry":854,"../color":598,"../dragelement":620,"../drawing":623,"./constants":635,"./helpers":637,d3:128,"fast-isnumeric":140,tinycolor2:526}],639:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e,r,i){r("hoverlabel.bgcolor",(i=i||{}).bgcolor),r("hoverlabel.bordercolor",i.bordercolor),r("hoverlabel.namelength",i.namelength),n.coerceFont(r,"hoverlabel.font",i.font)}},{"../../lib":724}],640:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../dragelement"),o=t("./helpers"),s=t("./layout_attributes");e.exports={moduleType:"component",name:"fx",constants:t("./constants"),schema:{layout:s},attributes:t("./attributes"),layoutAttributes:s,supplyLayoutGlobalDefaults:t("./layout_global_defaults"),supplyDefaults:t("./defaults"),supplyLayoutDefaults:t("./layout_defaults"),calc:t("./calc"),getDistanceFunction:o.getDistanceFunction,getClosest:o.getClosest,inbox:o.inbox,quadrature:o.quadrature,appendArrayPointValue:o.appendArrayPointValue,castHoverOption:function(t,e,r){return i.castOption(t,e,"hoverlabel."+r)},castHoverinfo:function(t,e,r){return i.castOption(t,r,"hoverinfo",function(r){return i.coerceHoverinfo({hoverinfo:r},{_module:t._module},e)})},hover:t("./hover").hover,unhover:a.unhover,loneHover:t("./hover").loneHover,loneUnhover:function(t){var e=i.isD3Selection(t)?t:n.select(t);e.selectAll("g.hovertext").remove(),e.selectAll(".spikeline").remove()},click:t("./click")}},{"../../lib":724,"../dragelement":620,"./attributes":632,"./calc":633,"./click":634,"./constants":635,"./defaults":636,"./helpers":637,"./hover":638,"./layout_attributes":641,"./layout_defaults":642,"./layout_global_defaults":643,d3:128}],641:[function(t,e,r){"use strict";var n=t("./constants"),i=t("../../plots/font_attributes")({editType:"none"});i.family.dflt=n.HOVERFONT,i.size.dflt=n.HOVERFONTSIZE,e.exports={dragmode:{valType:"enumerated",values:["zoom","pan","select","lasso","orbit","turntable"],dflt:"zoom",editType:"modebar"},hovermode:{valType:"enumerated",values:["x","y","closest",!1],editType:"modebar"},hoverdistance:{valType:"integer",min:-1,dflt:20,editType:"none"},spikedistance:{valType:"integer",min:-1,dflt:20,editType:"none"},hoverlabel:{bgcolor:{valType:"color",editType:"none"},bordercolor:{valType:"color",editType:"none"},font:i,namelength:{valType:"integer",min:-1,dflt:15,editType:"none"},editType:"none"}}},{"../../plots/font_attributes":797,"./constants":635}],642:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}var o;a("dragmode"),e._has("cartesian")?(e._isHoriz=function(t){for(var e=!0,r=0;r<t.length;r++){var 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p=a.selectAll("rect."+d.grabAreaMaxClassName).data([0]);p.enter().append("rect").classed(d.grabAreaMaxClassName,!0).attr(f),p.attr("height",n._height)}}e.exports=function(t){var e=t._fullLayout,r=function(t){var e=u.list({_fullLayout:t},"x",!0),r=d.name,n=[];if(t._has("gl2d"))return n;for(var i=0;i<e.length;i++){var a=e[i];a[r]&&a[r].visible&&n.push(a)}return n}(e);var s=e._infolayer.selectAll("g."+d.containerClassName).data(r,function(t){return t._name});s.enter().append("g").classed(d.containerClassName,!0).attr("pointer-events","all"),s.exit().each(function(t){var r=n.select(this),i=t[d.name];r.remove(),e._topdefs.select("#"+i._clipId).remove()}),s.exit().size()&&function(t){for(var e=t._fullLayout._pushmargin||{},r=Object.keys(e),n=0;n<r.length;n++){var i=r[n];-1!==i.indexOf(d.name)&&a.autoMargin(t,i)}}(t),0!==r.length&&s.each(function(r){var s=n.select(this),l=r[d.name],c=e[u.id2name(r.anchor)];if(l.range){var x=l.range,_=r.range;x[0]=r.l2r(Math.min(r.r2l(x[0]),r.r2l(_[0]))),x[1]=r.l2r(Math.max(r.r2l(x[1]),r.r2l(_[1]))),l._input.range=x.slice()}r.cleanRange("rangeslider.range");var w=e.margin,M=e._size,k=r.domain,A=c.domain,T=(r._boundingBox||{}).height||0;l._id=d.name+r._id,l._clipId=l._id+"-"+e._uid,l._width=M.w*(k[1]-k[0]),l._height=(e.height-w.b-w.t)*l.thickness,l._offsetShift=Math.floor(l.borderwidth/2);var E=Math.round(w.l+M.w*k[0]),S=Math.round(w.t+M.h*(1-A[0])+T+l._offsetShift+d.extraPad);s.attr("transform","translate("+E+","+S+")");var L=r.r2l(l.range[0]),C=r.r2l(l.range[1]),P=C-L;l.p2d=function(t){return t/l._width*P+L},l.d2p=function(t){return(t-L)/P*l._width},l._rl=[L,C],s.call(p,t,r,l).call(m,t,r,l).call(v,t,r,l).call(g,t,r,l).call(y,t,r,l).call(b,t,r,l),function(t,e,r,a){var s=t.select("rect."+d.slideBoxClassName).node(),l=t.select("rect."+d.grabAreaMinClassName).node(),c=t.select("rect."+d.grabAreaMaxClassName).node();t.on("mousedown",function(){var u=n.event,d=u.target,p=u.clientX,m=p-t.node().getBoundingClientRect().left,v=a.d2p(r._rl[0]),g=a.d2p(r._rl[1]),y=f.coverSlip();function b(t){var u,f,b,x=+t.clientX-p;switch(d){case s:b="ew-resize",u=v+x,f=g+x;break;case l:b="col-resize",u=v+x,f=g;break;case c:b="col-resize",u=v,f=g+x;break;default:b="ew-resize",u=m,f=m+x}if(f<u){var _=f;f=u,u=_}a._pixelMin=u,a._pixelMax=f,h(n.select(y),b),function(t,e,r,n){function a(t){return r.l2r(o.constrain(t,n._rl[0],n._rl[1]))}var s=a(n.p2d(n._pixelMin)),l=a(n.p2d(n._pixelMax));window.requestAnimationFrame(function(){i.relayout(e,r._name+".range",[s,l])})}(0,e,r,a)}y.addEventListener("mousemove",b),y.addEventListener("mouseup",function t(){y.removeEventListener("mousemove",b);y.removeEventListener("mouseup",t);o.removeElement(y)})})}(s,t,r,l),function(t,e,r,n){var i=d.handleWidth/2;function a(t){return o.constrain(t,0,n._width)}function s(t){return o.constrain(t,-i,n._width+i)}var 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n=t("../annotations/attributes"),i=t("../../traces/scatter/attributes").line,a=t("../drawing/attributes").dash,o=t("../../lib/extend").extendFlat;e.exports={_isLinkedToArray:"shape",visible:{valType:"boolean",dflt:!0,editType:"calcIfAutorange+arraydraw"},type:{valType:"enumerated",values:["circle","rect","path","line"],editType:"calcIfAutorange+arraydraw"},layer:{valType:"enumerated",values:["below","above"],dflt:"above",editType:"arraydraw"},xref:o({},n.xref,{}),x0:{valType:"any",editType:"calcIfAutorange+arraydraw"},x1:{valType:"any",editType:"calcIfAutorange+arraydraw"},yref:o({},n.yref,{}),y0:{valType:"any",editType:"calcIfAutorange+arraydraw"},y1:{valType:"any",editType:"calcIfAutorange+arraydraw"},path:{valType:"string",editType:"calcIfAutorange+arraydraw"},opacity:{valType:"number",min:0,max:1,dflt:1,editType:"arraydraw"},line:{color:o({},i.color,{editType:"arraydraw"}),width:o({},i.width,{editType:"calcIfAutorange+arraydraw"}),dash:o({},a,{editType:"arraydraw"}),editType:"calcIfAutorange+arraydraw"},fillcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"arraydraw"},editType:"arraydraw"}},{"../../lib/extend":713,"../../traces/scatter/attributes":1048,"../annotations/attributes":581,"../drawing/attributes":622}],677:[function(t,e,r){"use 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o,s,u,h,m,v,g,y,b,x,_,w,M,k,A,T,E,S,L,C,P,z,O,D,I,R,N,F,j,B,U=10,V=10,q={element:e.node(),gd:t,prepFn:function(e){D=a.getFromId(t,r.xref),I=a.getFromId(t,r.yref),R=f.getDataToPixel(t,D),N=f.getDataToPixel(t,I,!0),F=f.getPixelToData(t,D),j=f.getPixelToData(t,I,!0);var n="shapes["+i+"]";"path"===r.type?(z=r.path,O=n+".path"):(s=R(r.x0),u=N(r.y0),h=R(r.x1),m=N(r.y1),v=n+".x0",g=n+".y0",y=n+".x1",b=n+".y1");s<h?(w=s,T=n+".x0",C="x0",M=h,E=n+".x1",P="x1"):(w=h,T=n+".x1",C="x1",M=s,E=n+".x0",P="x0");u<m?(x=u,k=n+".y0",S="y0",_=m,A=n+".y1",L="y1"):(x=m,k=n+".y1",S="y1",_=u,A=n+".y0",L="y0");o={},G(e),q.moveFn="move"===B?Y:W},doneFn:function(){c(e),n.relayout(t,o)}},H=q.element.getBoundingClientRect();function G(t){var r=H.right-H.left,n=H.bottom-H.top,i=t.clientX-H.left,a=t.clientY-H.top,o=r>U&&n>V&&!t.shiftKey?l.getCursor(i/r,1-a/n):"move";c(e,o),B=o.split("-")[0]}function Y(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var l=function(t){return j(N(t)+i)};I&&"date"===I.type&&(l=f.encodeDate(l)),r.path=p(z,a,l),o[O]=r.path}else o[v]=r.x0=F(s+n),o[g]=r.y0=j(u+i),o[y]=r.x1=F(h+n),o[b]=r.y1=j(m+i);e.attr("d",d(t,r))}function W(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var s=function(t){return j(N(t)+i)};I&&"date"===I.type&&(s=f.encodeDate(s)),r.path=p(z,a,s),o[O]=r.path}else{var l=~B.indexOf("n")?x+i:x,c=~B.indexOf("s")?_+i:_,u=~B.indexOf("w")?w+n:w,h=~B.indexOf("e")?M+n:M;c-l>V&&(o[k]=r[S]=j(l),o[A]=r[L]=j(c)),h-u>U&&(o[T]=r[C]=F(u),o[E]=r[P]=F(h))}e.attr("d",d(t,r))}l.init(q),e.node().onmousemove=G}(t,m,i,e)}}function d(t,e){var r,n,o,s,l=e.type,c=a.getFromId(t,e.xref),h=a.getFromId(t,e.yref),d=t._fullLayout._size;if(c?(r=f.shapePositionToRange(c),n=function(t){return c._offset+c.r2p(r(t,!0))}):n=function(t){return d.l+d.w*t},h?(o=f.shapePositionToRange(h),s=function(t){return h._offset+h.r2p(o(t,!0))}):s=function(t){return d.t+d.h*(1-t)},"path"===l)return c&&"date"===c.type&&(n=f.decodeDate(n)),h&&"date"===h.type&&(s=f.decodeDate(s)),function(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,a=t.charAt(0),o=u.paramIsX[a],s=u.paramIsY[a],l=u.numParams[a],c=t.substr(1).replace(u.paramRE,function(t){return o[n]?t=e(t):s[n]&&(t=r(t)),++n>l&&(t="X"),t});return n>l&&(c=c.replace(/[\s,]*X.*/,""),i.log("Ignoring extra params in segment "+t)),a+c})}(e.path,n,s);var p=n(e.x0),m=n(e.x1),v=s(e.y0),g=s(e.y1);if("line"===l)return"M"+p+","+v+"L"+m+","+g;if("rect"===l)return"M"+p+","+v+"H"+m+"V"+g+"H"+p+"Z";var y=(p+m)/2,b=(v+g)/2,x=Math.abs(y-p),_=Math.abs(b-v),w="A"+x+","+_,M=y+x+","+b;return"M"+M+w+" 0 1,1 "+(y+","+(b-_))+w+" 0 0,1 "+M+"Z"}function p(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,i=t.charAt(0),a=u.paramIsX[i],o=u.paramIsY[i],s=u.numParams[i];return i+t.substr(1).replace(u.paramRE,function(t){return n>=s?t:(a[n]?t=e(t):o[n]&&(t=r(t)),n++,t)})})}e.exports={draw:function(t){var e=t._fullLayout;e._shapeUpperLayer.selectAll("path").remove(),e._shapeLowerLayer.selectAll("path").remove(),e._shapeSubplotLayers.selectAll("path").remove();for(var r=0;r<e.shapes.length;r++)e.shapes[r].visible&&h(t,r)},drawOne:h}},{"../../lib":724,"../../lib/setcursor":743,"../../plotly":765,"../../plots/cartesian/axes":770,"../color":598,"../dragelement":620,"../drawing":623,"./constants":678,"./helpers":681}],681:[function(t,e,r){"use strict";r.rangeToShapePosition=function(t){return"log"===t.type?t.r2d:function(t){return t}},r.shapePositionToRange=function(t){return"log"===t.type?t.d2r:function(t){return t}},r.decodeDate=function(t){return function(e){return e.replace&&(e=e.replace("_"," ")),t(e)}},r.encodeDate=function(t){return function(e){return t(e).replace(" ","_")}},r.getDataToPixel=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.shapePositionToRange(e);i=function(t){return e._offset+e.r2p(o(t,!0))},"date"===e.type&&(i=r.decodeDate(i))}else i=n?function(t){return a.t+a.h*(1-t)}:function(t){return a.l+a.w*t};return i},r.getPixelToData=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.rangeToShapePosition(e);i=function(t){return o(e.p2r(t-e._offset))}}else i=n?function(t){return 1-(t-a.t)/a.h}:function(t){return(t-a.l)/a.w};return i}},{}],682:[function(t,e,r){"use strict";var n=t("./draw");e.exports={moduleType:"component",name:"shapes",layoutAttributes:t("./attributes"),supplyLayoutDefaults:t("./defaults"),includeBasePlot:t("../../plots/cartesian/include_components")("shapes"),calcAutorange:t("./calc_autorange"),draw:n.draw,drawOne:n.drawOne}},{"../../plots/cartesian/include_components":780,"./attributes":676,"./calc_autorange":677,"./defaults":679,"./draw":680}],683:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../plots/cartesian/axes"),a=t("./attributes"),o=t("./helpers");e.exports=function(t,e,r,s,l){function c(r,i){return n.coerce(t,e,a,r,i)}if(s=s||{},!c("visible",!(l=l||{}).itemIsNotPlainObject))return 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n=t("../../plots/font_attributes"),i=t("../../plots/pad_attributes"),a=t("../../lib/extend").extendDeepAll,o=t("../../plot_api/edit_types").overrideAll,s=t("../../plots/animation_attributes"),l=t("./constants");e.exports=o({_isLinkedToArray:"slider",visible:{valType:"boolean",dflt:!0},active:{valType:"number",min:0,dflt:0},steps:{_isLinkedToArray:"step",method:{valType:"enumerated",values:["restyle","relayout","animate","update","skip"],dflt:"restyle"},args:{valType:"info_array",freeLength:!0,items:[{valType:"any"},{valType:"any"},{valType:"any"}]},label:{valType:"string"},value:{valType:"string"},execute:{valType:"boolean",dflt:!0}},lenmode:{valType:"enumerated",values:["fraction","pixels"],dflt:"fraction"},len:{valType:"number",min:0,dflt:1},x:{valType:"number",min:-2,max:3,dflt:0},pad:a({},i,{},{t:{dflt:20}}),xanchor:{valType:"enumerated",values:["auto","left","center","right"],dflt:"left"},y:{valType:"number",min:-2,max:3,dflt:0},yanchor:{valType:"enumerated",values:["auto","top","middle","bottom"],dflt:"top"},transition:{duration:{valType:"number",min:0,dflt:150},easing:{valType:"enumerated",values:s.transition.easing.values,dflt:"cubic-in-out"}},currentvalue:{visible:{valType:"boolean",dflt:!0},xanchor:{valType:"enumerated",values:["left","center","right"],dflt:"left"},offset:{valType:"number",dflt:10},prefix:{valType:"string"},suffix:{valType:"string"},font:n({})},font:n({}),activebgcolor:{valType:"color",dflt:l.gripBgActiveColor},bgcolor:{valType:"color",dflt:l.railBgColor},bordercolor:{valType:"color",dflt:l.railBorderColor},borderwidth:{valType:"number",min:0,dflt:l.railBorderWidth},ticklen:{valType:"number",min:0,dflt:l.tickLength},tickcolor:{valType:"color",dflt:l.tickColor},tickwidth:{valType:"number",min:0,dflt:1},minorticklen:{valType:"number",min:0,dflt:l.minorTickLength}},"arraydraw","from-root")},{"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/animation_attributes":766,"../../plots/font_attributes":797,"../../plots/pad_attributes":832,"./constants":685}],685:[function(t,e,r){"use 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s=e/n;this.vbar.call(a.setTranslate,t,e+s*this._vbarTranslateMax)}}},{"../../lib":724,"../color":598,"../drawing":623,d3:128}],696:[function(t,e,r){"use strict";e.exports={FROM_BL:{left:0,center:.5,right:1,bottom:0,middle:.5,top:1},FROM_TL:{left:0,center:.5,right:1,bottom:1,middle:.5,top:0},FROM_BR:{left:1,center:.5,right:0,bottom:0,middle:.5,top:1},LINE_SPACING:1.3,MID_SHIFT:.35,OPPOSITE_SIDE:{left:"right",right:"left",top:"bottom",bottom:"top"}}},{}],697:[function(t,e,r){"use strict";e.exports={COMPARISON_OPS:["=","!=","<",">=",">","<="],COMPARISON_OPS2:["=","<",">=",">","<="],INTERVAL_OPS:["[]","()","[)","(]","][",")(","](",")["],SET_OPS:["{}","}{"],CONSTRAINT_REDUCTION:{"=":"=","<":"<","<=":"<",">":">",">=":">","[]":"[]","()":"[]","[)":"[]","(]":"[]","][":"][",")(":"][","](":"][",")[":"]["}}},{}],698:[function(t,e,r){"use strict";e.exports={solid:[1],dot:[1,1],dash:[4,1],longdash:[8,1],dashdot:[4,1,1,1],longdashdot:[8,1,1,1]}},{}],699:[function(t,e,r){"use 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x<=_?[a,y,r[2]]:[v,b,r[2]]}(M,r,S);isFinite(k[0])&&isFinite(k[1])&&isFinite(k[2])||(k=S),e.rotate(k),S=k}}else r=p(e,T=x);h.of(this,arguments)({type:"zoom"})}),A=h.of(this,arguments),d++||A({type:"zoomstart"})}).on("zoomend",function(){var r;n.select(this).style(l),v.call(f,"zoom",null),r=h.of(this,arguments),--d||r({type:"zoomend"}),u(t,e,b)}).on("zoom.redraw",function(){t.render()}),n.rebind(f,h,"on")}function p(t,e){var r=t.invert(e);return r&&isFinite(r[0])&&isFinite(r[1])&&function(t){var e=t[0]*a,r=t[1]*a,n=Math.cos(r);return[n*Math.cos(e),n*Math.sin(e),Math.sin(r)]}(r)}function m(t,e,r,n){var i=v(r-t),a=v(n-e);return Math.sqrt(i*i+a*a)}function v(t){return(t%360+540)%360-180}function g(t,e,r){var n=r*a,i=t.slice(),o=0===e?1:0,s=2===e?1:2,l=Math.cos(n),c=Math.sin(n);return i[o]=t[o]*l-t[s]*c,i[s]=t[s]*l+t[o]*c,i}function y(t,e){for(var r=0,n=0,i=t.length;n<i;++n)r+=t[n]*e[n];return r}e.exports=function(t,e){var r=t.projection;return(e._isScoped?f:e._isClipped?d:h)(t,r)}},{"../../lib":724,d3:128}],807:[function(t,e,r){"use strict";var n=t("../registry"),i=t("./cartesian/constants").SUBPLOT_PATTERN;r.getSubplotCalcData=function(t,e,r){var i=n.subplotsRegistry[e];if(!i)return[];for(var a=i.attr,o=[],s=0;s<t.length;s++){var l=t[s];l[0].trace[a]===r&&o.push(l)}return o},r.getModuleCalcData=function(t,e){var r=[],i="string"==typeof e?n.getModule(e):e;if(!i)return r;for(var a=0;a<t.length;a++){var o=t[a],s=o[0].trace;s._module===i&&!0===s.visible&&r.push(o)}return r},r.getSubplotData=function(t,e,r){if(!n.subplotsRegistry[e])return[];var a,o,s,l=n.subplotsRegistry[e].attr,c=[];if("gl2d"===e){var u=r.match(i);o="x"+u[1],s="y"+u[2]}for(var f=0;f<t.length;f++)a=t[f],"gl2d"===e&&n.traceIs(a,"gl2d")?a[l[0]]===o&&a[l[1]]===s&&c.push(a):a[l]===r&&c.push(a);return c}},{"../registry":854,"./cartesian/constants":775}],808:[function(t,e,r){"use strict";var n=t("mouse-change"),i=t("mouse-wheel"),a=t("mouse-event-offset"),o=t("../cartesian/constants"),s=t("has-passive-events");e.exports=function(t){var e=t.mouseContainer,r=t.glplot,l=new function(t,e){this.element=t,this.plot=e,this.mouseListener=null,this.wheelListener=null,this.lastInputTime=Date.now(),this.lastPos=[0,0],this.boxEnabled=!1,this.boxInited=!1,this.boxStart=[0,0],this.boxEnd=[0,0],this.dragStart=[0,0]}(e,r);function c(){t.xaxis.autorange=!1,t.yaxis.autorange=!1}function u(e,n,i){var a,s,u=t.calcDataBox(),f=r.viewBox,h=l.lastPos[0],d=l.lastPos[1],p=o.MINDRAG*r.pixelRatio,m=o.MINZOOM*r.pixelRatio;function v(e,r,n){var i=Math.min(r,n),a=Math.max(r,n);i!==a?(u[e]=i,u[e+2]=a,l.dataBox=u,t.setRanges(u)):(t.selectBox.selectBox=[0,0,1,1],t.glplot.setDirty())}switch(n*=r.pixelRatio,i*=r.pixelRatio,i=f[3]-f[1]-i,t.fullLayout.dragmode){case"zoom":if(e){var g=n/(f[2]-f[0])*(u[2]-u[0])+u[0],y=i/(f[3]-f[1])*(u[3]-u[1])+u[1];l.boxInited||(l.boxStart[0]=g,l.boxStart[1]=y,l.dragStart[0]=n,l.dragStart[1]=i),l.boxEnd[0]=g,l.boxEnd[1]=y,l.boxInited=!0,l.boxEnabled||l.boxStart[0]===l.boxEnd[0]&&l.boxStart[1]===l.boxEnd[1]||(l.boxEnabled=!0);var b=Math.abs(l.dragStart[0]-n)<m,x=Math.abs(l.dragStart[1]-i)<m;if(!function(){for(var e=t.graphDiv._fullLayout._axisConstraintGroups,r=t.xaxis._id,n=t.yaxis._id,i=0;i<e.length;i++)if(-1!==e[i][r]){if(-1!==e[i][n])return!0;break}return!1}()||b&&x)b&&(l.boxEnd[0]=l.boxStart[0]),x&&(l.boxEnd[1]=l.boxStart[1]);else{a=l.boxEnd[0]-l.boxStart[0],s=l.boxEnd[1]-l.boxStart[1];var _=(u[3]-u[1])/(u[2]-u[0]);Math.abs(a*_)>Math.abs(s)?(l.boxEnd[1]=l.boxStart[1]+Math.abs(a)*_*(s>=0?1:-1),l.boxEnd[1]<u[1]?(l.boxEnd[1]=u[1],l.boxEnd[0]=l.boxStart[0]+(u[1]-l.boxStart[1])/Math.abs(_)):l.boxEnd[1]>u[3]&&(l.boxEnd[1]=u[3],l.boxEnd[0]=l.boxStart[0]+(u[3]-l.boxStart[1])/Math.abs(_))):(l.boxEnd[0]=l.boxStart[0]+Math.abs(s)/_*(a>=0?1:-1),l.boxEnd[0]<u[0]?(l.boxEnd[0]=u[0],l.boxEnd[1]=l.boxStart[1]+(u[0]-l.boxStart[0])*Math.abs(_)):l.boxEnd[0]>u[2]&&(l.boxEnd[0]=u[2],l.boxEnd[1]=l.boxStart[1]+(u[2]-l.boxStart[0])*Math.abs(_)))}}else l.boxEnabled?(a=l.boxStart[0]!==l.boxEnd[0],s=l.boxStart[1]!==l.boxEnd[1],a||s?(a&&(v(0,l.boxStart[0],l.boxEnd[0]),t.xaxis.autorange=!1),s&&(v(1,l.boxStart[1],l.boxEnd[1]),t.yaxis.autorange=!1),t.relayoutCallback()):t.glplot.setDirty(),l.boxEnabled=!1,l.boxInited=!1):l.boxInited&&(l.boxInited=!1);break;case"pan":l.boxEnabled=!1,l.boxInited=!1,e?(l.panning||(l.dragStart[0]=n,l.dragStart[1]=i),Math.abs(l.dragStart[0]-n)<p&&(n=l.dragStart[0]),Math.abs(l.dragStart[1]-i)<p&&(i=l.dragStart[1]),a=(h-n)*(u[2]-u[0])/(r.viewBox[2]-r.viewBox[0]),s=(d-i)*(u[3]-u[1])/(r.viewBox[3]-r.viewBox[1]),u[0]+=a,u[2]+=a,u[1]+=s,u[3]+=s,t.setRanges(u),l.panning=!0,l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations()):l.panning&&(l.panning=!1,t.relayoutCallback())}l.lastPos[0]=n,l.lastPos[1]=i}return l.mouseListener=n(e,u),e.addEventListener("touchstart",function(t){var r=a(t.changedTouches[0],e);u(0,r[0],r[1]),u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchmove",function(t){t.preventDefault();var r=a(t.changedTouches[0],e);u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchend",function(t){u(0,l.lastPos[0],l.lastPos[1]),t.preventDefault()},!!s&&{passive:!1}),l.wheelListener=i(e,function(e,n){if(!t.scrollZoom)return!1;var i=t.calcDataBox(),a=r.viewBox,o=l.lastPos[0],s=l.lastPos[1],u=Math.exp(5*n/(a[3]-a[1])),f=o/(a[2]-a[0])*(i[2]-i[0])+i[0],h=s/(a[3]-a[1])*(i[3]-i[1])+i[1];return i[0]=(i[0]-f)*u+f,i[2]=(i[2]-f)*u+f,i[1]=(i[1]-h)*u+h,i[3]=(i[3]-h)*u+h,t.setRanges(i),l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations(),t.relayoutCallback(),!0},!0),l}},{"../cartesian/constants":775,"has-passive-events":256,"mouse-change":424,"mouse-event-offset":425,"mouse-wheel":427}],809:[function(t,e,r){"use strict";var n=t("../cartesian/axes"),i=t("../../lib/html2unicode"),a=t("../../lib/str2rgbarray");function o(t){this.scene=t,this.gl=t.gl,this.pixelRatio=t.pixelRatio,this.screenBox=[0,0,1,1],this.viewBox=[0,0,1,1],this.dataBox=[-1,-1,1,1],this.borderLineEnable=[!1,!1,!1,!1],this.borderLineWidth=[1,1,1,1],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.ticks=[[],[]],this.tickEnable=[!0,!0,!1,!1],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labels=["x","y"],this.labelEnable=[!0,!0,!1,!1],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelPad=[15,15,15,15],this.labelSize=[12,12],this.labelFont=["sans-serif","sans-serif"],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.title="",this.titleEnable=!0,this.titleCenter=[0,0,0,0],this.titleAngle=0,this.titleColor=[0,0,0,1],this.titleFont="sans-serif",this.titleSize=18,this.gridLineEnable=[!0,!0],this.gridLineColor=[[0,0,0,.5],[0,0,0,.5]],this.gridLineWidth=[1,1],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[1,1],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderColor=!1,this.backgroundColor=[0,0,0,0],this.static=this.scene.staticPlot}var s=o.prototype,l=["xaxis","yaxis"];s.merge=function(t){var e,r,n,o,s,c,u,f,h,d,p;for(this.titleEnable=!1,this.backgroundColor=a(t.plot_bgcolor),d=0;d<2;++d){var m=(e=l[d]).charAt(0);for(n=(r=t[this.scene[e]._name]).title===this.scene.fullLayout._dfltTitle[m]?"":r.title,p=0;p<=2;p+=2)this.labelEnable[d+p]=!1,this.labels[d+p]=i(n),this.labelColor[d+p]=a(r.titlefont.color),this.labelFont[d+p]=r.titlefont.family,this.labelSize[d+p]=r.titlefont.size,this.labelPad[d+p]=this.getLabelPad(e,r),this.tickEnable[d+p]=!1,this.tickColor[d+p]=a((r.tickfont||{}).color),this.tickAngle[d+p]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180,this.tickPad[d+p]=this.getTickPad(r),this.tickMarkLength[d+p]=0,this.tickMarkWidth[d+p]=r.tickwidth||0,this.tickMarkColor[d+p]=a(r.tickcolor),this.borderLineEnable[d+p]=!1,this.borderLineColor[d+p]=a(r.linecolor),this.borderLineWidth[d+p]=r.linewidth||0;u=this.hasSharedAxis(r),s=this.hasAxisInDfltPos(e,r)&&!u,c=this.hasAxisInAltrPos(e,r)&&!u,o=r.mirror||!1,f=u?-1!==String(o).indexOf("all"):!!o,h=u?"allticks"===o:-1!==String(o).indexOf("ticks"),s?this.labelEnable[d]=!0:c&&(this.labelEnable[d+2]=!0),s?this.tickEnable[d]=r.showticklabels:c&&(this.tickEnable[d+2]=r.showticklabels),(s||f)&&(this.borderLineEnable[d]=r.showline),(c||f)&&(this.borderLineEnable[d+2]=r.showline),(s||h)&&(this.tickMarkLength[d]=this.getTickMarkLength(r)),(c||h)&&(this.tickMarkLength[d+2]=this.getTickMarkLength(r)),this.gridLineEnable[d]=r.showgrid,this.gridLineColor[d]=a(r.gridcolor),this.gridLineWidth[d]=r.gridwidth,this.zeroLineEnable[d]=r.zeroline,this.zeroLineColor[d]=a(r.zerolinecolor),this.zeroLineWidth[d]=r.zerolinewidth}},s.hasSharedAxis=function(t){var e=this.scene,r=e.fullLayout._subplots.gl2d;return 0!==n.findSubplotsWithAxis(r,t).indexOf(e.id)},s.hasAxisInDfltPos=function(t,e){var r=e.side;return"xaxis"===t?"bottom"===r:"yaxis"===t?"left"===r:void 0},s.hasAxisInAltrPos=function(t,e){var r=e.side;return"xaxis"===t?"top"===r:"yaxis"===t?"right"===r:void 0},s.getLabelPad=function(t,e){var r=e.titlefont.size,n=e.showticklabels;return"xaxis"===t?"top"===e.side?r*(1.5+(n?1:0))-10:r*(1.5+(n?.5:0))-10:"yaxis"===t?"right"===e.side?10+r*(1.5+(n?1:.5)):10+r*(1.5+(n?.5:0)):void 0},s.getTickPad=function(t){return"outside"===t.ticks?10+t.ticklen:15},s.getTickMarkLength=function(t){if(!t.ticks)return 0;var e=t.ticklen;return"inside"===t.ticks?-e:e},e.exports=function(t){return new o(t)}},{"../../lib/html2unicode":722,"../../lib/str2rgbarray":746,"../cartesian/axes":770}],810:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("./scene2d"),a=t("../layout_attributes"),o=t("../../constants/xmlns_namespaces"),s=t("../cartesian/constants"),l=t("../cartesian"),c=t("../../components/fx/layout_attributes"),u=t("../get_data").getSubplotData;r.name="gl2d",r.attr=["xaxis","yaxis"],r.idRoot=["x","y"],r.idRegex=s.idRegex,r.attrRegex=s.attrRegex,r.attributes=t("../cartesian/attributes"),r.supplyLayoutDefaults=function(t,e,r){e._has("cartesian")||l.supplyLayoutDefaults(t,e,r)},r.layoutAttrOverrides=n(l.layoutAttributes,"plot","from-root"),r.baseLayoutAttrOverrides=n({plot_bgcolor:a.plot_bgcolor,hoverlabel:c.hoverlabel},"plot","nested"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl2d,a=0;a<n.length;a++){var o=n[a],s=e._plots[o],l=u(r,"gl2d",o),c=s._scene2d;void 0===c&&(c=new i({id:o,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),s._scene2d=c),c.plot(l,t.calcdata,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl2d||[],a=0;a<i.length;a++){var o=i[a],s=n._plots[o];if(s._scene2d)0===u(t,"gl2d",o).length&&(s._scene2d.destroy(),delete n._plots[o])}l.clean.apply(this,arguments)},r.drawFramework=function(t){t._context.staticPlot||l.drawFramework(t)},r.toSVG=function(t){for(var e=t._fullLayout,r=e._subplots.gl2d,n=0;n<r.length;n++){var i=e._plots[r[n]]._scene2d,a=i.toImage("png");e._glimages.append("svg:image").attr({xmlns:o.svg,"xlink:href":a,x:0,y:0,width:"100%",height:"100%",preserveAspectRatio:"none"}),i.destroy()}},r.updateFx=function(t){for(var e=t._subplots.gl2d,r=0;r<e.length;r++){t._plots[e[r]]._scene2d.updateFx(t.dragmode)}}},{"../../components/fx/layout_attributes":641,"../../constants/xmlns_namespaces":704,"../../plot_api/edit_types":754,"../cartesian":781,"../cartesian/attributes":769,"../cartesian/constants":775,"../get_data":807,"../layout_attributes":824,"./scene2d":811}],811:[function(t,e,r){"use strict";var n,i,a=t("../../registry"),o=t("../../plots/cartesian/axes"),s=t("../../components/fx"),l=t("gl-plot2d"),c=t("gl-spikes2d"),u=t("gl-select-box"),f=t("webgl-context"),h=t("./convert"),d=t("./camera"),p=t("../../lib/html2unicode"),m=t("../../lib/show_no_webgl_msg"),v=t("../cartesian/constraints"),g=v.enforce,y=v.clean,b=["xaxis","yaxis"],x=t("../cartesian/constants").SUBPLOT_PATTERN;function _(t,e){this.container=t.container,this.graphDiv=t.graphDiv,this.pixelRatio=t.plotGlPixelRatio||window.devicePixelRatio,this.id=t.id,this.staticPlot=!!t.staticPlot,this.scrollZoom=this.graphDiv._context.scrollZoom,this.fullData=null,this.updateRefs(e),this.makeFramework(),this.glplotOptions=h(this),this.glplotOptions.merge(e),this.glplot=l(this.glplotOptions),this.camera=d(this),this.traces={},this.spikes=c(this.glplot),this.selectBox=u(this.glplot,{innerFill:!1,outerFill:!0}),this.lastButtonState=0,this.pickResult=null,this.isMouseOver=!0,this.bounds=[1/0,1/0,-1/0,-1/0],this.stopped=!1,this.redraw=this.draw.bind(this),this.redraw()}e.exports=_;var w=_.prototype;w.makeFramework=function(){if(this.staticPlot){if(!(i||(n=document.createElement("canvas"),i=f({canvas:n,preserveDrawingBuffer:!1,premultipliedAlpha:!0,antialias:!0}))))throw new Error("Error creating static canvas/context for image server");this.canvas=n,this.gl=i}else{var t=this.container.querySelector(".gl-canvas-focus"),e=f({canvas:t,preserveDrawingBuffer:!0,premultipliedAlpha:!0});e||m(this),this.canvas=t,this.gl=e}var r=this.canvas;r.style.width="100%",r.style.height="100%",r.style.position="absolute",r.style.top="0px",r.style.left="0px",r.style["pointer-events"]="none",this.updateSize(r),r.className+=" user-select-none";var a=this.svgContainer=document.createElementNS("http://www.w3.org/2000/svg","svg");a.style.position="absolute",a.style.top=a.style.left="0px",a.style.width=a.style.height="100%",a.style["z-index"]=20,a.style["pointer-events"]="none";var o=this.mouseContainer=document.createElement("div");o.style.position="absolute",o.style["pointer-events"]="auto",this.pickCanvas=this.container.querySelector(".gl-canvas-pick");var s=this.container;s.appendChild(a),s.appendChild(o);var l=this;o.addEventListener("mouseout",function(){l.isMouseOver=!1,l.unhover()}),o.addEventListener("mouseover",function(){l.isMouseOver=!0})},w.toImage=function(t){t||(t="png"),this.stopped=!0,this.staticPlot&&this.container.appendChild(n),this.updateSize(this.canvas);var e=this.glplot.gl,r=e.drawingBufferWidth,i=e.drawingBufferHeight;e.clearColor(1,1,1,0),e.clear(e.COLOR_BUFFER_BIT|e.DEPTH_BUFFER_BIT),this.glplot.setDirty(),this.glplot.draw(),e.bindFramebuffer(e.FRAMEBUFFER,null);var a=new Uint8Array(r*i*4);e.readPixels(0,0,r,i,e.RGBA,e.UNSIGNED_BYTE,a);for(var o=0,s=i-1;o<s;++o,--s)for(var l=0;l<r;++l)for(var c=0;c<4;++c){var u=a[4*(r*o+l)+c];a[4*(r*o+l)+c]=a[4*(r*s+l)+c],a[4*(r*s+l)+c]=u}var f=document.createElement("canvas");f.width=r,f.height=i;var h,d=f.getContext("2d"),p=d.createImageData(r,i);switch(p.data.set(a),d.putImageData(p,0,0),t){case"jpeg":h=f.toDataURL("image/jpeg");break;case"webp":h=f.toDataURL("image/webp");break;default:h=f.toDataURL("image/png")}return 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i={lastInputTime:this.camera.lastInputTime};i[e._name]=e.range.slice(0),i[r._name]=r.range.slice(0),t.emit("plotly_relayout",i)},w.cameraChanged=function(){var t=this.camera;this.glplot.setDataBox(this.calcDataBox());var e=this.computeTickMarks();(function(t,e){for(var r=0;r<2;++r){var n=t[r],i=e[r];if(n.length!==i.length)return!0;for(var a=0;a<n.length;++a)if(n[a].x!==i[a].x)return!0}return!1})(e,this.glplotOptions.ticks)&&(this.glplotOptions.ticks=e,this.glplotOptions.dataBox=t.dataBox,this.glplot.update(this.glplotOptions),this.handleAnnotations())},w.handleAnnotations=function(){for(var t=this.graphDiv,e=this.fullLayout.annotations,r=0;r<e.length;r++){var n=e[r];n.xref===this.xaxis._id&&n.yref===this.yaxis._id&&a.getComponentMethod("annotations","drawOne")(t,r)}},w.destroy=function(){if(this.glplot){var t=this.traces;t&&Object.keys(t).map(function(e){t[e].dispose(),delete 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e=this.xaxis,r=this.yaxis,n=e.l2r,i=r.l2r;e.range=[n(t[0]),n(t[2])],r.range=[i(t[1]),i(t[3])]},w.updateTraces=function(t,e){var r,n,i,a=Object.keys(this.traces);this.fullData=t;t:for(r=0;r<a.length;r++){var o=a[r],s=this.traces[o];for(n=0;n<t.length;n++)if((i=t[n]).uid===o&&i.type===s.type)continue t;s.dispose(),delete this.traces[o]}for(r=0;r<t.length;r++){i=t[r];var l=e[r],c=this.traces[i.uid];c?c.update(i,l):(c=i._module.plot(this,i,l),this.traces[i.uid]=c)}this.glplot.objects.sort(function(t,e){return t._trace.index-e._trace.index})},w.updateFx=function(t){"lasso"===t||"select"===t?(this.pickCanvas.style["pointer-events"]="none",this.mouseContainer.style["pointer-events"]="none"):(this.pickCanvas.style["pointer-events"]="auto",this.mouseContainer.style["pointer-events"]="auto"),this.mouseContainer.style.cursor="pan"===t?"move":"zoom"===t?"crosshair":null},w.emitPointAction=function(t,e){for(var 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v=this.fullData[m.trace.index]||{},g=m.pointIndex,y=s.castHoverinfo(v,i,g);if(y&&"all"!==y){var b=y.split("+");-1===b.indexOf("x")&&(m.traceCoord[0]=void 0),-1===b.indexOf("y")&&(m.traceCoord[1]=void 0),-1===b.indexOf("z")&&(m.traceCoord[2]=void 0),-1===b.indexOf("text")&&(m.textLabel=void 0),-1===b.indexOf("name")&&(m.name=void 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n=t("../../plot_api/edit_types").overrideAll,i=t("../../components/fx/layout_attributes"),a=t("./scene"),o=t("../get_data").getSubplotData,s=t("../../lib"),l=t("../../constants/xmlns_namespaces");r.name="gl3d",r.attr="scene",r.idRoot="scene",r.idRegex=r.attrRegex=s.counterRegex("scene"),r.attributes=t("./layout/attributes"),r.layoutAttributes=t("./layout/layout_attributes"),r.baseLayoutAttrOverrides=n({hoverlabel:i.hoverlabel},"plot","nested"),r.supplyLayoutDefaults=t("./layout/defaults"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl3d,i=0;i<n.length;i++){var l=n[i],c=o(r,"gl3d",l),u=e[l],f=u._scene;f||(f=new a({id:l,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),u._scene=f),f.cameraInitial||(f.cameraInitial=s.extendDeep({},u.camera)),f.plot(c,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl3d||[],a=0;a<i.length;a++){var 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d=l[h];c=t[d]||{},u=e[d]={_id:d[0]+r.scene,_name:d},o(c,u,f,r.data),s(c,u,f,{font:r.font,letter:d[0],data:r.data,showGrid:!0,bgColor:r.bgColor,calendar:r.calendar},r.fullLayout),f("gridcolor",n(u.color,r.bgColor,13600/187).toRgbString()),f("title",d[0]),u.setScale=i.noop,f("showspikes")&&(f("spikesides"),f("spikethickness"),f("spikecolor",u.color)),f("showaxeslabels"),f("showbackground")&&f("backgroundcolor")}}},{"../../../lib":724,"../../cartesian/axis_defaults":772,"../../cartesian/type_defaults":794,"./axis_attributes":815,tinycolor2:526}],817:[function(t,e,r){"use strict";var n=t("../../../lib/html2unicode"),i=t("../../../lib/str2rgbarray"),a=["xaxis","yaxis","zaxis"];function o(){this.bounds=[[-10,-10,-10],[10,10,10]],this.ticks=[[],[],[]],this.tickEnable=[!0,!0,!0],this.tickFont=["sans-serif","sans-serif","sans-serif"],this.tickSize=[12,12,12],this.tickAngle=[0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[18,18,18],this.labels=["x","y","z"],this.labelEnable=[!0,!0,!0],this.labelFont=["Open Sans","Open Sans","Open Sans"],this.labelSize=[20,20,20],this.labelAngle=[0,0,0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[30,30,30],this.lineEnable=[!0,!0,!0],this.lineMirror=[!1,!1,!1],this.lineWidth=[1,1,1],this.lineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.lineTickEnable=[!0,!0,!0],this.lineTickMirror=[!1,!1,!1],this.lineTickLength=[10,10,10],this.lineTickWidth=[1,1,1],this.lineTickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.gridEnable=[!0,!0,!0],this.gridWidth=[1,1,1],this.gridColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroEnable=[!0,!0,!0],this.zeroLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroLineWidth=[2,2,2],this.backgroundEnable=[!0,!0,!0],this.backgroundColor=[[.8,.8,.8,.5],[.8,.8,.8,.5],[.8,.8,.8,.5]],this._defaultTickPad=this.tickPad.slice(),this._defaultLabelPad=this.labelPad.slice(),this._defaultLineTickLength=this.lineTickLength.slice()}o.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[a[e]];r.visible?(this.labels[e]=n(r.title),"titlefont"in r&&(r.titlefont.color&&(this.labelColor[e]=i(r.titlefont.color)),r.titlefont.family&&(this.labelFont[e]=r.titlefont.family),r.titlefont.size&&(this.labelSize[e]=r.titlefont.size)),"showline"in r&&(this.lineEnable[e]=r.showline),"linecolor"in r&&(this.lineColor[e]=i(r.linecolor)),"linewidth"in r&&(this.lineWidth[e]=r.linewidth),"showgrid"in r&&(this.gridEnable[e]=r.showgrid),"gridcolor"in r&&(this.gridColor[e]=i(r.gridcolor)),"gridwidth"in r&&(this.gridWidth[e]=r.gridwidth),"log"===r.type?this.zeroEnable[e]=!1:"zeroline"in r&&(this.zeroEnable[e]=r.zeroline),"zerolinecolor"in r&&(this.zeroLineColor[e]=i(r.zerolinecolor)),"zerolinewidth"in r&&(this.zeroLineWidth[e]=r.zerolinewidth),"ticks"in r&&r.ticks?this.lineTickEnable[e]=!0:this.lineTickEnable[e]=!1,"ticklen"in r&&(this.lineTickLength[e]=this._defaultLineTickLength[e]=r.ticklen),"tickcolor"in r&&(this.lineTickColor[e]=i(r.tickcolor)),"tickwidth"in r&&(this.lineTickWidth[e]=r.tickwidth),"tickangle"in r&&(this.tickAngle[e]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180),"showticklabels"in r&&(this.tickEnable[e]=r.showticklabels),"tickfont"in r&&(r.tickfont.color&&(this.tickColor[e]=i(r.tickfont.color)),r.tickfont.family&&(this.tickFont[e]=r.tickfont.family),r.tickfont.size&&(this.tickSize[e]=r.tickfont.size)),"mirror"in r?-1!==["ticks","all","allticks"].indexOf(r.mirror)?(this.lineTickMirror[e]=!0,this.lineMirror[e]=!0):!0===r.mirror?(this.lineTickMirror[e]=!1,this.lineMirror[e]=!0):(this.lineTickMirror[e]=!1,this.lineMirror[e]=!1):this.lineMirror[e]=!1,"showbackground"in r&&!1!==r.showbackground?(this.backgroundEnable[e]=!0,this.backgroundColor[e]=i(r.backgroundcolor)):this.backgroundEnable[e]=!1):(this.tickEnable[e]=!1,this.labelEnable[e]=!1,this.lineEnable[e]=!1,this.lineTickEnable[e]=!1,this.gridEnable[e]=!1,this.zeroEnable[e]=!1,this.backgroundEnable[e]=!1)}},e.exports=function(t){var e=new o;return e.merge(t),e}},{"../../../lib/html2unicode":722,"../../../lib/str2rgbarray":746}],818:[function(t,e,r){"use strict";var n=t("../../../lib"),i=t("../../../components/color"),a=t("../../../registry"),o=t("../../subplot_defaults"),s=t("./axis_defaults"),l=t("./layout_attributes");function c(t,e,r,n){for(var o=r("bgcolor"),l=i.combine(o,n.paper_bgcolor),c=["up","center","eye"],u=0;u<c.length;u++)r("camera."+c[u]+".x"),r("camera."+c[u]+".y"),r("camera."+c[u]+".z");var f=!!r("aspectratio.x")&&!!r("aspectratio.y")&&!!r("aspectratio.z"),h=r("aspectmode",f?"manual":"auto");f||(t.aspectratio=e.aspectratio={x:1,y:1,z:1},"manual"===h&&(e.aspectmode="auto"),t.aspectmode=e.aspectmode),s(t,e,{font:n.font,scene:n.id,data:n.fullData,bgColor:l,calendar:n.calendar,fullLayout:n.fullLayout}),a.getComponentMethod("annotations3d","handleDefaults")(t,e,n),r("dragmode",n.getDfltFromLayout("dragmode")),r("hovermode",n.getDfltFromLayout("hovermode"))}e.exports=function(t,e,r){var i=e._basePlotModules.length>1;o(t,e,r,{type:"gl3d",attributes:l,handleDefaults:c,fullLayout:e,font:e.font,fullData:r,getDfltFromLayout:function(e){if(!i)return n.validate(t[e],l[e])?t[e]:void 0},paper_bgcolor:e.paper_bgcolor,calendar:e.calendar})}},{"../../../components/color":598,"../../../lib":724,"../../../registry":854,"../../subplot_defaults":846,"./axis_defaults":816,"./layout_attributes":819}],819:[function(t,e,r){"use strict";var n=t("./axis_attributes"),i=t("../../domain_attributes"),a=t("../../../lib/extend").extendFlat,o=t("../../../lib").counterRegex;function s(t,e,r){return{x:{valType:"number",dflt:t,editType:"camera"},y:{valType:"number",dflt:e,editType:"camera"},z:{valType:"number",dflt:r,editType:"camera"},editType:"camera"}}e.exports={_arrayAttrRegexps:[o("scene",".annotations",!0)],bgcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"plot"},camera:{up:a(s(0,0,1),{}),center:a(s(0,0,0),{}),eye:a(s(1.25,1.25,1.25),{}),editType:"camera"},domain:i({name:"scene",editType:"plot"}),aspectmode:{valType:"enumerated",values:["auto","cube","data","manual"],dflt:"auto",editType:"plot",impliedEdits:{"aspectratio.x":void 0,"aspectratio.y":void 0,"aspectratio.z":void 0}},aspectratio:{x:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},y:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},z:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},editType:"plot",impliedEdits:{aspectmode:"manual"}},xaxis:n,yaxis:n,zaxis:n,dragmode:{valType:"enumerated",values:["orbit","turntable","zoom","pan",!1],dflt:"turntable",editType:"plot"},hovermode:{valType:"enumerated",values:["closest",!1],dflt:"closest",editType:"modebar"},editType:"plot",_deprecated:{cameraposition:{valType:"info_array",editType:"camera"}}}},{"../../../lib":724,"../../../lib/extend":713,"../../domain_attributes":796,"./axis_attributes":815}],820:[function(t,e,r){"use strict";var n=t("../../../lib/str2rgbarray"),i=["xaxis","yaxis","zaxis"];function a(){this.enabled=[!0,!0,!0],this.colors=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.drawSides=[!0,!0,!0],this.lineWidth=[1,1,1]}a.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[i[e]];r.visible?(this.enabled[e]=r.showspikes,this.colors[e]=n(r.spikecolor),this.drawSides[e]=r.spikesides,this.lineWidth[e]=r.spikethickness):(this.enabled[e]=!1,this.drawSides[e]=!1)}},e.exports=function(t){var e=new a;return e.merge(t),e}},{"../../../lib/str2rgbarray":746}],821:[function(t,e,r){"use strict";e.exports=function(t){for(var e=t.axesOptions,r=t.glplot.axesPixels,l=t.fullSceneLayout,c=[[],[],[]],u=0;u<3;++u){var f=l[o[u]];if(f._length=(r[u].hi-r[u].lo)*r[u].pixelsPerDataUnit/t.dataScale[u],Math.abs(f._length)===1/0)c[u]=[];else{f._input_range=f.range.slice(),f.range[0]=r[u].lo/t.dataScale[u],f.range[1]=r[u].hi/t.dataScale[u],f._m=1/(t.dataScale[u]*r[u].pixelsPerDataUnit),f.range[0]===f.range[1]&&(f.range[0]-=1,f.range[1]+=1);var h=f.tickmode;if("auto"===f.tickmode){f.tickmode="linear";var d=f.nticks||i.constrain(f._length/40,4,9);n.autoTicks(f,Math.abs(f.range[1]-f.range[0])/d)}for(var p=n.calcTicks(f),m=0;m<p.length;++m)p[m].x=p[m].x*t.dataScale[u],p[m].text=a(p[m].text);c[u]=p,f.tickmode=h}}e.ticks=c;for(var u=0;u<3;++u){s[u]=.5*(t.glplot.bounds[0][u]+t.glplot.bounds[1][u]);for(var m=0;m<2;++m)e.bounds[m][u]=t.glplot.bounds[m][u]}t.contourLevels=function(t){for(var e=new Array(3),r=0;r<3;++r){for(var n=t[r],i=new Array(n.length),a=0;a<n.length;++a)i[a]=n[a].x;e[r]=i}return e}(c)};var n=t("../../cartesian/axes"),i=t("../../../lib"),a=t("../../../lib/html2unicode"),o=["xaxis","yaxis","zaxis"],s=[0,0,0]},{"../../../lib":724,"../../../lib/html2unicode":722,"../../cartesian/axes":770}],822:[function(t,e,r){"use strict";function n(t,e){var r,n,i=[0,0,0,0];for(r=0;r<4;++r)for(n=0;n<4;++n)i[n]+=t[4*r+n]*e[r];return i}e.exports=function(t,e){return n(t.projection,n(t.view,n(t.model,[e[0],e[1],e[2],1])))}},{}],823:[function(t,e,r){"use strict";var n,i,a=t("gl-plot3d"),o=t("webgl-context"),s=t("has-passive-events"),l=t("../../registry"),c=t("../../lib"),u=t("../../plots/cartesian/axes"),f=t("../../components/fx"),h=t("../../lib/str2rgbarray"),d=t("../../lib/show_no_webgl_msg"),p=t("./camera"),m=t("./project"),v=t("./layout/convert"),g=t("./layout/spikes"),y=t("./layout/tick_marks");function b(t,e,r,l){var h={canvas:r,gl:l,container:t.container,axes:t.axesOptions,spikes:t.spikeOptions,pickRadius:10,snapToData:!0,autoScale:!0,autoBounds:!1};if(t.staticMode){if(!(i||(n=document.createElement("canvas"),i=o({canvas:n,preserveDrawingBuffer:!0,premultipliedAlpha:!0,antialias:!0}))))throw new Error("error creating static canvas/context for image server");h.pixelRatio=t.pixelRatio,h.gl=i,h.canvas=n}try{t.glplot=a(h)}catch(e){d(t)}var v=function(t){if(!1!==t.fullSceneLayout.dragmode){var e={};e[t.id+".camera"]=A(t.camera),t.saveCamera(t.graphDiv.layout),t.graphDiv.emit("plotly_relayout",e)}};if(t.glplot.canvas.addEventListener("mouseup",v.bind(null,t)),t.glplot.canvas.addEventListener("wheel",v.bind(null,t),!!s&&{passive:!1}),t.staticMode||t.glplot.canvas.addEventListener("webglcontextlost",function(t){c.warn("Lost WebGL context."),t.preventDefault()}),!t.camera){var g=t.fullSceneLayout.camera;t.camera=p(t.container,{center:[g.center.x,g.center.y,g.center.z],eye:[g.eye.x,g.eye.y,g.eye.z],up:[g.up.x,g.up.y,g.up.z],zoomMin:.1,zoomMax:100,mode:"orbit"})}return t.glplot.camera=t.camera,t.glplot.oncontextloss=function(){t.recoverContext()},t.glplot.onrender=function(t){var e,r=t.svgContainer,n=t.container.getBoundingClientRect(),i=n.width,a=n.height;r.setAttributeNS(null,"viewBox","0 0 "+i+" "+a),r.setAttributeNS(null,"width",i),r.setAttributeNS(null,"height",a),y(t),t.glplot.axes.update(t.axesOptions);for(var o,s=Object.keys(t.traces),l=null,c=t.glplot.selection,h=0;h<s.length;++h)"skip"!==(e=t.traces[s[h]]).data.hoverinfo&&e.handlePick(c)&&(l=e),e.setContourLevels&&e.setContourLevels();function d(e,r){var n=t.fullSceneLayout[e];return u.tickText(n,n.d2l(r),"hover").text}if(null!==l){var p=m(t.glplot.cameraParams,c.dataCoordinate);e=l.data;var v=c.index,g=f.castHoverinfo(e,t.fullLayout,v),b=d("xaxis",c.traceCoordinate[0]),x=d("yaxis",c.traceCoordinate[1]),_=d("zaxis",c.traceCoordinate[2]);if("all"!==g){var w=g.split("+");-1===w.indexOf("x")&&(b=void 0),-1===w.indexOf("y")&&(x=void 0),-1===w.indexOf("z")&&(_=void 0),-1===w.indexOf("text")&&(c.textLabel=void 0),-1===w.indexOf("name")&&(l.name=void 0)}t.fullSceneLayout.hovermode&&f.loneHover({x:(.5+.5*p[0]/p[3])*i,y:(.5-.5*p[1]/p[3])*a,xLabel:b,yLabel:x,zLabel:_,text:c.textLabel,name:l.name,color:f.castHoverOption(e,v,"bgcolor")||l.color,borderColor:f.castHoverOption(e,v,"bordercolor"),fontFamily:f.castHoverOption(e,v,"font.family"),fontSize:f.castHoverOption(e,v,"font.size"),fontColor:f.castHoverOption(e,v,"font.color")},{container:r,gd:t.graphDiv});var M={x:c.traceCoordinate[0],y:c.traceCoordinate[1],z:c.traceCoordinate[2],data:e._input,fullData:e,curveNumber:e.index,pointNumber:v};f.appendArrayPointValue(M,e,v);var k={points:[M]};c.buttons&&c.distance<5?t.graphDiv.emit("plotly_click",k):t.graphDiv.emit("plotly_hover",k),o=k}else f.loneUnhover(r),t.graphDiv.emit("plotly_unhover",o);t.drawAnnotations(t)}.bind(null,t),t.traces={},!0}function x(t,e){var r=document.createElement("div"),n=t.container;this.graphDiv=t.graphDiv;var i=document.createElementNS("http://www.w3.org/2000/svg","svg");i.style.position="absolute",i.style.top=i.style.left="0px",i.style.width=i.style.height="100%",i.style["z-index"]=20,i.style["pointer-events"]="none",r.appendChild(i),this.svgContainer=i,r.id=t.id,r.style.position="absolute",r.style.top=r.style.left="0px",r.style.width=r.style.height="100%",n.appendChild(r),this.fullLayout=e,this.id=t.id||"scene",this.fullSceneLayout=e[this.id],this.plotArgs=[[],{},{}],this.axesOptions=v(e[this.id]),this.spikeOptions=g(e[this.id]),this.container=r,this.staticMode=!!t.staticPlot,this.pixelRatio=t.plotGlPixelRatio||2,this.dataScale=[1,1,1],this.contourLevels=[[],[],[]],this.convertAnnotations=l.getComponentMethod("annotations3d","convert"),this.drawAnnotations=l.getComponentMethod("annotations3d","draw"),b(this)}var _=x.prototype;_.recoverContext=function(){var t=this,e=this.glplot.gl,r=this.glplot.canvas;this.glplot.dispose(),requestAnimationFrame(function n(){e.isContextLost()?requestAnimationFrame(n):b(t,t.fullLayout,r,e)?t.plot.apply(t,t.plotArgs):c.error("Catastrophic and unrecoverable WebGL error. Context lost.")})};var w=["xaxis","yaxis","zaxis"];function M(t,e,r,n,i,a){var o;if(!Array.isArray(e))return i[0][n]=Math.min(i[0][n],0),void(i[1][n]=Math.max(i[1][n],r-1));for(var s=0;s<(r||e.length);++s)if(Array.isArray(e[s]))for(var l=0;l<e[s].length;++l)o=t.d2l(e[s][l],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o));else o=t.d2l(e[s],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o))}function k(t,e,r){var n=t.fullSceneLayout;M(n.xaxis,e.x,e._xlength,0,r,e.xcalendar),M(n.yaxis,e.y,e._ylength,1,r,e.ycalendar),M(n.zaxis,e.z,e._zlength,2,r,e.zcalendar)}function A(t){return{up:{x:t.up[0],y:t.up[1],z:t.up[2]},center:{x:t.center[0],y:t.center[1],z:t.center[2]},eye:{x:t.eye[0],y:t.eye[1],z:t.eye[2]}}}_.plot=function(t,e,r){if(this.plotArgs=[t,e,r],!this.glplot.contextLost){var n,i,a,o,s,l,c=e[this.id],u=r[this.id];c.bgcolor?this.glplot.clearColor=h(c.bgcolor):this.glplot.clearColor=[0,0,0,0],this.glplot.snapToData=!0,this.fullLayout=e,this.fullSceneLayout=c,this.glplotLayout=c,this.axesOptions.merge(c),this.spikeOptions.merge(c),this.setCamera(c.camera),this.updateFx(c.dragmode,c.hovermode),this.glplot.update({}),this.setConvert(s),t?Array.isArray(t)||(t=[t]):t=[];var f=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(a=0;a<t.length;++a)!0===(n=t[a]).visible&&k(this,n,f);var d=[1,1,1];for(o=0;o<3;++o)f[0][o]>f[1][o]?d[o]=1:f[1][o]===f[0][o]?d[o]=1:d[o]=1/(f[1][o]-f[0][o]);for(this.dataScale=d,this.convertAnnotations(this),a=0;a<t.length;++a)!0===(n=t[a]).visible&&((i=this.traces[n.uid])?i.update(n):(i=n._module.plot(this,n),this.traces[n.uid]=i),i.name=n.name);var p=Object.keys(this.traces);t:for(a=0;a<p.length;++a){for(o=0;o<t.length;++o)if(t[o].uid===p[a]&&!0===t[o].visible)continue t;(i=this.traces[p[a]]).dispose(),delete this.traces[p[a]]}this.glplot.objects.sort(function(t,e){return t._trace.data.index-e._trace.data.index});var m=[[0,0,0],[0,0,0]],v=[],g={};for(a=0;a<3;++a){if((l=(s=c[w[a]]).type)in g?(g[l].acc*=d[a],g[l].count+=1):g[l]={acc:d[a],count:1},s.autorange){m[0][a]=1/0,m[1][a]=-1/0;var y=this.glplot.objects,b=this.fullSceneLayout.annotations||[],x=s._name.charAt(0);for(o=0;o<y.length;o++){var _=y[o].bounds;m[0][a]=Math.min(m[0][a],_[0][a]/d[a]),m[1][a]=Math.max(m[1][a],_[1][a]/d[a])}for(o=0;o<b.length;o++){var M=b[o];if(M.visible){var A=s.r2l(M[x]);m[0][a]=Math.min(m[0][a],A),m[1][a]=Math.max(m[1][a],A)}}if("rangemode"in s&&"tozero"===s.rangemode&&(m[0][a]=Math.min(m[0][a],0),m[1][a]=Math.max(m[1][a],0)),m[0][a]>m[1][a])m[0][a]=-1,m[1][a]=1;else{var T=m[1][a]-m[0][a];m[0][a]-=T/32,m[1][a]+=T/32}}else{var E=s.range;m[0][a]=s.r2l(E[0]),m[1][a]=s.r2l(E[1])}m[0][a]===m[1][a]&&(m[0][a]-=1,m[1][a]+=1),v[a]=m[1][a]-m[0][a],this.glplot.bounds[0][a]=m[0][a]*d[a],this.glplot.bounds[1][a]=m[1][a]*d[a]}var S=[1,1,1];for(a=0;a<3;++a){var L=g[l=(s=c[w[a]]).type];S[a]=Math.pow(L.acc,1/L.count)/d[a]}var C;if("auto"===c.aspectmode)C=Math.max.apply(null,S)/Math.min.apply(null,S)<=4?S:[1,1,1];else if("cube"===c.aspectmode)C=[1,1,1];else if("data"===c.aspectmode)C=S;else{if("manual"!==c.aspectmode)throw new Error("scene.js aspectRatio was not one of the enumerated types");var P=c.aspectratio;C=[P.x,P.y,P.z]}c.aspectratio.x=u.aspectratio.x=C[0],c.aspectratio.y=u.aspectratio.y=C[1],c.aspectratio.z=u.aspectratio.z=C[2],this.glplot.aspect=C;var z=c.domain||null,O=e._size||null;if(z&&O){var D=this.container.style;D.position="absolute",D.left=O.l+z.x[0]*O.w+"px",D.top=O.t+(1-z.y[1])*O.h+"px",D.width=O.w*(z.x[1]-z.x[0])+"px",D.height=O.h*(z.y[1]-z.y[0])+"px"}this.glplot.redraw()}},_.destroy=function(){this.glplot&&(this.camera.mouseListener.enabled=!1,this.container.removeEventListener("wheel",this.camera.wheelListener),this.camera=this.glplot.camera=null,this.glplot.dispose(),this.container.parentNode.removeChild(this.container),this.glplot=null)},_.getCamera=function(){return this.glplot.camera.view.recalcMatrix(this.camera.view.lastT()),A(this.glplot.camera)},_.setCamera=function(t){var e;this.glplot.camera.lookAt.apply(this,[[(e=t).eye.x,e.eye.y,e.eye.z],[e.center.x,e.center.y,e.center.z],[e.up.x,e.up.y,e.up.z]])},_.saveCamera=function(t){var e=this.getCamera(),r=c.nestedProperty(t,this.id+".camera"),n=r.get(),i=!1;function a(t,e,r,n){var i=["up","center","eye"],a=["x","y","z"];return e[i[r]]&&t[i[r]][a[n]]===e[i[r]][a[n]]}if(void 0===n)i=!0;else for(var 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e=t._subplots.mapbox,r=0;r<e.length;r++){t[e[r]]._subplot.updateFx(t)}}},{"../../constants/xmlns_namespaces":704,"../../lib":724,"../../plots/get_data":807,"./constants":825,"./layout_attributes":829,"./layout_defaults":830,"./mapbox":831,"mapbox-gl":315}],828:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./convert_text_opts");function a(t,e){this.mapbox=t,this.map=t.map,this.uid=t.uid+"-layer"+e,this.idSource=this.uid+"-source",this.idLayer=this.uid+"-layer",this.sourceType=null,this.source=null,this.layerType=null,this.below=null,this.visible=!1}var o=a.prototype;function s(t){var e=t.source;return n.isPlainObject(e)||"string"==typeof e&&e.length>0}o.update=function(t){this.visible?this.needsNewSource(t)?(this.updateLayer(t),this.updateSource(t)):this.needsNewLayer(t)&&this.updateLayer(t):(this.updateSource(t),this.updateLayer(t)),this.updateStyle(t),this.visible=s(t)},o.needsNewSource=function(t){return this.sourceType!==t.sourcetype||this.source!==t.source||this.layerType!==t.type},o.needsNewLayer=function(t){return this.layerType!==t.type||this.below!==t.below},o.updateSource=function(t){var e=this.map;if(e.getSource(this.idSource)&&e.removeSource(this.idSource),this.sourceType=t.sourcetype,this.source=t.source,s(t)){var r=function(t){var e,r=t.sourcetype,n=t.source,i={type:r};"geojson"===r?e="data":"vector"===r&&(e="string"==typeof n?"url":"tiles");return i[e]=n,i}(t);e.addSource(this.idSource,r)}},o.updateLayer=function(t){var e=this.map;if(e.getLayer(this.idLayer)&&e.removeLayer(this.idLayer),this.layerType=t.type,s(t)){e.addLayer({id:this.idLayer,source:this.idSource,"source-layer":t.sourcelayer||"",type:t.type},t.below);this.mapbox.setOptions(this.idLayer,"setLayoutProperty",{visibility:"visible"})}},o.updateStyle=function(t){var e=function(t){var e={},r={};switch(t.type){case"circle":n.extendFlat(r,{"circle-radius":t.circle.radius,"circle-color":t.color,"circle-opacity":t.opacity});break;case"line":n.extendFlat(r,{"line-width":t.line.width,"line-color":t.color,"line-opacity":t.opacity});break;case"fill":n.extendFlat(r,{"fill-color":t.color,"fill-outline-color":t.fill.outlinecolor,"fill-opacity":t.opacity});break;case"symbol":var a=t.symbol,o=i(a.textposition,a.iconsize);n.extendFlat(e,{"icon-image":a.icon+"-15","icon-size":a.iconsize/10,"text-field":a.text,"text-size":a.textfont.size,"text-anchor":o.anchor,"text-offset":o.offset}),n.extendFlat(r,{"icon-color":t.color,"text-color":a.textfont.color,"text-opacity":t.opacity})}return{layout:e,paint:r}}(t);s(t)&&(this.mapbox.setOptions(this.idLayer,"setLayoutProperty",e.layout),this.mapbox.setOptions(this.idLayer,"setPaintProperty",e.paint))},o.dispose=function(){var t=this.map;t.removeLayer(this.idLayer),t.removeSource(this.idSource)},e.exports=function(t,e,r){var n=new a(t,e);return n.update(r),n}},{"../../lib":724,"./convert_text_opts":826}],829:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/color").defaultLine,a=t("../domain_attributes"),o=t("../font_attributes"),s=t("../../traces/scatter/attributes").textposition,l=t("../../plot_api/edit_types").overrideAll,c=o({});c.family.dflt="Open Sans Regular, Arial Unicode MS 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n=t("mapbox-gl"),i=t("../../components/fx"),a=t("../../lib"),o=t("../../components/dragelement"),s=t("../cartesian/select"),l=t("./constants"),c=t("./layout_attributes"),u=t("./layers");function f(t){this.id=t.id,this.gd=t.gd,this.container=t.container,this.isStatic=t.staticPlot;var e=t.fullLayout;this.uid=e._uid+"-"+this.id,this.opts=e[this.id],this.div=null,this.xaxis=null,this.yaxis=null,this.createFramework(e),this.map=null,this.accessToken=null,this.styleObj=null,this.traceHash={},this.layerList=[]}var h=f.prototype;function d(t){var e=c.style.values,r=c.style.dflt,n={};return a.isPlainObject(t)?(n.id=t.id,n.style=t):"string"==typeof t?(n.id=t,n.style=-1!==e.indexOf(t)?p(t):t):(n.id=r,n.style=p(r)),n}function p(t){return l.styleUrlPrefix+t+"-"+l.styleUrlSuffix}function m(t){return[t.lon,t.lat]}e.exports=function(t){return new f(t)},h.plot=function(t,e,r){var n,i=this,a=i.opts=e[this.id];i.map&&a.accesstoken!==i.accessToken&&(i.map.remove(),i.map=null,i.styleObj=null,i.traceHash=[],i.layerList={}),n=i.map?new Promise(function(r,n){i.updateMap(t,e,r,n)}):new Promise(function(r,n){i.createMap(t,e,r,n)}),r.push(n)},h.createMap=function(t,e,r,o){var s=this,c=s.gd,u=s.opts,f=s.styleObj=d(u.style);s.accessToken=u.accesstoken;var h=s.map=new n.Map({container:s.div,style:f.style,center:m(u.center),zoom:u.zoom,bearing:u.bearing,pitch:u.pitch,interactive:!s.isStatic,preserveDrawingBuffer:s.isStatic,doubleClickZoom:!1,boxZoom:!1}),p=l.controlContainerClassName,v=s.div.getElementsByClassName(p)[0];function g(){i.loneUnhover(e._toppaper)}s.div.removeChild(v),h._canvas.canvas.style.left="0px",h._canvas.canvas.style.top="0px",s.rejectOnError(o),h.once("load",function(){s.updateData(t),s.updateLayout(e),s.resolveOnRender(r)}),s.isStatic||(h.on("moveend",function(t){if(s.map){var e=s.getView();if(u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,t.originalEvent){var r={};r[s.id]=a.extendFlat({},e),c.emit("plotly_relayout",r)}}}),h.on("mousemove",function(t){var e=s.div.getBoundingClientRect();t.clientX=t.point.x+e.left,t.clientY=t.point.y+e.top,t.target.getBoundingClientRect=function(){return e},s.xaxis.p2c=function(){return t.lngLat.lng},s.yaxis.p2c=function(){return t.lngLat.lat},i.hover(c,t,s.id)}),h.on("click",function(t){i.click(c,t.originalEvent)}),h.on("dragstart",g),h.on("zoomstart",g),h.on("dblclick",function(){var t=s.viewInitial;h.setCenter(m(t.center)),h.setZoom(t.zoom),h.setBearing(t.bearing),h.setPitch(t.pitch);var e=s.getView();u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,c.emit("plotly_doubleclick",null)}))},h.updateMap=function(t,e,r,n){var i=this,a=i.map;i.rejectOnError(n);var o=d(i.opts.style);i.styleObj.id!==o.id?(i.styleObj=o,a.setStyle(o.style),a.style.once("load",function(){i.traceHash={},i.updateData(t),i.updateLayout(e),i.resolveOnRender(r)})):(i.updateData(t),i.updateLayout(e),i.resolveOnRender(r))},h.updateData=function(t){var e,r,n,i,a=this.traceHash;for(n=0;n<t.length;n++){var o=t[n];(e=a[(r=o[0].trace).uid])?e.update(o):r._module&&(a[r.uid]=r._module.plot(this,o))}var s=Object.keys(a);t:for(n=0;n<s.length;n++){var l=s[n];for(i=0;i<t.length;i++)if(l===(r=t[i][0].trace).uid)continue t;(e=a[l]).dispose(),delete a[l]}},h.updateLayout=function(t){var e=this.map,r=this.opts;e.setCenter(m(r.center)),e.setZoom(r.zoom),e.setBearing(r.bearing),e.setPitch(r.pitch),this.updateLayers(),this.updateFramework(t),this.updateFx(t),this.map.resize()},h.resolveOnRender=function(t){var e=this.map;e.on("render",function r(){e.loaded()&&(e.off("render",r),t())})},h.rejectOnError=function(t){var e=this.map;function r(){t(new 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y=h.select(".legend-marks").selectAll("path.legend-mark").data(o);y.enter().append("path").classed("legend-mark",!0),y.attr({transform:function(t,e){return"translate("+[c/2,v(e)+c/2]+")"},d:function(t,e){var r,i,a,o=t.symbol;return a=3*(i=c),"line"===(r=o)?"M"+[[-i/2,-i/12],[i/2,-i/12],[i/2,i/12],[-i/2,i/12]]+"Z":-1!=n.svg.symbolTypes.indexOf(r)?n.svg.symbol().type(r).size(a)():n.svg.symbol().type("square").size(a)()},fill:function(t,e){return m(e)}}),y.exit().remove()}var b=n.svg.axis().scale(v).orient("right"),x=h.select("g.legend-axis").attr({transform:"translate("+[u?e.colorBandWidth:c,c/2]+")"}).call(b);return x.selectAll(".domain").style({fill:"none",stroke:"none"}),x.selectAll("line").style({fill:"none",stroke:u?e.textColor:"none"}),x.selectAll("text").style({fill:e.textColor,"font-size":e.fontSize}).text(function(t,e){return o[e].name}),r}return r.config=function(e){return arguments.length?(i(t,e),this):t},n.rebind(r,e,"on"),r},o.Legend.defaultConfig=function(t,e){return{data:["a","b","c"],legendConfig:{elements:[{symbol:"line",color:"red"},{symbol:"square",color:"yellow"},{symbol:"diamond",color:"limegreen"}],height:150,colorBandWidth:30,fontSize:12,container:"body",isContinuous:null,textColor:"grey",reverseOrder:!1}}},o.tooltipPanel=function(){var t,e,r,a={container:null,hasTick:!1,fontSize:12,color:"white",padding:5},s="tooltip-"+o.tooltipPanel.uid++,l=10,c=function(){var n=(t=a.container.selectAll("g."+s).data([0])).enter().append("g").classed(s,!0).style({"pointer-events":"none",display:"none"});return r=n.append("path").style({fill:"white","fill-opacity":.9}).attr({d:"M0 0"}),e=n.append("text").attr({dx:a.padding+l,dy:.3*+a.fontSize}),c};return c.text=function(i){var o=n.hsl(a.color).l,s=o>=.5?"#aaa":"white",u=o>=.5?"black":"white",f=i||"";e.style({fill:u,"font-size":a.fontSize+"px"}).text(f);var h=a.padding,d=e.node().getBBox(),p={fill:a.color,stroke:s,"stroke-width":"2px"},m=d.width+2*h+l,v=d.height+2*h;return r.attr({d:"M"+[[l,-v/2],[l,-v/4],[a.hasTick?0:l,0],[l,v/4],[l,v/2],[m,v/2],[m,-v/2]].join("L")+"Z"}).style(p),t.attr({transform:"translate("+[l,-v/2+2*h]+")"}),t.style({display:"block"}),c},c.move=function(e){if(t)return t.attr({transform:"translate("+[e[0],e[1]]+")"}).style({display:"block"}),c},c.hide=function(){if(t)return t.style({display:"none"}),c},c.show=function(){if(t)return t.style({display:"block"}),c},c.config=function(t){return i(a,t),c},c},o.tooltipPanel.uid=1,o.adapter={},o.adapter.plotly=function(){var t={convert:function(t,e){var r={};if(t.data&&(r.data=t.data.map(function(t,r){var n=i({},t);return[[n,["marker","color"],["color"]],[n,["marker","opacity"],["opacity"]],[n,["marker","line","color"],["strokeColor"]],[n,["marker","line","dash"],["strokeDash"]],[n,["marker","line","width"],["strokeSize"]],[n,["marker","symbol"],["dotType"]],[n,["marker","size"],["dotSize"]],[n,["marker","barWidth"],["barWidth"]],[n,["line","interpolation"],["lineInterpolation"]],[n,["showlegend"],["visibleInLegend"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e||delete n.marker,e&&delete n.groupId,e?("LinePlot"===n.geometry?(n.type="scatter",!0===n.dotVisible?(delete n.dotVisible,n.mode="lines+markers"):n.mode="lines"):"DotPlot"===n.geometry?(n.type="scatter",n.mode="markers"):"AreaChart"===n.geometry?n.type="area":"BarChart"===n.geometry&&(n.type="bar"),delete 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s=i({},t.layout);if([[s,["plot_bgcolor"],["backgroundColor"]],[s,["showlegend"],["showLegend"]],[s,["radialaxis"],["radialAxis"]],[s,["angularaxis"],["angularAxis"]],[s.angularaxis,["showline"],["gridLinesVisible"]],[s.angularaxis,["showticklabels"],["labelsVisible"]],[s.angularaxis,["nticks"],["ticksCount"]],[s.angularaxis,["tickorientation"],["tickOrientation"]],[s.angularaxis,["ticksuffix"],["ticksSuffix"]],[s.angularaxis,["range"],["domain"]],[s.angularaxis,["endpadding"],["endPadding"]],[s.radialaxis,["showline"],["gridLinesVisible"]],[s.radialaxis,["tickorientation"],["tickOrientation"]],[s.radialaxis,["ticksuffix"],["ticksSuffix"]],[s.radialaxis,["range"],["domain"]],[s.angularAxis,["showline"],["gridLinesVisible"]],[s.angularAxis,["showticklabels"],["labelsVisible"]],[s.angularAxis,["nticks"],["ticksCount"]],[s.angularAxis,["tickorientation"],["tickOrientation"]],[s.angularAxis,["ticksuffix"],["ticksSuffix"]],[s.angularAxis,["range"],["domain"]],[s.angularAxis,["endpadding"],["endPadding"]],[s.radialAxis,["showline"],["gridLinesVisible"]],[s.radialAxis,["tickorientation"],["tickOrientation"]],[s.radialAxis,["ticksuffix"],["ticksSuffix"]],[s.radialAxis,["range"],["domain"]],[s.font,["outlinecolor"],["outlineColor"]],[s.legend,["traceorder"],["reverseOrder"]],[s,["labeloffset"],["labelOffset"]],[s,["defaultcolorrange"],["defaultColorRange"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e?(void 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r=t._fullLayout,n="clip"+r._uid+e;this.clipIds.circle=n+"-circle",this.clipPaths.circle=r._clips.append("clipPath").attr("id",this.clipIds.circle),this.clipPaths.circle.append("path"),this.framework=r._polarlayer.append("g").attr("class",e),this.radialTickLayout=null,this.angularTickLayout=null}var E=T.prototype;function S(t,e,r){f.setConvert(t,r),t._min=e._min,t._max=e._max,t.setScale()}function L(t){var e=t.ticks+String(t.ticklen)+String(t.showticklabels);return"side"in t&&(e+=t.side),e}function C(t,e){if(z(e))return c.symbolFuncs[0](t);var r=t*Math.cos(x(e[0])),n=-t*Math.sin(x(e[0])),i=t*Math.cos(x(e[1])),a=-t*Math.sin(x(e[1]));return"M"+[r,n]+"A"+[t,t]+" "+(Math.abs(e[1]-e[0])<=180?[0,0,0]:[0,1,0])+" "+[i,a]}function P(t,e){return C(t,e)+(z(e)?"":"L0,0Z")}function z(t){return 360===Math.abs(t[1]-t[0])}function O(t,e,r){return e?(t.attr("display",null),t.attr(r)):t&&t.attr("display","none"),t}function D(t,e){return"translate("+t+","+e+")"}function I(t){return"rotate("+t+")"}function 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e,r,n,i,a=t[0],o=t[1]-a,s=w(a),l=s+o,c=Math.cos(x(s)),u=Math.sin(x(s)),f=Math.cos(x(l)),h=Math.sin(x(l));i=s<=90&&l>=90||s>90&&l>=450?1:u<=0&&h<=0?0:Math.max(u,h);e=s<=180&&l>=180||s>180&&l>=540?-1:c>=0&&f>=0?0:Math.min(c,f);r=s<=270&&l>=270||s>270&&l>=630?-1:u>=0&&h>=0?0:Math.min(u,h);n=l>=360?1:c<=0&&f<=0?0:Math.max(c,f);return[e,r,n,i]}(g),b=y[2]-y[0],_=y[3]-y[1],M=v/m,k=Math.abs(_/b);M>k?(s=m,p=(v-(u=m*k))/i.h/2,h=[a[0],a[1]],d=[o[0]+p,o[1]-p]):(u=v,p=(m-(s=v/k))/i.w/2,h=[a[0]+p,a[1]-p],d=[o[0],o[1]]),r.xLength2=s,r.yLength2=u,r.xDomain2=h,r.yDomain2=d;var A=r.xOffset2=i.l+i.w*h[0],T=r.yOffset2=i.t+i.h*(1-d[1]),E=r.radius=s/b,S=r.cx=A-E*y[0],L=r.cy=T+E*y[3],C=r.cxx=S-A,z=r.cyy=L-T;r.updateRadialAxis(t,e),r.updateRadialAxisTitle(t,e),r.updateAngularAxis(t,e);var O=r.radialAxis.range,I=O[1]-O[0],R=r.xaxis={type:"linear",_id:"x",range:[y[0]*I,y[2]*I],domain:h};f.setConvert(R,t),R.setScale();var 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r=this,i=r.gd,l=r.layers,u=r.radius,p=r.cx,m=r.cy,v=r.cxx,y=r.cyy,b=e.sector,w=A.angularDragBoxSize,T=d.makeDragger(l,"path","angulardrag","move"),E={element:T,gd:i};function S(t,e){return Math.atan2(y+w-e,t-v-w)}n.select(T).attr("d",function(t,e,r){var n,i,a,o=Math.abs(r[1]-r[0])<=180?0:1;function s(t,e){return[t*Math.cos(e),-t*Math.sin(e)]}function l(t,e,r){return"A"+[t,t]+" "+[0,o,r]+" "+s(t,e)}return z(r)?(n=0,a=2*Math.PI,i=Math.PI,"M"+s(t,n)+l(t,i,0)+l(t,a,0)+"ZM"+s(e,n)+l(e,i,1)+l(e,a,1)+"Z"):(n=x(r[0]),a=x(r[1]),"M"+s(t,n)+"L"+s(e,n)+l(e,a,0)+"L"+s(t,a)+l(t,n,1)+"Z")}(u,u+w,b)).attr("transform",D(p,m)).call(g,"move");var L,C,P,O,R,N,F=l.frontplot.select(".scatterlayer").selectAll(".trace"),j=F.selectAll(".point"),B=F.selectAll(".textpoint");function U(t,e){var a=S(L+t,C+e),u=_(a-N);O=P+u,l.frontplot.attr("transform",D(r.xOffset2,r.yOffset2)+I([-u,v,y])),r.clipPaths.circle.select("path").attr("transform",D(v,y)+I(u)),j.each(function(){var 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n={};n.attributes=t("./attributes"),n.layoutAttributes=t("./layout_attributes"),n.supplyDefaults=t("./defaults").supplyDefaults,n.supplyLayoutDefaults=t("./layout_defaults").supplyLayoutDefaults,n.calc=t("./calc"),n.setPositions=t("./set_positions").setPositions,n.plot=t("./plot").plot,n.style=t("./style"),n.hoverPoints=t("./hover").hoverPoints,n.selectPoints=t("./select"),n.moduleType="trace",n.name="box",n.basePlotModule=t("../../plots/cartesian"),n.categories=["cartesian","symbols","oriented","box-violin","showLegend"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"./attributes":877,"./calc":878,"./defaults":879,"./hover":880,"./layout_attributes":882,"./layout_defaults":883,"./plot":884,"./select":885,"./set_positions":886,"./style":887}],882:[function(t,e,r){"use 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.wdPos||0,h=a.bPosPxOffset||0,d=r.whiskerwidth||0,p=r.notched||!1,m=p?1-2*r.notchwidth:1;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.box").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","box").each(function(t){var e=t.pos,a=l.c2p(e+u,!0)+h,v=l.c2p(e+u-o,!0)+h,g=l.c2p(e+u+s,!0)+h,y=l.c2p(e+u-f,!0)+h,b=l.c2p(e+u+f,!0)+h,x=l.c2p(e+u-o*m,!0)+h,_=l.c2p(e+u+s*m,!0)+h,w=c.c2p(t.q1,!0),M=c.c2p(t.q3,!0),k=i.constrain(c.c2p(t.med,!0),Math.min(w,M)+1,Math.max(w,M)-1),A=c.c2p(!1===r.boxpoints?t.min:t.lf,!0),T=c.c2p(!1===r.boxpoints?t.max:t.uf,!0),E=c.c2p(t.ln,!0),S=c.c2p(t.un,!0);"h"===r.orientation?n.select(this).attr("d","M"+k+","+x+"V"+_+"M"+w+","+v+"V"+g+(p?"H"+E+"L"+k+","+_+"L"+S+","+g:"")+"H"+M+"V"+v+(p?"H"+S+"L"+k+","+x+"L"+E+","+v:"")+"ZM"+w+","+a+"H"+A+"M"+M+","+a+"H"+T+(0===d?"":"M"+A+","+y+"V"+b+"M"+T+","+y+"V"+b)):n.select(this).attr("d","M"+x+","+k+"H"+_+"M"+v+","+w+"H"+g+(p?"V"+E+"L"+_+","+k+"L"+g+","+S:"")+"V"+M+"H"+v+(p?"V"+S+"L"+x+","+k+"L"+v+","+E:"")+"ZM"+a+","+w+"V"+A+"M"+a+","+M+"V"+T+(0===d?"":"M"+y+","+A+"H"+b+"M"+y+","+T+"H"+b))})}function f(t,e,r,n){var u=e.x,f=e.y,h=n.bdPos,d=n.bPos,p=r.boxpoints||r.points;o=2e9,t.selectAll("g.points").data(function(t){return 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.bPosPxOffset||0;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.mean").data(i.identity).enter().append("path").attr("class","mean").style({fill:"none","vector-effect":"non-scaling-stroke"}).each(function(t){var e=l.c2p(t.pos+u,!0)+f,i=l.c2p(t.pos+u-o,!0)+f,a=l.c2p(t.pos+u+s,!0)+f,h=c.c2p(t.mean,!0),d=c.c2p(t.mean-t.sd,!0),p=c.c2p(t.mean+t.sd,!0);"h"===r.orientation?n.select(this).attr("d","M"+h+","+i+"V"+a+("sd"===r.boxmean?"m0,0L"+d+","+e+"L"+h+","+i+"L"+p+","+e+"Z":"")):n.select(this).attr("d","M"+i+","+h+"H"+a+("sd"===r.boxmean?"m0,0L"+e+","+d+"L"+i+","+h+"L"+e+","+p+"Z":""))})}e.exports={plot:function(t,e,r){var i=t._fullLayout,a=e.xaxis,o=e.yaxis;e.plot.select(".boxlayer").selectAll("g.trace.boxes").data(r).enter().append("g").attr("class","trace boxes").each(function(t){var e,r,s=t[0],l=s.t,c=s.trace,d=s.node3=n.select(this),p=i._numBoxes,m="group"===i.boxmode&&p>1,v=l.dPos*(1-i.boxgap)*(1-i.boxgroupgap)/(m?p:1),g=m?2*l.dPos*((l.num+.5)/p-.5)*(1-i.boxgap):0,y=v*c.whiskerwidth;!0!==c.visible||l.empty?n.select(this).remove():("h"===c.orientation?(e=o,r=a):(e=a,r=o),l.bPos=g,l.bdPos=v,l.wdPos=y,u(d,{pos:e,val:r},c,l),c.boxpoints&&f(d,{x:a,y:o},c,l),c.boxmean&&h(d,{pos:e,val:r},c,l))})},plotBoxAndWhiskers:u,plotPoints:f,plotBoxMean:h}},{"../../components/drawing":623,"../../lib":724,d3:128}],885:[function(t,e,r){"use strict";e.exports=function(t,e){var r,n,i=t.cd,a=t.xaxis,o=t.yaxis,s=[];if(!1===e)for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++)i[r].pts[n].selected=0;else for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++){var l=i[r].pts[n],c=a.c2p(l.x),u=o.c2p(l.y);e.contains([c,u])?(s.push({pointNumber:l.i,x:a.c2d(l.x),y:o.c2d(l.y)}),l.selected=1):l.selected=0}return s}},{}],886:[function(t,e,r){"use strict";var n=t("../../plots/cartesian/axes"),i=t("../../lib"),a=["v","h"];function o(t,e,r,a,o){var s,l,c,u=e.calcdata,f=e._fullLayout,h=[],d="violin"===t?"_numViolins":"_numBoxes";for(s=0;s<r.length;s++)for(c=u[r[s]],l=0;l<c.length;l++)h.push(c[l].pos);if(h.length){var p=i.distinctVals(h),m=p.minDiff/2;for(h.length===p.vals.length&&(f[d]=1),n.minDtick(a,p.minDiff,p.vals[0],!0),s=0;s<r.length;s++)(c=u[r[s]])[0].t.dPos=m;var v=(1-f[t+"gap"])*(1-f[t+"groupgap"])*m/f[d];n.expand(a,p.vals,{vpadminus:m+o[0]*v,vpadplus:m+o[1]*v})}}e.exports={setPositions:function(t,e){for(var r=t.calcdata,n=e.xaxis,i=e.yaxis,s=0;s<a.length;s++){for(var l=a[s],c="h"===l?i:n,u=[],f=0,h=0,d=0;d<r.length;d++){var p=r[d],m=p[0].t,v=p[0].trace;!0!==v.visible||"box"!==v.type||m.empty||v.orientation!==l||v.xaxis!==n._id||v.yaxis!==i._id||(u.push(d),!1!==v.boxpoints&&(f=Math.max(f,v.jitter-v.pointpos-1),h=Math.max(h,v.jitter+v.pointpos-1)))}o("box",t,u,c,[f,h])}},setPositionOffset:o}},{"../../lib":724,"../../plots/cartesian/axes":770}],887:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/color"),a=t("../../components/drawing");e.exports=function(t,e){var r=e?e[0].node3:n.select(t).selectAll("g.trace.boxes");r.style("opacity",function(t){return t[0].trace.opacity}),r.each(function(e){var r=n.select(this),o=e[0].trace,s=o.line.width;r.selectAll("path.box").style("stroke-width",s+"px").call(i.stroke,o.line.color).call(i.fill,o.fillcolor),r.selectAll("path.mean").style({"stroke-width":s,"stroke-dasharray":2*s+"px,"+s+"px"}).call(i.stroke,o.line.color);var l=r.selectAll("path.point");a.pointStyle(l,o,t),a.selectedPointStyle(l,o)})}},{"../../components/color":598,"../../components/drawing":623,d3:128}],888:[function(t,e,r){"use strict";var n=t("../../lib").extendFlat,i=t("../ohlc/attributes"),a=t("../box/attributes");function o(t){return{name:i.increasing.name,showlegend:i.increasing.showlegend,line:{color:n({},a.line.color,{dflt:t}),width:a.line.width,editType:"style"},fillcolor:a.fillcolor,editType:"style"}}e.exports={x:i.x,open:i.open,high:i.high,low:i.low,close:i.close,line:{width:n({},a.line.width,{}),editType:"style"},increasing:o(i.increasing.line.color.dflt),decreasing:o(i.decreasing.line.color.dflt),text:i.text,whiskerwidth:n({},a.whiskerwidth,{dflt:0})}},{"../../lib":724,"../box/attributes":877,"../ohlc/attributes":1006}],889:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../ohlc/ohlc_defaults"),a=t("../ohlc/direction_defaults"),o=t("../ohlc/helpers"),s=t("./attributes");function 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c=t[i],u=c.dim1,f=u.crossfilterDimensionIndex,h=c.canvasX,p=c.canvasY,g=c.dim2.crossfilterDimensionIndex,y=c.panelSizeX,b=c.panelSizeY,w=h+y;if(e||!V[f]||V[f][0]!==h||V[f][1]!==w){V[f]=[h,w];var M=q(f,g,h,p,y,b,u.crossfilterDimensionIndex,r||u.scatter?1:0,i,a,o);E.clearOnly=n,v(F,B,E,e?d.blockLineCount:C,C,M)}}},readPixel:function(t,e){return F.read({x:t,y:e,width:1,height:1,data:p}),p},readPixels:function(t,e,r,n){var i=new Uint8Array(4*r*n);return F.read({x:t,y:e,width:r,height:n,data:i}),i},destroy:function(){t.style["pointer-events"]="none",j.destroy()}}}},{"./constants":1017,glslify:253}],1021:[function(t,e,r){"use strict";var n=t("./lines"),i=t("./constants"),a=t("../../lib"),o=t("d3"),s=t("../../components/drawing"),l=t("../../lib/gup").keyFun,c=t("../../lib/gup").repeat,u=t("../../lib/gup").unwrap;function f(t){return!("visible"in t)||t.visible}function h(t){var e=t.range?t.range[0]:o.min(t.values),r=t.range?t.range[1]:o.max(t.values);return!isNaN(e)&&isFinite(e)||(e=0),!isNaN(r)&&isFinite(r)||(r=0),e===r&&(void 0===e?(e=0,r=1):0===e?(e-=1,r+=1):(e*=.9,r*=1.1)),[e,r]}function d(t,e){var r,n,i,a,o;for(r=0,i=1/0,a=(n=t.range())[0];r<n.length;r++){if((o=Math.abs(n[r]-e))>i)return a;i=o,a=n[r]}return n[n.length-1]}function p(t){return o.scale.linear().domain(h(t))}function m(t,e,r){var n=u(e),s=n.trace,l=n.lineColor,c=n.cscale,h=s.line,d=s.domain,m=s.dimensions,v=t.width,g=s.labelfont,y=s.tickfont,b=s.rangefont,x=a.extendDeep({},h,{color:l.map(p({values:l,range:[h.cmin,h.cmax]})),blockLineCount:i.blockLineCount,canvasOverdrag:i.overdrag*i.canvasPixelRatio}),_=Math.floor(v*(d.x[1]-d.x[0])),w=Math.floor(t.height*(d.y[1]-d.y[0])),M=t.margin||{l:80,r:80,t:100,b:80},k=_,A=w;return{key:r,colCount:m.filter(f).length,dimensions:m,tickDistance:i.tickDistance,unitToColor:function(t){var e=t.map(function(t){return t[0]}),r=t.map(function(t){return 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m[e.label]=(c||0)+1,{key:e.label+(c?"__"+c:""),label:e.label,tickFormat:e.tickformat,tickvals:e.tickvals,ticktext:e.ticktext,ordinal:!!e.tickvals,scatter:i.scatter||e.scatter,xIndex:n,crossfilterDimensionIndex:n,visibleIndex:e._index,height:r,values:e.values,paddedUnitValues:e.values.map(l).map(u),xScale:s,x:s(n),canvasX:s(n)*a,unitScale:function(t,e){return o.scale.linear().range([t-e,e])}(r,i.verticalPadding),domainScale:function(t,e,r){var n=h(r),i=r.ticktext;return r.tickvals?o.scale.ordinal().domain(r.tickvals.map(function(t,e){return function(r,n){if(e){var i=e[n];return null===i||void 0===i?t(r):i}return t(r)}}(o.format(r.tickformat),i))).range(r.tickvals.map(function(t){return(t-n[0])/(n[1]-n[0])}).map(function(r){return t-e+r*(e-(t-e))})):o.scale.linear().domain(n).range([t-e,e])}(r,i.verticalPadding,e),ordinalScale:function(t){var e=h(t);return t.tickvals&&o.scale.ordinal().domain(t.tickvals).range(t.tickvals.map(function(t){return(t-e[0])/(e[1]-e[0])}))}(e),domainToUnitScale:l,filter:e.constraintrange?e.constraintrange.map(l):[0,1],parent:d,model:t}}),d}function g(t){t.classed(i.cn.axisExtentText,!0).attr("text-anchor","middle").style("cursor","default").style("user-select","none")}e.exports=function(t,e,r,f,h,p){var y=!1,b=!0;var x=f.filter(function(t){return u(t).trace.visible}).map(m.bind(0,h)).map(v);r.each(function(t,e){return a.extendFlat(t,x[e])});var _=r.selectAll(".gl-canvas").each(function(t){t.viewModel=x[0],t.model=t.viewModel?t.viewModel.model:null}),w={renderers:[],dimensions:[]},M=null;_.filter(function(t){return t.pick}).style("pointer-events","auto").on("mousemove",function(t){if(b&&t.lineLayer&&p&&p.hover){var e=o.event,r=this.width,n=this.height,i=o.mouse(this),a=i[0],s=i[1];if(a<0||s<0||a>=r||s>=n)return;var l=t.lineLayer.readPixel(a,n-1-s),c=0!==l[3],u=c?l[2]+256*(l[1]+256*l[0]):null,f={x:a,y:s,clientX:e.clientX,clientY:e.clientY,dataIndex:t.model.key,curveNumber:u};u!==M&&(c?p.hover(f):p.unhover&&p.unhover(f),M=u)}}),_.style("opacity",function(t){return t.pick?.01:1}),e.style("background","rgba(255, 255, 255, 0)");var k=e.selectAll("."+i.cn.parcoords).data(x,l);k.exit().remove(),k.enter().append("g").classed(i.cn.parcoords,!0).attr("overflow","visible").style("box-sizing","content-box").style("position","absolute").style("left",0).style("overflow","visible").style("shape-rendering","crispEdges").style("pointer-events","none").call(function(t){var e=t.selectAll("defs").data(c,l);e.enter().append("defs");var r=e.selectAll("#"+i.id.filterBarPattern).data(c,l);r.enter().append("pattern").attr("id",i.id.filterBarPattern).attr("patternUnits","userSpaceOnUse"),r.attr("x",-i.bar.width).attr("width",i.bar.capturewidth).attr("height",function(t){return t.model.height});var n=r.selectAll("rect").data(c,l);n.enter().append("rect").attr("shape-rendering","crispEdges"),n.attr("height",function(t){return t.model.height}).attr("width",i.bar.width).attr("x",i.bar.width/2).attr("fill",i.bar.fillcolor).attr("fill-opacity",i.bar.fillopacity).attr("stroke",i.bar.strokecolor).attr("stroke-opacity",i.bar.strokeopacity).attr("stroke-width",i.bar.strokewidth)}),k.attr("width",function(t){return t.model.width+t.model.pad.l+t.model.pad.r}).attr("height",function(t){return t.model.height+t.model.pad.t+t.model.pad.b}).attr("transform",function(t){return"translate("+t.model.translateX+","+t.model.translateY+")"});var A=k.selectAll("."+i.cn.parcoordsControlView).data(c,l);A.enter().append("g").classed(i.cn.parcoordsControlView,!0).style("box-sizing","content-box"),A.attr("transform",function(t){return"translate("+t.model.pad.l+","+t.model.pad.t+")"});var T=A.selectAll("."+i.cn.yAxis).data(function(t){return t.dimensions},l);function E(t){return t.dimensions.some(function(t){return 0!==t.filter[0]||1!==t.filter[1]})}function S(t,e){return(i.scatter?function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=i,o=0;o<i;o++)for(var s=0;s<i;s++){var l=r[s+o*i]||(r[s+o*i]={}),c=n[s],u=n[s+1];l.dim1=n[o+1],l.dim2=u,l.canvasX=c.canvasX,l.panelSizeX=u.canvasX-c.canvasX,l.panelSizeY=e.model.canvasHeight/a,l.y=o*l.panelSizeY,l.canvasY=e.model.canvasHeight-l.y-l.panelSizeY}}:function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=0;a<1;a++)for(var o=0;o<i;o++){var s=r[o+a*i]||(r[o+a*i]={}),l=n[o],c=n[o+1];s.dim1=l,s.dim2=c,s.canvasX=l.canvasX,s.panelSizeX=c.canvasX-l.canvasX,s.panelSizeY=e.model.canvasHeight/1,s.y=a*s.panelSizeY,s.canvasY=e.model.canvasHeight-s.y-s.panelSizeY}})(t,e)}T.enter().append("g").classed(i.cn.yAxis,!0).each(function(t){w.dimensions.push(t)}),A.each(function(t){S(T,t)}),_.filter(function(t){return!!t.viewModel}).each(function(t){t.lineLayer=n(this,t,i.scatter),t.viewModel[t.key]=t.lineLayer,w.renderers.push(function(){t.lineLayer.render(t.viewModel.panels,!0)}),t.lineLayer.render(t.viewModel.panels,!t.context)}),T.attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),T.call(o.behavior.drag().origin(function(t){return t}).on("drag",function(t){var e=t.parent;b=!1,y||(t.x=Math.max(-i.overdrag,Math.min(t.model.width+i.overdrag,o.event.x)),t.canvasX=t.x*t.model.canvasPixelRatio,T.sort(function(t,e){return t.x-e.x}).each(function(e,r){e.xIndex=r,e.x=t===e?e.x:e.xScale(e.xIndex),e.canvasX=e.x*e.model.canvasPixelRatio}),S(T,e),T.filter(function(e){return 0!==Math.abs(t.xIndex-e.xIndex)}).attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),o.select(this).attr("transform","translate("+t.x+", 0)"),T.each(function(r,n,i){i===t.parent.key&&(e.dimensions[n]=r)}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer.render&&e.focusLayer.render(e.panels))}).on("dragend",function(t){var e=t.parent;y?"ending"===y&&(y=!1):(t.x=t.xScale(t.xIndex),t.canvasX=t.x*t.model.canvasPixelRatio,S(T,e),o.select(this).attr("transform",function(t){return"translate("+t.x+", 0)"}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer&&e.focusLayer.render(e.panels),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,p&&p.axesMoved&&p.axesMoved(e.key,e.dimensions.map(function(t){return t.crossfilterDimensionIndex})))})),T.exit().remove();var L=T.selectAll("."+i.cn.axisOverlays).data(c,l);L.enter().append("g").classed(i.cn.axisOverlays,!0),L.selectAll("."+i.cn.axis).remove();var C=L.selectAll("."+i.cn.axis).data(c,l);C.enter().append("g").classed(i.cn.axis,!0),C.each(function(t){var e=t.model.height/t.model.tickDistance,r=t.domainScale,n=r.domain();o.select(this).call(o.svg.axis().orient("left").tickSize(4).outerTickSize(2).ticks(e,t.tickFormat).tickValues(t.ordinal?n:null).tickFormat(t.ordinal?function(t){return t}:null).scale(r)),s.font(C.selectAll("text"),t.model.tickFont)}),C.selectAll(".domain, .tick>line").attr("fill","none").attr("stroke","black").attr("stroke-opacity",.25).attr("stroke-width","1px"),C.selectAll("text").style("text-shadow","1px 1px 1px #fff, -1px -1px 1px #fff, 1px -1px 1px #fff, -1px 1px 1px #fff").style("cursor","default").style("user-select","none");var P=L.selectAll("."+i.cn.axisHeading).data(c,l);P.enter().append("g").classed(i.cn.axisHeading,!0);var z=P.selectAll("."+i.cn.axisTitle).data(c,l);z.enter().append("text").classed(i.cn.axisTitle,!0).attr("text-anchor","middle").style("cursor","ew-resize").style("user-select","none").style("pointer-events","auto"),z.attr("transform","translate(0,"+-i.axisTitleOffset+")").text(function(t){return t.label}).each(function(t){s.font(z,t.model.labelFont)});var O=L.selectAll("."+i.cn.axisExtent).data(c,l);O.enter().append("g").classed(i.cn.axisExtent,!0);var D=O.selectAll("."+i.cn.axisExtentTop).data(c,l);D.enter().append("g").classed(i.cn.axisExtentTop,!0),D.attr("transform","translate(0,"+-i.axisExtentOffset+")");var I=D.selectAll("."+i.cn.axisExtentTopText).data(c,l);function R(t){return t.ordinal?function(){return""}:o.format(t.tickFormat)}I.enter().append("text").classed(i.cn.axisExtentTopText,!0).call(g),I.text(function(t){return R(t)(t.domainScale.domain().slice(-1)[0])}).each(function(t){s.font(I,t.model.rangeFont)});var N=O.selectAll("."+i.cn.axisExtentBottom).data(c,l);N.enter().append("g").classed(i.cn.axisExtentBottom,!0),N.attr("transform",function(t){return"translate(0,"+(t.model.height+i.axisExtentOffset)+")"});var F=N.selectAll("."+i.cn.axisExtentBottomText).data(c,l);F.enter().append("text").classed(i.cn.axisExtentBottomText,!0).attr("dy","0.75em").call(g),F.text(function(t){return R(t)(t.domainScale.domain()[0])}).each(function(t){s.font(F,t.model.rangeFont)});var j=L.selectAll("."+i.cn.axisBrush).data(c,l),B=j.enter().append("g").classed(i.cn.axisBrush,!0);j.each(function(t){t.brush||(t.brush=o.svg.brush().y(t.unitScale).on("brushstart",q).on("brush",H).on("brushend",G),0===t.filter[0]&&1===t.filter[1]||t.brush.extent(t.filter),o.select(this).call(t.brush))}),B.selectAll("rect").attr("x",-i.bar.capturewidth/2).attr("width",i.bar.capturewidth),B.selectAll("rect.extent").attr("fill","url(#"+i.id.filterBarPattern+")").style("cursor","ns-resize").filter(function(t){return 0===t.filter[0]&&1===t.filter[1]}).attr("y",-100),B.selectAll(".resize rect").attr("height",i.bar.handleheight).attr("opacity",0).style("visibility","visible"),B.selectAll(".resize.n rect").style("cursor","n-resize").attr("y",i.bar.handleoverlap-i.bar.handleheight),B.selectAll(".resize.s rect").style("cursor","s-resize").attr("y",i.bar.handleoverlap);var U=!1,V=!1;function q(){U=!0,y=!0}function H(t){b=!1;var e=t.parent,r=t.brush.extent(),n=e.dimensions,i=n[t.xIndex].filter,a=U&&r[0]===r[1];a&&(t.brush.clear(),o.select(this).select("rect.extent").attr("y",-100));var s=a?[0,1]:r.slice();if(s[0]!==i[0]||s[1]!==i[1]){n[t.xIndex].filter=s,e.focusLayer&&e.focusLayer.render(e.panels,!0);var l=E(e);!V&&l?(e.contextLayer&&e.contextLayer.render(e.panels,!0),V=!0):V&&!l&&(e.contextLayer&&e.contextLayer.render(e.panels,!0,!0),V=!1)}U=!1}function G(t){var e=t.parent,r=t.brush.extent(),n=r[0]===r[1],i=e.dimensions[t.xIndex].filter;if(!n&&t.ordinal&&(i[0]=d(t.ordinalScale,i[0]),i[1]=d(t.ordinalScale,i[1]),i[0]===i[1]&&(i[0]=Math.max(0,i[0]-.05),i[1]=Math.min(1,i[1]+.05)),o.select(this).transition().duration(150).call(t.brush.extent(i)),e.focusLayer.render(e.panels,!0)),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,y="ending",p&&p.filterChanged){var a=t.domainToUnitScale.invert,s=i.map(a);p.filterChanged(e.key,t.visibleIndex,s)}}return w}},{"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1017,"./lines":1020,d3:128}],1022:[function(t,e,r){(function(r){"use strict";var n=t("./parcoords"),i=t("regl");e.exports=function(t,e){var a=t._fullLayout,o=a._toppaper,s=a._paperdiv,l=a._glcontainer;a._glcanvas.each(function(e){e.regl||(e.regl=i({canvas:this,attributes:{antialias:!e.pick,preserveDrawingBuffer:!0},pixelRatio:t._context.plotGlPixelRatio||r.devicePixelRatio}))});var c={},u={},f=a._size;e.forEach(function(e,r){c[r]=t.data[r].dimensions,u[r]=t.data[r].dimensions.slice()});n(s,o,l,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{filterChanged:function(e,r,n){var i=u[e][r],a=i.constraintrange;a&&2===a.length||(a=i.constraintrange=[]),a[0]=n[0],a[1]=n[1],t.emit("plotly_restyle")},hover:function(e){t.emit("plotly_hover",e)},unhover:function(e){t.emit("plotly_unhover",e)},axesMoved:function(e,r){function n(t){return!("visible"in t)||t.visible}function i(t,e,r){var n=e.indexOf(r),i=t.indexOf(n);return-1===i&&(i+=e.length),i}var a=function(t){return function(e,n){return i(r,t,e)-i(r,t,n)}}(u[e].filter(n));c[e].sort(a),u[e].filter(function(t){return!n(t)}).sort(function(t){return u[e].indexOf(t)}).forEach(function(t){c[e].splice(c[e].indexOf(t),1),c[e].splice(u[e].indexOf(t),0,t)}),t.emit("plotly_restyle")}})}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof 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n=t("../../components/color/attributes"),i=t("../../plots/font_attributes"),a=t("../../plots/attributes"),o=t("../../plots/domain_attributes"),s=t("../../lib/extend").extendFlat,l=i({editType:"calc",colorEditType:"style"});e.exports={labels:{valType:"data_array",editType:"calc"},label0:{valType:"number",dflt:0,editType:"calc"},dlabel:{valType:"number",dflt:1,editType:"calc"},values:{valType:"data_array",editType:"calc"},marker:{colors:{valType:"data_array",editType:"calc"},line:{color:{valType:"color",dflt:n.defaultLine,arrayOk:!0,editType:"style"},width:{valType:"number",min:0,dflt:0,arrayOk:!0,editType:"style"},editType:"calc"},editType:"calc"},text:{valType:"data_array",editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},scalegroup:{valType:"string",dflt:"",editType:"calc"},textinfo:{valType:"flaglist",flags:["label","text","value","percent"],extras:["none"],editType:"calc"},hoverinfo:s({},a.hoverinfo,{flags:["label","text","value","percent","name"]}),textposition:{valType:"enumerated",values:["inside","outside","auto","none"],dflt:"auto",arrayOk:!0,editType:"calc"},textfont:s({},l,{}),insidetextfont:s({},l,{}),outsidetextfont:s({},l,{}),domain:o({name:"pie",trace:!0,editType:"calc"}),hole:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},sort:{valType:"boolean",dflt:!0,editType:"calc"},direction:{valType:"enumerated",values:["clockwise","counterclockwise"],dflt:"counterclockwise",editType:"calc"},rotation:{valType:"number",min:-360,max:360,dflt:0,editType:"calc"},pull:{valType:"number",min:0,max:1,dflt:0,arrayOk:!0,editType:"calc"}}},{"../../components/color/attributes":597,"../../lib/extend":713,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1024:[function(t,e,r){"use 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r,n,u,f,h,d=e.values,p=Array.isArray(d)&&d.length,m=e.labels,v=e.marker.colors||[],g=[],y=t._fullLayout,b=y.colorway,x=y._piecolormap,_={},w=0,M=y.hiddenlabels||[];if(y._piecolorway||b===o.defaults||(y._piecolorway=c(b)),e.dlabel)for(m=new Array(d.length),r=0;r<d.length;r++)m[r]=String(e.label0+r*e.dlabel);function k(t,e){return!!t&&(!!(t=a(t)).isValid()&&(t=o.addOpacity(t,t.getAlpha()),x[e]||(x[e]=t),t))}var A=(p?d:m).length;for(r=0;r<A;r++){if(p){if(n=d[r],!i(n))continue;if((n=+n)<0)continue}else n=1;void 0!==(u=m[r])&&""!==u||(u=r);var T=_[u=String(u)];void 0===T?(_[u]=g.length,(f=-1!==M.indexOf(u))||(w+=n),g.push({v:n,label:u,color:k(v[r]),i:r,pts:[r],hidden:f})):((h=g[T]).v+=n,h.pts.push(r),h.hidden||(w+=n),!1===h.color&&v[r]&&(h.color=k(v[r],u)))}for(e.sort&&g.sort(function(t,e){return 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void(e.visible=!1);o("label0"),o("dlabel")}o("marker.line.width")&&o("marker.line.color"),o("marker.colors"),o("scalegroup");var u=o("text"),f=o("textinfo",Array.isArray(u)?"text+percent":"percent");if(o("hovertext"),f&&"none"!==f){var h=o("textposition"),d=Array.isArray(h)||"auto"===h,p=d||"inside"===h,m=d||"outside"===h;if(p||m){var v=s(o,"textfont",a.font);p&&s(o,"insidetextfont",v),m&&s(o,"outsidetextfont",v)}}o("domain.x"),o("domain.y"),o("hole"),o("sort"),o("direction"),o("rotation"),o("pull")}},{"../../lib":724,"./attributes":1023}],1027:[function(t,e,r){"use strict";var n=t("../../components/fx/helpers").appendArrayMultiPointValues;e.exports=function(t,e){var r={curveNumber:e.index,pointNumbers:t.pts,data:e._input,fullData:e,label:t.label,color:t.color,value:t.v,v:t.v};return 1===t.pts.length&&(r.pointNumber=r.i=t.pts[0]),n(r,e,t.pts),r}},{"../../components/fx/helpers":637}],1028:[function(t,e,r){"use strict";var n=t("../../lib");r.formatPiePercent=function(t,e){var r=(100*t).toPrecision(3);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)+"%"},r.formatPieValue=function(t,e){var r=t.toPrecision(10);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)},r.getFirstFilled=function(t,e){if(Array.isArray(t))for(var r=0;r<e.length;r++){var n=t[e[r]];if(n||0===n)return n}},r.castOption=function(t,e){return Array.isArray(t)?r.getFirstFilled(t,e):t||void 0}},{"../../lib":724}],1029:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.supplyLayoutDefaults=t("./layout_defaults"),n.layoutAttributes=t("./layout_attributes"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.styleOne=t("./style_one"),n.moduleType="trace",n.name="pie",n.basePlotModule=t("./base_plot"),n.categories=["pie","showLegend"],n.meta={},e.exports=n},{"./attributes":1023,"./base_plot":1024,"./calc":1025,"./defaults":1026,"./layout_attributes":1030,"./layout_defaults":1031,"./plot":1032,"./style":1033,"./style_one":1034}],1030:[function(t,e,r){"use strict";e.exports={hiddenlabels:{valType:"data_array",editType:"calc"}}},{}],1031:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e){var r,a;r="hiddenlabels",n.coerce(t,e,i,r,a)}},{"../../lib":724,"./layout_attributes":1030}],1032:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/fx"),a=t("../../components/color"),o=t("../../components/drawing"),s=t("../../lib/svg_text_utils"),l=t("./helpers"),c=t("./event_data");function u(t,e){if(t.v===e.vTotal&&!e.trace.hole)return 1;var r=Math.PI*Math.min(t.v/e.vTotal,.5);return Math.min(1/(1+1/Math.sin(r)),(1-e.trace.hole)/2)}function f(t,e){var r=e.pxmid[0],n=e.pxmid[1],i=t.width/2,a=t.height/2;return r<0&&(i*=-1),n<0&&(a*=-1),{scale:1,rCenter:1,rotate:0,x:i+Math.abs(a)*(i>0?1:-1)/2,y:a/(1+r*r/(n*n)),outside:!0}}e.exports=function(t,e){var r=t._fullLayout;!function(t,e){var r,n,i,a,o,s,l,c,u,f=[];for(i=0;i<t.length;i++){if(o=t[i][0],s=o.trace,r=e.w*(s.domain.x[1]-s.domain.x[0]),n=e.h*(s.domain.y[1]-s.domain.y[0]),l=s.pull,Array.isArray(l))for(l=0,a=0;a<s.pull.length;a++)s.pull[a]>l&&(l=s.pull[a]);o.r=Math.min(r,n)/(2+2*l),o.cx=e.l+e.w*(s.domain.x[1]+s.domain.x[0])/2,o.cy=e.t+e.h*(2-s.domain.y[1]-s.domain.y[0])/2,s.scalegroup&&-1===f.indexOf(s.scalegroup)&&f.push(s.scalegroup)}for(a=0;a<f.length;a++){for(u=1/0,c=f[a],i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(u=Math.min(u,o.r*o.r/o.vTotal));for(i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(o.r=Math.sqrt(u*o.vTotal))}}(e,r._size);var h=r._pielayer.selectAll("g.trace").data(e);h.enter().append("g").attr({"stroke-linejoin":"round",class:"trace"}),h.exit().remove(),h.order(),h.each(function(e){var h=n.select(this),d=e[0],p=d.trace;!function(t){var 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o=t._fullLayout,s=t._fullData[p.index];if(!t._dragging&&!1!==o.hovermode){var f=s.hoverinfo;if(Array.isArray(f)&&(f=i.castHoverinfo({hoverinfo:[l.castOption(f,e.pts)],_module:p._module},o,0)),"all"===f&&(f="label+text+value+percent+name"),"none"!==f&&"skip"!==f&&f){var m=u(e,d),v=a+e.pxmid[0]*(1-m),g=h+e.pxmid[1]*(1-m),y=r.separators,_=[];if(-1!==f.indexOf("label")&&_.push(e.label),-1!==f.indexOf("text")){var w=l.castOption(s.hovertext||s.text,e.pts);w&&_.push(w)}-1!==f.indexOf("value")&&_.push(l.formatPieValue(e.v,y)),-1!==f.indexOf("percent")&&_.push(l.formatPiePercent(e.v/d.vTotal,y));var M=p.hoverlabel,k=M.font;i.loneHover({x0:v-m*d.r,x1:v+m*d.r,y:g,text:_.join("<br>"),name:-1!==f.indexOf("name")?s.name:void 0,idealAlign:e.pxmid[0]<0?"left":"right",color:l.castOption(M.bgcolor,e.pts)||e.color,borderColor:l.castOption(M.bordercolor,e.pts),fontFamily:l.castOption(k.family,e.pts),fontSize:l.castOption(k.size,e.pts),fontColor:l.castOption(k.color,e.pts)},{container:o._hoverlayer.node(),outerContainer:o._paper.node(),gd:t}),b=!0}t.emit("plotly_hover",{points:[c(e,s)],event:n.event}),x=!0}}).on("mouseout",function(r){var a=t._fullLayout,o=t._fullData[p.index];x&&(r.originalEvent=n.event,t.emit("plotly_unhover",{points:[c(e,o)],event:n.event}),x=!1),b&&(i.loneUnhover(a._hoverlayer.node()),b=!1)}).on("click",function(){var r=t._fullLayout,a=t._fullData[p.index];t._dragging||!1===r.hovermode||(t._hoverdata=[c(e,a)],i.click(t,n.event))}),p.pull){var _=+l.castOption(p.pull,e.pts)||0;_>0&&(a+=_*e.pxmid[0],h+=_*e.pxmid[1])}e.cxFinal=a,e.cyFinal=h;var w=p.hole;if(e.v===d.vTotal){var M="M"+(a+e.px0[0])+","+(h+e.px0[1])+S(e.px0,e.pxmid,!0,1)+S(e.pxmid,e.px0,!0,1)+"Z";w?y.attr("d","M"+(a+w*e.px0[0])+","+(h+w*e.px0[1])+S(e.px0,e.pxmid,!1,w)+S(e.pxmid,e.px0,!1,w)+"Z"+M):y.attr("d",M)}else{var k=S(e.px0,e.px1,!0,1);if(w){var A=1-w;y.attr("d","M"+(a+w*e.px1[0])+","+(h+w*e.px1[1])+S(e.px1,e.px0,!1,w)+"l"+A*e.px0[0]+","+A*e.px0[1]+k+"Z")}else y.attr("d","M"+a+","+h+"l"+e.px0[0]+","+e.px0[1]+k+"Z")}var T=l.castOption(p.textposition,e.pts),E=g.selectAll("g.slicetext").data(e.text&&"none"!==T?[0]:[]);E.enter().append("g").classed("slicetext",!0),E.exit().remove(),E.each(function(){var r=n.select(this).selectAll("text").data([0]);r.enter().append("text").attr("data-notex",1),r.exit().remove(),r.text(e.text).attr({class:"slicetext",transform:"","text-anchor":"middle"}).call(o.font,"outside"===T?p.outsidetextfont:p.insidetextfont).call(s.convertToTspans,t);var i,l=o.bBox(r.node());"outside"===T?i=f(l,e):(i=function(t,e,r){var n=Math.sqrt(t.width*t.width+t.height*t.height),i=t.width/t.height,a=Math.PI*Math.min(e.v/r.vTotal,.5),o=1-r.trace.hole,s=u(e,r),l={scale:s*r.r*2/n,rCenter:1-s,rotate:0};if(l.scale>=1)return l;var c=i+1/(2*Math.tan(a)),f=r.r*Math.min(1/(Math.sqrt(c*c+.5)+c),o/(Math.sqrt(i*i+o/2)+i)),h={scale:2*f/t.height,rCenter:Math.cos(f/r.r)-f*i/r.r,rotate:(180/Math.PI*e.midangle+720)%180-90},d=1/i,p=d+1/(2*Math.tan(a)),m=r.r*Math.min(1/(Math.sqrt(p*p+.5)+p),o/(Math.sqrt(d*d+o/2)+d)),v={scale:2*m/t.width,rCenter:Math.cos(m/r.r)-m/i/r.r,rotate:(180/Math.PI*e.midangle+810)%180-90},g=v.scale>h.scale?v:h;return l.scale<1&&g.scale>l.scale?g:l}(l,e,d),"auto"===T&&i.scale<1&&(r.call(o.font,p.outsidetextfont),p.outsidetextfont.family===p.insidetextfont.family&&p.outsidetextfont.size===p.insidetextfont.size||(l=o.bBox(r.node())),i=f(l,e)));var c=a+e.pxmid[0]*i.rCenter+(i.x||0),m=h+e.pxmid[1]*i.rCenter+(i.y||0);i.outside&&(e.yLabelMin=m-l.height/2,e.yLabelMid=m,e.yLabelMax=m+l.height/2,e.labelExtraX=0,e.labelExtraY=0,v=!0),r.attr("transform","translate("+c+","+m+")"+(i.scale<1?"scale("+i.scale+")":"")+(i.rotate?"rotate("+i.rotate+")":"")+"translate("+-(l.left+l.right)/2+","+-(l.top+l.bottom)/2+")")})}function S(t,r,n,i){return"a"+i*d.r+","+i*d.r+" 0 "+e.largeArc+(n?" 1 ":" 0 ")+i*(r[0]-t[0])+","+i*(r[1]-t[1])}}),v&&function(t,e){var r,n,i,a,o,s,c,u,f,h,d,p,m;function v(t,e){return t.pxmid[1]-e.pxmid[1]}function g(t,e){return e.pxmid[1]-t.pxmid[1]}function y(t,r){r||(r={});var i,u,f,d,p,m,v=r.labelExtraY+(n?r.yLabelMax:r.yLabelMin),g=n?t.yLabelMin:t.yLabelMax,y=n?t.yLabelMax:t.yLabelMin,b=t.cyFinal+o(t.px0[1],t.px1[1]),x=v-g;if(x*c>0&&(t.labelExtraY=x),Array.isArray(e.pull))for(u=0;u<h.length;u++)(f=h[u])===t||(l.castOption(e.pull,t.pts)||0)>=(l.castOption(e.pull,f.pts)||0)||((t.pxmid[1]-f.pxmid[1])*c>0?(d=f.cyFinal+o(f.px0[1],f.px1[1]),(x=d-g-t.labelExtraY)*c>0&&(t.labelExtraY+=x)):(y+t.labelExtraY-b)*c>0&&(i=3*s*Math.abs(u-h.indexOf(t)),p=f.cxFinal+a(f.px0[0],f.px1[0]),(m=p+i-(t.cxFinal+t.pxmid[0])-t.labelExtraX)*s>0&&(t.labelExtraX+=m)))}for(n=0;n<2;n++)for(i=n?v:g,o=n?Math.max:Math.min,c=n?1:-1,r=0;r<2;r++){for(a=r?Math.max:Math.min,s=r?1:-1,(u=t[n][r]).sort(i),f=t[1-n][r],h=f.concat(u),p=[],d=0;d<u.length;d++)void 0!==u[d].yLabelMid&&p.push(u[d]);for(m=!1,d=0;n&&d<f.length;d++)if(void 0!==f[d].yLabelMid){m=f[d];break}for(d=0;d<p.length;d++){var b=d&&p[d-1];m&&!d&&(b=m),y(p[d],b)}}}(m,p),h.each(function(t){if(t.labelExtraX||t.labelExtraY){var e=n.select(this),r=e.select("g.slicetext text");r.attr("transform","translate("+t.labelExtraX+","+t.labelExtraY+")"+r.attr("transform"));var i=t.cxFinal+t.pxmid[0],o="M"+i+","+(t.cyFinal+t.pxmid[1]),s=(t.yLabelMax-t.yLabelMin)*(t.pxmid[0]<0?-1:1)/4;if(t.labelExtraX){var l=t.labelExtraX*t.pxmid[1]/t.pxmid[0],c=t.yLabelMid+t.labelExtraY-(t.cyFinal+t.pxmid[1]);Math.abs(l)>Math.abs(c)?o+="l"+c*t.pxmid[0]/t.pxmid[1]+","+c+"H"+(i+t.labelExtraX+s):o+="l"+t.labelExtraX+","+l+"v"+(c-l)+"h"+s}else o+="V"+(t.yLabelMid+t.labelExtraY)+"h"+s;e.append("path").classed("textline",!0).call(a.stroke,p.outsidetextfont.color).attr({"stroke-width":Math.min(2,p.outsidetextfont.size/8),d:o,fill:"none"})}})})}),setTimeout(function(){h.selectAll("tspan").each(function(){var t=n.select(this);t.attr("dy")&&t.attr("dy",t.attr("dy"))})},0)}},{"../../components/color":598,"../../components/drawing":623,"../../components/fx":640,"../../lib/svg_text_utils":747,"./event_data":1027,"./helpers":1028,d3:128}],1033:[function(t,e,r){"use strict";var n=t("d3"),i=t("./style_one");e.exports=function(t){t._fullLayout._pielayer.selectAll(".trace").each(function(t){var e=t[0].trace,r=n.select(this);r.style({opacity:e.opacity}),r.selectAll("path.surface").each(function(t){n.select(this).call(i,t,e)})})}},{"./style_one":1034,d3:128}],1034:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./helpers").castOption;e.exports=function(t,e,r){var a=r.marker.line,o=i(a.color,e.pts)||n.defaultLine,s=i(a.width,e.pts)||0;t.style({"stroke-width":s}).call(n.fill,e.color).call(n.stroke,o)}},{"../../components/color":598,"./helpers":1028}],1035:[function(t,e,r){"use strict";var n=t("../scatter/attributes");e.exports={x:n.x,y:n.y,xy:{valType:"data_array",editType:"calc"},indices:{valType:"data_array",editType:"calc"},xbounds:{valType:"data_array",editType:"calc"},ybounds:{valType:"data_array",editType:"calc"},text:n.text,marker:{color:{valType:"color",arrayOk:!1,editType:"calc"},opacity:{valType:"number",min:0,max:1,dflt:1,arrayOk:!1,editType:"calc"},blend:{valType:"boolean",dflt:null,editType:"calc"},sizemin:{valType:"number",min:.1,max:2,dflt:.5,editType:"calc"},sizemax:{valType:"number",min:.1,dflt:20,editType:"calc"},border:{color:{valType:"color",arrayOk:!1,editType:"calc"},arearatio:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},editType:"calc"},editType:"calc"}}},{"../scatter/attributes":1048}],1036:[function(t,e,r){"use strict";var n=t("gl-pointcloud2d"),i=t("../../lib/str2rgbarray"),a=t("../scatter/get_trace_color"),o=["xaxis","yaxis"];function s(t,e){this.scene=t,this.uid=e,this.type="pointcloud",this.pickXData=[],this.pickYData=[],this.xData=[],this.yData=[],this.textLabels=[],this.color="rgb(0, 0, 0)",this.name="",this.hoverinfo="all",this.idToIndex=new Int32Array(0),this.bounds=[0,0,0,0],this.pointcloudOptions={positions:new Float32Array(0),idToIndex:this.idToIndex,sizemin:.5,sizemax:12,color:[0,0,0,1],areaRatio:1,borderColor:[0,0,0,1]},this.pointcloud=n(t.glplot,this.pointcloudOptions),this.pointcloud._trace=this}var l=s.prototype;l.handlePick=function(t){var e=this.idToIndex[t.pointId];return{trace:this,dataCoord:t.dataCoord,traceCoord:this.pickXYData?[this.pickXYData[2*e],this.pickXYData[2*e+1]]:[this.pickXData[e],this.pickYData[e]],textLabel:Array.isArray(this.textLabels)?this.textLabels[e]:this.textLabels,color:this.color,name:this.name,pointIndex:e,hoverinfo:this.hoverinfo}},l.update=function(t){this.index=t.index,this.textLabels=t.text,this.name=t.name,this.hoverinfo=t.hoverinfo,this.bounds=[1/0,1/0,-1/0,-1/0],this.updateFast(t),this.color=a(t,{})},l.updateFast=function(t){var e,r,n,a,o,s,l=this.xData=this.pickXData=t.x,c=this.yData=this.pickYData=t.y,u=this.pickXYData=t.xy,f=t.xbounds&&t.ybounds,h=t.indices,d=this.bounds;if(u){if(n=u,e=u.length>>>1,f)d[0]=t.xbounds[0],d[2]=t.xbounds[1],d[1]=t.ybounds[0],d[3]=t.ybounds[1];else for(s=0;s<e;s++)a=n[2*s],o=n[2*s+1],a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);if(h)r=h;else for(r=new Int32Array(e),s=0;s<e;s++)r[s]=s}else for(e=l.length,n=new Float32Array(2*e),r=new Int32Array(e),s=0;s<e;s++)a=l[s],o=c[s],r[s]=s,n[2*s]=a,n[2*s+1]=o,a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);this.idToIndex=r,this.pointcloudOptions.idToIndex=r,this.pointcloudOptions.positions=n;var p=i(t.marker.color),m=i(t.marker.border.color),v=t.opacity*t.marker.opacity;p[3]*=v,this.pointcloudOptions.color=p;var g=t.marker.blend;if(null===g){g=l.length<100||c.length<100}this.pointcloudOptions.blend=g,m[3]*=v,this.pointcloudOptions.borderColor=m;var y=t.marker.sizemin,b=Math.max(t.marker.sizemax,t.marker.sizemin);this.pointcloudOptions.sizeMin=y,this.pointcloudOptions.sizeMax=b,this.pointcloudOptions.areaRatio=t.marker.border.arearatio,this.pointcloud.update(this.pointcloudOptions),this.expandAxesFast(d,b/2)},l.expandAxesFast=function(t,e){for(var r,n,i,a=e||.5,s=0;s<2;s++)(n=(r=this.scene[o[s]])._min)||(n=[]),n.push({val:t[s],pad:a}),(i=r._max)||(i=[]),i.push({val:t[s+2],pad:a})},l.dispose=function(){this.pointcloud.dispose()},e.exports=function(t,e){var r=new s(t,e.uid);return r.update(e),r}},{"../../lib/str2rgbarray":746,"../scatter/get_trace_color":1058,"gl-pointcloud2d":212}],1037:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}a("x"),a("y"),a("xbounds"),a("ybounds"),t.xy&&t.xy instanceof Float32Array&&(e.xy=t.xy),t.indices&&t.indices instanceof Int32Array&&(e.indices=t.indices),a("text"),a("marker.color",r),a("marker.opacity"),a("marker.blend"),a("marker.sizemin"),a("marker.sizemax"),a("marker.border.color",r),a("marker.border.arearatio")}},{"../../lib":724,"./attributes":1035}],1038:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("../scatter3d/calc"),n.plot=t("./convert"),n.moduleType="trace",n.name="pointcloud",n.basePlotModule=t("../../plots/gl2d"),n.categories=["gl","gl2d","showLegend"],n.meta={},e.exports=n},{"../../plots/gl2d":810,"../scatter3d/calc":1074,"./attributes":1035,"./convert":1036,"./defaults":1037}],1039:[function(t,e,r){"use strict";var n=t("../../plots/font_attributes"),i=t("../../plots/attributes"),a=t("../../components/color/attributes"),o=t("../../components/fx/attributes"),s=t("../../plots/domain_attributes"),l=t("../../lib/extend").extendFlat,c=t("../../plot_api/edit_types").overrideAll;e.exports=c({hoverinfo:l({},i.hoverinfo,{flags:["label","text","value","percent","name"]}),hoverlabel:o.hoverlabel,domain:s({name:"sankey",trace:!0}),orientation:{valType:"enumerated",values:["v","h"],dflt:"h"},valueformat:{valType:"string",dflt:".3s"},valuesuffix:{valType:"string",dflt:""},arrangement:{valType:"enumerated",values:["snap","perpendicular","freeform","fixed"],dflt:"snap"},textfont:n({}),node:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:.5,arrayOk:!0}},pad:{valType:"number",arrayOk:!1,min:0,dflt:20},thickness:{valType:"number",arrayOk:!1,min:1,dflt:20}},link:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:0,arrayOk:!0}},source:{valType:"data_array",dflt:[]},target:{valType:"data_array",dflt:[]},value:{valType:"data_array",dflt:[]}}},"calc","nested")},{"../../components/color/attributes":597,"../../components/fx/attributes":632,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1040:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("../../plots/get_data").getModuleCalcData,a=t("./plot"),o=t("../../components/fx/layout_attributes");r.name="sankey",r.baseLayoutAttrOverrides=n({hoverlabel:o.hoverlabel},"plot","nested"),r.plot=function(t){var e=i(t.calcdata,"sankey");a(t,e)},r.clean=function(t,e,r,n){var i=n._has&&n._has("sankey"),a=e._has&&e._has("sankey");i&&!a&&n._paperdiv.selectAll(".sankey").remove()}},{"../../components/fx/layout_attributes":641,"../../plot_api/edit_types":754,"../../plots/get_data":807,"./plot":1045}],1041:[function(t,e,r){"use strict";var n=t("strongly-connected-components"),i=t("../../lib"),a=t("../../lib/gup").wrap;e.exports=function(t,e){return function(t,e,r){for(var i=t.map(function(){return[]}),a=0;a<Math.min(e.length,r.length);a++){if(e[a]===r[a])return!0;i[e[a]].push(r[a])}return n(i).components.some(function(t){return t.length>1})}(e.node.label,e.link.source,e.link.target)&&(i.error("Circularity is present in the Sankey data. Removing all nodes and links."),e.link.label=[],e.link.source=[],e.link.target=[],e.link.value=[],e.link.color=[],e.node.label=[],e.node.color=[]),a({link:e.link,node:e.node})}},{"../../lib":724,"../../lib/gup":721,"strongly-connected-components":517}],1042:[function(t,e,r){"use strict";e.exports={nodeTextOffsetHorizontal:4,nodeTextOffsetVertical:3,nodePadAcross:10,sankeyIterations:50,forceIterations:5,forceTicksPerFrame:10,duration:500,ease:"cubic-in-out",cn:{sankey:"sankey",sankeyLinks:"sankey-links",sankeyLink:"sankey-link",sankeyNodeSet:"sankey-node-set",sankeyNode:"sankey-node",nodeRect:"node-rect",nodeCapture:"node-capture",nodeCentered:"node-entered",nodeLabelGuide:"node-label-guide",nodeLabel:"node-label",nodeLabelTextPath:"node-label-text-path"}}},{}],1043:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("../../components/color"),o=t("tinycolor2");e.exports=function(t,e,r,s){function l(r,a){return n.coerce(t,e,i,r,a)}l("node.label"),l("node.pad"),l("node.thickness"),l("node.line.color"),l("node.line.width");var c=s.colorway;l("node.color",e.node.label.map(function(t,e){return a.addOpacity(function(t){return c[t%c.length]}(e),.8)})),l("link.label"),l("link.source"),l("link.target"),l("link.value"),l("link.line.color"),l("link.line.width"),l("link.color",e.link.value.map(function(){return o(s.paper_bgcolor).getLuminance()<.333?"rgba(255, 255, 255, 0.6)":"rgba(0, 0, 0, 0.2)"})),l("domain.x"),l("domain.y"),l("orientation"),l("valueformat"),l("valuesuffix"),l("arrangement"),n.coerceFont(l,"textfont",n.extendFlat({},s.font));e.node.label.some(function(t,r){return-1===e.link.source.indexOf(r)&&-1===e.link.target.indexOf(r)})&&n.warn("Some of the nodes are neither sources nor targets, they will not be displayed.")}},{"../../components/color":598,"../../lib":724,"./attributes":1039,tinycolor2:526}],1044:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("./calc"),n.plot=t("./plot"),n.moduleType="trace",n.name="sankey",n.basePlotModule=t("./base_plot"),n.categories=["noOpacity"],n.meta={},e.exports=n},{"./attributes":1039,"./base_plot":1040,"./calc":1041,"./defaults":1043,"./plot":1045}],1045:[function(t,e,r){"use strict";var n=t("d3"),i=t("./render"),a=t("../../components/fx"),o=t("../../components/color"),s=t("../../lib"),l=t("./constants").cn,c=s._;function u(t){return""!==t}function f(t,e){return t.filter(function(t){return t.key===e.traceId})}function h(t,e){n.select(t).select("path").style("fill-opacity",e),n.select(t).select("rect").style("fill-opacity",e)}function d(t){n.select(t).select("text.name").style("fill","black")}function p(t){return function(e){return-1!==t.node.sourceLinks.indexOf(e.link)||-1!==t.node.targetLinks.indexOf(e.link)}}function m(t){return function(e){return-1!==e.node.sourceLinks.indexOf(t.link)||-1!==e.node.targetLinks.indexOf(t.link)}}function v(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(y.bind(0,e,r,!1))}function g(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(b.bind(0,e,r,!1))}function y(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",.4),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",.4),r&&f(e,t).selectAll("."+l.sankeyNode).filter(m(t)).call(v)}function b(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",function(t){return t.tinyColorAlpha}),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",function(t){return t.tinyColorAlpha}),r&&f(e,t).selectAll(l.sankeyNode).filter(m(t)).call(g)}function x(t,e){var r=t.hoverlabel||{},n=s.nestedProperty(r,e).get();return!Array.isArray(n)&&n}e.exports=function(t,e){var r=t._fullLayout,s=r._paper,f=r._size,p=c(t,"source:")+" ",m=c(t,"target:")+" ",_=c(t,"incoming flow count:")+" ",w=c(t,"outgoing flow count:")+" ";i(s,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{linkEvents:{hover:function(e,r,i){n.select(e).call(y.bind(0,r,i,!0)),t.emit("plotly_hover",{event:n.event,points:[r.link]})},follow:function(e,i){var s=i.link.trace,l=t._fullLayout._paperdiv.node().getBoundingClientRect(),c=e.getBoundingClientRect(),f=c.left+c.width/2,v=c.top+c.height/2,g=a.loneHover({x:f-l.left,y:v-l.top,name:n.format(i.valueFormat)(i.link.value)+i.valueSuffix,text:[i.link.label||"",p+i.link.source.label,m+i.link.target.label].filter(u).join("<br>"),color:x(s,"bgcolor")||o.addOpacity(i.tinyColorHue,1),borderColor:x(s,"bordercolor"),fontFamily:x(s,"font.family"),fontSize:x(s,"font.size"),fontColor:x(s,"font.color"),idealAlign:n.event.x<f?"right":"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.65),d(g)},unhover:function(e,i,o){n.select(e).call(b.bind(0,i,o,!0)),t.emit("plotly_unhover",{event:n.event,points:[i.link]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r){var i=r.link;i.originalEvent=n.event,t._hoverdata=[i],a.click(t,{target:!0})}},nodeEvents:{hover:function(e,r,i){n.select(e).call(v,r,i),t.emit("plotly_hover",{event:n.event,points:[r.node]})},follow:function(e,i){var o=i.node.trace,s=n.select(e).select("."+l.nodeRect),c=t._fullLayout._paperdiv.node().getBoundingClientRect(),f=s.node().getBoundingClientRect(),p=f.left-2-c.left,m=f.right+2-c.left,v=f.top+f.height/4-c.top,g=a.loneHover({x0:p,x1:m,y:v,name:n.format(i.valueFormat)(i.node.value)+i.valueSuffix,text:[i.node.label,_+i.node.targetLinks.length,w+i.node.sourceLinks.length].filter(u).join("<br>"),color:x(o,"bgcolor")||i.tinyColorHue,borderColor:x(o,"bordercolor"),fontFamily:x(o,"font.family"),fontSize:x(o,"font.size"),fontColor:x(o,"font.color"),idealAlign:"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.85),d(g)},unhover:function(e,i,o){n.select(e).call(g,i,o),t.emit("plotly_unhover",{event:n.event,points:[i.node]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r,i){var o=r.node;o.originalEvent=n.event,t._hoverdata=[o],n.select(e).call(g,r,i),a.click(t,{target:!0})}}})}},{"../../components/color":598,"../../components/fx":640,"../../lib":724,"./constants":1042,"./render":1046,d3:128}],1046:[function(t,e,r){"use strict";var n=t("./constants"),i=t("d3"),a=t("tinycolor2"),o=t("../../components/color"),s=t("../../components/drawing"),l=t("@plotly/d3-sankey").sankey,c=t("d3-force"),u=t("../../lib"),f=t("../../lib/gup").keyFun,h=t("../../lib/gup").repeat,d=t("../../lib/gup").unwrap;function p(t){t.lastDraggedX=t.x,t.lastDraggedY=t.y}function m(t){return function(e){return e.node.originalX===t.node.originalX}}function v(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y+t[e].dy/2}function g(t){t.attr("transform",function(t){return"translate("+t.node.x.toFixed(3)+", "+(t.node.y-t.node.dy/2).toFixed(3)+")"})}function y(t){var e=t.sankey.nodes();!function(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y-t[e].dy/2}(e);var r=t.sankey.link()(t.link);return v(e),r}function b(t){t.call(g)}function x(t,e){t.call(b),e.attr("d",y)}function _(t){t.attr("width",function(t){return t.visibleWidth}).attr("height",function(t){return t.visibleHeight})}function w(t){return t.link.dy>1||t.linkLineWidth>0}function M(t){return"translate("+t.translateX+","+t.translateY+")"+(t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)")}function k(t){return"translate("+(t.horizontal?0:t.labelY)+" "+(t.horizontal?t.labelY:0)+")"}function A(t){return i.svg.line()([[t.horizontal?t.left?-t.sizeAcross:t.visibleWidth+n.nodeTextOffsetHorizontal:n.nodeTextOffsetHorizontal,0],[t.horizontal?t.left?-n.nodeTextOffsetHorizontal:t.sizeAcross:t.visibleHeight-n.nodeTextOffsetHorizontal,0]])}function T(t){return t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)"}function E(t){return t.horizontal?"scale(1 1)":"scale(-1 1)"}function S(t){return t.darkBackground&&!t.horizontal?"rgb(255,255,255)":"rgb(0,0,0)"}function L(t){return t.horizontal&&t.left?"100%":"0%"}function C(t,e,r){t.on(".basic",null).on("mouseover.basic",function(t){t.interactionState.dragInProgress||(r.hover(this,t,e),t.interactionState.hovered=[this,t])}).on("mousemove.basic",function(t){t.interactionState.dragInProgress||(r.follow(this,t),t.interactionState.hovered=[this,t])}).on("mouseout.basic",function(t){t.interactionState.dragInProgress||(r.unhover(this,t,e),t.interactionState.hovered=!1)}).on("click.basic",function(t){t.interactionState.hovered&&(r.unhover(this,t,e),t.interactionState.hovered=!1),t.interactionState.dragInProgress||r.select(this,t,e)})}function P(t,e,r){var a=i.behavior.drag().origin(function(t){return t.node}).on("dragstart",function(i){if("fixed"!==i.arrangement&&(u.raiseToTop(this),i.interactionState.dragInProgress=i.node,p(i.node),i.interactionState.hovered&&(r.nodeEvents.unhover.apply(0,i.interactionState.hovered),i.interactionState.hovered=!1),"snap"===i.arrangement)){var a=i.traceId+"|"+Math.floor(i.node.originalX);i.forceLayouts[a]?i.forceLayouts[a].alpha(1):function(t,e,r){var i=r.sankey.nodes().filter(function(t){return t.originalX===r.node.originalX});r.forceLayouts[e]=c.forceSimulation(i).alphaDecay(0).force("collide",c.forceCollide().radius(function(t){return t.dy/2+r.nodePad/2}).strength(1).iterations(n.forceIterations)).force("constrain",function(t,e,r,i){return function(){for(var t=0,a=0;a<r.length;a++){var o=r[a];o===i.interactionState.dragInProgress?(o.x=o.lastDraggedX,o.y=o.lastDraggedY):(o.vx=(o.originalX-o.x)/n.forceTicksPerFrame,o.y=Math.min(i.size-o.dy/2,Math.max(o.dy/2,o.y))),t=Math.max(t,Math.abs(o.vx),Math.abs(o.vy))}!i.interactionState.dragInProgress&&t<.1&&i.forceLayouts[e].alpha()>0&&i.forceLayouts[e].alpha(0)}}(0,e,i,r)).stop()}(0,a,i),function(t,e,r,i){window.requestAnimationFrame(function a(){for(var o=0;o<n.forceTicksPerFrame;o++)r.forceLayouts[i].tick();r.sankey.relayout(),x(t.filter(m(r)),e),r.forceLayouts[i].alpha()>0&&window.requestAnimationFrame(a)})}(t,e,i,a)}}).on("drag",function(r){if("fixed"!==r.arrangement){var n=i.event.x,a=i.event.y;"snap"===r.arrangement?(r.node.x=n,r.node.y=a):("freeform"===r.arrangement&&(r.node.x=n),r.node.y=Math.max(r.node.dy/2,Math.min(r.size-r.node.dy/2,a))),p(r.node),"snap"!==r.arrangement&&(r.sankey.relayout(),x(t.filter(m(r)),e))}}).on("dragend",function(t){t.interactionState.dragInProgress=!1});t.on(".drag",null).call(a)}e.exports=function(t,e,r,i){var c=t.selectAll("."+n.cn.sankey).data(e.filter(function(t){return d(t).trace.visible}).map(function(t,e,r){for(var i,a=d(e).trace,o=a.domain,s=a.node,c=a.link,f=a.arrangement,h="h"===a.orientation,p=a.node.pad,m=a.node.thickness,g=a.node.line.color,y=a.node.line.width,b=a.link.line.color,x=a.link.line.width,_=a.valueformat,w=a.valuesuffix,M=a.textfont,k=t.width*(o.x[1]-o.x[0]),A=t.height*(o.y[1]-o.y[0]),T=s.label.map(function(t,e){return{pointNumber:e,label:t,color:u.isArray(s.color)?s.color[e]:s.color}}),E=c.value.map(function(t,e){return{pointNumber:e,label:c.label[e],color:u.isArray(c.color)?c.color[e]:c.color,source:c.source[e],target:c.target[e],value:t}}),S=l().size(h?[k,A]:[A,k]).nodeWidth(m).nodePadding(p).nodes(T).links(E).layout(n.sankeyIterations),L=S.nodes(),C=0;C<L.length;C++)(i=L[C]).width=k,i.height=A;return v(T),{key:r,trace:a,guid:Math.floor(1e12*(1+Math.random())),horizontal:h,width:k,height:A,nodePad:p,nodeLineColor:g,nodeLineWidth:y,linkLineColor:b,linkLineWidth:x,valueFormat:_,valueSuffix:w,textFont:M,translateX:o.x[0]*k+t.margin.l,translateY:t.height-o.y[1]*t.height+t.margin.t,dragParallel:h?A:k,dragPerpendicular:h?k:A,nodes:T,links:E,arrangement:f,sankey:S,forceLayouts:{},interactionState:{dragInProgress:!1,hovered:!1}}}.bind(null,r)),f);c.exit().remove(),c.enter().append("g").classed(n.cn.sankey,!0).style("box-sizing","content-box").style("position","absolute").style("left",0).style("shape-rendering","geometricPrecision").style("pointer-events","auto").style("box-sizing","content-box").attr("transform",M),c.transition().ease(n.ease).duration(n.duration).attr("transform",M);var p=c.selectAll("."+n.cn.sankeyLinks).data(h,f);p.enter().append("g").classed(n.cn.sankeyLinks,!0).style("fill","none");var m=p.selectAll("."+n.cn.sankeyLink).data(function(t){return t.sankey.links().filter(function(t){return t.value}).map(function(t,e,r){var n=a(r.color),i=r.source.label+"|"+r.target.label,s=t[i];t[i]=(s||0)+1;var l=i+"__"+t[i];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:l,traceId:e.key,link:r,tinyColorHue:o.tinyRGB(n),tinyColorAlpha:n.getAlpha(),linkLineColor:e.linkLineColor,linkLineWidth:e.linkLineWidth,valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,interactionState:e.interactionState}}.bind(null,{},t))},f);m.enter().append("path").classed(n.cn.sankeyLink,!0).attr("d",y).call(C,c,i.linkEvents),m.style("stroke",function(t){return w(t)?o.tinyRGB(a(t.linkLineColor)):t.tinyColorHue}).style("stroke-opacity",function(t){return w(t)?o.opacity(t.linkLineColor):t.tinyColorAlpha}).style("stroke-width",function(t){return w(t)?t.linkLineWidth:1}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),m.transition().ease(n.ease).duration(n.duration).attr("d",y),m.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var b=c.selectAll("."+n.cn.sankeyNodeSet).data(h,f);b.enter().append("g").classed(n.cn.sankeyNodeSet,!0),b.style("cursor",function(t){switch(t.arrangement){case"fixed":return"default";case"perpendicular":return"ns-resize";default:return"move"}});var x=b.selectAll("."+n.cn.sankeyNode).data(function(t){var e=t.sankey.nodes();return function(t){var e,r=[];for(e=0;e<t.length;e++)t[e].originalX=t[e].x,t[e].originalY=t[e].y,-1===r.indexOf(t[e].x)&&r.push(t[e].x);for(r.sort(function(t,e){return t-e}),e=0;e<t.length;e++)t[e].originalLayerIndex=r.indexOf(t[e].originalX),t[e].originalLayer=t[e].originalLayerIndex/(r.length-1)}(e),e.filter(function(t){return t.value}).map(function(t,e,r){var i=a(r.color),s=n.nodePadAcross,l=e.nodePad/2,c=r.dx,u=Math.max(.5,r.dy),f=r.label,h=t[f];t[f]=(h||0)+1;var d=f+"__"+t[f];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:d,traceId:e.key,node:r,nodePad:e.nodePad,nodeLineColor:e.nodeLineColor,nodeLineWidth:e.nodeLineWidth,textFont:e.textFont,size:e.horizontal?e.height:e.width,visibleWidth:Math.ceil(c),visibleHeight:u,zoneX:-s,zoneY:-l,zoneWidth:c+2*s,zoneHeight:u+2*l,labelY:e.horizontal?r.dy/2+1:r.dx/2+1,left:1===r.originalLayer,sizeAcross:e.width,forceLayouts:e.forceLayouts,horizontal:e.horizontal,darkBackground:i.getBrightness()<=128,tinyColorHue:o.tinyRGB(i),tinyColorAlpha:i.getAlpha(),valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,arrangement:e.arrangement,uniqueNodeLabelPathId:[e.guid,e.key,d].join(" "),interactionState:e.interactionState}}.bind(null,{},t))},f);x.enter().append("g").classed(n.cn.sankeyNode,!0).call(g).call(C,c,i.nodeEvents),x.call(P,m,i),x.transition().ease(n.ease).duration(n.duration).call(g),x.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var z=x.selectAll("."+n.cn.nodeRect).data(h);z.enter().append("rect").classed(n.cn.nodeRect,!0).call(_),z.style("stroke-width",function(t){return t.nodeLineWidth}).style("stroke",function(t){return o.tinyRGB(a(t.nodeLineColor))}).style("stroke-opacity",function(t){return o.opacity(t.nodeLineColor)}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),z.transition().ease(n.ease).duration(n.duration).call(_);var O=x.selectAll("."+n.cn.nodeCapture).data(h);O.enter().append("rect").classed(n.cn.nodeCapture,!0).style("fill-opacity",0),O.attr("x",function(t){return t.zoneX}).attr("y",function(t){return t.zoneY}).attr("width",function(t){return t.zoneWidth}).attr("height",function(t){return t.zoneHeight});var D=x.selectAll("."+n.cn.nodeCentered).data(h);D.enter().append("g").classed(n.cn.nodeCentered,!0).attr("transform",k),D.transition().ease(n.ease).duration(n.duration).attr("transform",k);var I=D.selectAll("."+n.cn.nodeLabelGuide).data(h);I.enter().append("path").classed(n.cn.nodeLabelGuide,!0).attr("id",function(t){return t.uniqueNodeLabelPathId}).attr("d",A).attr("transform",T),I.transition().ease(n.ease).duration(n.duration).attr("d",A).attr("transform",T);var R=D.selectAll("."+n.cn.nodeLabel).data(h);R.enter().append("text").classed(n.cn.nodeLabel,!0).attr("transform",E).style("user-select","none").style("cursor","default").style("fill","black"),R.style("text-shadow",function(t){return t.horizontal?"-1px 1px 1px #fff, 1px 1px 1px #fff, 1px -1px 1px #fff, -1px -1px 1px #fff":"none"}).each(function(t){s.font(R,t.textFont)}),R.transition().ease(n.ease).duration(n.duration).attr("transform",E);var N=R.selectAll("."+n.cn.nodeLabelTextPath).data(h);N.enter().append("textPath").classed(n.cn.nodeLabelTextPath,!0).attr("alignment-baseline","middle").attr("xlink:href",function(t){return"#"+t.uniqueNodeLabelPathId}).attr("startOffset",L).style("fill",S),N.text(function(t){return t.horizontal||t.node.dy>5?t.node.label:""}).attr("text-anchor",function(t){return t.horizontal&&t.left?"end":"start"}),N.transition().ease(n.ease).duration(n.duration).attr("startOffset",L).style("fill",S)}},{"../../components/color":598,"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1042,"@plotly/d3-sankey":41,d3:128,"d3-force":124,tinycolor2:526}],1047:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){for(var r=0;r<t.length;r++)t[r].i=r;n.mergeArray(e.text,t,"tx"),n.mergeArray(e.hovertext,t,"htx"),n.mergeArray(e.customdata,t,"data"),n.mergeArray(e.textposition,t,"tp"),e.textfont&&(n.mergeArray(e.textfont.size,t,"ts"),n.mergeArray(e.textfont.color,t,"tc"),n.mergeArray(e.textfont.family,t,"tf"));var i=e.marker;if(i){n.mergeArray(i.size,t,"ms"),n.mergeArray(i.opacity,t,"mo"),n.mergeArray(i.symbol,t,"mx"),n.mergeArray(i.color,t,"mc");var a=i.line;i.line&&(n.mergeArray(a.color,t,"mlc"),n.mergeArray(a.width,t,"mlw"));var o=i.gradient;o&&"none"!==o.type&&(n.mergeArray(o.type,t,"mgt"),n.mergeArray(o.color,t,"mgc"))}}},{"../../lib":724}],1048:[function(t,e,r){"use strict";var n=t("../../components/colorscale/color_attributes"),i=t("../../components/errorbars/attributes"),a=t("../../components/colorbar/attributes"),o=t("../../plots/font_attributes"),s=t("../../components/drawing/attributes").dash,l=t("../../components/drawing"),c=(t("./constants"),t("../../lib/extend").extendFlat);e.exports={x:{valType:"data_array",editType:"calc+clearAxisTypes"},x0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dx:{valType:"number",dflt:1,editType:"calc"},y:{valType:"data_array",editType:"calc+clearAxisTypes"},y0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dy:{valType:"number",dflt:1,editType:"calc"},text:{valType:"string",dflt:"",arrayOk:!0,editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},mode:{valType:"flaglist",flags:["lines","markers","text"],extras:["none"],editType:"calc"},hoveron:{valType:"flaglist",flags:["points","fills"],editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},shape:{valType:"enumerated",values:["linear","spline","hv","vh","hvh","vhv"],dflt:"linear",editType:"plot"},smoothing:{valType:"number",min:0,max:1.3,dflt:1,editType:"plot"},dash:c({},s,{editType:"style"}),simplify:{valType:"boolean",dflt:!0,editType:"plot"},editType:"plot"},connectgaps:{valType:"boolean",dflt:!1,editType:"calc"},cliponaxis:{valType:"boolean",dflt:!0,editType:"plot"},fill:{valType:"enumerated",values:["none","tozeroy","tozerox","tonexty","tonextx","toself","tonext"],dflt:"none",editType:"calc"},fillcolor:{valType:"color",editType:"style"},marker:c({symbol:{valType:"enumerated",values:l.symbolList,dflt:"circle",arrayOk:!0,editType:"style"},opacity:{valType:"number",min:0,max:1,arrayOk:!0,editType:"style"},size:{valType:"number",min:0,dflt:6,arrayOk:!0,editType:"calcIfAutorange"},maxdisplayed:{valType:"number",min:0,dflt:0,editType:"plot"},sizeref:{valType:"number",dflt:1,editType:"calc"},sizemin:{valType:"number",min:0,dflt:0,editType:"calc"},sizemode:{valType:"enumerated",values:["diameter","area"],dflt:"diameter",editType:"calc"},showscale:{valType:"boolean",dflt:!1,editType:"calc"},colorbar:a,line:c({width:{valType:"number",min:0,arrayOk:!0,editType:"style"},editType:"calc"},n("marker.line")),gradient:{type:{valType:"enumerated",values:["radial","horizontal","vertical","none"],arrayOk:!0,dflt:"none",editType:"calc"},color:{valType:"color",arrayOk:!0,editType:"calc"},editType:"calc"},editType:"calc"},n("marker")),selected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},unselected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},textposition:{valType:"enumerated",values:["top left","top center","top right","middle left","middle center","middle right","bottom left","bottom center","bottom right"],dflt:"middle center",arrayOk:!0,editType:"calc"},textfont:o({editType:"calc",colorEditType:"style",arrayOk:!0}),r:{valType:"data_array",editType:"calc"},t:{valType:"data_array",editType:"calc"},error_y:i,error_x:i}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../components/drawing":623,"../../components/drawing/attributes":622,"../../components/errorbars/attributes":625,"../../lib/extend":713,"../../plots/font_attributes":797,"./constants":1054}],1049:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("./subtypes"),s=t("./colorscale_calc"),l=t("./arrays_to_calcdata"),c=t("./calc_selection");function u(t,e){if(o.hasMarkers(t)){var r,n=t.marker,a=1.6*(t.marker.sizeref||1);if(r="area"===t.marker.sizemode?function(t){return Math.max(Math.sqrt((t||0)/a),3)}:function(t){return Math.max((t||0)/a,3)},Array.isArray(n.size)){var s={type:"linear"};i.setConvert(s);for(var l=s.makeCalcdata(t.marker,"size"),c=new Array(e),u=0;u<e;u++)c[u]=r(l[u]);return c}return r(n.size)}}e.exports={calc:function(t,e){var r=i.getFromId(t,e.xaxis||"x"),f=i.getFromId(t,e.yaxis||"y"),h=r.makeCalcdata(e,"x"),d=f.makeCalcdata(e,"y"),p=e._length;r._minDtick=0,f._minDtick=0;var m={padded:!0},v={padded:!0},g=u(e,p);g&&(m.ppad=v.ppad=g),!("tozerox"===e.fill||"tonextx"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?e.error_y.visible||-1===["tonexty","tozeroy"].indexOf(e.fill)&&(o.hasMarkers(e)||o.hasText(e))||(m.padded=!1,m.ppad=0):m.tozero=!0,!("tozeroy"===e.fill||"tonexty"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?-1!==["tonextx","tozerox"].indexOf(e.fill)&&(v.padded=!1):v.tozero=!0,i.expand(r,h,m),i.expand(f,d,v);for(var y=new Array(p),b=0;b<p;b++)y[b]=n(h[b])&&n(d[b])?{x:h[b],y:d[b]}:{x:a,y:a},e.ids&&(y[b].id=String(e.ids[b]));return l(y,e),s(e),c(y,e),t.firstscatter=!1,y},calcMarkerSize:u}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"./arrays_to_calcdata":1047,"./calc_selection":1050,"./colorscale_calc":1053,"./subtypes":1070,"fast-isnumeric":140}],1050:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){Array.isArray(e.selectedpoints)&&n.tagSelected(t,e)}},{"../../lib":724}],1051:[function(t,e,r){"use strict";e.exports=function(t){for(var e=0;e<t.length;e++){var r=t[e];if("scatter"===r.type){var n=r.fill;if("none"!==n&&"toself"!==n&&(r.opacity=void 0,"tonexty"===n||"tonextx"===n))for(var i=e-1;i>=0;i--){var a=t[i];if("scatter"===a.type&&a.xaxis===r.xaxis&&a.yaxis===r.yaxis){a.opacity=void 0;break}}}}}},{}],1052:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib"),a=t("../../plots/plots"),o=t("../../components/colorscale"),s=t("../../components/colorbar/draw");e.exports=function(t,e){var r=e[0].trace,l=r.marker,c="cb"+r.uid;if(t._fullLayout._infolayer.selectAll("."+c).remove(),void 0!==l&&l.showscale){var u=l.color,f=l.cmin,h=l.cmax;n(f)||(f=i.aggNums(Math.min,null,u)),n(h)||(h=i.aggNums(Math.max,null,u));var d=e[0].t.cb=s(t,c),p=o.makeColorScaleFunc(o.extractScale(l.colorscale,f,h),{noNumericCheck:!0});d.fillcolor(p).filllevels({start:f,end:h,size:(h-f)/254}).options(l.colorbar)()}else a.autoMargin(t,c)}},{"../../components/colorbar/draw":602,"../../components/colorscale":613,"../../lib":724,"../../plots/plots":833,"fast-isnumeric":140}],1053:[function(t,e,r){"use strict";var n=t("../../components/colorscale/has_colorscale"),i=t("../../components/colorscale/calc"),a=t("./subtypes");e.exports=function(t){a.hasLines(t)&&n(t,"line")&&i(t,t.line.color,"line","c"),a.hasMarkers(t)&&(n(t,"marker")&&i(t,t.marker.color,"marker","c"),n(t,"marker.line")&&i(t,t.marker.line.color,"marker.line","c"))}},{"../../components/colorscale/calc":605,"../../components/colorscale/has_colorscale":612,"./subtypes":1070}],1054:[function(t,e,r){"use strict";e.exports={PTS_LINESONLY:20,minTolerance:.2,toleranceGrowth:10,maxScreensAway:20}},{}],1055:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("./constants"),o=t("./subtypes"),s=t("./xy_defaults"),l=t("./marker_defaults"),c=t("./line_defaults"),u=t("./line_shape_defaults"),f=t("./text_defaults"),h=t("./fillcolor_defaults"),d=t("../../components/errorbars/defaults");e.exports=function(t,e,r,p){function m(r,a){return n.coerce(t,e,i,r,a)}var v=s(t,e,p,m),g=v<a.PTS_LINESONLY?"lines+markers":"lines";if(v){m("text"),m("hovertext"),m("mode",g),o.hasLines(e)&&(c(t,e,r,p,m),u(t,e,m),m("connectgaps"),m("line.simplify")),o.hasMarkers(e)&&l(t,e,r,p,m,{gradient:!0}),o.hasText(e)&&f(t,e,p,m);var y=[];(o.hasMarkers(e)||o.hasText(e))&&(m("cliponaxis"),m("marker.maxdisplayed"),y.push("points")),m("fill"),"none"!==e.fill&&(h(t,e,r,m),o.hasLines(e)||u(t,e,m)),"tonext"!==e.fill&&"toself"!==e.fill||y.push("fills"),m("hoveron",y.join("+")||"points"),d(t,e,r,{axis:"y"}),d(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,m)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"./attributes":1048,"./constants":1054,"./fillcolor_defaults":1057,"./line_defaults":1061,"./line_shape_defaults":1063,"./marker_defaults":1066,"./subtypes":1070,"./text_defaults":1071,"./xy_defaults":1072}],1056:[function(t,e,r){"use strict";var n=t("../../lib");function i(t){return t||0===t}e.exports=function(t,e,r){var a=Array.isArray(r)?function(t){r.push(t)}:function(t){r.text=t},o=n.extractOption(t,e,"htx","hovertext");if(i(o))return a(o);var s=n.extractOption(t,e,"tx","text");return i(s)?a(s):void 0}},{"../../lib":724}],1057:[function(t,e,r){"use strict";var n=t("../../components/color");e.exports=function(t,e,r,i){var a=!1;if(e.marker){var o=e.marker.color,s=(e.marker.line||{}).color;o&&!Array.isArray(o)?a=o:s&&!Array.isArray(s)&&(a=s)}i("fillcolor",n.addOpacity((e.line||{}).color||a||r,.5))}},{"../../components/color":598}],1058:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./subtypes");e.exports=function(t,e){var r,a;if("lines"===t.mode)return(r=t.line.color)&&n.opacity(r)?r:t.fillcolor;if("none"===t.mode)return t.fill?t.fillcolor:"";var o=e.mcc||(t.marker||{}).color,s=e.mlcc||((t.marker||{}).line||{}).color;return(a=o&&n.opacity(o)?o:s&&n.opacity(s)&&(e.mlw||((t.marker||{}).line||{}).width)?s:"")?n.opacity(a)<.3?n.addOpacity(a,.3):a:(r=(t.line||{}).color)&&n.opacity(r)&&i.hasLines(t)&&t.line.width?r:t.fillcolor}},{"../../components/color":598,"./subtypes":1070}],1059:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/fx"),a=t("../../components/errorbars"),o=t("./get_trace_color"),s=t("../../components/color"),l=t("./fill_hover_text"),c=i.constants.MAXDIST;e.exports=function(t,e,r,u){var f=t.cd,h=f[0].trace,d=t.xa,p=t.ya,m=d.c2p(e),v=p.c2p(r),g=[m,v],y=h.hoveron||"",b=-1!==h.mode.indexOf("markers")?3:.5;if(-1!==y.indexOf("points")){var x=i.getDistanceFunction(u,function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(d.c2p(t.x)-m);return n<e?r*n/e:n-e+r},function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(p.c2p(t.y)-v);return n<e?r*n/e:n-e+r},function(t){var 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s.opacity(h.fillcolor)?V=h.fillcolor:s.opacity((h.line||{}).color)&&(V=h.line.color),n.extendFlat(t,{distance:c+10,x0:N,x1:F,y0:U,y1:U,color:V}),delete t.index,h.text&&!Array.isArray(h.text)?t.text=String(h.text):t.text=h.name,[t]}}}},{"../../components/color":598,"../../components/errorbars":629,"../../components/fx":640,"../../lib":724,"./fill_hover_text":1056,"./get_trace_color":1058}],1060:[function(t,e,r){"use strict";var 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r=[i(t.x,t.error_x,e[0]),i(t.y,t.error_y,e[1]),i(t.z,t.error_z,e[2])],n=function(t){for(var e=0;e<t.length;e++)if(t[e])return t[e].length;return 0}(r);if(0===n)return null;for(var a=new Array(n),o=0;o<n;o++){for(var s=[[0,0,0],[0,0,0]],l=0;l<3;l++)if(r[l])for(var c=0;c<2;c++)s[c][l]=r[l][o][c];a[o]=s}return a}},{"../../components/errorbars/compute_error":627}],1076:[function(t,e,r){"use strict";var n=t("gl-line3d"),i=t("gl-scatter3d"),a=t("gl-error3d"),o=t("gl-mesh3d"),s=t("delaunay-triangulate"),l=t("../../lib"),c=t("../../lib/str2rgbarray"),u=t("../../lib/gl_format_color"),f=t("../scatter/make_bubble_size_func"),h=t("../../constants/gl3d_dashes"),d=t("../../constants/gl3d_markers"),p=t("./calc_errors");function m(t,e){this.scene=t,this.uid=e,this.linePlot=null,this.scatterPlot=null,this.errorBars=null,this.textMarkers=null,this.delaunayMesh=null,this.color=null,this.mode="",this.dataPoints=[],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.textLabels=null,this.data=null}var 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m=function(t,e,r){var n,i=(r+1)%3,a=(r+2)%3,o=[],l=[];for(n=0;n<t.length;++n){var c=t[n];!isNaN(c[i])&&isFinite(c[i])&&!isNaN(c[a])&&isFinite(c[a])&&(o.push([c[i],c[a]]),l.push(n))}var u=s(o);for(n=0;n<u.length;++n)for(var f=u[n],h=0;h<f.length;++h)f[h]=l[f[h]];return{positions:t,cells:u,meshColor:e}}(d.position,d.delaunayColor,d.delaunayAxis);m.opacity=t.opacity,this.delaunayMesh?this.delaunayMesh.update(m):(m.gl=u,this.delaunayMesh=o(m),this.delaunayMesh._trace=this,this.scene.glplot.add(this.delaunayMesh))}else 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n=t("../../registry"),i=t("../../lib"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/text_defaults"),c=t("../../components/errorbars/defaults"),u=t("./attributes");e.exports=function(t,e,r,f){function h(r,n){return i.coerce(t,e,u,r,n)}if(function(t,e,r,i){var a=0,o=r("x"),s=r("y"),l=r("z");n.getComponentMethod("calendars","handleTraceDefaults")(t,e,["x","y","z"],i),o&&s&&l&&(a=Math.min(o.length,s.length,l.length),e._xlength=e._ylength=e._zlength=a);return a}(t,e,h,f)){h("text"),h("hovertext"),h("mode"),a.hasLines(e)&&(h("connectgaps"),s(t,e,r,f,h)),a.hasMarkers(e)&&o(t,e,r,f,h,{noSelect:!0}),a.hasText(e)&&l(t,e,f,h,{noSelect:!0});var d=(e.line||{}).color,p=(e.marker||{}).color;h("surfaceaxis")>=0&&h("surfacecolor",d||p);for(var m=["x","y","z"],v=0;v<3;++v){var g="projection."+m[v];h(g+".show")&&(h(g+".opacity"),h(g+".scale"))}c(t,e,r,{axis:"z"}),c(t,e,r,{axis:"y",inherit:"z"}),c(t,e,r,{axis:"x",inherit:"z"})}else 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n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/colorbar/attributes"),s=t("../../lib/extend").extendFlat,l=n.marker,c=n.line,u=l.line;e.exports={carpet:{valType:"string",editType:"calc"},a:{valType:"data_array",editType:"calc"},b:{valType:"data_array",editType:"calc"},mode:s({},n.mode,{dflt:"markers"}),text:s({},n.text,{}),line:{color:c.color,width:c.width,dash:c.dash,shape:s({},c.shape,{values:["linear","spline"]}),smoothing:c.smoothing,editType:"calc"},connectgaps:n.connectgaps,fill:s({},n.fill,{values:["none","toself","tonext"]}),fillcolor:n.fillcolor,marker:s({symbol:l.symbol,opacity:l.opacity,maxdisplayed:l.maxdisplayed,size:l.size,sizeref:l.sizeref,sizemin:l.sizemin,sizemode:l.sizemode,line:s({width:u.width,editType:"calc"},a("marker".line)),gradient:l.gradient,editType:"calc"},a("marker"),{showscale:l.showscale,colorbar:o}),textfont:n.textfont,textposition:n.textposition,selected:n.selected,unselected:n.unselected,hoverinfo:s({},i.hoverinfo,{flags:["a","b","text","name"]}),hoveron:n.hoveron}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1080:[function(t,e,r){"use 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n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/line_shape_defaults"),c=t("../scatter/text_defaults"),u=t("../scatter/fillcolor_defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}d("carpet"),e.xaxis="x",e.yaxis="y";var p,m=d("a"),v=d("b");if(p=Math.min(m.length,v.length)){m&&p<m.length&&(e.a=m.slice(0,p)),v&&p<v.length&&(e.b=v.slice(0,p)),d("text"),d("mode",p<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(s(t,e,r,h,d),l(t,e,d),d("connectgaps")),a.hasMarkers(e)&&o(t,e,r,h,d,{gradient:!0}),a.hasText(e)&&c(t,e,h,d);var g=[];(a.hasMarkers(e)||a.hasText(e))&&(d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(u(t,e,r,d),a.hasLines(e)||l(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1079}],1082:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){var a=n[i];return t.a=a.a,t.b=a.b,t}},{}],1083:[function(t,e,r){"use strict";var n=t("../scatter/hover");e.exports=function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var o=a[0];if(void 0===o.index){var s=1-o.y0/t.ya._length,l=t.xa._length,c=l*s/2,u=l-c;return o.x0=Math.max(Math.min(o.x0,u),c),o.x1=Math.max(Math.min(o.x1,u),c),a}var f=o.cd[o.index];o.a=f.a,o.b=f.b,o.xLabelVal=void 0,o.yLabelVal=void 0;var h=o.trace,d=h._carpet,p=(f.hi||h.hoverinfo).split("+"),m=[];-1!==p.indexOf("all")&&(p=["a","b"]),-1!==p.indexOf("a")&&w(d.aaxis,f.a),-1!==p.indexOf("b")&&w(d.baxis,f.b);var v=d.ab2ij([f.a,f.b]),g=Math.floor(v[0]),y=v[0]-g,b=Math.floor(v[1]),x=v[1]-b,_=d.evalxy([],g,b,y,x);return m.push("y: "+_[1].toFixed(3)),o.extraText=m.join("<br>"),a}function w(t,e){var r;r=t.labelprefix&&t.labelprefix.length>0?t.labelprefix.replace(/ = $/,""):t._hovertitle,m.push(r+": "+e.toFixed(3)+t.labelsuffix)}}},{"../scatter/hover":1059}],1084:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("../scatter/style").style,n.hoverPoints=t("./hover"),n.selectPoints=t("../scatter/select"),n.eventData=t("./event_data"),n.moduleType="trace",n.name="scattercarpet",n.basePlotModule=t("../../plots/cartesian"),n.categories=["carpet","symbols","markerColorscale","showLegend","carpetDependent"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"../scatter/colorbar":1052,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1079,"./calc":1080,"./defaults":1081,"./event_data":1082,"./hover":1083,"./plot":1085}],1085:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../plots/cartesian/axes"),a=t("../../components/drawing");e.exports=function(t,e,r){var o,s,l,c=r[0][0].carpet,u={xaxis:i.getFromId(t,c.xaxis||"x"),yaxis:i.getFromId(t,c.yaxis||"y"),plot:e.plot};for(n(t,u,r),o=0;o<r.length;o++)s=r[o][0].trace,l=u.plot.selectAll("g.trace"+s.uid+" .js-line"),a.setClipUrl(l,c._clipPathId)}},{"../../components/drawing":623,"../../plots/cartesian/axes":770,"../scatter/plot":1067}],1086:[function(t,e,r){"use strict";var n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/drawing/attributes").dash,s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=n.marker,u=n.line,f=c.line;e.exports=l({lon:{valType:"data_array"},lat:{valType:"data_array"},locations:{valType:"data_array"},locationmode:{valType:"enumerated",values:["ISO-3","USA-states","country 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n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../scatter/colorscale_calc"),o=t("../scatter/arrays_to_calcdata"),s=t("../scatter/calc_selection"),l=t("../../lib")._;e.exports=function(t,e){for(var r=Array.isArray(e.locations),c=r?e.locations.length:e._length,u=new Array(c),f=0;f<c;f++){var h=u[f]={};if(r){var d=e.locations[f];h.loc="string"==typeof d?d:null}else{var p=e.lon[f],m=e.lat[f];n(p)&&n(m)?h.lonlat=[+p,+m]:h.lonlat=[i,i]}}return o(u,e),a(e),s(u,e),c&&(u[0].t={labels:{lat:l(t,"lat:")+" ",lon:l(t,"lon:")+" "}}),u}},{"../../constants/numerical":702,"../../lib":724,"../scatter/arrays_to_calcdata":1047,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1088:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/text_defaults"),l=t("../scatter/fillcolor_defaults"),c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}!function(t,e,r){var n,i,a=0,o=r("locations");if(o)return r("locationmode"),a=o.length;return n=r("lon")||[],i=r("lat")||[],a=Math.min(n.length,i.length),e._length=a,a}(0,e,f)?e.visible=!1:(f("text"),f("hovertext"),f("mode"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps")),i.hasMarkers(e)&&a(t,e,r,u,f,{gradient:!0}),i.hasText(e)&&s(t,e,u,f),f("fill"),"none"!==e.fill&&l(t,e,r,f))}},{"../../lib":724,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1086}],1089:[function(t,e,r){"use strict";e.exports=function(t,e){return t.lon=e.lon,t.lat=e.lat,t.location=e.loc?e.loc:null,t}},{}],1090:[function(t,e,r){"use strict";var n=t("../../components/fx"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("../scatter/get_trace_color"),s=t("../scatter/fill_hover_text"),l=t("./attributes");e.exports=function(t,e,r){var c=t.cd,u=c[0].trace,f=t.xa,h=t.ya,d=t.subplot,p=d.projection.isLonLatOverEdges,m=d.project;if(n.getClosest(c,function(t){var n=t.lonlat;if(n[0]===a)return 1/0;if(p(n))return 1/0;var i=m(n),o=m([e,r]),s=Math.abs(i[0]-o[0]),l=Math.abs(i[1]-o[1]),c=Math.max(3,t.mrc||0);return Math.max(Math.sqrt(s*s+l*l)-c,1-3/c)},t),!1!==t.index){var v=c[t.index],g=v.lonlat,y=[f.c2p(g),h.c2p(g)],b=v.mrc||1;return t.x0=y[0]-b,t.x1=y[0]+b,t.y0=y[1]-b,t.y1=y[1]+b,t.loc=v.loc,t.lon=g[0],t.lat=g[1],t.color=o(u,v),t.extraText=function(t,e,r,n){var a=e.hi||t.hoverinfo,o="all"===a?l.hoverinfo.flags:a.split("+"),c=-1!==o.indexOf("location")&&Array.isArray(t.locations),u=-1!==o.indexOf("lon"),f=-1!==o.indexOf("lat"),h=-1!==o.indexOf("text"),d=[];function p(t){return i.tickText(r,r.c2l(t),"hover").text+"\xb0"}c?d.push(e.loc):u&&f?d.push("("+p(e.lonlat[0])+", "+p(e.lonlat[1])+")"):u?d.push(n.lon+p(e.lonlat[0])):f&&d.push(n.lat+p(e.lonlat[1]));h&&s(e,t,d);return d.join("<br>")}(u,v,d.mockAxis,c[0].t.labels),[t]}}},{"../../components/fx":640,"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/fill_hover_text":1056,"../scatter/get_trace_color":1058,"./attributes":1086}],1091:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.hoverPoints=t("./hover"),n.eventData=t("./event_data"),n.selectPoints=t("./select"),n.moduleType="trace",n.name="scattergeo",n.basePlotModule=t("../../plots/geo"),n.categories=["geo","symbols","markerColorscale","showLegend","scatter-like"],n.meta={},e.exports=n},{"../../plots/geo":801,"../scatter/colorbar":1052,"./attributes":1086,"./calc":1087,"./defaults":1088,"./event_data":1089,"./hover":1090,"./plot":1092,"./select":1093,"./style":1094}],1092:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../../constants/numerical").BADNUM,o=t("../../lib/topojson_utils").getTopojsonFeatures,s=t("../../lib/geo_location_utils").locationToFeature,l=t("../../lib/geojson_utils"),c=t("../scatter/subtypes"),u=t("./style");function f(t,e){var r=t[0].trace;if(Array.isArray(r.locations))for(var n=o(r,e),i=r.locationmode,l=0;l<t.length;l++){var c=t[l],u=s(i,c.loc,n);c.lonlat=u?u.properties.ct:[a,a]}}e.exports=function(t,e,r){for(var o=0;o<r.length;o++)f(r[o],e.topojson);function s(t,e){t.lonlat[0]===a&&n.select(e).remove()}var h=e.layers.frontplot.select(".scatterlayer").selectAll("g.trace.scattergeo").data(r,function(t){return t[0].trace.uid});h.enter().append("g").attr("class","trace scattergeo"),h.exit().remove(),h.selectAll("*").remove(),h.each(function(e){var r=e[0].node3=n.select(this),a=e[0].trace;if(c.hasLines(a)||"none"!==a.fill){var o=l.calcTraceToLineCoords(e),f="none"!==a.fill?l.makePolygon(o):l.makeLine(o);r.selectAll("path.js-line").data([{geojson:f,trace:a}]).enter().append("path").classed("js-line",!0).style("stroke-miterlimit",2)}c.hasMarkers(a)&&r.selectAll("path.point").data(i.identity).enter().append("path").classed("point",!0).each(function(t){s(t,this)}),c.hasText(a)&&r.selectAll("g").data(i.identity).enter().append("g").append("text").each(function(t){s(t,this)}),u(t,e)})}},{"../../constants/numerical":702,"../../lib":724,"../../lib/geo_location_utils":716,"../../lib/geojson_utils":717,"../../lib/topojson_utils":750,"../scatter/subtypes":1070,"./style":1094,d3:128}],1093:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h)&&!n.hasText(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1094:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/drawing"),a=t("../../components/color"),o=t("../scatter/style").stylePoints;e.exports=function(t,e){e&&function(t,e){var r=e[0].trace,s=e[0].node3;s.style("opacity",e[0].trace.opacity),o(s,r,t),s.selectAll("path.js-line").style("fill","none").each(function(t){var e=n.select(this),r=t.trace,o=r.line||{};e.call(a.stroke,o.color).call(i.dashLine,o.dash||"",o.width||0),"none"!==r.fill&&e.call(a.fill,r.fillcolor)})}(t,e)}},{"../../components/color":598,"../../components/drawing":623,"../scatter/style":1069,d3:128}],1095:[function(t,e,r){"use strict";var n=t("../../plots/attributes"),i=t("../scatter/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../constants/gl2d_dashes"),s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=i.line,u=i.marker,f=u.line,h=e.exports=l({x:i.x,x0:i.x0,dx:i.dx,y:i.y,y0:i.y0,dy:i.dy,text:s({},i.text,{}),mode:{valType:"flaglist",flags:["lines","markers"],extras:["none"]},line:{color:c.color,width:c.width,dash:{valType:"enumerated",values:Object.keys(o),dflt:"solid"}},marker:s({},a("marker"),{symbol:u.symbol,size:u.size,sizeref:u.sizeref,sizemin:u.sizemin,sizemode:u.sizemode,opacity:u.opacity,showscale:u.showscale,colorbar:u.colorbar,line:s({},a("marker.line"),{width:f.width})}),connectgaps:i.connectgaps,fill:i.fill,fillcolor:i.fillcolor,hoveron:i.hoveron,selected:{marker:i.selected.marker},unselected:{marker:i.unselected.marker},opacity:s({},n.opacity,{editType:"calc"}),error_y:i.error_y,error_x:i.error_x},"calc","nested");h.x.editType=h.y.editType=h.x0.editType=h.y0.editType="calc+clearAxisTypes"},{"../../components/colorscale/color_attributes":606,"../../constants/gl2d_dashes":698,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../scatter/attributes":1048}],1096:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/xy_defaults"),s=t("../scatter/marker_defaults"),l=t("../scatter/line_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../../components/errorbars/defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=!!t.marker&&/-open/.test(t.marker.symbol),m=a.isBubble(t),v=o(t,e,h,d);if(v){d("text"),d("mode",v<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(d("connectgaps"),l(t,e,r,h,d));var g=[];a.hasMarkers(e)&&(s(t,e,r,h,d),d("marker.line.width",p||m?1:0),g.push("points")),d("fill"),"none"!==e.fill&&c(t,e,r,d),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),u(t,e,r,{axis:"y"}),u(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/xy_defaults":1072,"./attributes":1095}],1097:[function(t,e,r){(function(r){"use strict";var n=t("../../lib"),i=t("../scatter/get_trace_color"),a=t("../../components/errorbars"),o=t("object-assign"),s=t("../../plots/cartesian/axes"),l=t("kdgrass"),c=t("../../components/fx"),u=t("../scatter/subtypes"),f=t("../scatter/colorscale_calc"),h=t("../../components/drawing"),d=t("../scatter/make_bubble_size_func"),p=t("../../constants/gl2d_dashes"),m=t("../../lib/gl_format_color"),v=t("../scatter/link_traces"),g=t("regl-scatter2d"),y=t("regl-line2d"),b=t("regl-error2d"),x=t("color-normalize"),_=t("svg-path-sdf"),w=t("regl"),M=t("array-range"),k=t("../scatter/fill_hover_text"),A=t("fast-isnumeric"),T=c.constants.MAXDIST,E=200,S=20,L=S/20,C={},P=h.symbolFuncs[0](.05*S),z=1e5,O=/-dot/;function D(t,e,r,n){var 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t=this.map;t.removeLayer(this.idLayerFill),t.removeLayer(this.idLayerLine),t.removeLayer(this.idLayerCircle),t.removeLayer(this.idLayerSymbol),t.removeSource(this.idSourceFill),t.removeSource(this.idSourceLine),t.removeSource(this.idSourceCircle),t.removeSource(this.idSourceSymbol)},e.exports=function(t,e){var r=new i(t,e[0].trace.uid);return r.update(e),r}},{"./convert":1099}],1105:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1106:[function(t,e,r){"use strict";var n=t("../../lib/extend").extendFlat,i=t("../scatter/attributes"),a=t("../../plots/attributes"),o=i.line;e.exports={mode:i.mode,r:{valType:"data_array",editType:"calc+clearAxisTypes"},theta:{valType:"data_array",editType:"calc+clearAxisTypes"},thetaunit:{valType:"enumerated",values:["radians","degrees","gradians"],dflt:"degrees",editType:"calc+clearAxisTypes"},text:i.text,hovertext:i.hovertext,line:{color:o.color,width:o.width,dash:o.dash,shape:n({},o.shape,{values:["linear","spline"]}),smoothing:o.smoothing,editType:"calc"},connectgaps:i.connectgaps,marker:i.marker,cliponaxis:n({},i.cliponaxis,{dflt:!1}),textposition:i.textposition,textfont:i.textfont,fill:n({},i.fill,{values:["none","toself","tonext"]}),fillcolor:i.fillcolor,hoverinfo:n({},a.hoverinfo,{flags:["r","theta","text","name"]}),hoveron:i.hoveron,selected:i.selected,unselected:i.unselected}},{"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1107:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../../plots/cartesian/axes"),o=t("../scatter/colorscale_calc"),s=t("../scatter/arrays_to_calcdata"),l=t("../scatter/calc_selection"),c=t("../scatter/calc").calcMarkerSize;e.exports=function(t,e){var r,u=t._fullLayout,f=e.subplot,h=u[f].radialaxis,d=u[f].angularaxis,p=h.makeCalcdata(e,"r"),m=d.makeCalcdata(e,"theta"),v=e._length,g=new Array(v);for(var y=0;y<v;y++){var b=p[y],x=m[y],_=g[y]={};n(b)&&n(x)?(_.r=b,_.theta=x,_.rad=(r=x,d.c2rad(r,e.thetaunit))):_.r=i}var w=c(e,v);return a.expand(h,p,{ppad:w}),"linear"!==d.type&&(d.autorange=!0,a.expand(d,m),delete d.autorange),o(e),s(g,e),l(g,e),g}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/arrays_to_calcdata":1047,"../scatter/calc":1049,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1108:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/line_shape_defaults"),l=t("../scatter/text_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../scatter/constants").PTS_LINESONLY,f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=d("r"),m=d("theta"),v=p&&m?Math.min(p.length,m.length):0;if(v){e._length=v,d("thetaunit"),d("mode",v<u?"lines+markers":"lines"),d("text"),d("hovertext"),i.hasLines(e)&&(o(t,e,r,h,d),s(t,e,d),d("connectgaps")),i.hasMarkers(e)&&a(t,e,r,h,d,{gradient:!0}),i.hasText(e)&&l(t,e,h,d);var g=[];(i.hasMarkers(e)||i.hasText(e))&&(d("cliponaxis"),d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(c(t,e,r,d),i.hasLines(e)||s(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1106}],1109:[function(t,e,r){"use strict";var n=t("../scatter/hover"),i=t("../../plots/cartesian/axes"),a=t("../../lib");function o(t,e,r){var n=r.radialAxis,o=r.angularAxis,s=(t.hi||e.hoverinfo).split("+"),l=[];n._hovertitle="r",o._hovertitle="\u03b8";var c,u=o._c2rad(t.theta,e.thetaunit);function f(t,e){l.push(t._hovertitle+": "+i.tickText(t,e,"hover").text)}return c="linear"===o.type&&e.thetaunit!==o.thetaunit?"degrees"===o.thetaunit?a.rad2deg(u):u:t.theta,-1!==s.indexOf("all")&&(s=["r","theta"]),-1!==s.indexOf("r")&&f(n,n.c2r(t.r)),-1!==s.indexOf("theta")&&f(o,c),l.join("<br>")}e.exports={hoverPoints:function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var s=a[0];if(void 0===s.index)return a;var l=t.subplot,c=s.cd[s.index],u=s.trace;if(l.isPtWithinSector(c))return s.xLabelVal=void 0,s.yLabelVal=void 0,s.extraText=o(c,u,l),a}},makeHoverPointText:o}},{"../../lib":724,"../../plots/cartesian/axes":770,"../scatter/hover":1059}],1110:[function(t,e,r){"use strict";e.exports={moduleType:"trace",name:"scatterpolar",basePlotModule:t("../../plots/polar"),categories:["polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:t("./calc"),plot:t("./plot"),style:t("../scatter/style").style,hoverPoints:t("./hover").hoverPoints,selectPoints:t("../scatter/select"),meta:{}}},{"../../plots/polar":836,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1106,"./calc":1107,"./defaults":1108,"./hover":1109,"./plot":1111}],1111:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../constants/numerical").BADNUM;e.exports=function(t,e,r){var a,o,s,l={xaxis:e.xaxis,yaxis:e.yaxis,plot:e.framework,layerClipId:e._hasClipOnAxisFalse?e.clipIds.circle:null},c=e.radialAxis,u=c.range;for(s=u[0]>u[1]?function(t){return t<=0}:function(t){return t>=0},a=0;a<r.length;a++)for(o=0;o<r[a].length;o++){var f=r[a][o],h=f.r;if(h!==i){var d=c.c2r(h)-u[0];if(s(d)){var p=f.rad;f.x=d*Math.cos(p),f.y=d*Math.sin(p);continue}f.intoCenter=[e.cxx,e.cyy]}f.x=i,f.y=i}n(t,l,r)}},{"../../constants/numerical":702,"../scatter/plot":1067}],1112:[function(t,e,r){"use strict";var n=t("../scatterpolar/attributes"),i=t("../scattergl/attributes");e.exports={mode:n.mode,r:n.r,theta:n.theta,thetaunit:n.thetaunit,text:n.text,line:i.line,connectgaps:i.connectgaps,marker:i.marker,fill:i.fill,fillcolor:i.fillcolor,hoverinfo:n.hoverinfo,hoveron:n.hoveron,selected:n.selected,unselected:n.unselected}},{"../scattergl/attributes":1095,"../scatterpolar/attributes":1106}],1113:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/fillcolor_defaults"),l=t("../scatter/constants").PTS_LINESONLY,c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}var h=f("r"),d=f("theta"),p=h&&d?Math.min(h.length,d.length):0;if(p){e._length=p,f("thetaunit"),f("mode",p<l?"lines+markers":"lines"),f("text"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps"));var m=[];i.hasMarkers(e)&&(a(t,e,r,u,f),m.push("points")),f("fill"),"none"!==e.fill&&s(t,e,r,f),"tonext"!==e.fill&&"toself"!==e.fill||m.push("fills"),f("hoveron",m.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,f)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"./attributes":1112}],1114:[function(t,e,r){"use strict";var n=t("kdgrass"),i=t("fast-isnumeric"),a=t("../scattergl"),o=t("../scatter/colorscale_calc"),s=t("../../plots/cartesian/axes"),l=t("../scatterpolar/hover").makeHoverPointText,c=t("../scatter/subtypes");e.exports={moduleType:"trace",name:"scatterpolargl",basePlotModule:t("../../plots/polar"),categories:["gl","regl","polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:function(t,e){var r=t._fullLayout,n=e.subplot,i=r[n].radialaxis,a=r[n].angularaxis,l=i.makeCalcdata(e,"r"),c=a.makeCalcdata(e,"theta"),u={};return e._length<l.length&&(l=l.slice(0,e._length)),e._length<c.length&&(c=c.slice(0,e._length)),o(e),u.r=l,u.theta=c,s.expand(i,l,{tozero:!0}),"linear"!==a.type&&(a.autorange=!0,s.expand(a,c),delete a.autorange),[{x:!1,y:!1,t:u,trace:e}]},plot:function(t,e,r){var o=e.radialAxis,s=e.angularAxis,l=o.range,u=a.sceneUpdate(t,e);return u.clear(),r.forEach(function(f,h){if(f&&f[0]&&f[0].trace){var d,p,m,v,g,y=f[0],b=y.trace,x=y.t,_=x.r,w=x.theta,M=_.slice(),k=w.slice();for(d=0;d<_.length;d++)p=_[d],v=w[d],g=s.c2rad(v,b.thetaunit),e.isPtWithinSector({r:p,rad:g})||(M[d]=NaN,k[d]=NaN);var A,T=_.length,E=new Array(2*T),S=Array(T),L=Array(T);for(d=0;d<T;d++)p=M[d],v=k[d],i(p)&&i(v)&&p>=0?(m=o.c2r(p)-l[0],A=v,g=s.c2rad(A,b.thetaunit),S[d]=E[2*d]=m*Math.cos(g),L[d]=E[2*d+1]=m*Math.sin(g)):S[d]=L[d]=E[2*d]=E[2*d+1]=NaN;var C=a.sceneOptions(t,e,b,E);C.fill&&!u.fill2d&&(u.fill2d=!0),C.marker&&!u.scatter2d&&(u.scatter2d=!0),C.line&&!u.line2d&&(u.line2d=!0),!C.errorX&&!C.errorY||u.error2d||(u.error2d=!0),c.hasMarkers(b)&&(C.selected.positions=C.unselected.positions=C.marker.positions),u.lineOptions.push(C.line),u.errorXOptions.push(C.errorX),u.errorYOptions.push(C.errorY),u.fillOptions.push(C.fill),u.markerOptions.push(C.marker),u.selectedOptions.push(C.selected),u.unselectedOptions.push(C.unselected),u.count=r.length,x.scene=u,x.index=h,x.x=S,x.y=L,x.rawx=S,x.rawy=L,x.r=_,x.theta=w,x.positions=E,x.count=T,x.tree=n(E,512)}}),a.plot(t,e,r)},hoverPoints:function(t,e,r,n){var i=t.cd[0].t,o=i.r,s=i.theta,c=a.hoverPoints(t,e,r,n);if(c&&!1!==c[0].index){var u=c[0];if(void 0===u.index)return c;var f=t.subplot,h=f.angularAxis,d=u.cd[u.index],p=u.trace;if(d.r=o[u.index],d.theta=s[u.index],d.rad=h.c2rad(d.theta,p.thetaunit),f.isPtWithinSector(d))return u.xLabelVal=void 0,u.yLabelVal=void 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n=t("../../lib/extend").extendFlat;r.splitToPanels=function(t){var e=[0,0],r=n({},t,{key:"header",type:"header",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!0,values:t.calcdata.headerCells.values[t.specIndex],rowBlocks:t.calcdata.headerRowBlocks,calcdata:n({},t.calcdata,{cells:t.calcdata.headerCells})});return[n({},t,{key:"cells1",type:"cells",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),n({},t,{key:"cells2",type:"cells",page:1,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),r]},r.splitToCells=function(t){var e=function(t){var e=t.rowBlocks[t.page],r=e?e.rows[0].rowIndex:0,n=e?r+e.rows.length:0;return[r,n]}(t);return(t.values||[]).slice(e[0],e[1]).map(function(r,n){return{keyWithinBlock:n+("string"==typeof r&&r.match(/[<$&> 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n=t("../box/attributes"),i=t("../../lib/extend").extendFlat;e.exports={y:n.y,x:n.x,x0:n.x0,y0:n.y0,name:n.name,orientation:i({},n.orientation,{}),bandwidth:{valType:"number",min:0,editType:"calc"},scalegroup:{valType:"string",dflt:"",editType:"calc"},scalemode:{valType:"enumerated",values:["width","count"],dflt:"width",editType:"calc"},spanmode:{valType:"enumerated",values:["soft","hard","manual"],dflt:"soft",editType:"calc"},span:{valType:"info_array",items:[{valType:"any",editType:"calc"},{valType:"any",editType:"calc"}],editType:"calc"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},editType:"plot"},fillcolor:n.fillcolor,points:i({},n.boxpoints,{}),jitter:i({},n.jitter,{}),pointpos:i({},n.pointpos,{}),marker:n.marker,text:n.text,box:{visible:{valType:"boolean",dflt:!1,editType:"plot"},width:{valType:"number",min:0,max:1,dflt:.25,editType:"plot"},fillcolor:{valType:"color",editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"style"},editType:"plot"},meanline:{visible:{valType:"boolean",dflt:!1,editType:"plot"},color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"plot"},side:{valType:"enumerated",values:["both","positive","negative"],dflt:"both",editType:"plot"},selected:n.selected,unselected:n.unselected,hoveron:{valType:"flaglist",flags:["violins","points","kde"],dflt:"violins+points+kde",extras:["all"],editType:"style"}}},{"../../lib/extend":713,"../box/attributes":877}],1138:[function(t,e,r){"use 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r=t[0],a=r.t,s=r.trace,d=r.node3=n.select(this),p=c._numViolins,m="group"===c.violinmode&&p>1,v=a.bdPos=a.dPos*(1-c.violingap)*(1-c.violingroupgap)/(m?p:1),g=a.bPos=m?2*a.dPos*((a.num+.5)/p-.5)*(1-c.violingap):0;if(!0!==s.visible||a.empty)n.select(this).remove();else{var y=e[a.valLetter+"axis"],b=e[a.posLetter+"axis"],x="both"===s.side,_=x||"positive"===s.side,w=x||"negative"===s.side,M=s.box&&s.box.visible,k=s.meanline&&s.meanline.visible,A=c._violinScaleGroupStats[s.scalegroup];if(d.selectAll("path.violin").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","violin").each(function(t){var e,r,i,o,l,c,u,f,d=n.select(this),p=t.density,m=p.length,M=t.pos+g,k=b.c2p(M);switch(s.scalemode){case"width":e=A.maxWidth/v;break;case"count":e=A.maxWidth/v*(A.maxCount/t.pts.length)}if(_){for(u=new Array(m),l=0;l<m;l++)(f=u[l]={})[a.posLetter]=M+p[l].v/e,f[a.valLetter]=p[l].t;r=h(u)}if(w){for(u=new 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+
+
+
+// JavaScript used to power the Nextflow Report Template output.
+
+//
+// Converter methods
+//
+
+/**
+ * Converts a list of numbers in milli-units (mWh, mg,...) to base units (Wh, g)
+ * @param {ArrayLike} list An array with numbers
+ * @returns The array, with each value divided by 1000
+ */
+function norm_units( list ) {
+  return list?.map(v => v / 1000) ?? null;
+}
+
+/**
+ * Convert to readable units, optionally with a starting scope and a unit label
+ *
+ * @param {*} value The value to be converted
+ * @param {*} scope The current scope of the value
+ * @param {*} unit The unit of the value
+ * @returns Decimally shifted value
+ */
+function toReadableUnits(value, scope = '', unit = '') {
+  var scopes = ['p', 'n', 'u', 'm', '', 'K', 'M', 'G', 'T', 'P', 'E']; // Units: pico, nano, micro, milli, 0, Kilo, Mega, Giga, Tera, Peta, Exa
+  var scopeIndex = scopes.indexOf(scope);
+
+  while (value >= 1000 && scopeIndex < scopes.length - 1) {
+    value /= 1000;
+    scopeIndex++;
+  }
+  while (value <= 1 && scopeIndex > 0) {
+    value *= 1000;
+    scopeIndex--;
+  }
+
+  value = Math.round(value * 100) / 100;
+  return value + ' ' + scopes[scopeIndex] + unit;
+}
+
+
+/**
+ * Convert bytes to readable units, starting from a specified unit.
+ *
+ * @param {*} value The value to be converted (e.g., 1, 1024, etc.)
+ * @param {string} currentUnit The unit of the input value (default: 'B')
+ * @returns Bytes in a readable scope
+ */
+function toReadableByteUnits(value, currentUnit = 'B') {
+  var units = ['B', 'KB', 'MB', 'GB', 'TB', 'PB', 'EB']; // Units: Byte, Kilobyte, Megabyte, etc.
+  var unit_index = units.indexOf(currentUnit);
+
+  while (value >= 1024 && unit_index < units.length - 1) {
+    value /= 1024;
+    unit_index++;
+  }
+
+  return value + ' ' + units[unit_index];
+}
+
+/**
+ * Converts the given time to another unit of time
+ *
+ * @param {*} value The time as a number in original given unit
+ * @param {*} unit Given unit of time
+ * @param {*} targetUnit Unit of time to be converted to
+ * @return Number of converted time
+ */
+function convertTime(value, unit='ms', targetUnit='s') {
+    var units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years']   // Units of time
+    var steps = [1000.0, 1000.0, 1000.0, 60.0, 60.0, 24.0, 7.0, 4.35, 12.0]                // (Average) magnitude change between units
+
+    var givenUnitPos = units.indexOf(unit)
+    var targetUnitPos = units.indexOf(targetUnit)
+
+
+    // Obtain conversion rates in the given range
+    if (targetUnitPos > givenUnitPos) {
+      steps.slice(givenUnitPos, targetUnitPos).forEach( function(it) { value /= it} )
+    }
+    else if (targetUnitPos < givenUnitPos) {
+      steps.slice(targetUnitPos, givenUnitPos).forEach( function(it) { value *= it} )
+    }
+
+    return value
+}
+
+/**
+ * Converts a time value to a human-readable string
+ *
+ * @param {*} value The time as a number in original given unit
+ * @param {*} unit Given unit of time
+ * @param {*} smallestUnit The smallest unit to convert to
+ * @param {*} largestUnit The largest unit to convert to
+ * @param {*} threshold The minimum value for the conversion to be included in the output
+ * @return A human-readable string representation of the time value
+ */
+function toReadableTimeUnits(value, unit = 'ms', smallestUnit = 's', largestUnit = 'years', threshold = null) {
+  const units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years'];
+  const steps = [1000, 1000, 1000, 60, 60, 24, 7, 4.35, 12];
+
+  const smallestIdx = units.indexOf(smallestUnit);
+  const largestIdx = units.indexOf(largestUnit);
+  if (smallestIdx === -1 || largestIdx === -1) throw new Error("Unknown unit");
+
+  let remaining = convertTime(value, unit, units[largestIdx]);
+  let parts = [];
+
+  for (let i = largestIdx; i >= smallestIdx; i--) {
+    let unitValue;
+    if (i > smallestIdx) {
+      unitValue = Math.floor(remaining);
+      remaining = (remaining - unitValue) * steps[i - 1];
+    } else {
+      // For the smallest unit, keep up to 2 decimals
+      unitValue = Math.round(remaining * 100) / 100;
+      remaining = 0;
+    }
+
+    if ((threshold === null && unitValue > 0) || (threshold !== null && unitValue > threshold)) {
+      let label = (unitValue === 1 && ['days', 'weeks', 'months', 'years'].includes(units[i]))
+        ? units[i].slice(0, -1)
+        : units[i];
+      let formatted = parseFloat(unitValue).toString();
+      parts.push(`${formatted}${label}`);
+    }
+  }
+
+  // Carry-over: if the last unit is exactly the conversion factor, increment previous unit
+  if (parts.length && smallestIdx > 0) {
+    let lastPart = parts[parts.length - 1];
+    let lastValue = parseFloat(lastPart.replace(/[^\d.]/g, ''));
+    let lastUnit = lastPart.replace(/[\d.]/g, '');
+    let conversionFactor = steps[smallestIdx - 1];
+    if (lastValue === conversionFactor) {
+      parts.pop();
+      let prevPart = parts[parts.length - 1];
+      let prevNum = parseFloat(prevPart.replace(/[^\d.]/g, ''));
+      let prevUnit = prevPart.replace(/[\d.]/g, '');
+      let newPrev = prevNum + 1;
+      parts[parts.length - 1] = `${parseFloat(newPrev).toString()}${prevUnit}`;
+    }
+  }
+
+  return parts.length ? parts.join(' ') : `0${smallestUnit}`;
+}
+
+//
+// Render functions
+//
+
+/**
+ * Perform checks on the data before using other methods to process
+ *
+ * @param {*} data The data (number/string/...)
+ * @param {*} type Type of the data
+ * @param {function} parseFunction Function to parse the data
+ * @returns
+ */
+function check_data(data, type, parseFunction) {
+  if (type === 'sort') {
+    return parseFunction(data);
+  }
+  if($('#nf-table-humanreadable').val() == 'false'){
+    return data;
+  }
+  if (data == '-' || data == 0){
+    return data;
+  }
+  return null
+}
+
+/**
+ * Render CO2 equivalents in desired output format
+ *
+ * @param {*} value CO2 equivalents in milli-grams
+ * @param {*} type Type of the data
+ * @returns CO2 equivalents as a readable unit
+ */
+function make_co2e(value, type){
+  return check_data(value, type, parseFloat) ?? toReadableUnits(value, 'm', 'g');
+}
+
+/**
+ * Render energy in desired output format
+ *
+ * @param {*} mWh Energy in milli-Watt-hours
+ * @param {*} type Type of the data
+ * @returns Energy as a readable unit
+ */
+function make_energy(mWh, type){
+  return check_data(mWh, type, parseFloat) ?? toReadableUnits(mWh, 'm', 'Wh');
+}
+
+/**
+ * Render time in desired output format
+ *
+ * @param {*} h Time in hours
+ * @param {*} type Type of the data
+ * @returns The readable time
+ */
+function make_time(h, type){
+  return check_data(data, type, parseFloat) ?? toReadableTimeUnits(parseFloat(h), 'h', 'ms', 'days', 0.0);
+}
+
+/**
+ * Render carbon intensity in desired output format
+ *
+ * @param {*} ci Carbon intensity value
+ * @param {*} type Type of the data
+ * @returns Carbon intensity as a readable unit
+ */
+function make_carbon_intensity(ci, type) {
+  return check_data(data, type, parseFloat) ?? toReadableUnits(ci, 'm', 'gCO<sub>2</sub>e/kWh');
+}
+
+/**
+ * Render memory size in desired output format
+ *
+ * @param {*} value Memory value to be rendered
+ * @param {*} type Type of the data
+ * @param {string} unit The unit of the input value (default: 'B')
+ * @returns The memory at a readable scale
+ */
+function make_memory(value, type) {
+  return check_data(value, type, parseFloat) ?? toReadableByteUnits(value, 'GB');
+}
+
+/**
+ * Render the per core power draw in desired output format
+ *
+ * @param {*} powerDrawCPU Power draw of the CPU in Watts
+ * @param {*} type Type of the data
+ * @returns Readable power draw in Watts
+ */
+function make_power_draw_cpu(powerDrawCPU, type) {
+  return check_data(powerDrawCPU, type, parseFloat) ?? powerDrawCPU;
+}
+
+/**
+ * Render usage factor in desired output format
+ *
+ * @param {*} usageFactor Usage factor of CPU in percent
+ * @param {*} type Type of the data
+ * @returns Readable usage factor
+ */
+function make_core_usage_factor(usageFactor, type){
+  return check_data(usageFactor, type, parseFloat) ?? usageFactor;
+}
+
+// Map for collecting statistics by process
+window.statsByProcess = {};
+
+//
+// This block is only executed after the page is fully loaded
+//
+$(function() {
+  // Script block clicked
+  $('#tasks_table').on('click', '.script_block', function(e){
+    e.preventDefault();
+    $(this).toggleClass('short');
+  });
+
+  $(function() {
+    $('[data-toggle="tooltip"]').tooltip()
+  })
+
+  // Completed date from now
+  var completed_date = moment( $('#workflow_complete').text(), "ddd MMM DD HH:mm:ss .* YYYY" );
+  if(completed_date.isValid()){
+    $('#completed_fromnow').html('completed ' + completed_date.fromNow() + ', ');
+  }
+
+  // Collect metrics by process
+  for(let processName in window.data.summary){
+    let metrics = window.data.summary[processName];
+
+    // Add an empty map if the process is not already present
+    window.statsByProcess[processName] ??= {};
+
+    for (let metricName in metrics) {
+      // Skip if metric is not present
+      if (metrics[metricName] == null) { continue; }
+
+      if( metrics[metricName]['min'] == metrics[metricName]['max'] ) {
+        // min equals max ==> show just a value
+        window.statsByProcess[processName][metricName] = [ metrics[metricName]['min'] ];
+      }
+      else {
+          // otherwise show all values
+          window.statsByProcess[processName][metricName] = ['min', 'q1', 'q2', 'q3', 'max'].map(stat => metrics[metricName][stat])
+      }
+      if (metricName == "time") {
+        window.statsByProcess[processName][metricName] = window.statsByProcess[processName][metricName].map(function(d,i){
+          return moment.duration(d).asMinutes().toFixed(1);
+        });
+      }
+    }
+  }
+
+  // Plot histograms of resource usage
+  var plot_data_total = [];
+  var plot_data_non_cached = [];
+  for(var processName in window.statsByProcess){
+
+    // Extract process statistics
+    var stats = window.statsByProcess[processName];
+
+    // Add CO2 Boxplot to plot
+    plot_data_total.push(
+      {
+        x:processName, y: norm_units(stats.co2e), name: processName,
+        type:'box', boxmean: true, boxpoints: false
+      }
+    );
+
+    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
+    plot_data_total.push(
+      {
+        x:processName, y: norm_units(stats.energy), name: processName,
+        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
+        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
+      }
+    );
+
+    // Add outline of CO2 emissions from non-cached processes to plot
+    plot_data_non_cached.push(
+      {
+        x:processName, y: norm_units(stats.co2e_non_cached), name: processName,
+        type:'box', boxmean: true, boxpoints: false,
+      }
+    );
+
+    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
+    plot_data_non_cached.push(
+      {
+        x:processName, y: norm_units(stats.energy_non_cached), name: processName,
+        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
+        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
+      }
+    );
+  }
+
+  var layout = {
+    title: 'CO<sub>2</sub> emission & energy consumption',
+    legend: {
+      x: 1.1
+    },
+    xaxis: {
+      title: 'Processes',
+    },
+    yaxis: {
+      title: 'CO2e emission (g)',
+      rangemode: 'tozero',
+    },
+    yaxis2: {
+      title: 'Energy consumption (Wh)',
+      rangemode: 'tozero',
+      gridcolor: 'rgba(0, 0, 0, 0)', // transparent grid lines
+      overlaying: 'y',
+      side: 'right',
+    },
+    boxmode: 'group',
+  };
+
+  Plotly.newPlot('co2e-total-plot', plot_data_total, layout);
+  Plotly.newPlot('co2e-non-cached-plot', plot_data_non_cached, layout);
+
+  //
+  // Table creation functions
+  //
+
+  /**
+   * Function to create the table of tasks
+   */
+  function make_tasks_table(){
+    // reset
+      if ( $.fn.dataTable.isDataTable( '#tasks_table' ) ) {
+        $('#tasks_table').DataTable().destroy();
+      }
+
+      // Column titles
+      var energyConsumptionTitle = 'energy consumption (mWh)'; // Default column title
+      var co2EmissionsTitle = 'CO₂e emissions (mg)';
+      if ($('#nf-table-humanreadable').val() == 'true') {
+        energyConsumptionTitle = 'energy consumption'; // Change the column title if the button is selected
+        co2EmissionsTitle = 'CO₂e emissions';
+      }
+
+      var table = $('#tasks_table').DataTable({
+        data: window.data.trace,
+        columns: [
+          { title: 'task_id', data: 'task_id' },
+          { title: 'process', data: 'process' },
+          { title: 'tag', data: 'tag' },
+          { title: 'status', data: 'status', render: function(data, type, row){
+              var s = {
+                COMPLETED: 'success',
+                CACHED: 'secondary',
+                ABORTED: 'danger',
+                FAILED: 'danger'
+              }
+              return '<span class="badge badge-'+s[data]+'">'+data+'</span>';
+            }
+          },
+          { title: 'hash', data: 'hash', render:  function(data, type, row){
+              var script = '';
+              var lines = data.split("\n");
+              var ws_re = /^(\s+)/g;
+              var flws_match = ws_re.exec(lines[1]);
+              if(flws_match == null){
+                script = data;
+              } else {
+                for(var j=0; j<lines.length; j++){
+                  script += lines[j].replace(new RegExp('^'+flws_match[1]), '').replace(/\s+$/,'') + "\n";
+                }
+              }
+              return '<code>'+script+'</code>';
+            }
+          },
+          { title: energyConsumptionTitle, data: 'energy', type: 'num', render: make_energy },
+          { title: co2EmissionsTitle, data: 'co2e', type: 'num', render: make_co2e },
+          { title: `${co2EmissionsTitle} (market)`, data: 'co2eMarket', type: 'num', render: make_co2e },
+          { title: 'carbon intensity', data: 'ci', type: 'num', render: make_carbon_intensity },
+          { title: 'allocated cpus', data: 'cpus', type: 'num' },
+          { title: '%cpu', data: 'cpuUsage', type: 'num', render: make_core_usage_factor },
+          { title: 'allocated memory', data: 'memory', type: 'num', render: make_memory },
+          { title: 'realtime', data: 'time', type: 'num', render: make_time },
+          { title: 'power draw (in W/core)', data: 'powerdrawCPU', type: 'num', render: make_power_draw_cpu },
+          { title: 'cpu model', data: 'cpu_model' },
+        ],
+        "deferRender": true,
+        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
+        "scrollX": true,
+        "colReorder": true,
+        "columnDefs": [
+          { className: "id", "targets": [ 0,1,2,3 ] },
+          { className: "meta", "targets": [ 4,7,8,9,10,11 ] },
+          { className: "metrics", "targets": [ 5,6 ] }
+        ],
+        "buttons": [
+          {
+            extend: 'colvisGroup',
+            text: 'Metrics',
+            show: [ '.id', '.metrics' ],
+            hide: [ '.meta' ],
+          },
+          {
+            extend: 'colvisGroup',
+            text: 'Metadata',
+            show: [ '.id', '.meta'],
+            hide: [ '.metrics' ],
+          },
+          {
+            extend: 'colvisGroup',
+            text: 'All',
+            show: ':hidden',
+          },
+        ]
+      });
+
+      // Insert column filter button group
+      table.buttons().container()
+        .prependTo( $('#tasks_table_filter') );
+
+      // Column filter button group onClick event to highlight active filter
+      $('.buttons-colvisGroup').click(function(){
+        var def = 'btn-secondary';
+        var sel = 'btn-primary';
+        $('.buttons-colvisGroup').removeClass(sel).addClass(def);
+        $(this).addClass(sel).removeClass(def);
+      });
+
+      // Default filter highlight
+      $(".buttons-colvisGroup:contains('All')").click();
+  }
+
+  // Executor for task table creation (on page load)
+  if( window.data.trace==null ) {
+      // Hide tasks table if too many tasks are present
+      $('#tasks-present-table').remove()
+  }
+  else {
+      $('#tasks-omitted-table').remove()
+      // Dropdown changed about raw / human readable values in table
+      $('#nf-table-humanreadable').change(function(){
+        make_tasks_table();
+      });
+      // Make the table on page load
+      make_tasks_table();
+  }
+
+  /**
+   * Function to create the table of options / configurations
+   */
+  function make_options_table(){
+    // reset
+    if ( $.fn.dataTable.isDataTable( '#options_table' ) ) {
+      $('#options_table').DataTable().destroy();
+    }
+
+    var table = $('#options_table').DataTable({
+      data: window.options,
+      columns: [
+          { title: "Option", data: "option" },
+          { title: "Value", data: "value" }
+        ],
+        "deferRender": true,
+        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
+    });
+  }
+
+  // Executor for options table creation (on page load)
+  make_options_table();
+});
+
+  // Nextflow report data
+  window.data = {"trace":[{"task_id":"5","hash":"1a\/3734fe","native_id":"1934991","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.759","start":"2025-10-17 13:11:26.821","complete":"2025-10-17 13:11:26.914","duration":"155ms","realtime":"24ms","%cpu":"43.2%","%mem":"0.0%","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"158.5 KB","wchar":"1.2 KB","syscr":"310","syscw":"21","read_bytes":"0","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/1a\/3734fe7cb746984e14db5325e1e2cf","script":"\n    py_fasta_validator \\\n        -f toxin-ref.fa \\\n        2> \"toxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to toxin-ref.error.log\"\n\n    if [ $(cat \"toxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"toxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"toxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"toxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.03085015425","co2e":"0.01480807404","co2eMarket":"-","time":"6.6667E-6","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"4","hash":"64\/bf2fea","native_id":"1935008","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.779","start":"2025-10-17 13:11:26.832","complete":"2025-10-17 13:11:26.930","duration":"151ms","realtime":"19ms","%cpu":"100.0%","%mem":"0.0%","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"158.5 KB","wchar":"1.2 KB","syscr":"310","syscw":"21","read_bytes":"116 KB","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/64\/bf2fea1ef78d0d849e20d5acbaa09b","script":"\n    py_fasta_validator \\\n        -f setoxin-ref.fa \\\n        2> \"seatoxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to seatoxin-ref.error.log\"\n\n    if [ $(cat \"seatoxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"seatoxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"seatoxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"seatoxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0487800665","co2e":"0.02341443192","co2eMarket":"-","time":"5.2778E-6","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"100.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"8","hash":"16\/eeacd9","native_id":"1935020","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.788","start":"2025-10-17 13:11:26.836","complete":"2025-10-17 13:11:26.969","duration":"181ms","realtime":"54ms","%cpu":"76.2%","%mem":"0.0%","rss":"3.3 MB","vmem":"11.8 MB","peak_rss":"3.3 MB","peak_vmem":"11.8 MB","rchar":"130.9 KB","wchar":"2.7 KB","syscr":"245","syscw":"17","read_bytes":"2.2 MB","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/16\/eeacd9ed5ba4f1b9e421d0c84f9756","script":"\n    clustalo \\\n        -i toxin-ref.fa \\\n        --guidetree-out toxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.10963125","co2e":"0.052623","co2eMarket":"-","time":"1.5E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"76.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"3","hash":"98\/b351d4","native_id":"1935048","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.801","start":"2025-10-17 13:11:26.839","complete":"2025-10-17 13:11:26.999","duration":"198ms","realtime":"13ms","%cpu":"21.6%","%mem":"0.0%","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"128.7 KB","wchar":"838 B","syscr":"245","syscw":"17","read_bytes":"0","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/98\/b351d445264b97ba38fbfee926d9fd","script":"\n    clustalo \\\n        -i setoxin-ref.fa \\\n        --guidetree-out seatoxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.01037288475","co2e":"0.00497898468","co2eMarket":"-","time":"3.6111E-6","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"21.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"6","hash":"61\/77c7ec","native_id":"1935385","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:26.932","start":"2025-10-17 13:11:26.977","complete":"2025-10-17 13:11:27.174","duration":"242ms","realtime":"197ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/61\/77c7ec3b6c330cf3849f0f1a0247aa","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > \"toxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.3142904385","co2e":"0.63085941048","co2eMarket":"-","time":"5.47222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","cpu_model":"-"}, {"task_id":"7","hash":"a2\/0aa64d","native_id":"1935429","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-27978155697a3671f3ef9aead4b5c823a02cc0b7:548df772fe13c0232a7eab1bc1deb98b495a05ab-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.954","start":"2025-10-17 13:11:26.980","complete":"2025-10-17 13:11:28.326","duration":"1.4s","realtime":"1.2s","%cpu":"77.3%","%mem":"0.1%","rss":"20.6 MB","vmem":"361.4 MB","peak_rss":"20.6 MB","peak_vmem":"361.5 MB","rchar":"11.3 MB","wchar":"891 B","syscr":"1618","syscw":"18","read_bytes":"37.8 MB","write_bytes":"16 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/a2\/0aa64d4b5c61ea0a7db15ed5960777","script":"\n    calc_seqstats.py toxin-ref         toxin-ref.fa         \"toxin-ref_seqstats.csv\"         \"toxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"93","inv_ctxt":"23","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.40028022675","co2e":"1.15213450884","co2eMarket":"-","time":"3.244444E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"77.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"2","hash":"fc\/25e69c","native_id":"1935468","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:26.980","start":"2025-10-17 13:11:27.001","complete":"2025-10-17 13:11:27.189","duration":"209ms","realtime":"188ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/fc\/25e69c7b3302e5effdb816ebce706a","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in setoxin-ref.fa         -output=sim_idscore         > \"seatoxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.2542466885","co2e":"0.60203841048","co2eMarket":"-","time":"5.22222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","cpu_model":"-"}, {"task_id":"1","hash":"25\/4b9570","native_id":"1935539","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-27978155697a3671f3ef9aead4b5c823a02cc0b7:548df772fe13c0232a7eab1bc1deb98b495a05ab-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:27.038","start":"2025-10-17 13:11:27.210","complete":"2025-10-17 13:11:28.226","duration":"1.2s","realtime":"1s","%cpu":"85.2%","%mem":"0.1%","rss":"42 MB","vmem":"385.8 MB","peak_rss":"42 MB","peak_vmem":"385.8 MB","rchar":"11.3 MB","wchar":"632 B","syscr":"1618","syscw":"18","read_bytes":"29 MB","write_bytes":"16 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/25\/4b9570a14b102c5bc2b9c48f35ebc8","script":"\n    calc_seqstats.py seatoxin-ref         setoxin-ref.fa         \"seatoxin-ref_seqstats.csv\"         \"seatoxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"32","inv_ctxt":"40","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.246732976","co2e":"1.07843182848","co2eMarket":"-","time":"2.794444E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"85.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"9","hash":"c6\/a8f9fe","native_id":"1935639","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"toxin-ref tree: CLUSTALO","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:27.228","start":"2025-10-17 13:11:27.314","complete":"2025-10-17 13:11:27.528","duration":"300ms","realtime":"214ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/c6\/a8f9fe0db551dd7400542c3a5293b4","script":"\n    famsa -gt import toxin-ref_CLUSTALO-args-default.dnd \\\n         \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_CLUSTALO-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.427705877","co2e":"0.68529882096","co2eMarket":"-","time":"5.94444E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)","cpu_model":"-"}, {"task_id":"10","hash":"0d\/2dee58","native_id":"1935670","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"seatoxin-ref tree: CLUSTALO","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:27.309","start":"2025-10-17 13:11:27.316","complete":"2025-10-17 13:11:27.597","duration":"288ms","realtime":"281ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/0d\/2dee580c69f9f948c93296909259ad","script":"\n    famsa -gt import seatoxin-ref_CLUSTALO-args-default.dnd \\\n         \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_CLUSTALO-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.874700373","co2e":"0.89985617904","co2eMarket":"-","time":"7.80556E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)","cpu_model":"-"}, {"task_id":"12","hash":"0e\/918212","native_id":"1935777","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN","module":"-","container":"community.wave.seqera.io\/library\/t-coffee_tmalign_pigz:be7dac2ae6aba380","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:27.558","start":"2025-10-17 13:11:27.599","complete":"2025-10-17 13:11:27.756","duration":"198ms","realtime":"157ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/0e\/9182126c1bc81b5e270fa1733618ae","script":"\n    export TEMP=\'.\/\'\n    export TMP_4_TCOFFEE=\".\/\"\n    export HOME=\".\/\"\n    t_coffee -seq toxin-ref.fa                           -output fasta_aln         -thread 2         -outfile toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln         \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.04742959425","co2e":"0.50276620524","co2eMarket":"-","time":"4.36111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"-"}],"summary":{"CLUSTALO_GUIDETREE":{"co2e":{"all":[0.00497898468,0.052623],"total":0.05760198468,"mean":0.02880099234,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.00497898468,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.016889988510000002,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.02880099234,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.04071199617,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.052623},"energy":{"all":[0.01037288475,0.10963125],"total":0.12000413475,"mean":0.060002067375,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.01037288475,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.0351874760625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.060002067375,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.08481665868749999,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.10963125},"co2e_non_cached":{"all":[0.00497898468,0.052623],"total":0.05760198468,"mean":0.02880099234,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.00497898468,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.016889988510000002,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.02880099234,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.04071199617,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.052623},"energy_non_cached":{"all":[0.01037288475,0.10963125],"total":0.12000413475,"mean":0.060002067375,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.01037288475,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.0351874760625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.060002067375,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.08481665868749999,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.10963125},"co2e_market":{},"energy_market":{"all":[0.01037288475,0.10963125],"total":0.12000413475,"mean":0.060002067375,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.01037288475,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.0351874760625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.060002067375,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.08481665868749999,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.10963125}},"TCOFFEE_SEQREFORMAT_SIM":{"co2e":{"all":[0.60203841048,0.63085941048],"total":1.23289782096,"mean":0.61644891048,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","min":0.60203841048,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","q1":0.60924366048,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","q2":0.61644891048,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","q3":0.62365416048,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","max":0.63085941048},"energy":{"all":[1.2542466885,1.3142904385],"total":2.568537127,"mean":1.2842685635,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM 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new file mode 100644
index 00000000..3c6d6fb5
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt
@@ -0,0 +1,29 @@
+Total CO2e footprint measures of this workflow run (including cached tasks):
+  CO2e emissions: 5.65 mg
+  Energy consumption: 11.77 mWh
+  CO2e emissions (market): -
+
+Which equals:
+  - 3.23E-5 km travelled by car
+  - It takes one tree 16.2s to sequester the equivalent amount of CO2 from the atmosphere
+  - 1.13E-5 % of a flight from Paris to London
+
+The calculation of these values is based on the carbon footprint computation method developed in the Green Algorithms project:
+  Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
+  Adv. Sci. 2021, 2100707. https://doi.org/10.1002/advs.202100707
+
+nf-co2footprint plugin version: 1.0.0
+
+nf-co2footprint options:
+  ci: 480.0
+  ciMarket: null
+  ignoreCpuModel: false
+  location: null
+  machineType: null
+  powerdrawCpuDefault: null
+  powerdrawMem: 0.3725
+  pue: 1.0
+  customCpuTdpFile: null
+  reportFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
+  summaryFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt
+  traceFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
new file mode 100644
index 00000000..77aaf161
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
@@ -0,0 +1,12 @@
+task_id	status	name	energy_consumption	CO2e	CO2e_market	carbon_intensity	%cpu	memory	realtime	cpus	powerdraw_cpu	cpu_model
+6	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	1.31 mWh	630.86 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	197ms	2	11.5 W	null
+3	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	10.37 uWh	4.98 ug	null	480.0 gCO₂e/kWh	21.6%	3.0 GB	13ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+2	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	1.25 mWh	602.04 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	188ms	2	11.5 W	null
+8	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	109.63 uWh	52.62 ug	null	480.0 gCO₂e/kWh	76.2%	3.0 GB	54ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+9	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)	1.43 mWh	685.3 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	214ms	2	11.5 W	null
+5	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	30.85 uWh	14.81 ug	null	480.0 gCO₂e/kWh	43.2%	3.0 GB	24ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+10	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)	1.87 mWh	899.86 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	281ms	2	11.5 W	null
+4	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	48.78 uWh	23.41 ug	null	480.0 gCO₂e/kWh	100.0%	3.0 GB	19ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+12	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	1.05 mWh	502.77 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	157ms	2	11.5 W	null
+1	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	2.25 mWh	1.08 mg	null	480.0 gCO₂e/kWh	85.2%	3.0 GB	1s 6ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
+7	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	2.4 mWh	1.15 mg	null	480.0 gCO₂e/kWh	77.3%	3.0 GB	1s 168ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
new file mode 100644
index 00000000..f2e7f10c
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
@@ -0,0 +1,7 @@
+CLUSTALO_GUIDETREE:
+  clustalo: 1.2.4
+FASTAVALIDATOR:
+  py_fasta_validator: null
+Workflow:
+    nf-core/multiplesequencealign: v1.2.0dev
+    Nextflow: 25.04.6
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json
new file mode 100644
index 00000000..1a0fed2a
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json
@@ -0,0 +1,57 @@
+{
+    "input": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv",
+    "seqs": null,
+    "tools": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv",
+    "templates_suffix": ".pdb",
+    "pdbs_dir": null,
+    "tree": null,
+    "args_tree": null,
+    "aligner": null,
+    "args_aligner": null,
+    "skip_validation": false,
+    "skip_preprocessing": false,
+    "skip_pdbconversion": false,
+    "build_consensus": true,
+    "skip_stats": false,
+    "calc_sim": true,
+    "calc_seq_stats": true,
+    "extract_plddt": true,
+    "skip_eval": false,
+    "calc_sp": true,
+    "calc_tc": true,
+    "calc_irmsd": true,
+    "calc_gaps": true,
+    "calc_tcs": true,
+    "skip_compression": false,
+    "multiqc_config": null,
+    "multiqc_title": null,
+    "multiqc_logo": null,
+    "max_multiqc_email_size": "25.MB",
+    "multiqc_methods_description": null,
+    "skip_multiqc": false,
+    "outdir": "/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output",
+    "publish_dir_mode": "copy",
+    "email": null,
+    "email_on_fail": null,
+    "plaintext_email": false,
+    "monochrome_logs": false,
+    "hook_url": null,
+    "help": false,
+    "help_full": false,
+    "show_hidden": false,
+    "version": false,
+    "pipelines_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign",
+    "trace_report_suffix": "2025-10-17_13-11-11",
+    "config_profile_name": "Test profile",
+    "config_profile_description": "Minimal test dataset to check pipeline function",
+    "shiny_app": "/home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app",
+    "skip_shiny": false,
+    "skip_visualisation": false,
+    "custom_config_version": "master",
+    "custom_config_base": "https://raw.githubusercontent.com/nf-core/configs/master",
+    "config_profile_contact": null,
+    "config_profile_url": null,
+    "validate_params": true,
+    "use_gpu": false,
+    "modules_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/"
+}
\ No newline at end of file
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
new file mode 100644
index 00000000..24c4672f
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
@@ -0,0 +1,21 @@
+id,seq_id,sequence length
+toxin-ref,1kbt,60
+toxin-ref,2crt,60
+toxin-ref,2cdx,60
+toxin-ref,1cdta,60
+toxin-ref,1tgxa,60
+toxin-ref,1kxia,62
+toxin-ref,1tfs,60
+toxin-ref,1drs,59
+toxin-ref,1txb,73
+toxin-ref,2ctx,71
+toxin-ref,1ntn,72
+toxin-ref,1lsi,66
+toxin-ref,2abxa,74
+toxin-ref,2nbta,66
+toxin-ref,1nean,61
+toxin-ref,1nor,61
+toxin-ref,1cod,62
+toxin-ref,1nxb,62
+toxin-ref,1ntx,60
+toxin-ref,1fas,61
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
new file mode 100644
index 00000000..3c9873e2
--- /dev/null
+++ b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
@@ -0,0 +1,78 @@
+(
+(
+1fas:0.347519
+,
+(
+1drs:0.329979
+,
+(
+1tfs:0.282813
+,
+(
+1ntx:0.21875
+,
+(
+1nxb:0.190838
+,
+(
+1cod:0.135246
+,
+(
+1nean:0.0655738
+,
+1nor:0.0655738
+):0.0696721
+):0.0555923
+):0.0279118
+):0.0640625
+):0.0471663
+):0.0175399
+):0.051554
+,
+(
+(
+1kxia:0.225521
+,
+(
+1tgxa:0.138542
+,
+(
+1cdta:0.108333
+,
+(
+2cdx:0.0833333
+,
+(
+1kbt:0.0583333
+,
+2crt:0.0583333
+):0.025
+):0.025
+):0.0302083
+):0.0869792
+):0.146659
+,
+(
+2nbta:0.295455
+,
+(
+2abxa:0.235201
+,
+(
+1lsi:0.234848
+,
+(
+1ntn:0.192488
+,
+(
+1txb:0.15493
+,
+2ctx:0.15493
+):0.0375587
+):0.0423602
+):0.000352517
+):0.0602536
+):0.0767252
+):0.0268929
+)
+;
diff --git a/modules.json b/modules.json
index 7e3155c4..f8de2eed 100644
--- a/modules.json
+++ b/modules.json
@@ -7,85 +7,85 @@
                 "nf-core": {
                     "clustalo/align": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "clustalo/guidetree": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "csvtk/concat": {
                         "branch": "master",
-                        "git_sha": "fa92936611247ca647ddee970f94d83f1bcb0ffe",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "csvtk/join": {
                         "branch": "master",
-                        "git_sha": "fa92936611247ca647ddee970f94d83f1bcb0ffe",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/csvtk/join/csvtk-join.diff"
                     },
                     "famsa/align": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "5c07517e7b526d4c3058fa88009e765b130ea5e8",
                         "installed_by": ["modules"]
                     },
                     "famsa/guidetree": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "fastavalidator": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "foldmason/createdb": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "foldmason/easymsa": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "7fb8d8ffc44ee01282e20eb8fb1bba8061e0cf6e",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/foldmason/easymsa/foldmason-easymsa.diff"
                     },
                     "foldmason/msa2lddtreport": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "kalign/align": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/kalign/align/kalign-align.diff"
                     },
                     "learnmsa/align": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "mafft/align": {
                         "branch": "master",
-                        "git_sha": "fa92936611247ca647ddee970f94d83f1bcb0ffe",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "mafft/guidetree": {
                         "branch": "master",
-                        "git_sha": "fa92936611247ca647ddee970f94d83f1bcb0ffe",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "magus/align": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "mtmalign/align": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "7fb8d8ffc44ee01282e20eb8fb1bba8061e0cf6e",
                         "installed_by": ["modules"]
                     },
                     "multiqc": {
@@ -95,69 +95,68 @@
                     },
                     "muscle5/super5": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "pigz/compress": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "pigz/uncompress": {
                         "branch": "master",
-                        "git_sha": "db63f85c5ad0cea2a5e21b79a3851d0dabe9d351",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/align": {
                         "branch": "master",
-                        "git_sha": "a380f1dade8d24fea92176d0ffaa5ab6235b8e15",
+                        "git_sha": "71e0a0535a95c5f1c92b252ed6a316fd87b93b7e",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/alncompare": {
                         "branch": "master",
-                        "git_sha": "37c4b509f55c63017f26f598cafd493d33ef8118",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/tcoffee/alncompare/tcoffee-alncompare.diff"
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
+                        "installed_by": ["modules"]
                     },
                     "tcoffee/consensus": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/extractfrompdb": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/tcoffee/extractfrompdb/tcoffee-extractfrompdb.diff"
                     },
                     "tcoffee/irmsd": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/regressive": {
                         "branch": "master",
-                        "git_sha": "6c2b47b2e26cf091cfce73658709823675833978",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/seqreformat": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "tcoffee/tcs": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     },
                     "untar": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "00ee87ebb541af0008596400ce6d5f66d79d5408",
                         "installed_by": ["modules"]
                     },
                     "upp/align": {
                         "branch": "master",
-                        "git_sha": "d7e273eec27a372c716565c07ea05cee8b06bd3a",
+                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                         "installed_by": ["modules"]
                     }
                 }
diff --git a/modules/nf-core/clustalo/align/meta.yml b/modules/nf-core/clustalo/align/meta.yml
index cd596471..bbc6ddd4 100644
--- a/modules/nf-core/clustalo/align/meta.yml
+++ b/modules/nf-core/clustalo/align/meta.yml
@@ -29,6 +29,9 @@ input:
         type: file
         description: Input sequences in FASTA format
         pattern: "*.{fa,fasta,faa,fna}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta2:
         type: map
         description: |
@@ -38,30 +41,46 @@ input:
         type: file
         description: Input guide tree in Newick format
         pattern: "*.{dnd}"
-  - - hmm_in:
-        type: file
-        description: HMM file for profile alignment
-        pattern: "*.hmm"
-  - - hmm_batch:
-        type: file
-        description: specify HMMs for individual sequences
-        pattern: "*"
-  - - profile1:
-        type: file
-        description: Pre-aligned multiple sequence file 1
-        pattern: "*.{alnfaa,faa,fa,fasta}"
-  - - profile2:
-        type: file
-        description: Pre-aligned multiple sequence file 2
-        pattern: "*.{alnfaa,faa,fa,fasta}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
+  - hmm_in:
+      type: file
+      description: HMM file for profile alignment
+      pattern: "*.hmm"
+      ontologies:
+        - edam: http://edamontology.org/format_1391 # HMMER-ALN
+  - hmm_batch:
+      type: file
+      description: specify HMMs for individual sequences
+      pattern: "*.hmm"
+      ontologies:
+        - edam: http://edamontology.org/format_1391 # HMMER-ALN
+  - profile1:
+      type: file
+      description: Pre-aligned multiple sequence file 1
+      pattern: "*.{alnfaa,faa,fa,fasta}"
+      ontologies:
+        - edam: http://edamontology.org/format_1929 # FASTA
+        - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+        - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+        - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  - profile2:
+      type: file
+      description: Pre-aligned multiple sequence file 2
+      pattern: "*.{alnfaa,faa,fa,fasta}"
+      ontologies:
+        - edam: http://edamontology.org/format_1929 # FASTA
+        - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+        - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+        - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -70,11 +89,17 @@ output:
           type: file
           description: Alignment file, in gzipped fasta format
           pattern: "*.aln{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@joseespinosa"
diff --git a/modules/nf-core/clustalo/align/tests/tags.yml b/modules/nf-core/clustalo/align/tests/tags.yml
deleted file mode 100644
index 58bd2776..00000000
--- a/modules/nf-core/clustalo/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-clustalo/align:
-  - "modules/nf-core/clustalo/align/**"
diff --git a/modules/nf-core/clustalo/guidetree/meta.yml b/modules/nf-core/clustalo/guidetree/meta.yml
index e006bad7..7db01d39 100644
--- a/modules/nf-core/clustalo/guidetree/meta.yml
+++ b/modules/nf-core/clustalo/guidetree/meta.yml
@@ -25,9 +25,12 @@ input:
         type: file
         description: Input sequences in FASTA format
         pattern: "*.{fa,fasta}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
 output:
-  - tree:
-      - meta:
+  tree:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -36,11 +39,15 @@ output:
           type: file
           description: Guide tree file in Newick format
           pattern: "*.{dnd}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/clustalo/guidetree/tests/tags.yml b/modules/nf-core/clustalo/guidetree/tests/tags.yml
deleted file mode 100644
index 9b07c866..00000000
--- a/modules/nf-core/clustalo/guidetree/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-clustalo/guidetree:
-  - "modules/nf-core/clustalo/guidetree/**"
diff --git a/modules/nf-core/csvtk/concat/meta.yml b/modules/nf-core/csvtk/concat/meta.yml
index 27ffc1ca..37497b31 100644
--- a/modules/nf-core/csvtk/concat/meta.yml
+++ b/modules/nf-core/csvtk/concat/meta.yml
@@ -22,17 +22,20 @@ input:
         type: file
         description: CSV/TSV formatted files
         pattern: "*.{csv,tsv}"
-  - - in_format:
-        type: string
-        description: Input format (csv, tab, or a delimiting character)
-        pattern: "*"
-  - - out_format:
-        type: string
-        description: Output format (csv, tab, or a delimiting character)
-        pattern: "*"
+        ontologies:
+          - edam: http://edamontology.org/format_3752 # CSV
+          - edam: http://edamontology.org/format_3475 # TSV
+  - in_format:
+      type: string
+      description: Input format (csv, tab, or a delimiting character)
+      pattern: "*"
+  - out_format:
+      type: string
+      description: Output format (csv, tab, or a delimiting character)
+      pattern: "*"
 output:
-  - csv:
-      - meta:
+  csv:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -41,11 +44,16 @@ output:
           type: file
           description: Concatenated CSV/TSV file
           pattern: "*.{csv,tsv}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "version.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_3752 # CSV
+            - edam: http://edamontology.org/format_3475 # TSV
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "version.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@rpetit3"
 maintainers:
diff --git a/modules/nf-core/csvtk/concat/tests/tags.yml b/modules/nf-core/csvtk/concat/tests/tags.yml
deleted file mode 100644
index 0d10e7c9..00000000
--- a/modules/nf-core/csvtk/concat/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-csvtk/concat:
-  - "modules/nf-core/csvtk/concat/**"
diff --git a/modules/nf-core/csvtk/join/csvtk-join.diff b/modules/nf-core/csvtk/join/csvtk-join.diff
index 1c8ec1a5..1d85ab67 100644
--- a/modules/nf-core/csvtk/join/csvtk-join.diff
+++ b/modules/nf-core/csvtk/join/csvtk-join.diff
@@ -1,5 +1,4 @@
 Changes in component 'nf-core/csvtk/join'
-'modules/nf-core/csvtk/join/environment.yml' is unchanged
 Changes in 'csvtk/join/main.nf':
 --- modules/nf-core/csvtk/join/main.nf
 +++ modules/nf-core/csvtk/join/main.nf
@@ -24,8 +23,8 @@ Changes in 'csvtk/join/main.nf':
      "${task.process}":
 
 'modules/nf-core/csvtk/join/meta.yml' is unchanged
-'modules/nf-core/csvtk/join/tests/main.nf.test' is unchanged
+'modules/nf-core/csvtk/join/environment.yml' is unchanged
 'modules/nf-core/csvtk/join/tests/main.nf.test.snap' is unchanged
 'modules/nf-core/csvtk/join/tests/nextflow.config' is unchanged
-'modules/nf-core/csvtk/join/tests/tags.yml' is unchanged
+'modules/nf-core/csvtk/join/tests/main.nf.test' is unchanged
 ************************************************************
diff --git a/modules/nf-core/csvtk/join/meta.yml b/modules/nf-core/csvtk/join/meta.yml
index d8671b17..ca86aca1 100644
--- a/modules/nf-core/csvtk/join/meta.yml
+++ b/modules/nf-core/csvtk/join/meta.yml
@@ -23,9 +23,12 @@ input:
         type: file
         description: CSV/TSV formatted files
         pattern: "*.{csv,tsv}"
+        ontologies:
+          - edam: http://edamontology.org/format_3752 # CSV
+          - edam: http://edamontology.org/format_3475 # TSV
 output:
-  - csv:
-      - meta:
+  csv:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -34,11 +37,16 @@ output:
           type: file
           description: Joined CSV/TSV file
           pattern: "*.{csv,tsv}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "version.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_3752 # CSV
+            - edam: http://edamontology.org/format_3475 # TSV
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "version.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@anoronh4"
 maintainers:
diff --git a/modules/nf-core/csvtk/join/tests/tags.yml b/modules/nf-core/csvtk/join/tests/tags.yml
deleted file mode 100644
index 6c3a0fa6..00000000
--- a/modules/nf-core/csvtk/join/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-csvtk/join:
-  - "modules/nf-core/csvtk/join/**"
diff --git a/modules/nf-core/famsa/align/environment.yml b/modules/nf-core/famsa/align/environment.yml
index 7553f17d..a5b58505 100644
--- a/modules/nf-core/famsa/align/environment.yml
+++ b/modules/nf-core/famsa/align/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::famsa=2.2.2
+  - bioconda::famsa=2.4.1
diff --git a/modules/nf-core/famsa/align/main.nf b/modules/nf-core/famsa/align/main.nf
index 096d8ff3..65f8c9f4 100644
--- a/modules/nf-core/famsa/align/main.nf
+++ b/modules/nf-core/famsa/align/main.nf
@@ -6,8 +6,8 @@ process FAMSA_ALIGN {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/famsa:2.2.2--h9f5acd7_0':
-        'biocontainers/famsa:2.2.2--h9f5acd7_0' }"
+        'https://depot.galaxyproject.org/singularity/famsa:2.4.1--h9ee0642_0':
+        'biocontainers/famsa:2.4.1--h9ee0642_0' }"
 
     input:
     tuple val(meta) , path(fasta)
diff --git a/modules/nf-core/famsa/align/meta.yml b/modules/nf-core/famsa/align/meta.yml
index c12a99dc..0a17b79d 100644
--- a/modules/nf-core/famsa/align/meta.yml
+++ b/modules/nf-core/famsa/align/meta.yml
@@ -24,6 +24,9 @@ input:
         type: file
         description: Input sequences in FASTA format
         pattern: "*.{fa,fasta}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta2:
         type: map
         description: |
@@ -33,14 +36,16 @@ input:
         type: file
         description: Input guide tree in Newick format
         pattern: "*.{dnd}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is handled
-          by passing '-gz' to FAMSA along with any other options specified in task.ext.args.
+        ontologies:
+          - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is handled by passing
+        '-gz' to FAMSA along with any other options specified in task.ext.args.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -50,11 +55,17 @@ output:
           description: Alignment file, in FASTA format. May be gzipped or uncompressed,
             depending on if compress is set to true or false
           pattern: "*.aln{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/famsa/align/tests/main.nf.test b/modules/nf-core/famsa/align/tests/main.nf.test
index 8e91c308..a30e852f 100644
--- a/modules/nf-core/famsa/align/tests/main.nf.test
+++ b/modules/nf-core/famsa/align/tests/main.nf.test
@@ -15,7 +15,7 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = [ [ id:'test' ], // meta map
+                input[0] = [ [ id:'test_uncompressed' ], // meta map
                              file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fasta/contigs.fasta', checkIfExists: true)
                            ]
                 input[1] = [[:],[]]
@@ -27,8 +27,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out.alignment).match("alignment_uncompressed")},
-                { assert snapshot(process.out.versions).match("versions0") }
+                { assert snapshot(process.out).match() }
             )
         }
 
@@ -39,7 +38,7 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = [ [ id:'test' ], // meta map
+                input[0] = [ [ id:'test_compressed' ], // meta map
                              file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fasta/contigs.fasta', checkIfExists: true)
                            ]
                 input[1] = [[:],[]]
@@ -51,8 +50,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out.alignment).match("alignment_compressed")},
-                { assert snapshot(process.out.versions).match("versions1") }
+                { assert snapshot(process.out).match() }
             )
         }
 
@@ -65,7 +63,7 @@ nextflow_process {
                 script "../../guidetree/main.nf"
                 process {
                     """
-                    input[0] = [ [ id:'test' ], // meta map
+                    input[0] = [ [ id:'test_guide_tree' ], // meta map
                                  file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fasta/contigs.fasta', checkIfExists: true)
                                ]
                     """
@@ -76,7 +74,7 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = [ [ id:'test' ], // meta map
+                input[0] = [ [ id:'test_guide_tree' ], // meta map
                              file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fasta/contigs.fasta', checkIfExists: true)
                            ]
                 input[1] = FAMSA_GUIDETREE.out.tree.collect{ meta, tree -> tree }.map{ tree -> [[ id: 'test_summary'], tree]}
@@ -88,9 +86,36 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out.alignment).match("with_guide_tree_alignment")},
-                { assert snapshot(process.out.versions).match("with_guide_tree_versions") }
+                { assert snapshot(process.out).match() }
             )
         }
     }
-}
\ No newline at end of file
+
+    test("sarscov2 - fasta - uncompressed - stub") {
+
+        options "-stub"
+
+        when {
+            process {
+                """
+                input[0] = [ [ id:'test_stub' ],
+                             file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fasta/contigs.fasta', checkIfExists: true)
+                           ]
+                input[1] = [[:],[]]
+                input[2] = false
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success},
+                { assert snapshot(
+                    process.out,
+                    process.out.versions.collect{ path(it).yaml }
+                ).match() }
+            )
+        }
+
+    }
+}
diff --git a/modules/nf-core/famsa/align/tests/main.nf.test.snap b/modules/nf-core/famsa/align/tests/main.nf.test.snap
index 95bbbf17..c4c380ee 100644
--- a/modules/nf-core/famsa/align/tests/main.nf.test.snap
+++ b/modules/nf-core/famsa/align/tests/main.nf.test.snap
@@ -1,57 +1,141 @@
 {
-    "alignment_uncompressed": {
+    "sarscov2 - fasta - compressed": {
         "content": [
-            [
-                [
-                    {
-                        "id": "test"
-                    },
-                    "test.aln:md5,7cf7375f2ba360814ea978731838b972"
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test_compressed"
+                        },
+                        "test_compressed.aln.gz:md5,561e958b5073a0adc976cea90173fc13"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
+                ],
+                "alignment": [
+                    [
+                        {
+                            "id": "test_compressed"
+                        },
+                        "test_compressed.aln.gz:md5,561e958b5073a0adc976cea90173fc13"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
                 ]
-            ]
+            }
         ],
-        "timestamp": "2024-02-09T19:08:43.577982822"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "25.04.7"
+        },
+        "timestamp": "2025-09-26T09:10:17.847094788"
     },
-    "versions": {
+    "sarscov2 - fasta - uncompressed - stub": {
         "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test_stub"
+                        },
+                        "test_stub.aln:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
+                ],
+                "alignment": [
+                    [
+                        {
+                            "id": "test_stub"
+                        },
+                        "test_stub.aln:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
+                ]
+            },
             [
-                "versions.yml:md5,7d9e0a8c263fa6d9017075fe88c9e9dc"
+                {
+                    "FAMSA_ALIGN": {
+                        "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                    }
+                }
             ]
         ],
-        "timestamp": "2024-02-09T19:08:43.670136799"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "25.04.7"
+        },
+        "timestamp": "2025-09-26T09:11:23.307389575"
     },
-    "with_guide_tree_alignment": {
+    "sarscov2 - fasta - uncompressed": {
         "content": [
-            [
-                [
-                    {
-                        "id": "test"
-                    },
-                    "test.aln.gz:md5,7cf7375f2ba360814ea978731838b972"
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test_uncompressed"
+                        },
+                        "test_uncompressed.aln:md5,561e958b5073a0adc976cea90173fc13"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
+                ],
+                "alignment": [
+                    [
+                        {
+                            "id": "test_uncompressed"
+                        },
+                        "test_uncompressed.aln:md5,561e958b5073a0adc976cea90173fc13"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
                 ]
-            ]
+            }
         ],
-        "timestamp": "2024-02-09T19:10:05.167368314"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "25.04.7"
+        },
+        "timestamp": "2025-09-26T09:09:24.027953988"
     },
-    "alignment_compressed": {
+    "sarscov2 - fasta - guide_tree": {
         "content": [
-            [
-                [
-                    {
-                        "id": "test"
-                    },
-                    "test.aln.gz:md5,7cf7375f2ba360814ea978731838b972"
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test_guide_tree"
+                        },
+                        "test_guide_tree.aln.gz:md5,561e958b5073a0adc976cea90173fc13"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
+                ],
+                "alignment": [
+                    [
+                        {
+                            "id": "test_guide_tree"
+                        },
+                        "test_guide_tree.aln.gz:md5,561e958b5073a0adc976cea90173fc13"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,526b2fe664fead3d5fa39e0bfc9e0b36"
                 ]
-            ]
-        ],
-        "timestamp": "2024-02-09T19:09:25.819156831"
-    },
-    "with_guide_tree_versions": {
-        "content": [
-            [
-                "versions.yml:md5,7d9e0a8c263fa6d9017075fe88c9e9dc"
-            ]
+            }
         ],
-        "timestamp": "2024-02-09T19:10:05.231995851"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "25.04.7"
+        },
+        "timestamp": "2025-09-26T09:11:14.414433399"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/famsa/align/tests/tags.yml b/modules/nf-core/famsa/align/tests/tags.yml
deleted file mode 100644
index d010f3b7..00000000
--- a/modules/nf-core/famsa/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-famsa/align:
-  - "modules/nf-core/famsa/align/**"
diff --git a/modules/nf-core/famsa/guidetree/meta.yml b/modules/nf-core/famsa/guidetree/meta.yml
index a7b1454f..e6028c3a 100644
--- a/modules/nf-core/famsa/guidetree/meta.yml
+++ b/modules/nf-core/famsa/guidetree/meta.yml
@@ -24,9 +24,12 @@ input:
         type: file
         description: Input sequences in FASTA format
         pattern: "*.{fa,fasta}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
 output:
-  - tree:
-      - meta:
+  tree:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -35,11 +38,15 @@ output:
           type: file
           description: Guide tree file in Newick format
           pattern: "*.{dnd}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/famsa/guidetree/tests/tags.yml b/modules/nf-core/famsa/guidetree/tests/tags.yml
deleted file mode 100644
index a81a270e..00000000
--- a/modules/nf-core/famsa/guidetree/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-famsa/guidetree:
-  - "modules/nf-core/famsa/guidetree/**"
diff --git a/modules/nf-core/fastavalidator/meta.yml b/modules/nf-core/fastavalidator/meta.yml
index 94198e62..f35d6371 100644
--- a/modules/nf-core/fastavalidator/meta.yml
+++ b/modules/nf-core/fastavalidator/meta.yml
@@ -29,9 +29,10 @@ input:
         type: file
         description: Input fasta file
         pattern: "*.fasta"
+        ontologies: []
 output:
-  - success_log:
-      - meta:
+  success_log:
+    - - meta:
           type: map
           description: |
             Groovy Map containing file information
@@ -40,8 +41,9 @@ output:
           type: file
           description: Log file for successful validation
           pattern: "*.success.log"
-  - error_log:
-      - meta:
+          ontologies: []
+  error_log:
+    - - meta:
           type: map
           description: |
             Groovy Map containing file information
@@ -50,11 +52,14 @@ output:
           type: file
           description: Log file for failed validation
           pattern: "*.error.log"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@gallvp"
 maintainers:
diff --git a/modules/nf-core/fastavalidator/tests/tags.yml b/modules/nf-core/fastavalidator/tests/tags.yml
deleted file mode 100644
index c3c77576..00000000
--- a/modules/nf-core/fastavalidator/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-fastavalidator:
-  - "modules/nf-core/fastavalidator/**"
diff --git a/modules/nf-core/foldmason/createdb/meta.yml b/modules/nf-core/foldmason/createdb/meta.yml
index fd47efe2..311b82a2 100644
--- a/modules/nf-core/foldmason/createdb/meta.yml
+++ b/modules/nf-core/foldmason/createdb/meta.yml
@@ -26,22 +26,26 @@ input:
         description: Input protein structures in `PDB` or `mmCIF` format.
         pattern: "*.{pdb,mmcif}"
 
+        ontologies: []
 output:
-  - db:
-      - meta:
+  db:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
             e.g. `[ id:'sample1', single_end:false ]`
-      - "${prefix}*":
+      - ${prefix}*:
           type: file
           description: All database files created by Foldmason
           pattern: "*"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
 maintainers:
diff --git a/modules/nf-core/foldmason/easymsa/foldmason-easymsa.diff b/modules/nf-core/foldmason/easymsa/foldmason-easymsa.diff
index 1d43528e..dd7f27de 100644
--- a/modules/nf-core/foldmason/easymsa/foldmason-easymsa.diff
+++ b/modules/nf-core/foldmason/easymsa/foldmason-easymsa.diff
@@ -1,5 +1,4 @@
 Changes in component 'nf-core/foldmason/easymsa'
-'modules/nf-core/foldmason/easymsa/environment.yml' is unchanged
 Changes in 'foldmason/easymsa/main.nf':
 --- modules/nf-core/foldmason/easymsa/main.nf
 +++ modules/nf-core/foldmason/easymsa/main.nf
@@ -38,7 +37,7 @@ Changes in 'foldmason/easymsa/main.nf':
 Changes in 'foldmason/easymsa/meta.yml':
 --- modules/nf-core/foldmason/easymsa/meta.yml
 +++ modules/nf-core/foldmason/easymsa/meta.yml
-@@ -58,7 +58,7 @@
+@@ -68,7 +68,7 @@
            description: |
              Groovy Map containing sample information
              e.g. `[ id:'sample1', single_end:false ]`
@@ -48,7 +47,7 @@ Changes in 'foldmason/easymsa/meta.yml':
            description: Fasta file containing the multiple sequence alignment with Amino
              Acid alphabet
 
-'modules/nf-core/foldmason/easymsa/tests/main.nf.test' is unchanged
+'modules/nf-core/foldmason/easymsa/environment.yml' is unchanged
 'modules/nf-core/foldmason/easymsa/tests/main.nf.test.snap' is unchanged
-'modules/nf-core/foldmason/easymsa/tests/tags.yml' is unchanged
+'modules/nf-core/foldmason/easymsa/tests/main.nf.test' is unchanged
 ************************************************************
diff --git a/modules/nf-core/foldmason/easymsa/meta.yml b/modules/nf-core/foldmason/easymsa/meta.yml
index 90322559..4ded7b6a 100644
--- a/modules/nf-core/foldmason/easymsa/meta.yml
+++ b/modules/nf-core/foldmason/easymsa/meta.yml
@@ -26,6 +26,9 @@ input:
         type: file
         description: Input protein structures in PDB format.
         pattern: "*.{pdb,mmcif}"
+        ontologies:
+          - edam: http://edamontology.org/format_1476 # PDB
+          - edam: http://edamontology.org/format_1477 # mmCIF
   - - meta2:
         type: map
         description: |
@@ -35,14 +38,17 @@ input:
         type: file
         description: Input guide tree in Newick format.
         pattern: "*.{dnd,nwk}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
+          - edam: http://edamontology.org/format_1910 # NEWICK
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - msa_3di:
-      - meta:
+  msa_3di:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -52,8 +58,12 @@ output:
           description: Fasta file containing the multiple sequence alignment with 3Di
             alphabet
           pattern: "*.{fa}"
-  - msa_aa:
-      - meta:
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  msa_aa:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -63,11 +73,17 @@ output:
           description: Fasta file containing the multiple sequence alignment with Amino
             Acid alphabet
           pattern: "*.{fa}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
 maintainers:
diff --git a/modules/nf-core/foldmason/easymsa/tests/tags.yml b/modules/nf-core/foldmason/easymsa/tests/tags.yml
deleted file mode 100644
index 057861ce..00000000
--- a/modules/nf-core/foldmason/easymsa/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-foldmason/easymsa:
-  - "modules/nf-core/foldmason/easymsa/**"
diff --git a/modules/nf-core/foldmason/msa2lddtreport/meta.yml b/modules/nf-core/foldmason/msa2lddtreport/meta.yml
index cf9749ac..1e74046c 100644
--- a/modules/nf-core/foldmason/msa2lddtreport/meta.yml
+++ b/modules/nf-core/foldmason/msa2lddtreport/meta.yml
@@ -25,6 +25,7 @@ input:
         type: file
         description: Input alignment file.
         pattern: "*.{fa,fasta,aln}"
+        ontologies: []
   - - meta2:
         type: map
         description: |
@@ -34,6 +35,7 @@ input:
         type: file
         description: Input foldmason database.
         pattern: "*"
+        ontologies: []
   - - meta3:
         type: map
         description: |
@@ -43,6 +45,7 @@ input:
         type: file
         description: Protein structures used for the visualization.
         pattern: "*.{pdb}"
+        ontologies: []
   - - meta4:
         type: map
         description: |
@@ -52,22 +55,26 @@ input:
         type: file
         description: Guide tree used for the visualization .
         pattern: "*.{nwk,dnd}"
+        ontologies: []
 output:
-  - html:
-      - meta:
+  html:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
             e.g. `[ id:'sample1', single_end:false ]`
-      - "${prefix}.html":
+      - ${prefix}.html:
           type: file
           description: HTML file with the foldmason visualization
           pattern: "*.{html}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
 maintainers:
diff --git a/modules/nf-core/kalign/align/kalign-align.diff b/modules/nf-core/kalign/align/kalign-align.diff
index d39aedfe..e0982099 100644
--- a/modules/nf-core/kalign/align/kalign-align.diff
+++ b/modules/nf-core/kalign/align/kalign-align.diff
@@ -1,5 +1,4 @@
 Changes in component 'nf-core/kalign/align'
-'modules/nf-core/kalign/align/environment.yml' is unchanged
 Changes in 'kalign/align/main.nf':
 --- modules/nf-core/kalign/align/main.nf
 +++ modules/nf-core/kalign/align/main.nf
@@ -19,7 +18,7 @@ Changes in 'kalign/align/main.nf':
      tuple val(meta), path(fasta)
 
 'modules/nf-core/kalign/align/meta.yml' is unchanged
-'modules/nf-core/kalign/align/tests/main.nf.test' is unchanged
+'modules/nf-core/kalign/align/environment.yml' is unchanged
 'modules/nf-core/kalign/align/tests/main.nf.test.snap' is unchanged
-'modules/nf-core/kalign/align/tests/tags.yml' is unchanged
+'modules/nf-core/kalign/align/tests/main.nf.test' is unchanged
 ************************************************************
diff --git a/modules/nf-core/kalign/align/meta.yml b/modules/nf-core/kalign/align/meta.yml
index 66c5ca8a..712c34c5 100644
--- a/modules/nf-core/kalign/align/meta.yml
+++ b/modules/nf-core/kalign/align/meta.yml
@@ -23,28 +23,37 @@ input:
         type: file
         description: Input sequences in FASTA format. May be gzipped or uncompressed.
         pattern: "*.{fa,fasta}{.gz,}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
             e.g. `[ id:'test']`
       - "*.aln{.gz,}":
           type: file
-          description: Alignment file. May be gzipped or uncompressed, depending on if
-            `compress` is set to `true` or `false`.
+          description: Alignment file. May be gzipped or uncompressed, depending on
+            if `compress` is set to `true` or `false`.
           pattern: "*.{aln}{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/kalign/align/tests/tags.yml b/modules/nf-core/kalign/align/tests/tags.yml
deleted file mode 100644
index fa93d172..00000000
--- a/modules/nf-core/kalign/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-kalign/align:
-  - "modules/nf-core/kalign/align/**"
diff --git a/modules/nf-core/learnmsa/align/meta.yml b/modules/nf-core/learnmsa/align/meta.yml
index 7cd4a63c..db4c23e5 100644
--- a/modules/nf-core/learnmsa/align/meta.yml
+++ b/modules/nf-core/learnmsa/align/meta.yml
@@ -23,9 +23,12 @@ input:
         type: file
         description: Input sequences in FASTA format.
         pattern: "*.{fa,fasta}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -34,11 +37,17 @@ output:
           type: file
           description: Alignment file, in FASTA format.
           pattern: "*.aln"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/learnmsa/align/tests/tags.yml b/modules/nf-core/learnmsa/align/tests/tags.yml
deleted file mode 100644
index 127b6282..00000000
--- a/modules/nf-core/learnmsa/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-learnmsa/align:
-  - "modules/nf-core/learnmsa/align/**"
diff --git a/modules/nf-core/mafft/align/meta.yml b/modules/nf-core/mafft/align/meta.yml
index 30d80538..801a9310 100644
--- a/modules/nf-core/mafft/align/meta.yml
+++ b/modules/nf-core/mafft/align/meta.yml
@@ -30,6 +30,9 @@ input:
         description: FASTA file containing the sequences to align. May be gzipped or
           uncompressed.
         pattern: "*.{fa,fasta}{.gz,}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta2:
         type: map
         description: |
@@ -40,6 +43,9 @@ input:
         description: FASTA file containing sequences to align to the sequences in `fasta`
           using `--add`. May be gzipped or uncompressed.
         pattern: "*.{fa,fasta}{.gz,}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta3:
         type: map
         description: |
@@ -50,6 +56,9 @@ input:
         description: FASTA file containing sequences to align to the sequences in `fasta`
           using `--addfragments`. May be gzipped or uncompressed.
         pattern: "*.{fa,fasta}{.gz,}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta4:
         type: map
         description: |
@@ -60,6 +69,9 @@ input:
         description: FASTA file containing sequences to align to the sequences in `fasta`
           using `--addfull`. May be gzipped or uncompressed.
         pattern: "*.{fa,fasta}{.gz,}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta5:
         type: map
         description: |
@@ -70,6 +82,9 @@ input:
         description: FASTA file containing sequences to align to the sequences in `fasta`
           using `--addprofile`. May be gzipped or uncompressed.
         pattern: "*.{fa,fasta}{.gz,}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta6:
         type: map
         description: |
@@ -80,14 +95,17 @@ input:
         description: FASTA file containing sequences to align to the sequences in `fasta`
           using `--addlong`. May be gzipped or uncompressed.
         pattern: "*.{fa,fasta}{.gz,}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - fas:
-      - meta:
+  fas:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -96,11 +114,17 @@ output:
           type: file
           description: Aligned sequences in FASTA format. May be gzipped or uncompressed.
           pattern: "*.fas{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@MillironX"
 maintainers:
diff --git a/modules/nf-core/mafft/align/tests/tags.yml b/modules/nf-core/mafft/align/tests/tags.yml
deleted file mode 100644
index 97b6666f..00000000
--- a/modules/nf-core/mafft/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-mafft/align:
-  - modules/nf-core/mafft/align/**
diff --git a/modules/nf-core/mafft/guidetree/meta.yml b/modules/nf-core/mafft/guidetree/meta.yml
index 8ee7779e..af018a4a 100644
--- a/modules/nf-core/mafft/guidetree/meta.yml
+++ b/modules/nf-core/mafft/guidetree/meta.yml
@@ -24,9 +24,12 @@ input:
         type: file
         description: FASTA file containing the sequences to be used to render the guidetree.
         pattern: "*.{fa,fasta}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
 output:
-  - tree:
-      - meta:
+  tree:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -35,11 +38,15 @@ output:
           type: file
           description: Guide tree in Newick format.
           pattern: "*.dnd"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
 maintainers:
diff --git a/modules/nf-core/magus/align/meta.yml b/modules/nf-core/magus/align/meta.yml
index e5d7cdb0..96a49ad2 100644
--- a/modules/nf-core/magus/align/meta.yml
+++ b/modules/nf-core/magus/align/meta.yml
@@ -26,6 +26,9 @@ input:
         type: file
         description: Input sequences in FASTA format.
         pattern: "*.{fa,fna,fasta}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta2:
         type: map
         description: |
@@ -38,14 +41,16 @@ input:
           MAGUS will construct its own guide tree. If empty, `fasttree` is used as a
           default.
         pattern: "*.{dnd,tree}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample meta information.
@@ -53,14 +58,20 @@ output:
       - "*.aln{.gz,}":
           type: file
           description: File containing the output alignment, in FASTA format containing
-            gaps. The sequences may be in a different order than in the input FASTA. The
-            output file may or may not be gzipped, depending on the value supplied to
-            `compress`.
+            gaps. The sequences may be in a different order than in the input FASTA.
+            The output file may or may not be gzipped, depending on the value supplied
+            to `compress`.
           pattern: "*.aln{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@lrauschning"
diff --git a/modules/nf-core/magus/align/tests/tags.yml b/modules/nf-core/magus/align/tests/tags.yml
deleted file mode 100644
index f2dfd3a7..00000000
--- a/modules/nf-core/magus/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-magus/align:
-  - "modules/nf-core/magus/align/**"
diff --git a/modules/nf-core/mtmalign/align/meta.yml b/modules/nf-core/mtmalign/align/meta.yml
index 281434da..d2d137dc 100644
--- a/modules/nf-core/mtmalign/align/meta.yml
+++ b/modules/nf-core/mtmalign/align/meta.yml
@@ -31,14 +31,17 @@ input:
         description: Input protein structures in PDB format. Files may be gzipped or
           uncompressed. They should contain exactly one chain!
         pattern: "*.{pdb}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_1476 # PDB
+          - edam: http://edamontology.org/format_1477 # mmCIF
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -47,8 +50,12 @@ output:
           type: file
           description: Alignment in FASTA format. May be gzipped or uncompressed.
           pattern: "*.aln{.gz,}"
-  - structure:
-      - meta:
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  structure:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -57,11 +64,15 @@ output:
           type: file
           description: Overlaid structures in PDB format. May be gzipped or uncompressed.
           pattern: "${prefix}.pdb{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_1476 # PDB
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@lrauschning"
 maintainers:
diff --git a/modules/nf-core/mtmalign/align/tests/tags.yml b/modules/nf-core/mtmalign/align/tests/tags.yml
deleted file mode 100644
index 87a2e3bc..00000000
--- a/modules/nf-core/mtmalign/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-mtmalign/align:
-  - modules/nf-core/mtmalign/align/**
diff --git a/modules/nf-core/muscle5/super5/meta.yml b/modules/nf-core/muscle5/super5/meta.yml
index 0959c565..93c93e0e 100644
--- a/modules/nf-core/muscle5/super5/meta.yml
+++ b/modules/nf-core/muscle5/super5/meta.yml
@@ -29,28 +29,37 @@ input:
         type: file
         description: Input sequences for alignment must be in FASTA format
         pattern: "*.{fasta,fa,fna}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
             e.g. `[ id:'test', single_end:false ]`
       - "*.aln{.gz,}":
           type: file
-          description: Multiple sequence alignment produced in gzipped FASTA format. If
-            '-perm all' is passed in ext.args, this will be multiple files per input!
+          description: Multiple sequence alignment produced in gzipped FASTA format.
+            If '-perm all' is passed in ext.args, this will be multiple files per input!
           pattern: "*.{aln.gz}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@alessiovignoli"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/muscle5/super5/tests/main.nf.test b/modules/nf-core/muscle5/super5/tests/main.nf.test
index c1541208..1199438b 100644
--- a/modules/nf-core/muscle5/super5/tests/main.nf.test
+++ b/modules/nf-core/muscle5/super5/tests/main.nf.test
@@ -25,7 +25,11 @@ nextflow_process {
             then {
                 assertAll(
                         { assert process.success },
-                        { assert snapshot(process.out.alignment).match("alignment - uncompressed")},
+                        { assert snapshot(
+                                process.out.alignment,
+                                process.out.versions
+                            ).match("alignment - uncompressed")
+                        },
                         )
             }
         }
@@ -45,7 +49,11 @@ nextflow_process {
             then {
                 assertAll(
                         { assert process.success },
-                        { assert snapshot(process.out.alignment).match("alignment - compressed")},
+                        { assert snapshot(
+                                process.out.alignment,
+                                process.out.versions
+                            ).match("alignment - compressed")
+                        },
                         )
             }
         }
@@ -65,7 +73,11 @@ nextflow_process {
             then {
                 assertAll(
                         { assert process.success },
-                        { assert snapshot(process.out.alignment).match("perm-all")},
+                        { assert snapshot(
+                                process.out.alignment,
+                                process.out.versions
+                            ).match("perm-all")
+                        },
                         )
             }
         }
diff --git a/modules/nf-core/muscle5/super5/tests/main.nf.test.snap b/modules/nf-core/muscle5/super5/tests/main.nf.test.snap
index ce7aadf0..322bf469 100644
--- a/modules/nf-core/muscle5/super5/tests/main.nf.test.snap
+++ b/modules/nf-core/muscle5/super5/tests/main.nf.test.snap
@@ -8,9 +8,16 @@
                     },
                     "test.aln.gz:md5,46ba556df08f7aabbe5e1ba31d226b6a"
                 ]
+            ],
+            [
+                "versions.yml:md5,5b5af5ac30721027249837f33a4da01f"
             ]
         ],
-        "timestamp": "2024-02-09T19:08:23.498404397"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.4"
+        },
+        "timestamp": "2025-03-25T15:02:30.405822"
     },
     "perm-all": {
         "content": [
@@ -26,9 +33,16 @@
                         "testnone.0.aln.gz:md5,46ba556df08f7aabbe5e1ba31d226b6a"
                     ]
                 ]
+            ],
+            [
+                "versions.yml:md5,5b5af5ac30721027249837f33a4da01f"
             ]
         ],
-        "timestamp": "2024-02-09T19:08:37.386512953"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.4"
+        },
+        "timestamp": "2025-03-25T15:02:33.943538"
     },
     "alignment - uncompressed": {
         "content": [
@@ -39,8 +53,15 @@
                     },
                     "test.aln:md5,46ba556df08f7aabbe5e1ba31d226b6a"
                 ]
+            ],
+            [
+                "versions.yml:md5,5b5af5ac30721027249837f33a4da01f"
             ]
         ],
-        "timestamp": "2024-02-09T19:16:25.330353817"
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.4"
+        },
+        "timestamp": "2025-03-25T15:02:26.512916"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/muscle5/super5/tests/tags.yml b/modules/nf-core/muscle5/super5/tests/tags.yml
deleted file mode 100644
index c915c6a3..00000000
--- a/modules/nf-core/muscle5/super5/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-muscle5/super5:
-  - "modules/nf-core/muscle5/super5/**"
diff --git a/modules/nf-core/pigz/compress/main.nf b/modules/nf-core/pigz/compress/main.nf
index 152e7006..7ccfa6e9 100644
--- a/modules/nf-core/pigz/compress/main.nf
+++ b/modules/nf-core/pigz/compress/main.nf
@@ -27,7 +27,7 @@ process PIGZ_COMPRESS {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        pigz:\$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz\\w*//' )
+        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz[[:space:]]*//' )
     END_VERSIONS
     """
 
@@ -39,7 +39,7 @@ process PIGZ_COMPRESS {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        pigz:\$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz\\w*//' )
+        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz[[:space:]]*//' )
     END_VERSIONS
     """
 }
diff --git a/modules/nf-core/pigz/compress/meta.yml b/modules/nf-core/pigz/compress/meta.yml
index 0966e651..573ae26f 100644
--- a/modules/nf-core/pigz/compress/meta.yml
+++ b/modules/nf-core/pigz/compress/meta.yml
@@ -22,9 +22,10 @@ input:
         type: file
         description: File to be compressed
         pattern: "*.*"
+        ontologies: []
 output:
-  - archive:
-      - meta:
+  archive:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -33,11 +34,15 @@ output:
           type: file
           description: The compressed file
           pattern: "*.gz"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies:
+            - edam: http://edamontology.org/format_3989 # GZIP format
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@leoisl"
 maintainers:
diff --git a/modules/nf-core/pigz/compress/tests/tags.yml b/modules/nf-core/pigz/compress/tests/tags.yml
deleted file mode 100644
index 42c46bfa..00000000
--- a/modules/nf-core/pigz/compress/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-pigz/compress:
-  - "modules/nf-core/pigz/compress/**"
diff --git a/modules/nf-core/pigz/uncompress/main.nf b/modules/nf-core/pigz/uncompress/main.nf
index 47792482..db712811 100644
--- a/modules/nf-core/pigz/uncompress/main.nf
+++ b/modules/nf-core/pigz/uncompress/main.nf
@@ -31,7 +31,7 @@ process PIGZ_UNCOMPRESS {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz\\w*//' )
+        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz[[:space:]]*//' )
     END_VERSIONS
     """
 
@@ -39,11 +39,11 @@ process PIGZ_UNCOMPRESS {
     def args = task.ext.args ?: ''
     uncompressed_filename = zip.toString() - '.gz'
     """
-    touch ${zip.dropRight(3)}
+    touch $uncompressed_filename
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz\\w*//' )
+        pigz: \$(echo \$(pigz --version 2>&1) | sed 's/^.*pigz[[:space:]]*//' )
     END_VERSIONS
     """
 }
diff --git a/modules/nf-core/pigz/uncompress/meta.yml b/modules/nf-core/pigz/uncompress/meta.yml
index 3f583b22..cddd0a3b 100644
--- a/modules/nf-core/pigz/uncompress/meta.yml
+++ b/modules/nf-core/pigz/uncompress/meta.yml
@@ -22,9 +22,11 @@ input:
         type: file
         description: Gzipped file
         pattern: "*.{gzip}"
+        ontologies:
+          - edam: http://edamontology.org/format_3989 # GZIP format
 output:
-  - file:
-      - meta:
+  file:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -33,10 +35,13 @@ output:
           type: file
           description: File to compress
           pattern: "*"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@lrauschning"
diff --git a/modules/nf-core/pigz/uncompress/tests/main.nf.test b/modules/nf-core/pigz/uncompress/tests/main.nf.test
index 62ab27e2..9c3289bc 100644
--- a/modules/nf-core/pigz/uncompress/tests/main.nf.test
+++ b/modules/nf-core/pigz/uncompress/tests/main.nf.test
@@ -29,5 +29,30 @@ nextflow_process {
         }
 
     }
+    
+    test("Should run without failures - stub") {
+        
+        options "-stub"
+        
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+            process {
+                """
+                input[0] = [ [ id:'test'],
+                                file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/fastq/test_1.fastq.gz', checkIfExists: true)
+                            ]
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
 
 }
\ No newline at end of file
diff --git a/modules/nf-core/pigz/uncompress/tests/main.nf.test.snap b/modules/nf-core/pigz/uncompress/tests/main.nf.test.snap
index 3781c355..384a574f 100644
--- a/modules/nf-core/pigz/uncompress/tests/main.nf.test.snap
+++ b/modules/nf-core/pigz/uncompress/tests/main.nf.test.snap
@@ -1,4 +1,37 @@
 {
+    "Should run without failures - stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test_1.fastq:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,e0c776f8d0bfa6d8e49e02aeb0728355"
+                ],
+                "file": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test_1.fastq:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,e0c776f8d0bfa6d8e49e02aeb0728355"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.9.0",
+            "nextflow": "24.10.5"
+        },
+        "timestamp": "2025-03-11T11:24:38.144787334"
+    },
     "Should run without failures": {
         "content": [
             {
@@ -11,7 +44,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,9337a6faead437b8d03c8ec4efb02c36"
+                    "versions.yml:md5,e0c776f8d0bfa6d8e49e02aeb0728355"
                 ],
                 "file": [
                     [
@@ -22,14 +55,14 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,9337a6faead437b8d03c8ec4efb02c36"
+                    "versions.yml:md5,e0c776f8d0bfa6d8e49e02aeb0728355"
                 ]
             }
         ],
         "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "24.10.4"
+            "nf-test": "0.9.0",
+            "nextflow": "24.10.5"
         },
-        "timestamp": "2025-02-18T10:37:49.131086207"
+        "timestamp": "2025-03-11T11:23:17.620127425"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/pigz/uncompress/tests/tags.yml b/modules/nf-core/pigz/uncompress/tests/tags.yml
deleted file mode 100644
index 6719a90a..00000000
--- a/modules/nf-core/pigz/uncompress/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-pigz/uncompress:
-  - modules/nf-core/pigz/uncompress/**
diff --git a/modules/nf-core/tcoffee/align/main.nf b/modules/nf-core/tcoffee/align/main.nf
index aae80839..e1f7d7f2 100644
--- a/modules/nf-core/tcoffee/align/main.nf
+++ b/modules/nf-core/tcoffee/align/main.nf
@@ -4,7 +4,7 @@ process TCOFFEE_ALIGN {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/t-coffee_tmalign_pigz:f861f2f8f266c2fe':
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/75/75830929ed209853ab621dafcc4105618eba02408a731e4fd4aeee94ada424bc/data':
         'community.wave.seqera.io/library/t-coffee_tmalign_pigz:be7dac2ae6aba380' }"
 
     input:
diff --git a/modules/nf-core/tcoffee/align/meta.yml b/modules/nf-core/tcoffee/align/meta.yml
index e5cdd82c..e38b25d9 100644
--- a/modules/nf-core/tcoffee/align/meta.yml
+++ b/modules/nf-core/tcoffee/align/meta.yml
@@ -29,6 +29,9 @@ input:
         type: file
         description: Input sequences in FASTA format
         pattern: "*.{fa,fasta}"
+        ontologies:
+          - edam: http://edamontology.org/format_1919 # SEQUENCE-LIKE
+          - edam: http://edamontology.org/format_1929 # FASTA
   - - meta2:
         type: map
         description: |
@@ -38,6 +41,8 @@ input:
         type: file
         description: Input guide tree in Newick format
         pattern: "*.{dnd}"
+        ontologies:
+          - edam: http://edamontology.org/format_2006 # PHYLOGENETIC TREE
   - - meta3:
         type: map
         description: |
@@ -47,20 +52,22 @@ input:
         type: file
         description: T_coffee template file that maps sequences to the accessory information
           files to be used.
-        pattern: "*"
+        ontologies:
+          - edam: http://edamontology.org/format_1476 # PDB
     - accessory_information:
         type: file
         description: Accessory files to be used in the alignment. For example, it could
           be protein structures or secondary structures.
-        pattern: "*"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies:
+          - edam: http://edamontology.org/format_1476 # PDB
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -69,8 +76,12 @@ output:
           type: file
           description: Alignment file in FASTA format. May be gzipped.
           pattern: "*.aln{.gz,}"
-  - lib:
-      - meta:
+          ontologies:
+            - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+            - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+            - edam: http://edamontology.org/format_1984 # FASTA-ALN
+  lib:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -79,11 +90,14 @@ output:
           type: file
           description: optional output, the library generated from the MSA file.
           pattern: "*.*lib"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/tcoffee/align/tests/tags.yml b/modules/nf-core/tcoffee/align/tests/tags.yml
deleted file mode 100644
index b367ce02..00000000
--- a/modules/nf-core/tcoffee/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-tcoffee/align:
-  - "modules/nf-core/tcoffee/align/**"
diff --git a/modules/nf-core/tcoffee/alncompare/meta.yml b/modules/nf-core/tcoffee/alncompare/meta.yml
index 13890be6..1df07c04 100644
--- a/modules/nf-core/tcoffee/alncompare/meta.yml
+++ b/modules/nf-core/tcoffee/alncompare/meta.yml
@@ -45,8 +45,8 @@ input:
           - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
           - edam: http://edamontology.org/format_1984 # FASTA-ALN
 output:
-  - scores:
-      - meta:
+  scores:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -56,13 +56,13 @@ output:
           description: a file containing the score of the alignment
           pattern: "*.scores"
           ontologies: []
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
-          ontologies:
-            - edam: http://edamontology.org/format_3750 # YAML
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@l-mansouri"
   - "@luisas"
diff --git a/modules/nf-core/tcoffee/consensus/meta.yml b/modules/nf-core/tcoffee/consensus/meta.yml
index 22d194de..aded9744 100644
--- a/modules/nf-core/tcoffee/consensus/meta.yml
+++ b/modules/nf-core/tcoffee/consensus/meta.yml
@@ -30,6 +30,7 @@ input:
         description: List of multiple sequence alignments in FASTA format to be used
           to compute the consensus
         pattern: "*.{fa,fasta}"
+        ontologies: []
   - - meta2:
         type: map
         description: |
@@ -39,14 +40,15 @@ input:
         type: file
         description: Input guide tree in Newick format
         pattern: "*.{dnd}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies: []
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -56,22 +58,26 @@ output:
           type: file
           description: Alignment file in FASTA format. May be gzipped.
           pattern: "*.aln{.gz,}"
-  - eval:
-      - meta:
+          ontologies: []
+  eval:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
-            e.g. `[ id:'test']`
-          pattern: "*.{score_html, score_ascii}"
+            e.g. `[ id:'sample1' ]`
+          pattern: "*.{fa,fasta,aln}"
       - "*.{score_html,sp_ascii}":
           type: file
           description: Consensus evaluation file.
           pattern: "*.{score_html, score_ascii}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
 maintainers:
diff --git a/modules/nf-core/tcoffee/consensus/tests/main.nf.test.snap b/modules/nf-core/tcoffee/consensus/tests/main.nf.test.snap
index 4af43262..18663a6c 100644
--- a/modules/nf-core/tcoffee/consensus/tests/main.nf.test.snap
+++ b/modules/nf-core/tcoffee/consensus/tests/main.nf.test.snap
@@ -6,6 +6,10 @@
                 "versions.yml:md5,79d4f7ac70fab29f8cd0a18a4d3f76d1"
             ]
         ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.4"
+        },
         "timestamp": "2024-09-18T13:54:43.924522245"
     },
     "consensus - stub": {
@@ -55,6 +59,10 @@
                 ]
             }
         ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.4"
+        },
         "timestamp": "2024-10-18T11:41:11.216683"
     },
     "consensus - tree - compressed- seatoxin": {
@@ -64,6 +72,10 @@
                 "versions.yml:md5,79d4f7ac70fab29f8cd0a18a4d3f76d1"
             ]
         ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.4"
+        },
         "timestamp": "2024-09-18T13:55:03.627733582"
     },
     "consensus_evaluation - no tree - uncompressed - seatoxin ": {
@@ -73,6 +85,10 @@
                 "versions.yml:md5,79d4f7ac70fab29f8cd0a18a4d3f76d1"
             ]
         ],
+        "meta": {
+            "nf-test": "0.9.2",
+            "nextflow": "24.10.4"
+        },
         "timestamp": "2024-10-18T11:43:51.839734"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/tcoffee/consensus/tests/tags.yml b/modules/nf-core/tcoffee/consensus/tests/tags.yml
deleted file mode 100644
index f3eb4719..00000000
--- a/modules/nf-core/tcoffee/consensus/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-tcoffee/consensus:
-  - "modules/nf-core/tcoffee/consensus/**"
diff --git a/modules/nf-core/tcoffee/extractfrompdb/meta.yml b/modules/nf-core/tcoffee/extractfrompdb/meta.yml
index 107eabe1..1eab27f6 100644
--- a/modules/nf-core/tcoffee/extractfrompdb/meta.yml
+++ b/modules/nf-core/tcoffee/extractfrompdb/meta.yml
@@ -23,9 +23,10 @@ input:
     - pdb:
         type: file
         description: Input pdb to be reformatted
+        ontologies: []
 output:
-  - formatted_pdb:
-      - meta:
+  formatted_pdb:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -34,10 +35,13 @@ output:
           type: file
           description: Formatted pdb file
           pattern: "*"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
diff --git a/modules/nf-core/tcoffee/extractfrompdb/tcoffee-extractfrompdb.diff b/modules/nf-core/tcoffee/extractfrompdb/tcoffee-extractfrompdb.diff
index ca2c2925..255f9ae1 100644
--- a/modules/nf-core/tcoffee/extractfrompdb/tcoffee-extractfrompdb.diff
+++ b/modules/nf-core/tcoffee/extractfrompdb/tcoffee-extractfrompdb.diff
@@ -1,5 +1,4 @@
 Changes in component 'nf-core/tcoffee/extractfrompdb'
-'modules/nf-core/tcoffee/extractfrompdb/environment.yml' is unchanged
 Changes in 'tcoffee/extractfrompdb/main.nf':
 --- modules/nf-core/tcoffee/extractfrompdb/main.nf
 +++ modules/nf-core/tcoffee/extractfrompdb/main.nf
@@ -38,6 +37,7 @@ Changes in 'tcoffee/extractfrompdb/main.nf':
      "${task.process}":
 
 'modules/nf-core/tcoffee/extractfrompdb/meta.yml' is unchanged
-'modules/nf-core/tcoffee/extractfrompdb/tests/main.nf.test' is unchanged
+'modules/nf-core/tcoffee/extractfrompdb/environment.yml' is unchanged
 'modules/nf-core/tcoffee/extractfrompdb/tests/main.nf.test.snap' is unchanged
+'modules/nf-core/tcoffee/extractfrompdb/tests/main.nf.test' is unchanged
 ************************************************************
diff --git a/modules/nf-core/tcoffee/irmsd/meta.yml b/modules/nf-core/tcoffee/irmsd/meta.yml
index de776802..7a82e2fc 100644
--- a/modules/nf-core/tcoffee/irmsd/meta.yml
+++ b/modules/nf-core/tcoffee/irmsd/meta.yml
@@ -30,6 +30,11 @@ input:
         type: file
         description: |
           Multiple Sequence Alignment File
+        ontologies:
+          - edam: http://edamontology.org/format_1929 # FASTA
+          - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+          - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+          - edam: http://edamontology.org/format_1984 # FASTA-ALN
   - - meta2:
         type: map
         description: |
@@ -39,13 +44,17 @@ input:
         type: file
         description: |
           Template file
+        ontologies:
+          - edam: http://edamontology.org/format_1476 # PDB
     - structures:
         type: file
         description: |
           Structure file
+        ontologies:
+          - edam: http://edamontology.org/format_1476 # PDB
 output:
-  - irmsd:
-      - meta:
+  irmsd:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -53,11 +62,13 @@ output:
       - ${prefix}.irmsd:
           type: file
           description: File containing the irmsd of the alignment
-          pattern: "*"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
diff --git a/modules/nf-core/tcoffee/irmsd/tests/tags.yml b/modules/nf-core/tcoffee/irmsd/tests/tags.yml
deleted file mode 100644
index 637c3c57..00000000
--- a/modules/nf-core/tcoffee/irmsd/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-tcoffee/irmsd:
-  - "modules/nf-core/tcoffee/irmsd/**"
diff --git a/modules/nf-core/tcoffee/regressive/meta.yml b/modules/nf-core/tcoffee/regressive/meta.yml
index 52d3719f..a272190f 100644
--- a/modules/nf-core/tcoffee/regressive/meta.yml
+++ b/modules/nf-core/tcoffee/regressive/meta.yml
@@ -1,5 +1,6 @@
 name: "tcoffee_regressive"
-description: Aligns sequences using the regressive algorithm as implemented in the T_COFFEE package
+description: Aligns sequences using the regressive algorithm as implemented in the
+  T_COFFEE package
 keywords:
   - alignment
   - MSA
@@ -29,6 +30,7 @@ input:
         type: file
         description: Input sequences in FASTA format
         pattern: "*.{fa,fasta}"
+        ontologies: []
   - - meta2:
         type: map
         description: |
@@ -38,6 +40,7 @@ input:
         type: file
         description: Input guide tree in Newick format
         pattern: "*.{dnd}"
+        ontologies: []
   - - meta3:
         type: map
         description: |
@@ -48,19 +51,21 @@ input:
         description: T_coffee template file that maps sequences to the accessory information
           files to be used.
         pattern: "*"
+        ontologies: []
     - accessory_information:
         type: file
         description: Accessory files to be used in the alignment. For example, it could
           be protein structures or secondary structures.
         pattern: "*"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression. Compression is done using
-          pigz, and is multithreaded.
+        ontologies: []
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression. Compression is done using pigz,
+        and is multithreaded.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -69,11 +74,14 @@ output:
           type: file
           description: Alignment file in FASTA format. May be gzipped.
           pattern: "*.aln{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
 maintainers:
diff --git a/modules/nf-core/tcoffee/seqreformat/meta.yml b/modules/nf-core/tcoffee/seqreformat/meta.yml
index 17111df3..3d686f18 100644
--- a/modules/nf-core/tcoffee/seqreformat/meta.yml
+++ b/modules/nf-core/tcoffee/seqreformat/meta.yml
@@ -23,9 +23,10 @@ input:
     - infile:
         type: file
         description: Input file to be reformatted
+        ontologies: []
 output:
-  - formatted_file:
-      - meta:
+  formatted_file:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -34,11 +35,14 @@ output:
           type: file
           description: Formatted file
           pattern: "*"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
   - "@JoseEspinosa"
diff --git a/modules/nf-core/tcoffee/seqreformat/tests/tags.yml b/modules/nf-core/tcoffee/seqreformat/tests/tags.yml
deleted file mode 100644
index 268d8814..00000000
--- a/modules/nf-core/tcoffee/seqreformat/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-tcoffee/seqreformat:
-  - "modules/nf-core/tcoffee/seqreformat/**"
diff --git a/modules/nf-core/tcoffee/tcs/meta.yml b/modules/nf-core/tcoffee/tcs/meta.yml
index 2846d4ba..573f5115 100644
--- a/modules/nf-core/tcoffee/tcs/meta.yml
+++ b/modules/nf-core/tcoffee/tcs/meta.yml
@@ -33,6 +33,11 @@ input:
         description: fasta file containing the alignment to be evaluated. May be gzipped
           or uncompressed.
         pattern: "*.{aln,fa,fasta,fas}{.gz,}"
+        ontologies:
+          - edam: http://edamontology.org/format_1929 # FASTA
+          - edam: http://edamontology.org/format_2554 # ALIGNMENT FORMAT TXT
+          - edam: http://edamontology.org/format_1921 # ALIGNMENT FORMAT
+          - edam: http://edamontology.org/format_1984 # FASTA-ALN
   - - meta2:
         type: map
         description: |
@@ -42,9 +47,10 @@ input:
         type: file
         description: lib file containing the alignment library of the given msa.
         pattern: "*{.tc_lib,*_lib}"
+        ontologies: []
 output:
-  - tcs:
-      - meta:
+  tcs:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -53,8 +59,9 @@ output:
           type: file
           description: The msa represented in tcs format, prepended with TCS scores
           pattern: "*.tcs"
-  - scores:
-      - meta:
+          ontologies: []
+  scores:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -63,10 +70,13 @@ output:
           type: file
           description: a file containing the score of the alignment in csv format
           pattern: "*.scores"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@alessiovignoli"
diff --git a/modules/nf-core/tcoffee/tcs/tests/tags.yml b/modules/nf-core/tcoffee/tcs/tests/tags.yml
deleted file mode 100644
index f8ad86bb..00000000
--- a/modules/nf-core/tcoffee/tcs/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-tcoffee/tcs:
-  - "modules/nf-core/tcoffee/tcs/**"
diff --git a/modules/nf-core/untar/meta.yml b/modules/nf-core/untar/meta.yml
index 3a37bb35..1603e382 100644
--- a/modules/nf-core/untar/meta.yml
+++ b/modules/nf-core/untar/meta.yml
@@ -1,5 +1,5 @@
 name: untar
-description: Extract files.
+description: Extract files from tar, tar.gz, tar.bz2, tar.xz archives
 keywords:
   - untar
   - uncompress
@@ -7,7 +7,7 @@ keywords:
 tools:
   - untar:
       description: |
-        Extract tar.gz files.
+        Extract tar, tar.gz, tar.bz2, tar.xz files.
       documentation: https://www.gnu.org/software/tar/manual/
       licence: ["GPL-3.0-or-later"]
       identifier: ""
@@ -19,11 +19,14 @@ input:
           e.g. [ id:'test', single_end:false ]
     - archive:
         type: file
-        description: File to be untar
-        pattern: "*.{tar}.{gz}"
+        description: File to be untarred
+        pattern: "*.{tar,tar.gz,tar.bz2,tar.xz}"
+        ontologies:
+          - edam: http://edamontology.org/format_3981 # TAR format
+          - edam: http://edamontology.org/format_3989 # GZIP format
 output:
-  - untar:
-      - meta:
+  untar:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -35,11 +38,13 @@ output:
             Groovy Map containing sample information
             e.g. [ id:'test', single_end:false ]
           pattern: "*/"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@joseespinosa"
   - "@drpatelh"
diff --git a/modules/nf-core/untar/tests/tags.yml b/modules/nf-core/untar/tests/tags.yml
deleted file mode 100644
index feb6f15c..00000000
--- a/modules/nf-core/untar/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-untar:
-  - modules/nf-core/untar/**
diff --git a/modules/nf-core/upp/align/meta.yml b/modules/nf-core/upp/align/meta.yml
index 08781fa6..fccbe366 100644
--- a/modules/nf-core/upp/align/meta.yml
+++ b/modules/nf-core/upp/align/meta.yml
@@ -25,6 +25,7 @@ input:
         type: file
         description: Input sequences in FASTA format
         pattern: "*.{fa,fasta}"
+        ontologies: []
   - - meta2:
         type: map
         description: |
@@ -34,13 +35,14 @@ input:
         type: file
         description: Input guide tree in Newick format
         pattern: "*.{dnd}"
-  - - compress:
-        type: boolean
-        description: Flag representing whether the output MSA should be compressed.
-          Set to true to enable/false to disable compression.
+        ontologies: []
+  - compress:
+      type: boolean
+      description: Flag representing whether the output MSA should be compressed. Set
+        to true to enable/false to disable compression.
 output:
-  - alignment:
-      - meta:
+  alignment:
+    - - meta:
           type: map
           description: |
             Groovy Map containing sample information
@@ -50,11 +52,14 @@ output:
           description: Alignment file, in FASTA format. May be gzipped or uncompressed,
             depending on if compress is set to true or false
           pattern: "*.aln{.gz,}"
-  - versions:
-      - versions.yml:
-          type: file
-          description: File containing software versions
-          pattern: "versions.yml"
+          ontologies: []
+  versions:
+    - versions.yml:
+        type: file
+        description: File containing software versions
+        pattern: "versions.yml"
+        ontologies:
+          - edam: http://edamontology.org/format_3750 # YAML
 authors:
   - "@luisas"
 maintainers:
diff --git a/modules/nf-core/upp/align/tests/tags.yml b/modules/nf-core/upp/align/tests/tags.yml
deleted file mode 100644
index adb26a51..00000000
--- a/modules/nf-core/upp/align/tests/tags.yml
+++ /dev/null
@@ -1,2 +0,0 @@
-upp/align:
-  - "modules/nf-core/upp/align/**"
diff --git a/subworkflows/local/ALIGN/main.nf b/subworkflows/local/ALIGN/main.nf
index da2a357c..47f6714f 100644
--- a/subworkflows/local/ALIGN/main.nf
+++ b/subworkflows/local/ALIGN/main.nf
@@ -56,7 +56,6 @@ workflow ALIGN {
     // ------------------------------------------------
     COMPUTE_TREES (
         ch_fastas,
-        ch_optional_data,
         ch_tools_split.tree.unique()
     )
     trees = COMPUTE_TREES.out.trees
diff --git a/subworkflows/local/ALIGN/meta.yml b/subworkflows/local/ALIGN/meta.yml
new file mode 100644
index 00000000..e69de29b
diff --git a/subworkflows/local/COMPUTE_TREES/main.nf b/subworkflows/local/COMPUTE_TREES/main.nf
index 66de6dfa..14a9a5c6 100644
--- a/subworkflows/local/COMPUTE_TREES/main.nf
+++ b/subworkflows/local/COMPUTE_TREES/main.nf
@@ -11,7 +11,6 @@ workflow COMPUTE_TREES {
 
     take:
     ch_fastas        //channel: [ meta, /path/to/file.fasta ]
-    ch_optional_data //channel: [ meta, template, [ /path/to/file1, /path/to/file2, ... ] ]
     tree_tools       //channel: [ meta ] ( tools to be run: meta.tree, meta.args_tree )
 
     main:
diff --git a/subworkflows/local/COMPUTE_TREES/meta.yml b/subworkflows/local/COMPUTE_TREES/meta.yml
new file mode 100644
index 00000000..f5fe264f
--- /dev/null
+++ b/subworkflows/local/COMPUTE_TREES/meta.yml
@@ -0,0 +1,52 @@
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
+name: "compute_trees"
+description: Compute guide trees from FASTA files using FAMSA, Clustal Omega, or MAFFT.
+keywords:
+  - guide tree
+  - phylogeny
+  - alignment
+  - FAMSA
+  - Clustal Omega
+  - MAFFT
+components:
+  - famsa/guidetree
+  - clustalo/guidetree
+  - mafft/guidetree
+input:
+  - ch_fastas:
+      description: Input FASTA sequences for which guide trees will be computed.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map.
+        - fasta:
+            type: file
+            description: Input FASTA file.
+            pattern: "*.{fasta,fa,faa}"
+  - tree_tools:
+      description: Defines which tree computation tools to run and with which arguments.
+      structure:
+        - meta:
+            type: map
+            description: Metadata specifying selected tool (FAMSA, CLUSTALO, MAFFT) and parameters ( tools to be run --> meta.tree, meta.args_tree ).
+output:
+  - trees:
+      description: Computed guide trees.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map.
+        - tree:
+            type: file
+            description: Output guide tree file.
+            pattern: "*.{nwk,tree}"
+  - versions:
+      type: file
+      description: File containing software version information.
+      pattern: "versions.yml"
+authors:
+  - "@luisasantus"
+  - "@joseespinosa"
+maintainers:
+  - "@luisasantus"
+  - "@joseespinosa"
diff --git a/tests/default.nf.test b/tests/default.nf.test
index 841c717f..884623f3 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -20,6 +20,8 @@ nextflow_pipeline {
             assertAll(
                 { assert workflow.success},
                 { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
                     // All stable path name, with a relative path
@@ -30,4 +32,4 @@ nextflow_pipeline {
             )
         }
     }
-}
+}
\ No newline at end of file
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
new file mode 100644
index 00000000..03251d98
--- /dev/null
+++ b/tests/default.nf.test.snap
@@ -0,0 +1,456 @@
+{
+    "-profile test_tiny": {
+        "content": [
+            78,
+            {
+                "CALCULATE_SEQSTATS": {
+                    "python": "3.11.0"
+                },
+                "CALC_GAPS": {
+                    "awk": "1.3.4 20200120"
+                },
+                "CONCAT_GAPS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_PLDDTS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SEQSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SIMSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SP": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TC": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TCS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONSENSUS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "EXTRACT_PLDDT": {
+                    "awk": "1.3.4 20200120"
+                },
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "MAFFT_ALIGN": {
+                    "mafft": 7.52,
+                    "pigz": "2.8)"
+                },
+                "MERGE_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
+                },
+                "PARSE_SIM": {
+                    "awk": "1.3.4 20200120",
+                    "cat": 8.32
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
+                },
+                "TCOFFEE_ALNCOMPARE_SP": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_TC": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_SEQREFORMAT_SIM": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_TCS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz",
+                "alignments/toxin-ref",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz",
+                "evaluation",
+                "evaluation/complete_summary_eval.csv",
+                "evaluation/consensus",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/tcoffee_irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "reports",
+                "reports/multiqc",
+                "reports/multiqc/multiqc_data",
+                "reports/multiqc/multiqc_data/llms-full.txt",
+                "reports/multiqc/multiqc_data/multiqc.log",
+                "reports/multiqc/multiqc_data/multiqc.parquet",
+                "reports/multiqc/multiqc_data/multiqc_citations.txt",
+                "reports/multiqc/multiqc_data/multiqc_data.json",
+                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
+                "reports/multiqc/multiqc_data/multiqc_sources.txt",
+                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
+                "reports/multiqc/multiqc_plots",
+                "reports/multiqc/multiqc_plots/pdf",
+                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
+                "reports/multiqc/multiqc_plots/png",
+                "reports/multiqc/multiqc_plots/png/summary_stats.png",
+                "reports/multiqc/multiqc_plots/svg",
+                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
+                "reports/multiqc/multiqc_report.html",
+                "reports/shiny_app",
+                "reports/shiny_app/run.sh",
+                "reports/shiny_app/shiny_app.py",
+                "reports/shiny_app/static",
+                "reports/shiny_app/static/bootstrap.min.css",
+                "reports/shiny_app/static/favicon.ico",
+                "reports/shiny_app/static/style.css",
+                "reports/visualization",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html",
+                "reports/visualization/seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html",
+                "stats",
+                "stats/complete_summary_stats.csv",
+                "stats/sequences",
+                "stats/sequences/perc_sim",
+                "stats/sequences/perc_sim/seatoxin-ref.txt",
+                "stats/sequences/perc_sim/toxin-ref.txt",
+                "stats/sequences/seqstats",
+                "stats/sequences/seqstats/seatoxin-ref_seqstats.csv",
+                "stats/sequences/seqstats/toxin-ref_seqstats.csv",
+                "stats/structures",
+                "stats/structures/plddt",
+                "stats/structures/plddt/seatoxin-ref_full_plddt.csv",
+                "trees",
+                "trees/seatoxin-ref",
+                "trees/seatoxin-ref/seatoxin-ref_FAMSA-args-default.dnd",
+                "trees/toxin-ref",
+                "trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd"
+            ],
+            [
+                "seatoxin-ref_CONSENSUS.aln:md5,fe31fc0603b7f4bcd06c13c474f8264d",
+                "seatoxin-ref_CONSENSUS.aln.gz:md5,fe31fc0603b7f4bcd06c13c474f8264d",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,514e6910e6a14353963d68d933c18171",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "toxin-ref_CONSENSUS.aln:md5,62ea7ad0d5d2b0527112c83c7d882160",
+                "toxin-ref_CONSENSUS.aln.gz:md5,62ea7ad0d5d2b0527112c83c7d882160",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,d24caa61ecbe107f1f60d70c4de58263",
+                "toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,326de89fce0fc44b83ce026190449e74",
+                "complete_summary_eval.csv:md5,bb9d24f9bd527c2290a3b87d1413e170",
+                "seatoxin-ref_CONSENSUS.aln.html:md5,f1804566c5282a4b56dfe4661d802086",
+                "seatoxin-ref_CONSENSUS.aln.sp_ascii:md5,9b4c5540ef94da99b7b35e0670a95f2f",
+                "toxin-ref_CONSENSUS.aln.html:md5,fd506d7063ec61a2eb54c25da1328a57",
+                "toxin-ref_CONSENSUS.aln.sp_ascii:md5,3e6c0fbf406f6453ab1fc2015e1320f4",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd:md5,c10111ab2b6eab2454db77f526fd3d6b",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd:md5,68b1bc3bbbe887161207fb530fffc30a",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,47a5091fde8a42ae52ccf17069ae1707",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,d133d1eab5a4700754c4a16d4a28f9ec",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,2124035ff0abf79322e7a2d3dda8c7c3",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,f351510a048a39584b4368d6bcfa504a",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,12ba6f9cfd9c886acc90e8348b192dcb",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,9a8ae84ad59c2c09a2d800f06464bd3c",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,5ce4d42ab1fed394349e24482044b6f5",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,27bcfb8bb054dbc165e3c88b16191f94",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
+                "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
+                "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
+                "llms-full.txt:md5,c24b2411e190b283f192035be234813b",
+                "multiqc.log:md5,208b4f847d34bbd58156fb7229820891",
+                "multiqc.parquet:md5,cee84ce184250b81e1e3ccfb7ac5ae44",
+                "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
+                "multiqc_data.json:md5,f8d15e87d3f90651ff8b2e701cf982f1",
+                "multiqc_software_versions.txt:md5,73681362b16365ed0a0b410c11b0ec7d",
+                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
+                "multiqc_summary_stats.txt:md5,79f9c3918f85708b9df4a2811102498b",
+                "summary_stats.pdf:md5,389c9c1bdba2542cd07d6533c3933c3f",
+                "summary_stats.png:md5,6a210741392732854b6ca0ed91c2165f",
+                "summary_stats.svg:md5,89e492aaee4aeca7608204891dbec5d1",
+                "multiqc_report.html:md5,f065b6358e020827a0177c5dcdb97b30",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html:md5,0dbcb624692ca5238f776c0ee15e7f2d",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,4552760dbe951b4ec96c9261d8244f7b",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html:md5,a37c1ce23116b79688dafd6469664a8b",
+                "complete_summary_stats.csv:md5,19cee5e76d1a601b967a2c8c672e3a69",
+                "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
+                "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
+                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
+                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
+                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
+                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
+                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.04.6"
+        },
+        "timestamp": "2025-10-17T15:26:13.056762925"
+    },
+    "-profile test": {
+        "content": [
+            95,
+            {
+                "CALCULATE_SEQSTATS": {
+                    "python": "3.11.0"
+                },
+                "CALC_GAPS": {
+                    "awk": "1.3.4 20200120"
+                },
+                "CLUSTALO_ALIGN": {
+                    "clustalo": "1.2.4",
+                    "pigz": "2.8)"
+                },
+                "CLUSTALO_GUIDETREE": {
+                    "clustalo": "1.2.4"
+                },
+                "CONCAT_SEQSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SIMSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "EXTRACT_PLDDT": {
+                    "awk": "1.3.4 20200120"
+                },
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "KALIGN_ALIGN": {
+                    "kalign": "3.4.0",
+                    "pigz": "2.8)"
+                },
+                "MAFFT_ALIGN": {
+                    "mafft": 7.52,
+                    "pigz": "2.8)"
+                },
+                "MAFFT_GUIDETREE": {
+                    "mafft": 7.525
+                },
+                "MAGUS_ALIGN": {
+                    "MAGUS": "0.2.0",
+                    "pigz": "2.8)"
+                },
+                "MUSCLE5_ALIGN": {
+                    "muscle": 5.1,
+                    "pigz": "2.8)"
+                },
+                "PARSE_SIM": {
+                    "awk": "1.3.4 20200120",
+                    "cat": 8.32
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "REGRESSIVE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_SP": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_TC": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_SEQREFORMAT_SIM": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_TCS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "UPP_ALIGN": {
+                    "upp": "4.5.5",
+                    "pigz": "2.4)"
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "alignments/toxin-ref",
+                "alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "evaluation",
+                "evaluation/tcoffee_tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "stats",
+                "stats/sequences",
+                "stats/sequences/perc_sim",
+                "stats/sequences/perc_sim/seatoxin-ref.txt",
+                "stats/sequences/perc_sim/toxin-ref.txt",
+                "stats/sequences/seqstats",
+                "stats/sequences/seqstats/seatoxin-ref_seqstats.csv",
+                "stats/sequences/seqstats/toxin-ref_seqstats.csv",
+                "stats/structures",
+                "stats/structures/plddt",
+                "stats/structures/plddt/seatoxin-ref_full_plddt.csv",
+                "trees",
+                "trees/seatoxin-ref",
+                "trees/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default.dnd",
+                "trees/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd",
+                "trees/seatoxin-ref/seatoxin-ref_FAMSA-args-default.dnd",
+                "trees/seatoxin-ref/seatoxin-ref_MAFFT-args-default.dnd",
+                "trees/toxin-ref",
+                "trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd",
+                "trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd",
+                "trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd",
+                "trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd"
+            ],
+            [
+                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln.gz:md5,f924f716efa6cda7b56f6d9d67ba5d44",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz:md5,56686f3b3d853ef31b4b43683c30f8f5",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz:md5,20844d321995ed865277254366ad9523",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz:md5,c6556744aeee7ba25803dab39963ef0b",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz:md5,9ec12eeea5bf34fc1149d69898728273",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz:md5,321521faec856ce5a444b01f517c3800",
+                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,f65e2f5c176e9cd11a3c90c332c3069e",
+                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,0f4fc63937804b3e566d9764e94aeb02",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores:md5,0bf4d8b10a274888f499095ef24589f7",
+                "seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs:md5,dbe9fc368b82979dd407c414138476df",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,24889456acb2ca3c67cefa42c50a8b9f",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,4b74c0c271882f51820654d557a698b1",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,b5b1539aa0cf75f1b079395c77523b37",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,890081067b40770970e894eed36df354",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,cfc7e04656de59ce988d33e2108a4270",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,8db2422c778f61445344edeffa6b4c47",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,43b5ec2cfa24eed12d9d6cc7799fb476",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,f65d8b513294e27bdd856814c3b8dc92",
+                "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
+                "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
+                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
+                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
+                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
+                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
+                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
+                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
+                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
+                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
+                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.04.6"
+        },
+        "timestamp": "2025-10-17T15:41:32.169056249"
+    }
+}
\ No newline at end of file
diff --git a/tests/main.nf.test b/tests/main.nf.test
deleted file mode 100644
index 0cc5c72c..00000000
--- a/tests/main.nf.test
+++ /dev/null
@@ -1,30 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "multiplesequencealign"
-    tag "PIPELINE"
-
-    test("Run with profile test") {
-
-        when {
-            params {
-                input  = 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv'
-                tools  = 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv'
-
-                // Output directory
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            assertAll(
-                { assert workflow.success },
-                // Capture versions snapshot
-                { assert snapshot(
-                    workflow.out.versions
-                ).match() }
-            )
-        }
-    }
-}

From 61a254d9632b3796b5c26f37e1320b6ce2f47b38 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Fri, 17 Oct 2025 16:58:55 +0200
Subject: [PATCH 14/58] update meta

---
 subworkflows/local/COMPUTE_TREES/meta.yml |  2 +
 subworkflows/local/EVALUATE/meta.yml      | 75 +++++++++++++++++++++++
 subworkflows/local/PREPROCESS/meta.yml    | 46 ++++++++++++++
 subworkflows/local/STATS/meta.yml         | 61 ++++++++++++++++++
 4 files changed, 184 insertions(+)
 create mode 100644 subworkflows/local/EVALUATE/meta.yml
 create mode 100644 subworkflows/local/PREPROCESS/meta.yml
 create mode 100644 subworkflows/local/STATS/meta.yml

diff --git a/subworkflows/local/COMPUTE_TREES/meta.yml b/subworkflows/local/COMPUTE_TREES/meta.yml
index f5fe264f..b2174569 100644
--- a/subworkflows/local/COMPUTE_TREES/meta.yml
+++ b/subworkflows/local/COMPUTE_TREES/meta.yml
@@ -47,6 +47,8 @@ output:
 authors:
   - "@luisasantus"
   - "@joseespinosa"
+  - "@mirpedrol"
+  - "@lrauschning"
 maintainers:
   - "@luisasantus"
   - "@joseespinosa"
diff --git a/subworkflows/local/EVALUATE/meta.yml b/subworkflows/local/EVALUATE/meta.yml
new file mode 100644
index 00000000..d39ae441
--- /dev/null
+++ b/subworkflows/local/EVALUATE/meta.yml
@@ -0,0 +1,75 @@
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
+name: "evaluate_msa_quality"
+description: Evaluate the quality of multiple sequence alignments (MSAs) using reference-, structure-, and intrinsic-based metrics.
+keywords:
+  - MSA
+  - alignment quality
+  - structure evaluation
+  - reference evaluation
+  - iRMSD
+  - sum-of-pairs
+  - total column score
+  - TCS
+  - gaps
+components:
+  - tcoffee/alncompare
+  - tcoffee/irmsd
+  - tcoffee/tcs
+  - csvtk/concat
+  - csvtk/join
+  - custom/calc_gaps
+  - custom/parse_irmsd
+input:
+  - ch_msa:
+      description: Input multiple sequence alignments to be evaluated.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map.
+        - aln:
+            type: file
+            description: Multiple sequence alignment file.
+            pattern: "*.{aln,fasta,fa}"
+  - ch_references:
+      description: Reference alignments used for reference-based evaluation (SP and TC scores).
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each reference alignment.
+        - ref:
+            type: file
+            description: Reference alignment file.
+            pattern: "*.{aln,fasta,fa}"
+  - ch_structures:
+      description: Structural files used for structure-based evaluation (iRMSD).
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each set of structure.
+        - pdb:
+            type: directory
+            description: Folder of structure files in PDB format.
+            pattern: "*/*.pdb"
+output:
+  - eval_summary:
+      description: Combined evaluation summary across all selected metrics (SP, TC, iRMSD, gaps, TCS).
+      structure:
+        - meta:
+            type: map
+            description: Metadata map.
+        - csv:
+            type: file
+            description: Summary table in CSV format with evaluation scores.
+            pattern: "*.csv"
+  - versions:
+      type: file
+      description: File containing software version information for all used tools.
+      pattern: "versions.yml"
+authors:
+  - "@luisasantus"
+  - "@joseespinosa"
+  - "@mirpedrol"
+  - "@lrauschning"
+maintainers:
+  - "@luisasantus"
+  - "@joseespinosa"
diff --git a/subworkflows/local/PREPROCESS/meta.yml b/subworkflows/local/PREPROCESS/meta.yml
new file mode 100644
index 00000000..9ad7ecfb
--- /dev/null
+++ b/subworkflows/local/PREPROCESS/meta.yml
@@ -0,0 +1,46 @@
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
+name: "preprocess_structures"
+description: Preprocess structural template files (e.g. PDB) to make them compatible with alignment tools.
+keywords:
+  - preprocessing
+  - structure
+  - PDB
+  - template
+  - alignment
+  - T-Coffee
+components:
+  - tcoffee/extractfrompdb
+input:
+  - ch_optional_data:
+      description: Optional input structural data to be preprocessed (e.g. template files).
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each input dataset.
+        - files:
+            type: directory
+            description: List of input files (e.g. PDB structures).
+            pattern: "*"
+output:
+  - preprocessed_optionaldata:
+      description: Preprocessed structural data compatible with alignment tools.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map.
+        - formatted_pdb:
+            type: directory
+            description: Folder of reformatted PDB structure files.
+            pattern: "*/*.pdb"
+  - versions:
+      type: file
+      description: File containing software version information.
+      pattern: "versions.yml"
+authors:
+  - "@luisasantus"
+  - "@joseespinosa"
+  - "@mirpedrol"
+  - "@lrauschning"
+maintainers:
+  - "@luisasantus"
+  - "@joseespinosa"
diff --git a/subworkflows/local/STATS/meta.yml b/subworkflows/local/STATS/meta.yml
new file mode 100644
index 00000000..26e0e86f
--- /dev/null
+++ b/subworkflows/local/STATS/meta.yml
@@ -0,0 +1,61 @@
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
+name: "compute_sequence_stats"
+description: Compute sequence- and structure-based statistics, including similarity, general sequence metrics, and collect pLDDT scores.
+keywords:
+  - sequence statistics
+  - sequence similarity
+  - pLDDT
+  - MSA
+  - bioinformatics
+  - sequence analysis
+components:
+  - tcoffee/seqreformat
+  - custom/parse_sim
+  - custom/calculate_seqstats
+  - custom/extract_plddt
+  - csvtk/concat
+  - csvtk/join
+input:
+  - ch_seqs:
+      description: Input sequences to compute similarity and general statistics.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each input sequence file.
+        - fasta:
+            type: file
+            description: Input sequence file in FASTA or alignment format.
+            pattern: "*.{fasta,fa,faa}"
+  - ch_optional_data:
+      description: Optional structural data directory for extracting pLDDT values.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each dataset.
+        - pdbs_dir:
+            type: directory
+            description: Input PDB files directory containing predicted structures.
+            pattern: "*/*.pdb"
+output:
+  - stats_summary:
+      description: Combined summary of sequence similarity, general sequence statistics, and pLDDT results.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map.
+        - csv:
+            type: file
+            description: Summary table in CSV format with computed statistics.
+            pattern: "*.csv"
+  - versions:
+      type: file
+      description: File containing software version information for all used tools.
+      pattern: "versions.yml"
+authors:
+  - "@luisasantus"
+  - "@joseespinosa"
+  - "@mirpedrol"
+  - "@lrauschning"
+maintainers:
+  - "@luisasantus"
+  - "@joseespinosa"

From c0fe37827284d206d95ded86317d77848ded0053 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 13:21:40 +0100
Subject: [PATCH 15/58] update meta.yml

---
 modules.json                                  |  2 +-
 modules/nf-core/multiqc/environment.yml       |  2 +-
 modules/nf-core/multiqc/main.nf               |  4 +-
 .../nf-core/multiqc/tests/main.nf.test.snap   | 24 ++---
 subworkflows/local/ALIGN/meta.yml             | 92 +++++++++++++++++++
 subworkflows/local/EVALUATE/meta.yml          |  2 +-
 subworkflows/local/PREPROCESS/meta.yml        |  2 +-
 subworkflows/local/STATS/meta.yml             |  2 +-
 subworkflows/local/TEMPLATES/meta.yml         | 63 +++++++++++++
 subworkflows/local/VISUALIZATION/meta.yml     | 64 +++++++++++++
 10 files changed, 238 insertions(+), 19 deletions(-)
 create mode 100644 subworkflows/local/TEMPLATES/meta.yml
 create mode 100644 subworkflows/local/VISUALIZATION/meta.yml

diff --git a/modules.json b/modules.json
index f8de2eed..22b04847 100644
--- a/modules.json
+++ b/modules.json
@@ -90,7 +90,7 @@
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "e10b76ca0c66213581bec2833e30d31f239dec0b",
+                        "git_sha": "af27af1be706e6a2bb8fe454175b0cdf77f47b49",
                         "installed_by": ["modules"]
                     },
                     "muscle5/super5": {
diff --git a/modules/nf-core/multiqc/environment.yml b/modules/nf-core/multiqc/environment.yml
index dd513cbd..d02016a0 100644
--- a/modules/nf-core/multiqc/environment.yml
+++ b/modules/nf-core/multiqc/environment.yml
@@ -4,4 +4,4 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - bioconda::multiqc=1.31
+  - bioconda::multiqc=1.32
diff --git a/modules/nf-core/multiqc/main.nf b/modules/nf-core/multiqc/main.nf
index 5288f5cc..c1158fb0 100644
--- a/modules/nf-core/multiqc/main.nf
+++ b/modules/nf-core/multiqc/main.nf
@@ -3,8 +3,8 @@ process MULTIQC {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/ef/eff0eafe78d5f3b65a6639265a16b89fdca88d06d18894f90fcdb50142004329/data' :
-        'community.wave.seqera.io/library/multiqc:1.31--1efbafd542a23882' }"
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/8c/8c6c120d559d7ee04c7442b61ad7cf5a9e8970be5feefb37d68eeaa60c1034eb/data' :
+        'community.wave.seqera.io/library/multiqc:1.32--d58f60e4deb769bf' }"
 
     input:
     path  multiqc_files, stageAs: "?/*"
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap
index 17881d15..a88bafd6 100644
--- a/modules/nf-core/multiqc/tests/main.nf.test.snap
+++ b/modules/nf-core/multiqc/tests/main.nf.test.snap
@@ -2,14 +2,14 @@
     "multiqc_versions_single": {
         "content": [
             [
-                "versions.yml:md5,8968b114a3e20756d8af2b80713bcc4f"
+                "versions.yml:md5,737bb2c7cad54ffc2ec020791dc48b8f"
             ]
         ],
         "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nf-test": "0.9.3",
+            "nextflow": "24.10.4"
         },
-        "timestamp": "2025-09-08T20:57:36.139055243"
+        "timestamp": "2025-10-27T13:33:24.356715"
     },
     "multiqc_stub": {
         "content": [
@@ -17,25 +17,25 @@
                 "multiqc_report.html",
                 "multiqc_data",
                 "multiqc_plots",
-                "versions.yml:md5,8968b114a3e20756d8af2b80713bcc4f"
+                "versions.yml:md5,737bb2c7cad54ffc2ec020791dc48b8f"
             ]
         ],
         "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nf-test": "0.9.3",
+            "nextflow": "24.10.4"
         },
-        "timestamp": "2025-09-08T20:59:15.142230631"
+        "timestamp": "2025-10-27T13:34:11.103619"
     },
     "multiqc_versions_config": {
         "content": [
             [
-                "versions.yml:md5,8968b114a3e20756d8af2b80713bcc4f"
+                "versions.yml:md5,737bb2c7cad54ffc2ec020791dc48b8f"
             ]
         ],
         "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nf-test": "0.9.3",
+            "nextflow": "24.10.4"
         },
-        "timestamp": "2025-09-08T20:58:29.629087066"
+        "timestamp": "2025-10-27T13:34:04.615233"
     }
 }
\ No newline at end of file
diff --git a/subworkflows/local/ALIGN/meta.yml b/subworkflows/local/ALIGN/meta.yml
index e69de29b..059d4a89 100644
--- a/subworkflows/local/ALIGN/meta.yml
+++ b/subworkflows/local/ALIGN/meta.yml
@@ -0,0 +1,92 @@
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
+name: "align"
+description: Compute guide trees if required and perform multiple sequence or structure-based alignments. Compute consensus alignments if specified.
+keywords:
+  - alignment
+  - guide tree
+  - MSA
+  - structure-based alignment
+  - sequence-based alignment
+  - consensus
+components:
+  - compute/trees
+  - clustalo/align
+  - famsa/align
+  - foldmason/easymsa
+  - kalign/align
+  - learnmsa/align
+  - mafft/align
+  - magus/align
+  - mtmalign/align
+  - muscle5/super5
+  - tcoffee/align
+  - tcoffee/regressive
+  - tcoffee/consensus
+  - upp/align
+  - pigz/compress
+input:
+  - ch_fastas:
+      description: Input FASTA sequences for which alignments will be computed.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each FASTA input.
+        - fastas:
+            type: file
+            description: Input FASTA file(s).
+            pattern: "*.{fasta,fa,faa}"
+  - ch_tools:
+      description: Channel specifying both the guide tree and aligner tools with their respective arguments.
+      structure:
+        - meta_tree:
+            type: map
+            description: Metadata specifying guide tree computation tool (e.g. FAMSA, CLUSTALO, MAFFT) and parameters.
+        - meta_aligner:
+            type: map
+            description: Metadata specifying alignment tool (e.g. TCOFFEE, MAFFT, MUSCLE5) and parameters.
+  - ch_optional_data:
+      description: Optional data for structure-based alignments (e.g., PDB templates or dependencies).
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for optional data.
+        - files:
+            type: file
+            description: List of optional structural data files.
+            pattern: "*.{pdb}"
+  - compress:
+      type: boolean
+      description: Whether to compress output alignments using Pigz.
+output:
+  - msa:
+      description: Multiple sequence alignments generated by the specified tools.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map including aligner and arguments.
+        - msa:
+            type: file
+            description: Output alignment file.
+            pattern: "*.{aln,fasta,fas,msa,fa,gz}"
+  - trees:
+      description: Computed guide trees, used for tree-guided alignments.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map including tree computation tool.
+        - tree:
+            type: file
+            description: Guide tree file.
+            pattern: "*.{nwk,tree}"
+  - versions:
+      type: file
+      description: File containing software version information for all tools used.
+      pattern: "versions.yml"
+authors:
+  - "@luisasantus"
+  - "@joseespinosa"
+  - "@mirpedrol"
+  - "@lrauschning"
+maintainers:
+  - "@luisasantus"
+  - "@joseespinosa"
diff --git a/subworkflows/local/EVALUATE/meta.yml b/subworkflows/local/EVALUATE/meta.yml
index d39ae441..4e480a3c 100644
--- a/subworkflows/local/EVALUATE/meta.yml
+++ b/subworkflows/local/EVALUATE/meta.yml
@@ -1,5 +1,5 @@
 # yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
-name: "evaluate_msa_quality"
+name: "evaluate"
 description: Evaluate the quality of multiple sequence alignments (MSAs) using reference-, structure-, and intrinsic-based metrics.
 keywords:
   - MSA
diff --git a/subworkflows/local/PREPROCESS/meta.yml b/subworkflows/local/PREPROCESS/meta.yml
index 9ad7ecfb..c31cd050 100644
--- a/subworkflows/local/PREPROCESS/meta.yml
+++ b/subworkflows/local/PREPROCESS/meta.yml
@@ -1,5 +1,5 @@
 # yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
-name: "preprocess_structures"
+name: "preprocess"
 description: Preprocess structural template files (e.g. PDB) to make them compatible with alignment tools.
 keywords:
   - preprocessing
diff --git a/subworkflows/local/STATS/meta.yml b/subworkflows/local/STATS/meta.yml
index 26e0e86f..03e7b61f 100644
--- a/subworkflows/local/STATS/meta.yml
+++ b/subworkflows/local/STATS/meta.yml
@@ -1,5 +1,5 @@
 # yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
-name: "compute_sequence_stats"
+name: "stats"
 description: Compute sequence- and structure-based statistics, including similarity, general sequence metrics, and collect pLDDT scores.
 keywords:
   - sequence statistics
diff --git a/subworkflows/local/TEMPLATES/meta.yml b/subworkflows/local/TEMPLATES/meta.yml
new file mode 100644
index 00000000..7ad1137f
--- /dev/null
+++ b/subworkflows/local/TEMPLATES/meta.yml
@@ -0,0 +1,63 @@
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
+name: "templates"
+description: Prepares templates by either using existing ones or generating new templates from optional data.
+keywords:
+  - template generation
+  - template preparation
+  - optional data
+components:
+  - custom/create_template
+input:
+  - ch_optional_data:
+      description: Channel containing optional input data for which templates may be created.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each dataset.
+        - optional_data:
+            type: file
+            description: Optional data file (e.g., input data used to generate a template).
+            pattern: "*"
+  - ch_templates:
+      description: Channel containing existing templates.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each dataset.
+        - template:
+            type: file
+            description: Template file associated with the dataset.
+            pattern: "*.txt"
+  - suffix:
+      description: Suffix string used for identifying data to be used for template creation.
+      type: string
+output:
+  - optional_data_template:
+      description: Channel combining optional data with either existing or newly created templates.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each dataset.
+        - optional_data:
+            type: file
+            description: Input optional data file.
+            pattern: "*"
+        - template:
+            type: file
+            description: Corresponding template file.
+            pattern: "*.txt"
+  - versions:
+      description: Channel containing software version information from CREATE_TEMPLATE.
+      structure:
+        - versions:
+            type: file
+            description: Version information file.
+            pattern: "versions.yml"
+authors:
+  - "@luisasantus"
+  - "@joseespinosa"
+  - "@mirpedrol"
+  - "@lrauschning"
+maintainers:
+  - "@luisasantus"
+  - "@joseespinosa"
diff --git a/subworkflows/local/VISUALIZATION/meta.yml b/subworkflows/local/VISUALIZATION/meta.yml
new file mode 100644
index 00000000..0112be1e
--- /dev/null
+++ b/subworkflows/local/VISUALIZATION/meta.yml
@@ -0,0 +1,64 @@
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/subworkflows/yaml-schema.json
+name: "visualization"
+description: Generate structure-based visual reports by integrating MSAs, trees, and optional structural data.
+keywords:
+  - visualization
+  - FoldMason
+  - structural bioinformatics
+  - multiple sequence alignment
+  - tree analysis
+  - LDDT
+  - comparative analysis
+components:
+  - foldmason/createdb
+  - foldmason/msa2lddtreport
+input:
+  - ch_msa:
+      description: Channel containing multiple sequence alignment (MSA) files.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each MSA dataset.
+        - msa:
+            type: file
+            description: Input MSA file in FASTA or alignment format.
+            pattern: "*.{fasta,fa,aln,faa}"
+  - ch_trees:
+      description: Channel containing phylogenetic tree files corresponding to MSAs.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each dataset.
+        - tree:
+            type: file
+            description: Input tree file in Newick or similar format.
+            pattern: "*.{nwk,tree,txt}"
+  - ch_optional_data:
+      description: Optional structural data directory.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each dataset.
+        - pdbs_dir:
+            type: directory
+            description: Input directory containing PDB or predicted structure files.
+            pattern: "*/*.pdb"
+output:
+  - html:
+      description: HTML visualization reports generated by FoldMason.
+      structure:
+        - meta:
+            type: map
+            description: Metadata map for each dataset.
+        - html:
+            type: file
+            description: Output visualization report in HTML format.
+            pattern: "*.html"
+  - versions:
+      type: file
+      description: File containing software version information.
+      pattern: "versions.yml"
+authors:
+  - "@luisasantus"
+maintainers:
+  - "@luisasantus"

From a066cc39ba66364e7a0a3d0587b84c2b6ebab434 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 13:23:50 +0100
Subject: [PATCH 16/58] remove nftest log files

---
 .gitignore                                    |    1 +
 .../769ef9cb3e09a5479af8ae24f9f6ea54.json     |  158 --
 .../nft-utils/0.0.3/nft-utils-0.0.3.jar       |  Bin 349612 -> 0 bytes
 .../meta/nextflow.log                         |   16 -
 .../meta/params.json                          |    1 -
 .../meta/std.err                              |    0
 .../meta/std.out                              |    0
 .../meta/nextflow.log                         | 1043 -------------
 .../meta/params.json                          |    1 -
 .../meta/std.err                              |    1 -
 .../meta/std.out                              |   50 -
 .../meta/trace.csv                            |  100 --
 ...rgs-default_REGRESSIVE-args-default.aln.gz |  Bin 808 -> 0 bytes
 ...pgma_-medoidtree_FAMSA-args-default.aln.gz |  Bin 821 -> 0 bytes
 ...MSA-args-default_MAGUS-args-default.aln.gz |  Bin 802 -> 0 bytes
 ...default_REGRESSIVE-args-default_tcs.scores |    2 -
 ...gs-default_REGRESSIVE-args-default_tcs.tcs |   78 -
 ..._-medoidtree_FAMSA-args-default_tcs.scores |    2 -
 ...gma_-medoidtree_FAMSA-args-default_tcs.tcs |   78 -
 ...args-default_MAGUS-args-default_tcs.scores |    2 -
 ...SA-args-default_MAGUS-args-default_tcs.tcs |   78 -
 ...2footprint_report_2025-10-17_15-37-58.html | 1385 -----------------
 ...2footprint_summary_2025-10-17_15-37-58.txt |   29 -
 ...co2footprint_trace_2025-10-17_15-37-58.txt |  100 --
 ...plesequencealign_software_mqc_versions.yml |   67 -
 .../params_2025-10-17_15-38-07.json           |   57 -
 .../stats/sequences/perc_sim/toxin-ref.txt    |  426 -----
 .../sequences/seqstats/toxin-ref_seqstats.csv |   21 -
 .../toxin-ref_CLUSTALO-args-default.dnd       |   78 -
 ...n-ref_FAMSA-args--gt_upgma_-medoidtree.dnd |    1 -
 .../toxin-ref_FAMSA-args-default.dnd          |    1 -
 .../toxin-ref_MAFFT-args-default.dnd          |   41 -
 .../meta/nextflow.log                         |  759 ---------
 .../meta/params.json                          |    1 -
 .../meta/std.err                              |    1 -
 .../meta/std.out                              |   29 -
 .../meta/trace.csv                            |   12 -
 ...2footprint_report_2025-10-17_13-11-11.html | 1364 ----------------
 ...2footprint_summary_2025-10-17_13-11-11.txt |   29 -
 ...co2footprint_trace_2025-10-17_13-11-11.txt |   12 -
 ...plesequencealign_software_mqc_versions.yml |    7 -
 .../params_2025-10-17_13-11-21.json           |   57 -
 .../sequences/seqstats/toxin-ref_seqstats.csv |   21 -
 .../toxin-ref_CLUSTALO-args-default.dnd       |   78 -
 44 files changed, 1 insertion(+), 6186 deletions(-)
 delete mode 100644 .nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json
 delete mode 100644 .nf-test/plugins/nft-utils/0.0.3/nft-utils-0.0.3.jar
 delete mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log
 delete mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json
 delete mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.err
 delete mode 100644 .nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.out
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd
 delete mode 100644 .nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
 delete mode 100644 .nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd

diff --git a/.gitignore b/.gitignore
index bb092826..401c2bd6 100644
--- a/.gitignore
+++ b/.gitignore
@@ -8,3 +8,4 @@ testing*
 *.pyc
 null/
 seatoxin*
+.nf-test*
diff --git a/.nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json b/.nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json
deleted file mode 100644
index 3bea5344..00000000
--- a/.nf-test/plugins/769ef9cb3e09a5479af8ae24f9f6ea54.json
+++ /dev/null
@@ -1,158 +0,0 @@
-[{
-  "id": "nft-fasta",
-  "latest": "1.0.0",
-  "url": "https://github.com/askimed/nft-fasta",
-  "github": "askimed/nft-fasta",
-  "description": "Provides support for FASTA files.",
-  "author": "Lukas Forer",
-  "keywords": [],
-  "releases": [{
-    "version": "1.0.0",
-    "url": "https://github.com/askimed/nft-fasta/releases/download/v1.0.0/nft-fasta-1.0.0.jar"
-  }]
-},{
-  "id": "nft-vcf",
-  "latest": "1.0.7",
-  "url": "https://github.com/seppinho/nft-vcf",
-  "github": "seppinho/nft-vcf",
-  "description": "Provides support for VCF files.",
-  "author": "Sebastian Schönherr",
-  "keywords": [],
-  "releases": [{
-    "version": "1.0.2",
-    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.2/nft-vcf-1.0.2-jar-with-dependencies.jar"
-  },{
-    "version": "1.0.4",
-    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.4/nft-vcf-1.0.4.jar"
-  },{
-    "version": "1.0.5",
-    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.5/nft-vcf-1.0.5.jar"
-  },{
-    "version": "1.0.6",
-    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.6/nft-vcf-1.0.6.jar"
-  },{
-    "version": "1.0.7",
-    "url": "https://github.com/seppinho/nft-vcf/releases/download/v1.0.7/nft-vcf-1.0.7.jar"
-  }]
-},{
-  "id": "nft-bam",
-  "latest": "0.6.0",
-  "url": "https://nvnieuwk.github.io/nft-bam",
-  "github": "nvnieuwk/nft-bam",
-  "description": "Provides some helper functionality for handling SAM/BAM/CRAM files during tests",
-  "author": "Nicolas Vannieuwkerke",
-  "keywords": [],
-  "releases": [{
-    "version": "0.1.0",
-    "url": "https://github.com/nvnieuwk/nft-bam/releases/download/0.1.0/nft-bam-0.1.0.jar"
-  },{
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diff --git a/.nf-test/plugins/nft-utils/0.0.3/nft-utils-0.0.3.jar b/.nf-test/plugins/nft-utils/0.0.3/nft-utils-0.0.3.jar
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diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log
deleted file mode 100644
index f277b1f9..00000000
--- a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log
+++ /dev/null
@@ -1,16 +0,0 @@
-Oct-17 15:37:27.022 [main] DEBUG nextflow.cli.Launcher - $> nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json -ansi-log false -profile test,docker -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/work
-Oct-17 15:37:27.127 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 25.04.6
-Oct-17 15:37:27.160 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/luisasantus/.nextflow/plugins; core-plugins: nf-amazon@2.15.0,nf-azure@1.16.0,nf-cloudcache@0.4.3,nf-codecommit@0.2.3,nf-console@1.2.1,nf-google@1.21.1,nf-k8s@1.0.0,nf-tower@1.11.4,nf-wave@1.12.1
-Oct-17 15:37:27.194 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
-Oct-17 15:37:27.195 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
-Oct-17 15:37:27.201 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
-Oct-17 15:37:27.218 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
-Oct-17 15:37:27.250 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:27.258 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:27.258 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-Oct-17 15:37:27.260 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:27.261 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:27.261 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-Oct-17 15:37:27.318 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /home/luisasantus/.nextflow/secrets/store.json
-Oct-17 15:37:27.325 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@f9b5552] - activable => nextflow.secret.LocalSecretsProvider@f9b5552
-Oct-17 15:37:27.360 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json
deleted file mode 100644
index 31582cef..00000000
--- a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/params.json
+++ /dev/null
@@ -1 +0,0 @@
-{"outdir":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/output"}
\ No newline at end of file
diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.err b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.err
deleted file mode 100644
index e69de29b..00000000
diff --git a/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.out b/.nf-test/tests/29aa33c17b1c67860129e2eaedbf02e8/meta/std.out
deleted file mode 100644
index e69de29b..00000000
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log
deleted file mode 100644
index 3eb0b1ea..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log
+++ /dev/null
@@ -1,1043 +0,0 @@
-Oct-17 15:37:55.629 [main] DEBUG nextflow.cli.Launcher - $> nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json -ansi-log false -profile test,docker -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work
-Oct-17 15:37:55.724 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 25.04.6
-Oct-17 15:37:55.756 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/luisasantus/.nextflow/plugins; core-plugins: nf-amazon@2.15.0,nf-azure@1.16.0,nf-cloudcache@0.4.3,nf-codecommit@0.2.3,nf-console@1.2.1,nf-google@1.21.1,nf-k8s@1.0.0,nf-tower@1.11.4,nf-wave@1.12.1
-Oct-17 15:37:55.788 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
-Oct-17 15:37:55.789 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
-Oct-17 15:37:55.793 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
-Oct-17 15:37:55.813 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
-Oct-17 15:37:55.854 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:55.859 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:55.859 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-Oct-17 15:37:55.861 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:55.861 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 15:37:55.862 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-Oct-17 15:37:55.906 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /home/luisasantus/.nextflow/secrets/store.json
-Oct-17 15:37:55.911 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@f9b5552] - activable => nextflow.secret.LocalSecretsProvider@f9b5552
-Oct-17 15:37:55.944 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
-Oct-17 15:37:58.604 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
-Oct-17 15:37:59.194 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test,docker`
-Oct-17 15:37:59.239 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [bih, cfc_dev, uzl_omics, ifb_core, embl_hd, denbi_qbic, alice, mjolnir_globe, uppmax, giga, incliva, ilifu, ki_luria, uge, icr_alma, rosalind_uge, test_conda, lugh, mccleary, unibe_ibu, vai, czbiohub_aws, jax, roslin, tes, test_tiny, scw, unc_longleaf, tigem, tubingen_apg, apollo, ipop_up, vsc_calcua, pdc_kth, ceci_nic5, ccga_cau, humantechnopole, stjude, daisybio, eddie, medair, biowulf, apptainer, bi, bigpurple, adcra, cedars, pawsey_setonix, vsc_kul_uhasselt, pawsey_nimbus, ucl_myriad, utd_ganymede, charliecloud, fred_hutch, seattlechildrens, icr_davros, ceres, munin, rosalind, hasta, cfc, emulate_amd64, uzh, shu_bmrc, ebi_codon_slurm, ebc, ccga_dx, crick, test_pdb, ku_sund_danhead, marvin, shifter, biohpc_gen, mana, mamba, york_viking, unc_lccc, wehi, test_no_sheet, awsbatch, wustl_htcf, arcc, ceci_dragon2, imperial, maestro, software_license, cannon, genotoul, nci_gadi, abims, eva_grace, janelia, nu_genomics, googlebatch, oist, sahmri, kaust, alliance_canada, arm64, mpcdf, leicester, vsc_ugent, create, sage, cambridge, jex, podman, ebi_codon, cheaha, xanadu, nyu_hpc, test, marjorie, computerome, ucd_sonic, gpu, seg_globe, mssm, sanger, dkfz, bluebear, pasteur, einstein, ethz_euler, m3c, test_full, imb, ucl_cscluster, tuos_stanage, azurebatch, hki, seadragon, crukmi, csiro_petrichor, qmul_apocrita, wave, docker, engaging, gis, hypatia, psmn, eva, unity, cropdiversityhpc, nygc, easy_deploy, fgcz, conda, crg, singularity, mpcdf_viper, pe2, dirac, self_hosted_runner, tufts, uw_hyak_pedslabs, binac2, debug, genouest, cbe, unsw_katana, utd_juno, phoenix, seawulf, uod_hpc, fub_curta, lovelace, uct_hpc, aws_tower, binac, fsu_draco]
-Oct-17 15:37:59.290 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default
-Oct-17 15:37:59.312 [main] INFO  nextflow.cli.CmdRun - Launching `/home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf` [ecstatic_pesquet] DSL2 - revision: af24e956f9
-Oct-17 15:37:59.313 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins declared=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2]
-Oct-17 15:37:59.315 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
-Oct-17 15:37:59.317 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2, nf-tower@1.11.4]
-Oct-17 15:37:59.320 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-schema version: 2.5.1
-Oct-17 15:37:59.335 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-schema@2.5.1' resolved
-Oct-17 15:37:59.335 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-schema@2.5.1'
-Oct-17 15:37:59.344 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-schema@2.5.1
-Oct-17 15:37:59.344 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-co2footprint version: 1.0.0
-Oct-17 15:37:59.348 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-co2footprint@1.0.0' resolved
-Oct-17 15:37:59.349 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-co2footprint@1.0.0'
-Oct-17 15:37:59.351 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-co2footprint@1.0.0
-Oct-17 15:37:59.352 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-prov version: 1.2.2
-Oct-17 15:37:59.354 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-prov@1.2.2' resolved
-Oct-17 15:37:59.354 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-prov@1.2.2'
-Oct-17 15:37:59.357 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-prov@1.2.2
-Oct-17 15:37:59.357 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-tower version: 1.11.4
-Oct-17 15:37:59.359 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-tower@1.11.4' resolved
-Oct-17 15:37:59.360 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-tower@1.11.4'
-Oct-17 15:37:59.375 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-tower@1.11.4
-Oct-17 15:37:59.445 [main] DEBUG nextflow.Session - Session UUID: fbc329ea-376b-4651-a144-fe8ddfd305b1
-Oct-17 15:37:59.446 [main] DEBUG nextflow.Session - Run name: ecstatic_pesquet
-Oct-17 15:37:59.446 [main] DEBUG nextflow.Session - Executor pool size: 8
-Oct-17 15:37:59.459 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null
-Oct-17 15:37:59.467 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
-Oct-17 15:37:59.529 [main] DEBUG nextflow.cli.CmdRun - 
-  Version: 25.04.6 build 5954
-  Created: 01-07-2025 11:27 UTC (13:27 CEST)
-  System: Linux 5.15.0-134-generic
-  Runtime: Groovy 4.0.26 on OpenJDK 64-Bit Server VM 21.0.7+6-Ubuntu-0ubuntu120.04
-  Encoding: UTF-8 (UTF-8)
-  Process: 3939830@luisasantus-HP-EliteDesk-800-G5-TWR [127.0.1.1]
-  CPUs: 8 - Mem: 31.1 GB (532.3 MB) - Swap: 2 GB (0)
-Oct-17 15:37:59.584 [main] DEBUG nextflow.Session - Work-dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work [ext2/ext3]
-Oct-17 15:37:59.666 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
-Oct-17 15:37:59.700 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
-Oct-17 15:37:59.719 [main] DEBUG nextflow.Session - Observer factory: CO2FootprintFactory
-Oct-17 15:37:59.776 [main] INFO  n.co2footprint.CO2FootprintFactory - nf-co2footprint plugin  ~  version 1.0.0
-Oct-17 15:37:59.776 [main] INFO  n.co2footprint.CO2FootprintFactory - 🔕 Repeated task-specific messages (🔁) are only logged once in the console. Further occurrences are logged at DEBUG level, appearing only in the `.nextflow.log` file.
-Oct-17 15:38:01.072 [main] WARN  n.c.DataContainers.CIValueComputer - No location provided. Attempting to retrieve GLOBAL carbon intensity value.
-Oct-17 15:38:01.077 [main] INFO  n.c.DataContainers.CIDataMatrix - Using carbon intensity for GLOBAL from fallback table: 480.0 gCO₂eq/kWh.
-Oct-17 15:38:01.078 [main] DEBUG n.co2footprint.CO2FootprintConfig - No executor found in config under process.executor.
-Oct-17 15:38:01.106 [main] DEBUG nextflow.Session - Observer factory: ProvObserverFactory
-Oct-17 15:38:01.153 [main] DEBUG nextflow.Session - Observer factory: TowerFactory
-Oct-17 15:38:01.160 [main] DEBUG nextflow.Session - Observer factory (v2): LinObserverFactory
-Oct-17 15:38:01.168 [main] DEBUG nextflow.Session - Observer factory (v2): ValidationObserverFactory
-Oct-17 15:38:01.224 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
-Oct-17 15:38:01.251 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 9; maxThreads: 1000
-Oct-17 15:38:01.342 [main] DEBUG nextflow.Session - Session start
-Oct-17 15:38:01.345 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
-Oct-17 15:38:01.347 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow started -- co2e outputs: [co2eTrace:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt, co2eSummary:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt, co2eReport:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html]
-Oct-17 15:38:01.539 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
-Oct-17 15:38:02.171 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
-Oct-17 15:38:02.188 [main] DEBUG n.validation.config.ValidationConfig - Set `validation.monochromeLogs` to true due to the ANSI log settings.
-Oct-17 15:38:02.192 [main] DEBUG n.validation.config.ValidationConfig - Added the following parameters to the ignored parameters: [genomes, fasta, igenomes_base, genome]
-Oct-17 15:38:03.045 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
-Oct-17 15:38:03.046 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
-Oct-17 15:38:03.047 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
-Oct-17 15:38:03.053 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
-Oct-17 15:38:03.055 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
-Oct-17 15:38:07.059 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
-Oct-17 15:38:07.060 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
-Oct-17 15:38:07.061 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
-Oct-17 15:38:07.063 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
-Oct-17 15:38:07.064 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
-Oct-17 15:38:07.316 [main] INFO  nextflow.Nextflow - 
-------------------------------------------------------
-                                        ,--./,-.
-        ___     __   __   __   ___     /,-._.--~'
-  |\ | |__  __ /  ` /  \ |__) |__         }  {
-  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
-                                        `._,._,'
-  nf-core/multiplesequencealign 1.2.0dev
-------------------------------------------------------
-
-Oct-17 15:38:07.351 [main] INFO  nextflow.Nextflow - Basic Input/output options
-  input                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv
-  outdir                      : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output
-
-Tools input options
-  tools                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv
-
-Align options
-  build_consensus             : true
-
-Stats options
-  calc_sim                    : true
-  calc_seq_stats              : true
-  extract_plddt               : true
-
-Eval options
-  calc_irmsd                  : true
-  calc_tcs                    : true
-
-Reports options
-  shiny_app                   : /home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app
-
-Institutional config options
-  config_profile_name         : Test profile
-  config_profile_description  : Minimal test dataset to check pipeline function
-
-Generic options
-  pipelines_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign
-  trace_report_suffix         : 2025-10-17_15-37-58
-
-Core Nextflow options
-  runName                     : ecstatic_pesquet
-  containerEngine             : docker
-  launchDir                   : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6
-  workDir                     : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work
-  projectDir                  : /home/luisasantus/Desktop/multiplesequencealign
-  userName                    : luisasantus
-  profile                     : test,docker
-  configFiles                 : /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-
-!! Only displaying parameters that differ from the pipeline defaults !!
-------------------------------------------------------
-Oct-17 15:38:07.352 [main] INFO  nextflow.Nextflow - 
-* The pipeline
-    https://doi.org/10.5281/zenodo.13889386
-
-* The nf-core framework
-    https://doi.org/10.1038/s41587-020-0439-x
-
-* Software dependencies
-    https://github.com/nf-core/multiplesequencealign/blob/master/CITATIONS.md
-
-Oct-17 15:38:07.358 [main] DEBUG n.v.parameters.ParameterValidator - Starting parameters validation
-Oct-17 15:38:07.753 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv
-Oct-17 15:38:09.486 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv' passed!
-Oct-17 15:38:09.866 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv
-Oct-17 15:38:09.934 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv' passed!
-Oct-17 15:38:10.080 [main] WARN  n.v.logging.ValidationLogger - The following invalid input values have been detected:
-
-* --modules_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/
-
-
-Oct-17 15:38:10.083 [main] DEBUG n.v.parameters.ParameterValidator - Finishing parameters validation
-Oct-17 15:38:11.312 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 15:38:11.317 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 15:38:11.319 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 15:38:11.327 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.327 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.337 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
-Oct-17 15:38:11.344 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=8; memory=31.1 GB; capacity=8; pollInterval=100ms; dumpInterval=5m
-Oct-17 15:38:11.347 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
-Oct-17 15:38:11.375 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.424 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 15:38:11.426 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 15:38:11.428 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 15:38:11.429 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.430 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.432 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.448 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 15:38:11.451 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 15:38:11.452 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 15:38:11.456 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.456 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.457 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.474 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 15:38:11.475 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 15:38:11.475 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 15:38:11.477 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.477 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.477 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.512 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 15:38:11.513 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CREATE_TEMPLATE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 15:38:11.516 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 15:38:11.518 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 15:38:11.521 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.521 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.522 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.561 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 15:38:11.563 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 15:38:11.564 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_SEQREFORMAT_SIM` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 15:38:11.569 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 15:38:11.571 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 15:38:11.574 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.574 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.575 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.591 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 15:38:11.592 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 15:38:11.593 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 15:38:11.594 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.595 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.595 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.620 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 15:38:11.621 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 15:38:11.622 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SIMSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 15:38:11.623 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 15:38:11.624 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 15:38:11.626 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.626 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.627 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.643 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 15:38:11.643 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALCULATE_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 15:38:11.644 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 15:38:11.645 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 15:38:11.648 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.649 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.650 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.667 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 15:38:11.668 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 15:38:11.669 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 15:38:11.670 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 15:38:11.670 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 15:38:11.673 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.673 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.674 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 15:38:11.691 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:EXTRACT_PLDDT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 15:38:11.692 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 15:38:11.692 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 15:38:11.694 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.694 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.695 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.714 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 15:38:11.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 15:38:11.718 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 15:38:11.719 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 15:38:11.721 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.721 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.722 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.758 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 15:38:11.760 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 15:38:11.761 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 15:38:11.762 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 15:38:11.762 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 15:38:11.765 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.766 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.767 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 15:38:11.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 15:38:11.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 15:38:11.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 15:38:11.811 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.811 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.811 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.826 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 15:38:11.826 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 15:38:11.827 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 15:38:11.828 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 15:38:11.829 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.829 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.830 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 15:38:11.846 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 15:38:11.847 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 15:38:11.848 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 15:38:11.850 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.851 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.852 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.939 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 15:38:11.940 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 15:38:11.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 15:38:11.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 15:38:11.943 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.943 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.943 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:11.968 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 15:38:11.969 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 15:38:11.970 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 15:38:11.971 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 15:38:11.972 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:11.973 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:11.974 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.002 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 15:38:12.003 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 15:38:12.004 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 15:38:12.005 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 15:38:12.008 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.008 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.009 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.029 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 15:38:12.030 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:LEARNMSA_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 15:38:12.031 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 15:38:12.034 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 15:38:12.037 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.038 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.039 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.064 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 15:38:12.066 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 15:38:12.067 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 15:38:12.068 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 15:38:12.071 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.071 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.072 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.094 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 15:38:12.095 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 15:38:12.095 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 15:38:12.096 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 15:38:12.100 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.100 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.101 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.134 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 15:38:12.135 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 15:38:12.136 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 15:38:12.136 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 15:38:12.139 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 15:38:12.141 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.141 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.142 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.176 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 15:38:12.177 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 15:38:12.178 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 15:38:12.178 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 15:38:12.184 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.184 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.186 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.213 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 15:38:12.215 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 15:38:12.216 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 15:38:12.217 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 15:38:12.218 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 15:38:12.220 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.220 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.220 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.241 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 15:38:12.242 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 15:38:12.242 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 15:38:12.243 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 15:38:12.244 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.244 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.245 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.281 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 15:38:12.282 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 15:38:12.283 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 15:38:12.283 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 15:38:12.284 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 15:38:12.285 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 15:38:12.288 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.288 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.292 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.320 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 15:38:12.320 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MTMALIGN_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 15:38:12.321 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 15:38:12.324 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 15:38:12.329 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.329 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.330 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.380 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 15:38:12.384 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 15:38:12.386 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 15:38:12.388 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 15:38:12.390 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 15:38:12.392 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.394 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.395 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.446 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 15:38:12.450 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 15:38:12.451 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONSENSUS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 15:38:12.452 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 15:38:12.453 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 15:38:12.455 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.456 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.457 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.480 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 15:38:12.484 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PIGZ_COMPRESS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 15:38:12.484 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 15:38:12.485 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 15:38:12.488 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.488 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.489 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.520 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 15:38:12.522 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 15:38:12.522 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 15:38:12.522 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 15:38:12.523 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 15:38:12.525 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.525 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.526 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.544 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 15:38:12.545 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 15:38:12.546 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 15:38:12.546 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 15:38:12.546 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 15:38:12.549 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.549 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.550 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.559 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 15:38:12.560 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 15:38:12.560 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 15:38:12.560 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 15:38:12.561 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 15:38:12.562 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.562 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.563 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.577 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 15:38:12.578 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 15:38:12.579 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 15:38:12.579 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 15:38:12.579 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 15:38:12.582 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.583 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.584 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.595 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 15:38:12.596 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALC_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 15:38:12.596 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 15:38:12.596 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 15:38:12.599 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.599 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.600 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.612 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 15:38:12.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 15:38:12.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 15:38:12.613 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 15:38:12.614 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 15:38:12.616 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.616 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.617 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.636 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 15:38:12.636 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 15:38:12.637 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 15:38:12.637 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 15:38:12.639 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.639 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.639 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.650 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 15:38:12.651 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PARSE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 15:38:12.652 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 15:38:12.654 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 15:38:12.656 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.656 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.657 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.671 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 15:38:12.672 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 15:38:12.673 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 15:38:12.673 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 15:38:12.674 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 15:38:12.675 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.675 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.675 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.689 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 15:38:12.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 15:38:12.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 15:38:12.690 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 15:38:12.692 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.692 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.693 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.713 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 15:38:12.714 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 15:38:12.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 15:38:12.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 15:38:12.717 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 15:38:12.719 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.720 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.720 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.758 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 15:38:12.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 15:38:12.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 15:38:12.759 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 15:38:12.760 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 15:38:12.761 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.761 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.762 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.788 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 15:38:12.789 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 15:38:12.790 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 15:38:12.790 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 15:38:12.791 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 15:38:12.792 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.792 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.793 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 15:38:12.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PREPARE_SHINY` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 15:38:12.809 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 15:38:12.810 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 15:38:12.812 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.812 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.812 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.844 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 15:38:12.844 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 15:38:12.845 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 15:38:12.846 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.847 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.848 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.869 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 15:38:12.870 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:FOLDMASON_MSA2LDDTREPORT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 15:38:12.870 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 15:38:12.871 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 15:38:12.872 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.872 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.872 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT': maxForks=0; fair=false; array=0
-Oct-17 15:38:12.975 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 15:38:12.976 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 15:38:12.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 15:38:12.979 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:12.979 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:12.979 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC': maxForks=0; fair=false; array=0
-Oct-17 15:38:13.020 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 15:38:13.021 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MULTIQC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 15:38:13.021 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 15:38:13.022 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 15:38:13.023 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 15:38:13.023 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 15:38:13.024 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC': maxForks=0; fair=false; array=0
-Oct-17 15:38:13.054 [main] DEBUG nextflow.Session - Config process names validation disabled as requested
-Oct-17 15:38:13.057 [main] DEBUG nextflow.Session - Igniting dataflow network (90)
-Oct-17 15:38:13.059 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 15:38:13.059 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 15:38:13.059 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 15:38:13.061 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 15:38:13.062 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 15:38:13.063 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 15:38:13.065 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 15:38:13.065 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 15:38:13.066 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 15:38:13.086 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 15:38:13.086 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 15:38:13.086 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 15:38:13.089 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 15:38:13.090 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 15:38:13.091 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files:
-  Script_8251928f53ed1e0e: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/multiqc/main.nf
-  Script_ec6d7c00dbe116f1: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/guidetree/main.nf
-  Script_57af96f2e16e9c7d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_multiqc/main.nf
-  Script_63ce457e8ec7f8af: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/upp/align/main.nf
-  Script_524f120a05221479: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/kalign/align/main.nf
-  Script_09ffe02c0c021b08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/irmsd/main.nf
-  Script_8425f66c1fadad9f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/regressive/main.nf
-  Script_5729c854db3bca08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/align/main.nf
-  Script_bad8f411f3f6ffa1: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
-  Script_48b407151e6b24a5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/easymsa/main.nf
-  Script_7d22c6ec5ed4460e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/ALIGN/main.nf
-  Script_eda0c798b2c6de8e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/EVALUATE/main.nf
-  Script_fca9eae676f246fb: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/TEMPLATES/main.nf
-  Script_2a3123de5fac596c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/untar/main.nf
-  Script_35a72570ce85b0d1: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/pigz/compress/main.nf
-  Script_941048245083b1e2: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/concat/main.nf
-  Script_e0e9c77b2ae8e9b3: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/pdbtofasta/main.nf
-  Script_e823de7f89fcdd71: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/STATS/main.nf
-  Script_f0051a4616b96900: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/tcs/main.nf
-  Script_0dd893b3b9df6f1f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/guidetree/main.nf
-  Script_328b81a9521dfef3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/learnmsa/align/main.nf
-  Script_45033c525735daa5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mtmalign/align/main.nf
-  Script_7b4cef2b5410f808: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/magus/align/main.nf
-  Script_6bd16897fec1d5bc: /home/luisasantus/Desktop/multiplesequencealign/main.nf
-  Script_6cb5b9c70ca32fe9: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/msa2lddtreport/main.nf
-  Script_08462a39a86bdf01: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/PREPROCESS/main.nf
-  Script_32fec9f5ca14d441: /home/luisasantus/Desktop/multiplesequencealign/workflows/multiplesequencealign.nf
-  Script_2388659803e1fbf6: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/align/main.nf
-  Script_4a2e0f0221aa895f: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/VISUALIZATION/main.nf
-  Script_c468d244616aec2a: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/COMPUTE_TREES/main.nf
-  Script_5c4e8d4051efa81e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfcore_pipeline/main.nf
-  Script_0f4f66d244e61313: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/align/main.nf
-  Script_44d8335569596992: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/guidetree/main.nf
-  Script_a64a54a01f8015c7: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfschema_plugin/main.nf
-  Script_b93ee6233f5bb49c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/muscle5/super5/main.nf
-  Script_bca4a30519de91f7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/join/main.nf
-  Script_5eaf85488d283048: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/extractfrompdb/main.nf
-  Script_4f612cfd8c52e8cd: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nextflow_pipeline/main.nf
-  Script_71bf7e9900254bc9: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_seqstats/main.nf
-  Script_e1b81db8f4ff2371: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_sim/main.nf
-  Script_2cabea47677e033a: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/create_template/main.nf
-  Script_dcd3c7cec52a7525: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/align/main.nf
-  Script_fb9cf57a2c68281a: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/consensus/main.nf
-  Script_fd6913e0285b949d: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/fastavalidator/main.nf
-  Script_6ce6839019cc82da: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_shiny/main.nf
-  Script_35f6720269e842a7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/seqreformat/main.nf
-  Script_33c0168aace67863: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_gaps/main.nf
-  Script_008f1bb55a32fd55: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/createdb/main.nf
-  Script_9621fcdbdfd33417: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/extract_plddt/main.nf
-  Script_f3636f12629b7eb3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/alncompare/main.nf
-  Script_417dd392a2b3179d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_irmsd/main.nf
-Oct-17 15:38:13.091 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination 
-Oct-17 15:38:13.091 [main] DEBUG nextflow.Session - Session await
-Oct-17 15:38:13.214 [Actor Thread 9] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.002 s; external sort time: 0.011 s; total time: 0.013 s
-Oct-17 15:38:13.214 [Actor Thread 7] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.002 s; external sort time: 0.011 s; total time: 0.013 s
-Oct-17 15:38:13.225 [Actor Thread 7] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/collect-file/098e0ecb32e4d0c9c1489431eef1b033
-Oct-17 15:38:13.228 [Actor Thread 9] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/collect-file/281e1ca3c8d37bd1231c2a8a7920ee20
-Oct-17 15:38:13.234 [Actor Thread 9] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-5662845354858256861
-Oct-17 15:38:13.235 [Actor Thread 7] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-10908594045099829935
-Oct-17 15:38:13.699 [FileTransfer-1] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/2f/b7d8d62fc862d561063fae1aef424e/toxin-ref.fa
-Oct-17 15:38:13.700 [FileTransfer-2] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/af2_structures/seatoxin-ref.tar.gz to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/97/37c82dc967d1263835ae55950a7cd0/seatoxin-ref.tar.gz
-Oct-17 15:38:13.700 [FileTransfer-3] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/c1/97dba9b3951abe9c50e31f6a29054c/setoxin-ref.fa
-Oct-17 15:38:13.892 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:13.894 [Task submitter] INFO  nextflow.Session - [63/c1b5a4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)
-Oct-17 15:38:13.912 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:13.913 [Task submitter] INFO  nextflow.Session - [b2/868270] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)
-Oct-17 15:38:13.927 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:13.929 [Task submitter] INFO  nextflow.Session - [d7/9634ad] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)
-Oct-17 15:38:13.947 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:13.957 [Task submitter] INFO  nextflow.Session - [04/d2fa32] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)
-Oct-17 15:38:15.374 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/63/c1b5a4228808870070d846151335af]
-Oct-17 15:38:15.375 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
-Oct-17 15:38:15.392 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:15.402 [Task submitter] INFO  nextflow.Session - [09/3b3d9c] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)
-Oct-17 15:38:15.435 [TaskFinalizer-1] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
-Oct-17 15:38:15.462 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b2/868270283d98027f9195c5b3e8945f]
-Oct-17 15:38:15.484 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:15.487 [Task submitter] INFO  nextflow.Session - [91/391252] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)
-Oct-17 15:38:15.891 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/04/d2fa32297709021c35bbbac3d3a68e]
-Oct-17 15:38:15.904 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:15.906 [Task submitter] INFO  nextflow.Session - [cc/9ed30f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)
-Oct-17 15:38:17.728 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/91/391252a674316c7f6ee8e6a7dbf771]
-Oct-17 15:38:17.737 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:17.738 [Task submitter] INFO  nextflow.Session - [18/15794f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)
-Oct-17 15:38:17.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/09/3b3d9cc763bf3ae1090e0b4c959a95]
-Oct-17 15:38:17.801 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:17.802 [Task submitter] INFO  nextflow.Session - [9c/4a6d30] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)
-Oct-17 15:38:18.355 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/d7/9634ad5f79a0a0b7f3e953d2efa223]
-Oct-17 15:38:18.385 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:18.387 [Task submitter] INFO  nextflow.Session - [c6/adef86] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)
-Oct-17 15:38:18.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/cc/9ed30f4fe47653c9fc382cf6f57b72]
-Oct-17 15:38:18.662 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:18.663 [Task submitter] INFO  nextflow.Session - [b8/c1b643] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)
-Oct-17 15:38:18.977 [TaskFinalizer-7] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
-Oct-17 15:38:19.735 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/9c/4a6d301f5fefb83d28022415fa5665]
-Oct-17 15:38:19.800 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:19.800 [Task submitter] INFO  nextflow.Session - [84/935af3] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)
-Oct-17 15:38:20.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/c6/adef86ad2990167cbfae0be810c265]
-Oct-17 15:38:20.207 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:20.208 [Task submitter] INFO  nextflow.Session - [f5/bf27a4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)
-Oct-17 15:38:20.730 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b8/c1b643d8a8f06cef54d801c4a35184]
-Oct-17 15:38:20.770 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:20.770 [Task submitter] INFO  nextflow.Session - [15/5f2ac1] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)
-Oct-17 15:38:21.350 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/18/15794f34b664c1cb5423e7887022cb]
-Oct-17 15:38:21.364 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:21.367 [Task submitter] INFO  nextflow.Session - [ac/f17128] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)
-Oct-17 15:38:21.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/84/935af333d51426c239c5ad2065feb0]
-Oct-17 15:38:21.624 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:21.625 [Task submitter] INFO  nextflow.Session - [44/242579] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)
-Oct-17 15:38:22.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/f5/bf27a4ac87ab0098fcfd1a47f7cd0c]
-Oct-17 15:38:22.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:22.068 [Task submitter] INFO  nextflow.Session - [8e/dcc998] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)
-Oct-17 15:38:22.552 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/15/5f2ac15c26656afd4c1eda1bb79f9c]
-Oct-17 15:38:22.578 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:22.580 [Task submitter] INFO  nextflow.Session - [02/b5d862] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
-Oct-17 15:38:23.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 15; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ac/f171288f49a5b075a7dded3a2e428b]
-Oct-17 15:38:23.520 [TaskFinalizer-5] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
-Oct-17 15:38:23.539 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:23.540 [Task submitter] INFO  nextflow.Session - [4a/6cc074] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
-Oct-17 15:38:23.901 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/8e/dcc998ecad069c29fd35191bea9d21]
-Oct-17 15:38:23.917 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:23.918 [Task submitter] INFO  nextflow.Session - [cd/57377d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
-Oct-17 15:38:24.025 [FileTransfer-4] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin.ref to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/8e/1a4ac64d365ab2c450ecf798bad6ca/toxin.ref
-Oct-17 15:38:24.922 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 20; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/02/b5d86213fa1b24e35aefc01333ff23]
-Oct-17 15:38:24.966 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:24.970 [Task submitter] INFO  nextflow.Session - [e4/9d98f8] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
-Oct-17 15:38:26.060 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/4a/6cc074951a9bda6d270d34a06fb4f2]
-Oct-17 15:38:26.077 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:26.077 [Task submitter] INFO  nextflow.Session - [95/7af10d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)
-Oct-17 15:38:26.419 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/cd/57377dc490458f4171954b893aed55]
-Oct-17 15:38:26.437 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:26.440 [Task submitter] INFO  nextflow.Session - [7f/41a79a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)
-Oct-17 15:38:27.391 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/e4/9d98f850d8eb17ba549b1fb3acbee6]
-Oct-17 15:38:27.400 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:27.400 [Task submitter] INFO  nextflow.Session - [52/5f8a8e] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)
-Oct-17 15:38:27.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7f/41a79a3f057ca25d5fd125920bd18f]
-Oct-17 15:38:27.934 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:27.934 [Task submitter] INFO  nextflow.Session - [69/45937d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)
-Oct-17 15:38:28.003 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 19; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/95/7af10dd098fd25836311414adc5f45]
-Oct-17 15:38:28.014 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:28.029 [Task submitter] INFO  nextflow.Session - [02/8e36da] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)
-Oct-17 15:38:30.109 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 25; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/69/45937d045598995cc9a6db67e7619d]
-Oct-17 15:38:30.114 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:30.116 [Task submitter] INFO  nextflow.Session - [1c/6d6917] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)
-Oct-17 15:38:30.184 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 26; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/02/8e36da97c40755ab69095a27066935]
-Oct-17 15:38:30.201 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:30.202 [Task submitter] INFO  nextflow.Session - [5f/949425] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)
-Oct-17 15:38:30.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/44/242579aeaefb8a4cd6a2639d6afde8]
-Oct-17 15:38:30.419 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:30.420 [Task submitter] INFO  nextflow.Session - [7a/7de8b8] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)
-Oct-17 15:38:30.505 [FileTransfer-5] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin.ref to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/stage-fbc329ea-376b-4651-a144-fe8ddfd305b1/eb/46f19bf2ba140d0bb7c73a3547c4bf/setoxin.ref
-Oct-17 15:38:31.785 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 28; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5f/949425e8cc31c5e46ddbd916fe208f]
-Oct-17 15:38:31.801 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:31.802 [Task submitter] INFO  nextflow.Session - [05/d3df2e] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)
-Oct-17 15:38:32.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 31; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7a/7de8b8bffc97f8a9aa0da39046eaf6]
-Oct-17 15:38:32.045 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:32.046 [Task submitter] INFO  nextflow.Session - [b6/63d553] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)
-Oct-17 15:38:32.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 27; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/1c/6d691772dc7257a4904d7f6b001b54]
-Oct-17 15:38:32.439 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:32.440 [Task submitter] INFO  nextflow.Session - [fd/9167c6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)
-Oct-17 15:38:34.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 29; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/05/d3df2e2e6def6012c3be58a6b8a90a]
-Oct-17 15:38:34.070 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:34.074 [Task submitter] INFO  nextflow.Session - [c8/fa1032] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)
-Oct-17 15:38:35.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 24; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/52/5f8a8ee1e74371e2e2ba9178b4135a]
-Oct-17 15:38:35.511 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:35.511 [Task submitter] INFO  nextflow.Session - [fa/3a57d1] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)
-Oct-17 15:38:35.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 30; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/c8/fa1032d2e6434d6e742a57ceec973c]
-Oct-17 15:38:35.908 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:35.909 [Task submitter] INFO  nextflow.Session - [e2/340e4a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)
-Oct-17 15:38:38.311 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 48; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/e2/340e4a87e39b27af4beb10ce3ffae1]
-Oct-17 15:38:38.318 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:38.318 [Task submitter] INFO  nextflow.Session - [5e/94a732] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)
-Oct-17 15:38:39.378 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 53; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fd/9167c6773c404197c4350b5b964a4b]
-Oct-17 15:38:39.383 [TaskFinalizer-3] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
-Oct-17 15:38:39.386 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:39.390 [Task submitter] INFO  nextflow.Session - [a5/6574f9] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)
-Oct-17 15:38:39.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 52; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fa/3a57d1c0c7266a81ce7cf2769d3fcb]
-Oct-17 15:38:39.544 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:39.544 [Task submitter] INFO  nextflow.Session - [3e/bcfb71] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)
-Oct-17 15:38:39.555 [TaskFinalizer-4] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN > Skipping output binding because one or more optional files are missing: fileoutparam<1:1>
-Oct-17 15:38:41.190 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 49; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a5/6574f9be8e1623ad49486203d12d9f]
-Oct-17 15:38:41.196 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:41.197 [Task submitter] INFO  nextflow.Session - [27/a1c836] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)
-Oct-17 15:38:41.324 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 41; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3e/bcfb71e2ba1668565e422982c6dfb5]
-Oct-17 15:38:41.333 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:41.334 [Task submitter] INFO  nextflow.Session - [5c/65869a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)
-Oct-17 15:38:42.276 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 50; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b6/63d55356a422f916a7d9a432289eb7]
-Oct-17 15:38:42.280 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:42.281 [Task submitter] INFO  nextflow.Session - [96/cd03b6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)
-Oct-17 15:38:43.773 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 36; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/96/cd03b633776a524f2d36b08d8cd805]
-Oct-17 15:38:43.777 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:43.779 [Task submitter] INFO  nextflow.Session - [6f/fae71b] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)
-Oct-17 15:38:43.850 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 33; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5c/65869a6e7c77799f32c6e57d9337d0]
-Oct-17 15:38:43.858 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:43.858 [Task submitter] INFO  nextflow.Session - [77/1442cd] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)
-Oct-17 15:38:44.118 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 47; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/27/a1c8363fd72a4bfeb3154778799ff6]
-Oct-17 15:38:44.125 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:44.125 [Task submitter] INFO  nextflow.Session - [ad/36d18c] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)
-Oct-17 15:38:45.908 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 42; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ad/36d18c3927b1daaf2b33159fe61e8f]
-Oct-17 15:38:45.913 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:45.913 [Task submitter] INFO  nextflow.Session - [5e/d57124] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)
-Oct-17 15:38:46.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 37; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/77/1442cd131e38dddab926cf84748204]
-Oct-17 15:38:46.546 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:46.547 [Task submitter] INFO  nextflow.Session - [4e/ed5324] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)
-Oct-17 15:38:47.864 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 44; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5e/d57124124b734ad16a8ff190a77b30]
-Oct-17 15:38:47.870 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:47.871 [Task submitter] INFO  nextflow.Session - [4a/a882d6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)
-Oct-17 15:38:48.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 32; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/4e/ed5324e3886c50b562aaa986fa5dc7]
-Oct-17 15:38:48.199 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:48.200 [Task submitter] INFO  nextflow.Session - [6d/a52445] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)
-Oct-17 15:38:48.200 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 51; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5e/94a7321f77b7de2641403ad259703a]
-Oct-17 15:38:48.212 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:48.212 [Task submitter] INFO  nextflow.Session - [86/ee78df] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)
-Oct-17 15:38:51.209 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 39; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/86/ee78df29096e45a68f93a09d40c92f]
-Oct-17 15:38:51.213 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:51.218 [Task submitter] INFO  nextflow.Session - [57/c0ad2f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)
-Oct-17 15:38:51.322 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 35; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6d/a52445ee20069dade26e364700fab4]
-Oct-17 15:38:51.327 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:38:51.339 [Task submitter] INFO  nextflow.Session - [14/c768d2] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)
-Oct-17 15:39:05.256 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 43; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6f/fae71b875764d25e5f50c38c2dc350]
-Oct-17 15:39:05.260 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:05.261 [Task submitter] INFO  nextflow.Session - [bc/9b5fae] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)
-Oct-17 15:39:05.362 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 46; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/57/c0ad2f4eec7301fd57e8c3c5f8ec3c]
-Oct-17 15:39:05.367 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:05.369 [Task submitter] INFO  nextflow.Session - [0f/6d0d55] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)
-Oct-17 15:39:05.427 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 34; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/4a/a882d6173a23c114fd660881acef0b]
-Oct-17 15:39:05.434 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:05.434 [Task submitter] INFO  nextflow.Session - [ad/561d6d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
-Oct-17 15:39:08.662 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 54; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ad/561d6df39984543a9cccf199449239]
-Oct-17 15:39:08.675 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:08.675 [Task submitter] INFO  nextflow.Session - [b8/f98978] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)
-Oct-17 15:39:11.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 55; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/b8/f98978b8ccf766537323ffa5e2a572]
-Oct-17 15:39:11.831 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:11.833 [Task submitter] INFO  nextflow.Session - [99/0324ab] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)
-Oct-17 15:39:13.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 45; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/0f/6d0d55f5c2f5b3154b95cf1fcef25f]
-Oct-17 15:39:13.104 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:13.104 [Task submitter] INFO  nextflow.Session - [a7/e5e123] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)
-Oct-17 15:39:15.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 58; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a7/e5e1231ed2af4a57783db30e639b27]
-Oct-17 15:39:15.643 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:15.643 [Task submitter] INFO  nextflow.Session - [51/0da7d0] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)
-Oct-17 15:39:16.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 56; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/99/0324ab042a9ef2138d5e98ade6f255]
-Oct-17 15:39:16.641 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:16.641 [Task submitter] INFO  nextflow.Session - [23/8d7873] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)
-Oct-17 15:39:18.167 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 57; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/51/0da7d0c7d3e969fa6ce6d9aace1386]
-Oct-17 15:39:18.173 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:18.174 [Task submitter] INFO  nextflow.Session - [c7/8b49aa] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)
-Oct-17 15:39:19.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 60; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/23/8d78739cb774d83c33164bd2a84878]
-Oct-17 15:39:19.623 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:19.624 [Task submitter] INFO  nextflow.Session - [34/be4e8a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)
-Oct-17 15:39:22.022 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 59; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/c7/8b49aa316c9b67574ed672ba44a390]
-Oct-17 15:39:22.026 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:22.026 [Task submitter] INFO  nextflow.Session - [42/0d4086] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)
-Oct-17 15:39:24.028 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 61; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/34/be4e8a3c457f4763c239095ed717e6]
-Oct-17 15:39:24.043 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:24.043 [Task submitter] INFO  nextflow.Session - [d4/5e3777] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
-Oct-17 15:39:25.553 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 62; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/42/0d4086b9997f7d6f326850e65c1463]
-Oct-17 15:39:25.559 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:25.559 [Task submitter] INFO  nextflow.Session - [49/b9014d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
-Oct-17 15:39:27.467 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 63; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/d4/5e377747dc210add63af499e5aa79f]
-Oct-17 15:39:27.472 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:27.473 [Task submitter] INFO  nextflow.Session - [e6/4eb766] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
-Oct-17 15:39:29.595 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 65; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/49/b9014d52cef49bdf3de75674b793dd]
-Oct-17 15:39:29.606 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:29.606 [Task submitter] INFO  nextflow.Session - [3c/8ee85f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
-Oct-17 15:39:30.044 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 64; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/e6/4eb766a97e3d961c6322c84bfa334b]
-Oct-17 15:39:30.058 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:30.061 [Task submitter] INFO  nextflow.Session - [f7/c88f6a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
-Oct-17 15:39:32.226 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 67; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3c/8ee85ff5469526b73dee5eab2771c3]
-Oct-17 15:39:32.233 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:32.235 [Task submitter] INFO  nextflow.Session - [6e/16d0e0] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
-Oct-17 15:39:32.316 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 66; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/f7/c88f6a12463d26b1857c693fcfe3c4]
-Oct-17 15:39:32.328 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:32.334 [Task submitter] INFO  nextflow.Session - [89/8660b0] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
-Oct-17 15:39:34.876 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 68; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6e/16d0e0889dab97a5c67aabfccf645b]
-Oct-17 15:39:34.891 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:34.894 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 71; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/89/8660b0258e87ae57bbaf952039dabb]
-Oct-17 15:39:34.903 [Task submitter] INFO  nextflow.Session - [48/10cdaa] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
-Oct-17 15:39:34.909 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:34.909 [Task submitter] INFO  nextflow.Session - [ee/a81f26] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
-Oct-17 15:39:37.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 70; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ee/a81f26a64b252bcdc4a31fc6d051e5]
-Oct-17 15:39:37.629 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:37.631 [Task submitter] INFO  nextflow.Session - [6f/78bcec] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
-Oct-17 15:39:37.639 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 69; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/48/10cdaa6da12bb595215052e9b0623b]
-Oct-17 15:39:37.664 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:37.666 [Task submitter] INFO  nextflow.Session - [a5/9af165] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
-Oct-17 15:39:40.759 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 73; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a5/9af165ec3d8b9a165fad0bdc3878a6]
-Oct-17 15:39:40.769 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:40.775 [Task submitter] INFO  nextflow.Session - [85/71ca89] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
-Oct-17 15:39:40.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 72; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/6f/78bcecaa97d83b0a353d7c087118f8]
-Oct-17 15:39:40.810 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:40.820 [Task submitter] INFO  nextflow.Session - [65/0479c2] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
-Oct-17 15:39:44.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 74; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/85/71ca8973e3f7a523fcb6ab9e1c2dda]
-Oct-17 15:39:44.908 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:44.908 [Task submitter] INFO  nextflow.Session - [7b/f1b211] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
-Oct-17 15:39:44.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 75; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/65/0479c27e9006d85716565c5404a197]
-Oct-17 15:39:44.986 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:44.987 [Task submitter] INFO  nextflow.Session - [7a/3fd442] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
-Oct-17 15:39:47.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 77; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7a/3fd4422516841159828c88ed6c1ddf]
-Oct-17 15:39:47.088 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:47.089 [Task submitter] INFO  nextflow.Session - [57/f1ac83] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)
-Oct-17 15:39:47.120 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 76; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7b/f1b211f548821a4007e69672188c1e]
-Oct-17 15:39:47.135 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:47.136 [Task submitter] INFO  nextflow.Session - [93/9525e6] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)
-Oct-17 15:39:49.449 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 79; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/93/9525e6bdcc9b8f6e82071262eec268]
-Oct-17 15:39:49.455 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:49.455 [Task submitter] INFO  nextflow.Session - [ae/612f8e] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
-Oct-17 15:39:51.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 80; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/ae/612f8e8d5e664c4d4c6c995dff7adc]
-Oct-17 15:39:51.978 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:51.980 [Task submitter] INFO  nextflow.Session - [54/73dbfe] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)
-Oct-17 15:39:52.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 78; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/57/f1ac83991bb454269bf13dfd7b1161]
-Oct-17 15:39:52.541 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:52.541 [Task submitter] INFO  nextflow.Session - [d7/b5238a] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)
-Oct-17 15:39:54.761 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 81; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/54/73dbfe19891a4a781754b707a83d78]
-Oct-17 15:39:54.776 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:54.777 [Task submitter] INFO  nextflow.Session - [84/6592a7] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
-Oct-17 15:39:54.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 82; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/d7/b5238acb8a97630f43bf3c88c3a610]
-Oct-17 15:39:54.827 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:54.828 [Task submitter] INFO  nextflow.Session - [3f/faa3cb] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
-Oct-17 15:39:57.686 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 165; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3f/faa3cb59e21347cff5fc5f69b2d8e5]
-Oct-17 15:39:57.692 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:57.692 [Task submitter] INFO  nextflow.Session - [fb/0d20be] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
-Oct-17 15:39:57.742 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 84; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/84/6592a7ccd04d1553531f1f4d2ff948]
-Oct-17 15:39:57.756 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:39:57.756 [Task submitter] INFO  nextflow.Session - [51/b3ff56] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
-Oct-17 15:40:00.162 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 86; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/51/b3ff569a8c8ddcaefc046d7bdf5027]
-Oct-17 15:40:00.171 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:00.172 [Task submitter] INFO  nextflow.Session - [88/2e27d3] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
-Oct-17 15:40:00.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 83; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fb/0d20be3c23cae9b5ba16e7e13fce61]
-Oct-17 15:40:00.259 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:00.259 [Task submitter] INFO  nextflow.Session - [0b/391a50] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
-Oct-17 15:40:02.961 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 87; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/0b/391a50ec7b3226037d26a9b6ca8bbe]
-Oct-17 15:40:02.967 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:02.967 [Task submitter] INFO  nextflow.Session - [05/4ed726] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
-Oct-17 15:40:03.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 85; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/88/2e27d3e141a924f73d5f7e3708e46a]
-Oct-17 15:40:03.985 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:03.986 [Task submitter] INFO  nextflow.Session - [3b/3df659] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)
-Oct-17 15:40:06.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 88; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/05/4ed726d0f2684d281f6ee72d00939d]
-Oct-17 15:40:06.332 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:06.333 [Task submitter] INFO  nextflow.Session - [83/efd2c9] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)
-Oct-17 15:40:08.116 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 91; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/83/efd2c91c913203035d6665e7129cb0]
-Oct-17 15:40:08.137 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:08.140 [Task submitter] INFO  nextflow.Session - [fd/546ad4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)
-Oct-17 15:40:09.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 89; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3b/3df6591d52ba8028973c77a97ea7c1]
-Oct-17 15:40:09.227 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:09.227 [Task submitter] INFO  nextflow.Session - [3d/814b06] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)
-Oct-17 15:40:10.585 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 90; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/fd/546ad4df7d67753420a669c9d4f52e]
-Oct-17 15:40:10.589 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:10.590 [Task submitter] INFO  nextflow.Session - [a5/a77e58] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)
-Oct-17 15:40:12.534 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 92; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/3d/814b0663ee3ecdbb1d6c0f3c6c9180]
-Oct-17 15:40:12.549 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:12.550 [Task submitter] INFO  nextflow.Session - [7b/9bbb8d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)
-Oct-17 15:40:14.554 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 93; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/a5/a77e58ad00d0bfd03e5f6abf03e965]
-Oct-17 15:40:14.559 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:14.560 [Task submitter] INFO  nextflow.Session - [18/ea7999] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)
-Oct-17 15:40:14.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 96; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/7b/9bbb8d2d6f2a8a259ca1160c618c75]
-Oct-17 15:40:14.585 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:14.585 [Task submitter] INFO  nextflow.Session - [bf/8cd43f] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)
-Oct-17 15:40:17.829 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 95; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); status: COMPLETED; exit: 1; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9]
-Oct-17 15:40:17.840 [TaskFinalizer-4] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
-Oct-17 15:40:17.842 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:17.843 [Task submitter] INFO  nextflow.Session - [5d/0a9534] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)
-Oct-17 15:40:17.852 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 94; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/18/ea7999d4640bb1a6276a5d76941e38]
-Oct-17 15:40:17.860 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 15:40:17.861 [Task submitter] INFO  nextflow.Session - [1b/638c93] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)
-Oct-17 15:40:17.911 [TaskFinalizer-4] ERROR nextflow.processor.TaskProcessor - Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)'
-
-Caused by:
-  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
-
-
-Command executed:
-
-  # check whether it is compressed
-  if [[ "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln" == *.gz ]]; then
-      unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa
-  else
-      mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa
-  fi
-  
-  export TEMP='./'
-  t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v "seq1" | grep -v '*' |         awk '{ print $4}' ORS="	"         >> "scores.txt"
-  
-  # Add metadata info to output file
-  echo "id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp" > "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
-  
-  # Add values
-  scores=$(awk '{sub(/[[:space:]]+$/, "")} 1' scores.txt | tr -s '[:blank:]' ',')
-  echo "seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores" >> "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
-  
-  cat <<-END_VERSIONS > versions.yml
-  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP":
-      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
-      pigz: $(echo $(pigz --version 2>&1) | sed 's/^.*pigz\w*//' ))
-  END_VERSIONS
-
-Command exit status:
-  1
-
-Command output:
-  (empty)
-
-Command error:
-  
-  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
-  
-  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
-
-Work dir:
-  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
-
-Container:
-  quay.io/biocontainers/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0
-
-Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
-Oct-17 15:40:17.955 [TaskFinalizer-4] WARN  n.c.DataContainers.TDPDataMatrix - No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 15:40:17.959 [TaskFinalizer-4] WARN  n.co2footprint.utils.HelperFunctions - Missing trace value '%cpu' for task 95, using default: 100% for all 2 cores.
-Oct-17 15:40:17.961 [TaskFinalizer-4] INFO  nextflow.Session - Execution cancelled -- Finishing pending tasks before exit
-Oct-17 15:40:18.008 [TaskFinalizer-4] ERROR nextflow.Nextflow - Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
-Oct-17 15:40:18.009 [main] DEBUG nextflow.Session - Session await > all processes finished
-Oct-17 15:40:18.014 [Actor Thread 11] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS; work-dir=null
-  error [java.lang.InterruptedException]: java.lang.InterruptedException
-Oct-17 15:40:18.069 [Actor Thread 16] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP; work-dir=null
-  error [java.lang.InterruptedException]: java.lang.InterruptedException
-Oct-17 15:40:18.072 [Actor Thread 41] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT; work-dir=null
-  error [java.lang.InterruptedException]: java.lang.InterruptedException
-Oct-17 15:40:18.174 [Actor Thread 46] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 27; slices: 1; internal sort time: 0.08 s; external sort time: 0.021 s; total time: 0.101 s
-Oct-17 15:40:18.196 [Actor Thread 46] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/collect-file/472aaacee1152b66cb80f2dccf73a646
-Oct-17 15:40:18.201 [Actor Thread 46] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-5984352675357452201
-Oct-17 15:40:21.260 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 97; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); status: COMPLETED; exit: 1; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5d/0a953444a0e1d6c2e8a6b01a7e3eea]
-Oct-17 15:40:21.262 [TaskFinalizer-6] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/5d/0a953444a0e1d6c2e8a6b01a7e3eea
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)` terminated with an error exit status (1)
-Oct-17 15:40:21.286 [TaskFinalizer-6] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 15:40:21.289 [TaskFinalizer-6] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 97, using default: 100% for all 2 cores.
-Oct-17 15:40:21.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 98; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/1b/638c93206d6478344e1f24df45ea7c]
-Oct-17 15:41:15.313 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 38; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); status: COMPLETED; exit: 125; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bc/9b5fae3e26729c55fb1b9354fc9550]
-Oct-17 15:41:15.315 [TaskFinalizer-9] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bc/9b5fae3e26729c55fb1b9354fc9550
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)` terminated with an error exit status (125)
-Oct-17 15:41:15.322 [TaskFinalizer-9] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 15:41:15.323 [TaskFinalizer-9] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 38, using default: 100% for all 2 cores.
-Oct-17 15:41:31.501 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 40; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); status: COMPLETED; exit: 125; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/14/c768d2a548be1c5a557721aec4e4a1]
-Oct-17 15:41:31.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop
-Oct-17 15:41:31.503 [main] DEBUG nextflow.Session - Session await > all barriers passed
-Oct-17 15:41:31.504 [TaskFinalizer-8] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/14/c768d2a548be1c5a557721aec4e4a1
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)` terminated with an error exit status (125)
-Oct-17 15:41:31.509 [TaskFinalizer-8] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 15:41:31.510 [TaskFinalizer-8] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 40, using default: 100% for all 2 cores.
-Oct-17 15:41:31.511 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'TaskFinalizer' shutdown completed (hard=false)
-Oct-17 15:41:31.512 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'PublishDir' shutdown completed (hard=false)
-Oct-17 15:41:31.518 [main] INFO  nextflow.Nextflow - -[nf-core/multiplesequencealign] Pipeline completed with errors-
-Oct-17 15:41:31.525 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=95; failedCount=4; ignoredCount=0; cachedCount=0; pendingCount=129; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=3m 21s; failedDuration=9m 53s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=5; peakCpus=10; peakMemory=15 GB; ]
-Oct-17 15:41:31.525 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file
-Oct-17 15:41:31.526 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow completed -- rendering & saving files
-Oct-17 15:41:31.907 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
-Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-tower@1.11.4'
-Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-tower
-Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-prov@1.2.2'
-Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-prov
-Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-co2footprint@1.0.0'
-Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-co2footprint
-Oct-17 15:41:31.924 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-schema@2.5.1'
-Oct-17 15:41:31.924 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-schema
-Oct-17 15:41:31.925 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'FileTransfer' shutdown completed (hard=false)
-Oct-17 15:41:31.927 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json
deleted file mode 100644
index 86179711..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json
+++ /dev/null
@@ -1 +0,0 @@
-{"outdir":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output"}
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err
deleted file mode 100644
index 88fed570..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.err
+++ /dev/null
@@ -1 +0,0 @@
-Nextflow 25.04.8 is available - Please consider updating your version to it(B
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out
deleted file mode 100644
index 76681136..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/std.out
+++ /dev/null
@@ -1,50 +0,0 @@
-ERROR - [nf-co2footprint] Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)'
-
-Caused by:
-  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
-
-
-Command executed:
-
-  # check whether it is compressed
-  if [[ "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln" == *.gz ]]; then
-      unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa
-  else
-      mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa
-  fi
-  
-  export TEMP='./'
-  t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v "seq1" | grep -v '*' |         awk '{ print $4}' ORS="	"         >> "scores.txt"
-  
-  # Add metadata info to output file
-  echo "id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp" > "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
-  
-  # Add values
-  scores=$(awk '{sub(/[[:space:]]+$/, "")} 1' scores.txt | tr -s '[:blank:]' ',')
-  echo "seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores" >> "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
-  
-  cat <<-END_VERSIONS > versions.yml
-  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP":
-      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
-      pigz: $(echo $(pigz --version 2>&1) | sed 's/^.*pigz\w*//' ))
-  END_VERSIONS
-
-Command exit status:
-  1
-
-Command output:
-  (empty)
-
-Command error:
-  
-  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
-  
-  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
-
-Work dir:
-  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
-
-Container:
-  quay.io/biocontainers/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0
-
-Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command lineERROR - [nf-co2footprint] Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
deleted file mode 100644
index 35ffc2a3..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv
+++ /dev/null
@@ -1,100 +0,0 @@
-task_id	hash	native_id	name	status	exit	realtime	%cpu	rss	peak_rss	vmem	peak_vmem	rchar	wchar	cpus	start
-6	63/c1b5a4	3942212	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)	COMPLETED	0	0ms	35.4%	3 MB	3 MB	5.4 MB	5.4 MB	74.8 KB	3.5 KB	2	2025-10-17 15:38:13.966
-13	b2/868270	3942234	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)	COMPLETED	0	0ms	41.5%	2.9 MB	2.9 MB	5.4 MB	5.4 MB	78.5 KB	3.7 KB	2	2025-10-17 15:38:13.985
-1	04/d2fa32	3942285	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)	COMPLETED	0	211ms	38.6%	3.2 MB	3.2 MB	4.6 MB	4.6 MB	721.2 KB	684.8 KB	2	2025-10-17 15:38:14.000
-8	91/391252	3942471	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)	COMPLETED	0	1s	52.6%	6.3 MB	6.3 MB	8.6 MB	8.6 MB	998.4 KB	4.1 KB	2	2025-10-17 15:38:15.564
-11	09/3b3d9c	3942456	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)	COMPLETED	0	1s	48.5%	6 MB	6 MB	8.6 MB	8.6 MB	1010.4 KB	9.8 KB	2	2025-10-17 15:38:15.482
-2	d7/9634ad	3942249	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	COMPLETED	0	3s	69.8%	70.2 MB	70.2 MB	1.1 GB	1.1 GB	15.7 MB	623 B	2	2025-10-17 15:38:13.993
-3	cc/9ed30f	3942564	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	COMPLETED	0	1s	60.3%	10.6 MB	10.6 MB	16.9 MB	16.9 MB	4.3 MB	481 B	2	2025-10-17 15:38:15.991
-10	9c/4a6d30	3943021	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	COMPLETED	0	1s	33.9%	7 MB	7 MB	14.2 MB	14.2 MB	167.7 KB	17.2 KB	2	2025-10-17 15:38:17.891
-14	c6/adef86	3943153	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)	COMPLETED	0	0ms	53.8%	3.1 MB	3.1 MB	5.4 MB	5.4 MB	75.9 KB	3 KB	2	2025-10-17 15:38:18.468
-4	b8/c1b643	3943203	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	COMPLETED	0	1s	35.2%	3.2 MB	3.2 MB	5.4 MB	5.4 MB	147.6 KB	1.7 KB	2	2025-10-17 15:38:18.752
-9	18/15794f	3943002	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	COMPLETED	0	2s	99.0%	78.3 MB	78.3 MB	1.1 GB	1.1 GB	15.7 MB	882 B	2	2025-10-17 15:38:17.792
-12	84/935af3	3943314	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	COMPLETED	0	0ms	48.9%	8.1 MB	8.1 MB	85.9 MB	148.4 MB	70.4 KB	2.7 KB	2	2025-10-17 15:38:19.835
-5	f5/bf27a4	3943396	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)	COMPLETED	0	0ms	45.9%	2.9 MB	2.9 MB	5.4 MB	5.4 MB	77.4 KB	3.5 KB	2	2025-10-17 15:38:20.290
-7	15/5f2ac1	3943479	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	COMPLETED	0	0ms	59.0%	3 MB	3 MB	5.4 MB	5.4 MB	68.1 KB	833 B	2	2025-10-17 15:38:20.829
-15	ac/f17128	3943722	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	COMPLETED	0	1s	71.8%	12.7 MB	12.7 MB	19.2 MB	19.2 MB	4.3 MB	481 B	2	2025-10-17 15:38:21.450
-17	8e/dcc998	3943874	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	COMPLETED	0	0ms	126.3%	7.3 MB	7.3 MB	1.1 GB	1.1 GB	89.7 KB	5.6 KB	2	2025-10-17 15:38:22.144
-20	02/b5d862	3944000	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	1s	39.9%	6.8 MB	6.8 MB	14.2 MB	14.2 MB	934.5 KB	234.5 KB	2	2025-10-17 15:38:22.711
-22	4a/6cc074	3944086	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	1s	49.0%	2.9 MB	2.9 MB	5.4 MB	5.4 MB	928.2 KB	232.1 KB	2	2025-10-17 15:38:23.611
-18	cd/57377d	3944155	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	0ms	44.4%	3.1 MB	3.1 MB	5.4 MB	5.4 MB	941.3 KB	237 KB	2	2025-10-17 15:38:24.002
-21	e4/9d98f8	3944284	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	0ms	50.3%	3.1 MB	3.1 MB	5.4 MB	5.4 MB	904.5 KB	223.2 KB	2	2025-10-17 15:38:25.023
-23	7f/41a79a	3944527	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)	COMPLETED	0	78ms	50.0%	3 MB	3 MB	4.3 MB	4.3 MB	145 KB	1.5 KB	2	2025-10-17 15:38:26.518
-19	95/7af10d	3944452	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	COMPLETED	0	0ms	53.2%	7 MB	7 MB	14.2 MB	14.2 MB	899.2 KB	221.3 KB	2	2025-10-17 15:38:26.159
-25	69/45937d	3944726	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)	COMPLETED	0	149ms	28.4%	3 MB	3 MB	4.3 MB	4.3 MB	129.5 KB	1.5 KB	2	2025-10-17 15:38:28.003
-26	02/8e36da	3944741	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)	COMPLETED	0	0ms	47.6%	3 MB	3 MB	4.3 MB	4.3 MB	73.9 KB	531 B	2	2025-10-17 15:38:28.101
-16	44/242579	3943778	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)	COMPLETED	0	7s	83.5%	47.2 MB	47.2 MB	276.9 MB	276.9 MB	17.5 MB	224.3 KB	2	2025-10-17 15:38:21.690
-28	5f/949425	3945071	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	COMPLETED	0	0ms	53.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	88.3 KB	4.1 KB	2	2025-10-17 15:38:30.284
-31	7a/7de8b8	3945132	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	47.1%	3 MB	3 MB	4.3 MB	4.3 MB	106.8 KB	2 KB	2	2025-10-17 15:38:30.502
-27	1c/6d6917	3945040	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)	COMPLETED	0	0ms	46.1%	7.8 MB	7.8 MB	13.4 MB	13.4 MB	694.1 KB	29 KB	2	2025-10-17 15:38:30.184
-29	05/d3df2e	3945301	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)	COMPLETED	0	1s	43.9%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	676.2 KB	16.4 KB	2	2025-10-17 15:38:31.885
-24	52/5f8a8e	3944665	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)	COMPLETED	0	6s	91.9%	51.6 MB	51.6 MB	282.2 MB	282.2 MB	18 MB	595.7 KB	2	2025-10-17 15:38:27.485
-30	c8/fa1032	3945758	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	36.8%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	88.2 KB	4.1 KB	2	2025-10-17 15:38:34.132
-48	e2/340e4a	3945978	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)	COMPLETED	0	1s	39.0%	6.1 MB	6.1 MB	8.6 MB	8.6 MB	991.1 KB	11.2 KB	2	2025-10-17 15:38:36.005
-53	fd/9167c6	3945446	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	COMPLETED	0	5.2s	67.6%	98.6 MB	98.6 MB	120.3 MB	120.3 MB	3.1 MB	2.8 MB	2	2025-10-17 15:38:32.495
-52	fa/3a57d1	3945929	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	COMPLETED	0	2.2s	23.3%	27.1 MB	27.1 MB	31.5 MB	31.5 MB	422 KB	145.9 KB	2	2025-10-17 15:38:35.560
-49	a5/6574f9	3946456	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	75.7%	13.3 MB	14.2 MB	1.1 GB	1.1 GB	89.3 KB	5.5 KB	2	2025-10-17 15:38:39.480
-41	3e/bcfb71	3946498	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	28.2%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	109.1 KB	4.6 KB	2	2025-10-17 15:38:39.641
-50	b6/63d553	3945352	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)	COMPLETED	0	8s	171.0%	28.2 MB	28.2 MB	541.4 MB	544.2 MB	759.9 KB	35.3 KB	2	2025-10-17 15:38:32.125
-36	96/cd03b6	3946899	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	40.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	115.5 KB	2.2 KB	2	2025-10-17 15:38:42.376
-33	5c/65869a	3946687	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	1s	37.6%	7.4 MB	7.4 MB	9.6 MB	9.6 MB	979 KB	4.3 KB	2	2025-10-17 15:38:41.423
-47	27/a1c836	3946657	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	1s	37.5%	7.3 MB	7.3 MB	9.6 MB	9.6 MB	991 KB	10.5 KB	2	2025-10-17 15:38:41.290
-42	ad/36d18c	3947190	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	44.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	102.2 KB	2.1 KB	2	2025-10-17 15:38:44.218
-37	77/1442cd	3947127	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)	COMPLETED	0	0ms	38.8%	6.3 MB	6.3 MB	8.6 MB	8.6 MB	979 KB	4.4 KB	2	2025-10-17 15:38:43.951
-44	5e/d57124	3947430	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	0ms	64.9%	8 MB	8 MB	11.3 MB	11.4 MB	117.2 KB	4.1 KB	2	2025-10-17 15:38:46.008
-32	4e/ed5324	3947551	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	0ms	26.2%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	99.9 KB	731 B	2	2025-10-17 15:38:46.642
-51	5e/94a732	3946274	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)	COMPLETED	0	8s	187.9%	28.2 MB	28.2 MB	541.6 MB	604.7 MB	4.8 MB	52.7 KB	2	2025-10-17 15:38:38.412
-39	86/ee78df	3947782	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)	COMPLETED	0	1s	107.1%	19.6 MB	19.6 MB	25.1 MB	25.1 MB	1.1 MB	29.4 KB	2	2025-10-17 15:38:48.302
-35	6d/a52445	3947780	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	COMPLETED	0	1s	98.0%	35.1 MB	35.1 MB	46 MB	46 MB	739.2 KB	18 KB	2	2025-10-17 15:38:48.301
-43	6f/fae71b	3947111	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)	COMPLETED	0	8s	100.2%	44.6 MB	44.6 MB	622.9 MB	686.9 MB	18.9 MB	643.2 KB	2	2025-10-17 15:38:43.852
-46	57/c0ad2f	3948219	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)	COMPLETED	0	5.7s	90.0%	132.6 MB	133.2 MB	743.9 MB	807.9 MB	19.9 MB	423.1 KB	2	2025-10-17 15:38:51.310
-34	4a/a882d6	3947725	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)	COMPLETED	0	6s	85.0%	44.4 MB	44.4 MB	272.6 MB	336.6 MB	18.3 MB	241.4 KB	2	2025-10-17 15:38:47.965
-54	ad/561d6d	3949638	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	177ms	34.1%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	125.2 KB	4.2 KB	2	2025-10-17 15:39:05.527
-55	b8/f98978	3950005	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	COMPLETED	0	1s	39.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	86.8 KB	1.2 KB	2	2025-10-17 15:39:08.763
-45	0f/6d0d55	3949615	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	COMPLETED	0	6.3s	65.5%	133.6 MB	135 MB	746.2 MB	810.4 MB	17.1 MB	185.7 KB	2	2025-10-17 15:39:05.428
-58	a7/e5e123	3950505	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	COMPLETED	0	0ms	57.9%	3 MB	3 MB	4.3 MB	4.3 MB	292.4 KB	10.3 KB	2	2025-10-17 15:39:13.199
-56	99/0324ab	3950334	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	COMPLETED	0	4s	81.0%	75.3 MB	75.3 MB	91.3 MB	91.3 MB	3 MB	2.7 MB	2	2025-10-17 15:39:11.882
-57	51/0da7d0	3950939	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	COMPLETED	0	1s	46.5%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	292.4 KB	10.3 KB	2	2025-10-17 15:39:15.739
-60	23/8d7873	3951134	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)	COMPLETED	0	167ms	34.0%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	390.2 KB	2.3 KB	2	2025-10-17 15:39:16.729
-59	c7/8b49aa	3951218	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)	COMPLETED	0	500ms	30.1%	11.2 MB	11.2 MB	38.9 MB	38.9 MB	355.2 KB	6.3 KB	2	2025-10-17 15:39:18.267
-61	34/be4e8a	3951544	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)	COMPLETED	0	58ms	49.2%	3 MB	3 MB	4.3 MB	4.3 MB	114.4 KB	884 B	2	2025-10-17 15:39:19.719
-62	42/0d4086	3951796	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)	COMPLETED	0	0ms	43.5%	3 MB	3 MB	4.3 MB	4.3 MB	73.8 KB	468 B	2	2025-10-17 15:39:22.121
-63	d4/5e3777	3951946	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	95ms	39.2%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	119.3 KB	1.4 KB	2	2025-10-17 15:39:24.128
-65	49/b9014d	3952290	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	37.6%	3 MB	3 MB	4.3 MB	4.3 MB	85.4 KB	648 B	2	2025-10-17 15:39:25.653
-64	e6/4eb766	3952434	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	1s	48.4%	2.9 MB	2.9 MB	4.3 MB	4.3 MB	391.6 KB	136.5 KB	2	2025-10-17 15:39:27.568
-67	3c/8ee85f	3952747	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	0ms	44.3%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	256.6 KB	2.9 KB	2	2025-10-17 15:39:29.694
-66	f7/c88f6a	3952809	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	0ms	42.9%	7 MB	7 MB	12.5 MB	12.5 MB	256.6 KB	2.9 KB	2	2025-10-17 15:39:30.145
-68	6e/16d0e0	3953023	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	33.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	85.4 KB	657 B	2	2025-10-17 15:39:32.317
-71	89/8660b0	3953058	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	109ms	40.3%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	119.6 KB	1.4 KB	2	2025-10-17 15:39:32.416
-69	48/10cdaa	3953530	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	0ms	49.3%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	391.1 KB	136.1 KB	2	2025-10-17 15:39:34.994
-70	ee/a81f26	3953539	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	0ms	37.1%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	256.7 KB	3 KB	2	2025-10-17 15:39:34.995
-73	a5/9af165	3953789	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	33.8%	3 MB	3 MB	4.3 MB	4.3 MB	85.4 KB	637 B	2	2025-10-17 15:39:37.744
-72	6f/78bcec	3953788	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	0ms	44.4%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	256.8 KB	3 KB	2	2025-10-17 15:39:37.739
-74	85/71ca89	3954385	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	0ms	51.3%	6.9 MB	6.9 MB	12.5 MB	12.5 MB	390.8 KB	135.8 KB	2	2025-10-17 15:39:40.802
-75	65/0479c2	3954395	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	98ms	34.5%	3 MB	3 MB	4.3 MB	4.3 MB	119.3 KB	1.3 KB	2	2025-10-17 15:39:40.901
-77	7a/3fd442	3955035	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	0ms	42.1%	3 MB	3 MB	4.3 MB	4.3 MB	256.5 KB	2.9 KB	2	2025-10-17 15:39:45.077
-76	7b/f1b211	3955000	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	0ms	41.7%	3 MB	3 MB	4.3 MB	4.3 MB	256.5 KB	2.9 KB	2	2025-10-17 15:39:44.977
-79	93/9525e6	3955344	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	COMPLETED	0	0ms	43.6%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	86.8 KB	1.2 KB	2	2025-10-17 15:39:47.220
-80	ae/612f8e	3955620	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	76ms	43.0%	3 MB	3 MB	4.3 MB	4.3 MB	125.2 KB	4.2 KB	2	2025-10-17 15:39:49.549
-78	57/f1ac83	3955278	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	COMPLETED	0	3s	83.1%	75.6 MB	75.6 MB	91.3 MB	91.3 MB	3 MB	2.7 MB	2	2025-10-17 15:39:47.121
-81	54/73dbfe	3956014	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	COMPLETED	0	0ms	57.5%	3 MB	3 MB	4.3 MB	4.3 MB	292.3 KB	10.3 KB	2	2025-10-17 15:39:52.071
-82	d7/b5238a	3956076	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	COMPLETED	0	0ms	52.2%	12.3 MB	12.3 MB	24.8 MB	24.8 MB	292.3 KB	10.3 KB	2	2025-10-17 15:39:52.635
-165	3f/faa3cb	3956340	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	30.1%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	85.4 KB	645 B	2	2025-10-17 15:39:54.890
-84	84/6592a7	3956306	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	0ms	40.0%	7.3 MB	7.3 MB	12.5 MB	12.5 MB	391.1 KB	136 KB	2	2025-10-17 15:39:54.789
-86	51/b3ff56	3956844	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	40.5%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	85.4 KB	642 B	2	2025-10-17 15:39:57.842
-83	fb/0d20be	3956816	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	80ms	37.0%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	119.7 KB	1.4 KB	2	2025-10-17 15:39:57.743
-87	0b/391a50	3957043	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	COMPLETED	0	1s	36.2%	3 MB	3 MB	4.3 MB	4.3 MB	256.8 KB	3 KB	2	2025-10-17 15:40:00.347
-85	88/2e27d3	3957012	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	COMPLETED	0	1s	38.5%	8.6 MB	8.6 MB	16.6 MB	16.6 MB	256.8 KB	3 KB	2	2025-10-17 15:40:00.246
-88	05/4ed726	3957661	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	105ms	42.9%	3 MB	3 MB	4.3 MB	4.3 MB	124.6 KB	4 KB	2	2025-10-17 15:40:03.061
-91	83/efd2c9	3958225	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	COMPLETED	0	0ms	50.0%	3.1 MB	3.1 MB	4.3 MB	4.3 MB	86.7 KB	1.2 KB	2	2025-10-17 15:40:06.418
-89	3b/3df659	3957774	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	COMPLETED	0	3s	80.5%	75.3 MB	75.3 MB	91 MB	91 MB	3 MB	2.7 MB	2	2025-10-17 15:40:04.078
-90	fd/546ad4	3958405	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	COMPLETED	0	0ms	43.9%	2.8 MB	2.8 MB	4.3 MB	4.3 MB	293.3 KB	10.2 KB	2	2025-10-17 15:40:08.218
-92	3d/814b06	3958525	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	COMPLETED	0	1s	53.5%	3 MB	3 MB	4.3 MB	4.3 MB	293.3 KB	10.2 KB	2	2025-10-17 15:40:09.318
-93	a5/a77e58	3958862	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	COMPLETED	0	1s	39.8%	1.9 MB	1.9 MB	4 MB	4 MB	390.7 KB	135.8 KB	2	2025-10-17 15:40:10.685
-96	7b/9bbb8d	3959045	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	COMPLETED	0	0ms	47.1%	3 MB	3 MB	4.3 MB	4.3 MB	85.4 KB	636 B	2	2025-10-17 15:40:12.635
-94	18/ea7999	3959200	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	COMPLETED	0	98ms	41.4%	3.2 MB	3.2 MB	4.3 MB	4.3 MB	119.3 KB	1.3 KB	2	2025-10-17 15:40:14.677
-95	bf/8cd43f	3959201	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	FAILED	1	3.2s	-	-	-	-	-	-	-	2	2025-10-17 15:40:14.678
-97	5d/0a9534	3959685	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	FAILED	1	3.3s	-	-	-	-	-	-	-	2	2025-10-17 15:40:17.952
-98	1b/638c93	3959686	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	COMPLETED	0	71ms	57.1%	3 MB	3 MB	4.3 MB	4.3 MB	125 KB	4.1 KB	2	2025-10-17 15:40:17.953
-38	bc/9b5fae	3949584	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	FAILED	125	2m 10s	-	-	-	-	-	-	-	2	2025-10-17 15:39:05.356
-40	14/c768d2	3948280	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	FAILED	125	2m 40s	-	-	-	-	-	-	-	2	2025-10-17 15:38:51.422
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deleted file mode 100644
index 7462fb5a..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores
+++ /dev/null
@@ -1,2 +0,0 @@
-id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS
-toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,802
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs
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diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores
deleted file mode 100644
index 3c944365..00000000
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+++ /dev/null
@@ -1,2 +0,0 @@
-id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS
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diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs
deleted file mode 100644
index f4695113..00000000
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+++ /dev/null
@@ -1,78 +0,0 @@
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-Cedric Notredame 
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deleted file mode 100644
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+++ /dev/null
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-/*
- * Nextflow CO2e Report Custom CSS
- */
-
-/* General page style */
-body {
-  padding-top: 56px;
-}
-
-/* Top bar */
-.navbar {
-  box-shadow: 0 .5rem 1rem #00000011;
-}
-
-.navbar-brand img {
-  width: 20px;
-  height: 20px;
-  margin: 0 10px 5px 0;
-}
-
-/* Top part until 'CO2e Footprint Measures' */
-.jumbotron {
-  background-repeat: no-repeat;
-  background-size: cover;
-  background-image:
-    linear-gradient(180deg, rgba(255,255,255,0) 0%, rgba(255,255,255,0.5) 10%, rgba(255,255,255,1) 50%),
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')
-}
-.jumbotron .container {
-  background-color: rgba(255,255,255,0.8);
-  border-radius: 0.3rem;
-  padding: 1rem 2rem;
-}
-
-.card-wrap {
-  gap: 1.5rem;
-  margin-left: -0.75rem;
-  margin-right: -0.75rem;
-}
-
-.metric-card {
-  width: 18%;
-  text-align: center;
-  flex: 1 1 200px;
-  min-width: 200px;
-}
-
-.metric-card svg {
-  margin: 0.5rem auto;
-  height:50px;
-}
-.metric {
-  font-size: 2rem;
-  font-weight: 300;
-  line-height: 1.2;
-}
-.metric-title {
-  font-size: 1rem;
-  margin-bottom: 0.5rem;
-  font-weight: 500;
-}
-
-pre {
-  margin-bottom: 0;
-}
-pre.nfcommand {
-  white-space: pre-wrap;
-  border: 1px solid #ccc;
-  padding: 10px 15px;
-  border-radius: 5px;
-  background-color: #F0F2F4;
-  font-size: 0.8rem;
-}
-
-table td {
-  max-width: 200px;
-  overflow-x: auto;
-}
-
-.script_block.short {
-  max-height: 30px;
-  overflow-y: hidden;
-  cursor: pointer;
-}
-
-footer {
-  background-color: #ededed;
-  margin: 50px 0 0;
-  padding: 20px 0;
-  border-top: 1px solid #cccccc;
-  color: #999999;
-  font-size: 0.8rem;
-}
-footer a {
-  color: #999999;
-  text-decoration: underline;
-}
-
-#nf-form-humanreadable {
-  margin-bottom: 1rem;
-}
-
-#tasks_table_filter {
-  display: flex;
-}
-#tasks_table_filter>.btn-group {
-  vertical-align: top;
-  margin-right: 1rem;
-  height: calc(1.8125rem + 3px);
-}
-#tasks_table_filter .buttons-colvisGroup {
-  padding: 0.2rem 0.75rem;
-}
-#tasks_table_filter .dt-buttons::before {
-  content: "Filter: ";
-  padding: 0.2rem 0.5rem;
-  font-size: 1.1rem;
-}
-
-.tab-pane {
-  display: block !important;
-  position: relative !important;
-  visibility: hidden;
-  overflow: hidden;
-  width: 100%;
-  height: 0;
-  z-index: 0;
-  opacity: 0;
-  transition: visibility 0s, opacity 0.3s ease-in-out;
-}
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-.tab-pane.active {
-  visibility: visible;
-  overflow: visible;
-  height: auto;
-  z-index: 1;
-  opacity: 1;
-}
-
-.expandable-label {
-  padding: 6px 12px;
-  border-radius: 8px;
-  border: 2px solid #badbcc;
-  background-color: #d1e7dd;
-  font-weight: bold;
-  color: #0f5132;
-  display: inline-block;
-}
-
-summary {
-  cursor: pointer;
-}
-  </style>
-
-</head>
-<body>
-  <nav id="nf-report-navbar" class="navbar navbar-expand-md navbar-light fixed-top bg-white">
-    <div class="container">
-      <a class="navbar-brand" href="#">
-        <img src="data:image/png;base64,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" alt="Nextflow logo (green lanes that are crossing in the middle)">
-      Nextflow CO<sub>2</sub>e Report
-    </a>
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-      <ul class="navbar-nav mr-auto">
-        <li class="nav-item"><a class="nav-link" href="#">Summary</a></li>
-        <li class="nav-item"><a class="nav-link" href="#resources">Resources</a></li>
-        <li class="nav-item"><a class="nav-link" href="#tasks">Tasks</a></li>
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-        [ecstatic_pesquet]
-    </code>
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-  </nav>
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-  <div class="jumbotron mb-0">
-    <div class="container">
-
-      <h1 class="display-3">Nextflow CO<sub>2</sub>e Footprint Report</h1>
-      <h2 class="text-muted mb-4"><samp>[ecstatic_pesquet]</samp> </h2>
-
-      
-          <div class="alert alert-danger mb-4">
-              <h4>Workflow execution completed unsuccessfully!</h4>
-              <p>The exit status of the task that caused the workflow execution to fail was: <code>1</code>.</p>
-              <p>The full error message was:</p>
-              <pre>Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)'
-
-Caused by:
-  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)` terminated with an error exit status (1)
-
-
-Command executed:
-
-  # check whether it is compressed
-  if [[ "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln" == *.gz ]]; then
-      unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa
-  else
-      mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa
-  fi
-  
-  export TEMP='./'
-  t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v "seq1" | grep -v '*' |         awk '{ print $4}' ORS="	"         >> "scores.txt"
-  
-  # Add metadata info to output file
-  echo "id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp" > "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
-  
-  # Add values
-  scores=$(awk '{sub(/[[:space:]]+$/, "")} 1' scores.txt | tr -s '[:blank:]' ',')
-  echo "seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores" >> "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores"
-  
-  cat <<-END_VERSIONS > versions.yml
-  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP":
-      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
-      pigz: $(echo $(pigz --version 2>&1) | sed 's/^.*pigz\w*//' ))
-  END_VERSIONS
-
-Command exit status:
-  1
-
-Command output:
-  (empty)
-
-Command error:
-  
-  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
-  
-  --ERROR: Could not access created dir /var/tmp//tco/ [FATAL:T-COFFEE]
-
-Work dir:
-  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work/bf/8cd43fe6d5b4df8d8791a4e6e8ffb9
-
-Container:
-  quay.io/biocontainers/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0
-
-Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line</pre>
-          </div>
-      
-
-      <dl>
-        <dt>Run times</dt>
-        <dd>
-          <span id="workflow_start">17-Oct-2025 15:38:01</span> - <span id="workflow_complete">17-Oct-2025 15:41:31</span>
-          (<span id="completed_fromnow"></span>duration: <strong>3m 30s</strong>)
-        </dd>
-
-        <dt>Nextflow command</dt>
-        <dd><pre class="nfcommand"><code>nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/params.json -ansi-log false -profile test,docker -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/work</code></pre></dd>
-      </dl>
-
-      <dl>
-        <dt>Nextflow version</dt>
-        <dd>version 25.04.6, build 5954 (01-07-2025 11:27 UTC)</dd>
-
-        <dt>nf-co2footprint plugin version</dt>
-        <dd>version 1.0.0</dd>
-      </dl>
-
-      <h3 class="mt-5">Total CO<sub>2</sub>e Footprint Measures</h3>
-      <div class="card-wrap d-flex flex-wrap mt-4 mb-5">
-        <div class="metric-card card p-1">
-          <span class="metric">1.06 g</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
-          <span class="metric-title">CO<sub>2</sub>e emissions</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">2.21 Wh</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
-          <span class="metric-title">Energy consumption</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">50min 46.78s</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
-          <span class="metric-title">Tree sequestration time</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">0.006</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
-          <span class="metric-title">km by car</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">0.002 %</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
-          <span class="metric-title">Flight Paris - London</span>
-        </div>
-      </div>
-
-      <details class="mt-5">
-        <summary>
-          <span class="expandable-label">
-            Without cached tasks:
-          </span>
-        </summary>
-        <div class="card-wrap d-flex flex-wrap mt-4 mb-5" >
-          <div class="metric-card card p-1">
-            <span class="metric">1.06 g</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
-            <span class="metric-title">CO<sub>2</sub>e emissions</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">2.21 Wh</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
-            <span class="metric-title">Energy consumption</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">50min 46.78s</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
-            <span class="metric-title">Tree sequestration time</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">0.006</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
-            <span class="metric-title">km by car</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">0.002 %</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
-            <span class="metric-title">Flight Paris - London</span>
-          </div>
-        </div>
-      </details>
-
-      
-
-    </div>
-  </div>
-
-  <div class="container">
-    <h2 id="resources" style="padding-top: 20px;" class="mb-3">CO<sub>2</sub>e Footprint Measures</h2>
-    <ul class="nav nav-tabs mb-3" id="co2eplot_tabs" role="tablist">
-      <li class="nav-item">
-        <a class="nav-link active" id="co2e-total-plot_tablink" data-toggle="tab" href="#co2e-total-plot_tabpanel" role="tab" aria-controls="co2e-total-plot_tabpanel" aria-expanded="false">
-          All tasks
-        </a>
-      </li>
-      <li class="nav-item">
-        <a class="nav-link" id="co2e-non-cached-plot_tablink" data-toggle="tab" href="#co2e-non-cached-plot_tabpanel" role="tab" aria-controls="co2e-non-cached-plot_tabpanel" aria-expanded="false">
-          Without cached tasks
-        </a>
-      </li>
-    </ul>
-    <div class="tab-content" id="co2eplot_tabcontent">
-      <div class="tab-pane fade show active" id="co2e-total-plot_tabpanel" role="tabpanel">
-        <div id="co2e-total-plot"></div>
-      </div>
-      <div class="tab-pane fade" id="co2e-non-cached-plot_tabpanel" role="tabpanel">
-        <div id="co2e-non-cached-plot"></div>
-      </div>
-    </div>
-    <p class="mt-3">The plot shows the distribution of CO<sub>2</sub>e emissions and corresponding energy consumptions for each workflow process. The values that are displayed when hovering over the plot refer to the CO<sub>2</sub>e emissions.</p>
-  </div>
-
-  <div class="container">
-    <h2 id="tasks" style="padding-top: 20px;">Tasks</h2>
-    <div id="tasks-present-table" class="mb-3">
-      <form class="form-inline" id="nf-form-humanreadable">
-        <label class="mr-sm-2" for="nf-table-humanreadable">Values shown as:</label>
-        <select class="custom-select mb-2 mr-sm-2 mb-sm-0" id="nf-table-humanreadable">
-          <option value="true">Human readable</option>
-          <option value="false">Raw values</option>
-        </select>
-      </form>
-    </div>
-    <div class="container-fluid">
-      <table class="table small table-striped" id="tasks_table"></table>
-    </div>
-    <div id="tasks-omitted-table">
-      (tasks table omitted because the dataset is too big)
-    </div>
-    <p class="mt-3">This table shows information about each task in the workflow. Use the search box on the right
-      to filter rows for specific values. Clicking headers will sort the table by that value and
-      scrolling side to side will reveal more columns.</p>
-  </div>
-
-  <div class="container my-5">
-    <div class="card shadow-sm">
-      <div class="card-body">
-        <h2 id="attribution-and-references" style="padding-top: 20px;">Data Attribution &amp; References</h2>
-        <ul class="pl-3 mb-0">
-          <li class="mb-3">
-            The calculation of these values is based on the carbon footprint computation method
-            developed in the
-            <a href="https://www.green-algorithms.org/" target="_blank" rel="noopener" style="color: #28a745">Green Algorithms</a> project.<br>
-            <span class="font-italic small">
-              Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
-              Adv. Sci. 2021, 2100707.
-              <a href="https://doi.org/10.1002/advs.202100707" target="_blank" rel="noopener">
-                https://doi.org/10.1002/advs.202100707
-              </a>
-            </span>
-          </li>
-          <li class="mb-3">
-            
-              The carbon intensity (CI) values used in the calculation originate from
-              <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">Electricity Maps</a>
-              under the
-              <a href="https://opendatacommons.org/licenses/odbl/1-0/" target="_blank" rel="noopener">Open Database License (ODbL)</a>.<br>
-              <span class="font-italic small">
-                Electricity Maps (2025). 2024 Yearly Carbon Intensity Data (Version January 27, 2025). Electricity Maps.
-                <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">
-                  https://www.electricitymaps.com
-                </a>
-              </span>
-            
-          </li>
-          <li class="mb-3">
-            The processors thermal design power (TDP) values used in the calculation originate from
-            <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">WikiChip</a>
-            under the
-            <a href="https://creativecommons.org/licenses/by-nc-sa/4.0/" target="_blank" rel="noopener">CC BY-NC-SA 4.0</a> license.<br>
-            <span class="font-italic small">
-              WikiChip LLC (2025). CPU Data including Thermal Design Power (TDP) (Version June 20, 2025).
-              WikiChip.
-              <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">
-                https://en.wikichip.org/wiki/WikiChip
-              </a>
-            </span>
-          </li>
-        </ul>
-      </div>
-    </div>
-  </div>
-
-  <div class="container">
-    <div id="options-table">
-      <h2 id="options" style="padding-top: 20px;">Options</h2>
-      <p class="mt-3 mb-3">This table shows the nf-co2footprint plugin options that were used to calculate the CO<sub>2</sub>e footprint measures.</p>
-    </div>
-    <div class="container-fluid">
-      <table class="table small table-striped" id="options_table"></table>
-    </div>
-  </div>
-
-  <footer>
-    <div class="container-fluid">
-      Generated by <a href="https://www.nextflow.io" target="_blank">Nextflow</a>, version 25.04.6
-    </div>
-  </footer>
-
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-  * Copyright 2011-2017 The Bootstrap Authors (https://github.com/twbs/bootstrap/graphs/contributors)
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-  */
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e&&i(t.prototype,e),n&&i(t,n),t},o=function(t,e){t.prototype=Object.create(e.prototype),t.prototype.constructor=t,t.__proto__=e},a=function(){var t="alert",n=e.fn[t],i={CLOSE:"close.bs.alert",CLOSED:"closed.bs.alert",CLICK_DATA_API:"click.bs.alert.data-api"},o={ALERT:"alert",FADE:"fade",SHOW:"show"},a=function(){function t(t){this._element=t}var n=t.prototype;return n.close=function(t){t=t||this._element;var e=this._getRootElement(t);this._triggerCloseEvent(e).isDefaultPrevented()||this._removeElement(e)},n.dispose=function(){e.removeData(this._element,"bs.alert"),this._element=null},n._getRootElement=function(t){var n=s.getSelectorFromElement(t),i=!1;return n&&(i=e(n)[0]),i||(i=e(t).closest("."+o.ALERT)[0]),i},n._triggerCloseEvent=function(t){var n=e.Event(i.CLOSE);return e(t).trigger(n),n},n._removeElement=function(t){var n=this;e(t).removeClass(o.SHOW),s.supportsTransitionEnd()&&e(t).hasClass(o.FADE)?e(t).one(s.TRANSITION_END,function(e){return n._destroyElement(t,e)}).emulateTransitionEnd(150):this._destroyElement(t)},n._destroyElement=function(t){e(t).detach().trigger(i.CLOSED).remove()},t._jQueryInterface=function(n){return this.each(function(){var i=e(this),s=i.data("bs.alert");s||(s=new t(this),i.data("bs.alert",s)),"close"===n&&s[n](this)})},t._handleDismiss=function(t){return function(e){e&&e.preventDefault(),t.close(this)}},r(t,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}}]),t}();return e(document).on(i.CLICK_DATA_API,{DISMISS:'[data-dismiss="alert"]'}.DISMISS,a._handleDismiss(new a)),e.fn[t]=a._jQueryInterface,e.fn[t].Constructor=a,e.fn[t].noConflict=function(){return e.fn[t]=n,a._jQueryInterface},a}(),l=function(){var t="button",n=e.fn[t],i={ACTIVE:"active",BUTTON:"btn",FOCUS:"focus"},s={DATA_TOGGLE_CARROT:'[data-toggle^="button"]',DATA_TOGGLE:'[data-toggle="buttons"]',INPUT:"input",ACTIVE:".active",BUTTON:".btn"},o={CLICK_DATA_API:"click.bs.button.data-api",FOCUS_BLUR_DATA_API:"focus.bs.button.data-api blur.bs.button.data-api"},a=function(){function t(t){this._element=t}var n=t.prototype;return n.toggle=function(){var t=!0,n=!0,r=e(this._element).closest(s.DATA_TOGGLE)[0];if(r){var o=e(this._element).find(s.INPUT)[0];if(o){if("radio"===o.type)if(o.checked&&e(this._element).hasClass(i.ACTIVE))t=!1;else{var a=e(r).find(s.ACTIVE)[0];a&&e(a).removeClass(i.ACTIVE)}if(t){if(o.hasAttribute("disabled")||r.hasAttribute("disabled")||o.classList.contains("disabled")||r.classList.contains("disabled"))return;o.checked=!e(this._element).hasClass(i.ACTIVE),e(o).trigger("change")}o.focus(),n=!1}}n&&this._element.setAttribute("aria-pressed",!e(this._element).hasClass(i.ACTIVE)),t&&e(this._element).toggleClass(i.ACTIVE)},n.dispose=function(){e.removeData(this._element,"bs.button"),this._element=null},t._jQueryInterface=function(n){return this.each(function(){var i=e(this).data("bs.button");i||(i=new t(this),e(this).data("bs.button",i)),"toggle"===n&&i[n]()})},r(t,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}}]),t}();return e(document).on(o.CLICK_DATA_API,s.DATA_TOGGLE_CARROT,function(t){t.preventDefault();var n=t.target;e(n).hasClass(i.BUTTON)||(n=e(n).closest(s.BUTTON)),a._jQueryInterface.call(e(n),"toggle")}).on(o.FOCUS_BLUR_DATA_API,s.DATA_TOGGLE_CARROT,function(t){var n=e(t.target).closest(s.BUTTON)[0];e(n).toggleClass(i.FOCUS,/^focus(in)?$/.test(t.type))}),e.fn[t]=a._jQueryInterface,e.fn[t].Constructor=a,e.fn[t].noConflict=function(){return e.fn[t]=n,a._jQueryInterface},a}(),h=function(){var t="carousel",n="bs.carousel",i="."+n,o=e.fn[t],a={interval:5e3,keyboard:!0,slide:!1,pause:"hover",wrap:!0},l={interval:"(number|boolean)",keyboard:"boolean",slide:"(boolean|string)",pause:"(string|boolean)",wrap:"boolean"},h={NEXT:"next",PREV:"prev",LEFT:"left",RIGHT:"right"},c={SLIDE:"slide"+i,SLID:"slid"+i,KEYDOWN:"keydown"+i,MOUSEENTER:"mouseenter"+i,MOUSELEAVE:"mouseleave"+i,TOUCHEND:"touchend"+i,LOAD_DATA_API:"load.bs.carousel.data-api",CLICK_DATA_API:"click.bs.carousel.data-api"},u={CAROUSEL:"carousel",ACTIVE:"active",SLIDE:"slide",RIGHT:"carousel-item-right",LEFT:"carousel-item-left",NEXT:"carousel-item-next",PREV:"carousel-item-prev",ITEM:"carousel-item"},d={ACTIVE:".active",ACTIVE_ITEM:".active.carousel-item",ITEM:".carousel-item",NEXT_PREV:".carousel-item-next, .carousel-item-prev",INDICATORS:".carousel-indicators",DATA_SLIDE:"[data-slide], [data-slide-to]",DATA_RIDE:'[data-ride="carousel"]'},f=function(){function o(t,n){this._items=null,this._interval=null,this._activeElement=null,this._isPaused=!1,this._isSliding=!1,this.touchTimeout=null,this._config=this._getConfig(n),this._element=e(t)[0],this._indicatorsElement=e(this._element).find(d.INDICATORS)[0],this._addEventListeners()}var f=o.prototype;return f.next=function(){this._isSliding||this._slide(h.NEXT)},f.nextWhenVisible=function(){!document.hidden&&e(this._element).is(":visible")&&"hidden"!==e(this._element).css("visibility")&&this.next()},f.prev=function(){this._isSliding||this._slide(h.PREV)},f.pause=function(t){t||(this._isPaused=!0),e(this._element).find(d.NEXT_PREV)[0]&&s.supportsTransitionEnd()&&(s.triggerTransitionEnd(this._element),this.cycle(!0)),clearInterval(this._interval),this._interval=null},f.cycle=function(t){t||(this._isPaused=!1),this._interval&&(clearInterval(this._interval),this._interval=null),this._config.interval&&!this._isPaused&&(this._interval=setInterval((document.visibilityState?this.nextWhenVisible:this.next).bind(this),this._config.interval))},f.to=function(t){var n=this;this._activeElement=e(this._element).find(d.ACTIVE_ITEM)[0];var i=this._getItemIndex(this._activeElement);if(!(t>this._items.length-1||t<0))if(this._isSliding)e(this._element).one(c.SLID,function(){return n.to(t)});else{if(i===t)return this.pause(),void this.cycle();var s=t>i?h.NEXT:h.PREV;this._slide(s,this._items[t])}},f.dispose=function(){e(this._element).off(i),e.removeData(this._element,n),this._items=null,this._config=null,this._element=null,this._interval=null,this._isPaused=null,this._isSliding=null,this._activeElement=null,this._indicatorsElement=null},f._getConfig=function(n){return n=e.extend({},a,n),s.typeCheckConfig(t,n,l),n},f._addEventListeners=function(){var t=this;this._config.keyboard&&e(this._element).on(c.KEYDOWN,function(e){return t._keydown(e)}),"hover"===this._config.pause&&(e(this._element).on(c.MOUSEENTER,function(e){return t.pause(e)}).on(c.MOUSELEAVE,function(e){return t.cycle(e)}),"ontouchstart"in document.documentElement&&e(this._element).on(c.TOUCHEND,function(){t.pause(),t.touchTimeout&&clearTimeout(t.touchTimeout),t.touchTimeout=setTimeout(function(e){return t.cycle(e)},500+t._config.interval)}))},f._keydown=function(t){if(!/input|textarea/i.test(t.target.tagName))switch(t.which){case 37:t.preventDefault(),this.prev();break;case 39:t.preventDefault(),this.next();break;default:return}},f._getItemIndex=function(t){return this._items=e.makeArray(e(t).parent().find(d.ITEM)),this._items.indexOf(t)},f._getItemByDirection=function(t,e){var n=t===h.NEXT,i=t===h.PREV,s=this._getItemIndex(e),r=this._items.length-1;if((i&&0===s||n&&s===r)&&!this._config.wrap)return e;var o=(s+(t===h.PREV?-1:1))%this._items.length;return-1===o?this._items[this._items.length-1]:this._items[o]},f._triggerSlideEvent=function(t,n){var i=this._getItemIndex(t),s=this._getItemIndex(e(this._element).find(d.ACTIVE_ITEM)[0]),r=e.Event(c.SLIDE,{relatedTarget:t,direction:n,from:s,to:i});return e(this._element).trigger(r),r},f._setActiveIndicatorElement=function(t){if(this._indicatorsElement){e(this._indicatorsElement).find(d.ACTIVE).removeClass(u.ACTIVE);var n=this._indicatorsElement.children[this._getItemIndex(t)];n&&e(n).addClass(u.ACTIVE)}},f._slide=function(t,n){var i,r,o,a=this,l=e(this._element).find(d.ACTIVE_ITEM)[0],f=this._getItemIndex(l),_=n||l&&this._getItemByDirection(t,l),g=this._getItemIndex(_),m=Boolean(this._interval);if(t===h.NEXT?(i=u.LEFT,r=u.NEXT,o=h.LEFT):(i=u.RIGHT,r=u.PREV,o=h.RIGHT),_&&e(_).hasClass(u.ACTIVE))this._isSliding=!1;else if(!this._triggerSlideEvent(_,o).isDefaultPrevented()&&l&&_){this._isSliding=!0,m&&this.pause(),this._setActiveIndicatorElement(_);var p=e.Event(c.SLID,{relatedTarget:_,direction:o,from:f,to:g});s.supportsTransitionEnd()&&e(this._element).hasClass(u.SLIDE)?(e(_).addClass(r),s.reflow(_),e(l).addClass(i),e(_).addClass(i),e(l).one(s.TRANSITION_END,function(){e(_).removeClass(i+" "+r).addClass(u.ACTIVE),e(l).removeClass(u.ACTIVE+" "+r+" "+i),a._isSliding=!1,setTimeout(function(){return e(a._element).trigger(p)},0)}).emulateTransitionEnd(600)):(e(l).removeClass(u.ACTIVE),e(_).addClass(u.ACTIVE),this._isSliding=!1,e(this._element).trigger(p)),m&&this.cycle()}},o._jQueryInterface=function(t){return this.each(function(){var i=e(this).data(n),s=e.extend({},a,e(this).data());"object"==typeof t&&e.extend(s,t);var r="string"==typeof t?t:s.slide;if(i||(i=new o(this,s),e(this).data(n,i)),"number"==typeof t)i.to(t);else if("string"==typeof r){if("undefined"==typeof i[r])throw new Error('No method named "'+r+'"');i[r]()}else s.interval&&(i.pause(),i.cycle())})},o._dataApiClickHandler=function(t){var i=s.getSelectorFromElement(this);if(i){var r=e(i)[0];if(r&&e(r).hasClass(u.CAROUSEL)){var a=e.extend({},e(r).data(),e(this).data()),l=this.getAttribute("data-slide-to");l&&(a.interval=!1),o._jQueryInterface.call(e(r),a),l&&e(r).data(n).to(l),t.preventDefault()}}},r(o,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return a}}]),o}();return e(document).on(c.CLICK_DATA_API,d.DATA_SLIDE,f._dataApiClickHandler),e(window).on(c.LOAD_DATA_API,function(){e(d.DATA_RIDE).each(function(){var t=e(this);f._jQueryInterface.call(t,t.data())})}),e.fn[t]=f._jQueryInterface,e.fn[t].Constructor=f,e.fn[t].noConflict=function(){return e.fn[t]=o,f._jQueryInterface},f}(),c=function(){var t="collapse",n="bs.collapse",i=e.fn[t],o={toggle:!0,parent:""},a={toggle:"boolean",parent:"(string|element)"},l={SHOW:"show.bs.collapse",SHOWN:"shown.bs.collapse",HIDE:"hide.bs.collapse",HIDDEN:"hidden.bs.collapse",CLICK_DATA_API:"click.bs.collapse.data-api"},h={SHOW:"show",COLLAPSE:"collapse",COLLAPSING:"collapsing",COLLAPSED:"collapsed"},c={WIDTH:"width",HEIGHT:"height"},u={ACTIVES:".show, .collapsing",DATA_TOGGLE:'[data-toggle="collapse"]'},d=function(){function i(t,n){this._isTransitioning=!1,this._element=t,this._config=this._getConfig(n),this._triggerArray=e.makeArray(e('[data-toggle="collapse"][href="#'+t.id+'"],[data-toggle="collapse"][data-target="#'+t.id+'"]'));for(var i=e(u.DATA_TOGGLE),r=0;r<i.length;r++){var o=i[r],a=s.getSelectorFromElement(o);null!==a&&e(a).filter(t).length>0&&this._triggerArray.push(o)}this._parent=this._config.parent?this._getParent():null,this._config.parent||this._addAriaAndCollapsedClass(this._element,this._triggerArray),this._config.toggle&&this.toggle()}var d=i.prototype;return d.toggle=function(){e(this._element).hasClass(h.SHOW)?this.hide():this.show()},d.show=function(){var t=this;if(!this._isTransitioning&&!e(this._element).hasClass(h.SHOW)){var r,o;if(this._parent&&((r=e.makeArray(e(this._parent).children().children(u.ACTIVES))).length||(r=null)),!(r&&(o=e(r).data(n))&&o._isTransitioning)){var a=e.Event(l.SHOW);if(e(this._element).trigger(a),!a.isDefaultPrevented()){r&&(i._jQueryInterface.call(e(r),"hide"),o||e(r).data(n,null));var c=this._getDimension();e(this._element).removeClass(h.COLLAPSE).addClass(h.COLLAPSING),this._element.style[c]=0,this._triggerArray.length&&e(this._triggerArray).removeClass(h.COLLAPSED).attr("aria-expanded",!0),this.setTransitioning(!0);var d=function(){e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).addClass(h.SHOW),t._element.style[c]="",t.setTransitioning(!1),e(t._element).trigger(l.SHOWN)};if(s.supportsTransitionEnd()){var f="scroll"+(c[0].toUpperCase()+c.slice(1));e(this._element).one(s.TRANSITION_END,d).emulateTransitionEnd(600),this._element.style[c]=this._element[f]+"px"}else d()}}}},d.hide=function(){var t=this;if(!this._isTransitioning&&e(this._element).hasClass(h.SHOW)){var n=e.Event(l.HIDE);if(e(this._element).trigger(n),!n.isDefaultPrevented()){var i=this._getDimension();if(this._element.style[i]=this._element.getBoundingClientRect()[i]+"px",s.reflow(this._element),e(this._element).addClass(h.COLLAPSING).removeClass(h.COLLAPSE).removeClass(h.SHOW),this._triggerArray.length)for(var r=0;r<this._triggerArray.length;r++){var o=this._triggerArray[r],a=s.getSelectorFromElement(o);null!==a&&(e(a).hasClass(h.SHOW)||e(o).addClass(h.COLLAPSED).attr("aria-expanded",!1))}this.setTransitioning(!0);var c=function(){t.setTransitioning(!1),e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).trigger(l.HIDDEN)};this._element.style[i]="",s.supportsTransitionEnd()?e(this._element).one(s.TRANSITION_END,c).emulateTransitionEnd(600):c()}}},d.setTransitioning=function(t){this._isTransitioning=t},d.dispose=function(){e.removeData(this._element,n),this._config=null,this._parent=null,this._element=null,this._triggerArray=null,this._isTransitioning=null},d._getConfig=function(n){return n=e.extend({},o,n),n.toggle=Boolean(n.toggle),s.typeCheckConfig(t,n,a),n},d._getDimension=function(){return e(this._element).hasClass(c.WIDTH)?c.WIDTH:c.HEIGHT},d._getParent=function(){var t=this,n=null;s.isElement(this._config.parent)?(n=this._config.parent,"undefined"!=typeof this._config.parent.jquery&&(n=this._config.parent[0])):n=e(this._config.parent)[0];var r='[data-toggle="collapse"][data-parent="'+this._config.parent+'"]';return e(n).find(r).each(function(e,n){t._addAriaAndCollapsedClass(i._getTargetFromElement(n),[n])}),n},d._addAriaAndCollapsedClass=function(t,n){if(t){var i=e(t).hasClass(h.SHOW);n.length&&e(n).toggleClass(h.COLLAPSED,!i).attr("aria-expanded",i)}},i._getTargetFromElement=function(t){var n=s.getSelectorFromElement(t);return n?e(n)[0]:null},i._jQueryInterface=function(t){return this.each(function(){var s=e(this),r=s.data(n),a=e.extend({},o,s.data(),"object"==typeof t&&t);if(!r&&a.toggle&&/show|hide/.test(t)&&(a.toggle=!1),r||(r=new i(this,a),s.data(n,r)),"string"==typeof t){if("undefined"==typeof r[t])throw new Error('No method named "'+t+'"');r[t]()}})},r(i,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return o}}]),i}();return e(document).on(l.CLICK_DATA_API,u.DATA_TOGGLE,function(t){"A"===t.currentTarget.tagName&&t.preventDefault();var i=e(this),r=s.getSelectorFromElement(this);e(r).each(function(){var t=e(this),s=t.data(n)?"toggle":i.data();d._jQueryInterface.call(t,s)})}),e.fn[t]=d._jQueryInterface,e.fn[t].Constructor=d,e.fn[t].noConflict=function(){return e.fn[t]=i,d._jQueryInterface},d}(),u=function(){if("undefined"==typeof n)throw new Error("Bootstrap dropdown require Popper.js (https://popper.js.org)");var t="dropdown",i="bs.dropdown",o="."+i,a=e.fn[t],l=new RegExp("38|40|27"),h={HIDE:"hide"+o,HIDDEN:"hidden"+o,SHOW:"show"+o,SHOWN:"shown"+o,CLICK:"click"+o,CLICK_DATA_API:"click.bs.dropdown.data-api",KEYDOWN_DATA_API:"keydown.bs.dropdown.data-api",KEYUP_DATA_API:"keyup.bs.dropdown.data-api"},c={DISABLED:"disabled",SHOW:"show",DROPUP:"dropup",MENURIGHT:"dropdown-menu-right",MENULEFT:"dropdown-menu-left"},u={DATA_TOGGLE:'[data-toggle="dropdown"]',FORM_CHILD:".dropdown form",MENU:".dropdown-menu",NAVBAR_NAV:".navbar-nav",VISIBLE_ITEMS:".dropdown-menu .dropdown-item:not(.disabled)"},d={TOP:"top-start",TOPEND:"top-end",BOTTOM:"bottom-start",BOTTOMEND:"bottom-end"},f={offset:0,flip:!0},_={offset:"(number|string|function)",flip:"boolean"},g=function(){function a(t,e){this._element=t,this._popper=null,this._config=this._getConfig(e),this._menu=this._getMenuElement(),this._inNavbar=this._detectNavbar(),this._addEventListeners()}var g=a.prototype;return g.toggle=function(){if(!this._element.disabled&&!e(this._element).hasClass(c.DISABLED)){var t=a._getParentFromElement(this._element),i=e(this._menu).hasClass(c.SHOW);if(a._clearMenus(),!i){var s={relatedTarget:this._element},r=e.Event(h.SHOW,s);if(e(t).trigger(r),!r.isDefaultPrevented()){var o=this._element;e(t).hasClass(c.DROPUP)&&(e(this._menu).hasClass(c.MENULEFT)||e(this._menu).hasClass(c.MENURIGHT))&&(o=t),this._popper=new n(o,this._menu,this._getPopperConfig()),"ontouchstart"in document.documentElement&&!e(t).closest(u.NAVBAR_NAV).length&&e("body").children().on("mouseover",null,e.noop),this._element.focus(),this._element.setAttribute("aria-expanded",!0),e(this._menu).toggleClass(c.SHOW),e(t).toggleClass(c.SHOW).trigger(e.Event(h.SHOWN,s))}}}},g.dispose=function(){e.removeData(this._element,i),e(this._element).off(o),this._element=null,this._menu=null,null!==this._popper&&this._popper.destroy(),this._popper=null},g.update=function(){this._inNavbar=this._detectNavbar(),null!==this._popper&&this._popper.scheduleUpdate()},g._addEventListeners=function(){var t=this;e(this._element).on(h.CLICK,function(e){e.preventDefault(),e.stopPropagation(),t.toggle()})},g._getConfig=function(n){return n=e.extend({},this.constructor.Default,e(this._element).data(),n),s.typeCheckConfig(t,n,this.constructor.DefaultType),n},g._getMenuElement=function(){if(!this._menu){var t=a._getParentFromElement(this._element);this._menu=e(t).find(u.MENU)[0]}return this._menu},g._getPlacement=function(){var t=e(this._element).parent(),n=d.BOTTOM;return t.hasClass(c.DROPUP)?(n=d.TOP,e(this._menu).hasClass(c.MENURIGHT)&&(n=d.TOPEND)):e(this._menu).hasClass(c.MENURIGHT)&&(n=d.BOTTOMEND),n},g._detectNavbar=function(){return e(this._element).closest(".navbar").length>0},g._getPopperConfig=function(){var t=this,n={};"function"==typeof this._config.offset?n.fn=function(n){return n.offsets=e.extend({},n.offsets,t._config.offset(n.offsets)||{}),n}:n.offset=this._config.offset;var i={placement:this._getPlacement(),modifiers:{offset:n,flip:{enabled:this._config.flip}}};return this._inNavbar&&(i.modifiers.applyStyle={enabled:!this._inNavbar}),i},a._jQueryInterface=function(t){return this.each(function(){var n=e(this).data(i),s="object"==typeof t?t:null;if(n||(n=new a(this,s),e(this).data(i,n)),"string"==typeof t){if("undefined"==typeof n[t])throw new Error('No method named "'+t+'"');n[t]()}})},a._clearMenus=function(t){if(!t||3!==t.which&&("keyup"!==t.type||9===t.which))for(var n=e.makeArray(e(u.DATA_TOGGLE)),s=0;s<n.length;s++){var r=a._getParentFromElement(n[s]),o=e(n[s]).data(i),l={relatedTarget:n[s]};if(o){var d=o._menu;if(e(r).hasClass(c.SHOW)&&!(t&&("click"===t.type&&/input|textarea/i.test(t.target.tagName)||"keyup"===t.type&&9===t.which)&&e.contains(r,t.target))){var f=e.Event(h.HIDE,l);e(r).trigger(f),f.isDefaultPrevented()||("ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),n[s].setAttribute("aria-expanded","false"),e(d).removeClass(c.SHOW),e(r).removeClass(c.SHOW).trigger(e.Event(h.HIDDEN,l)))}}}},a._getParentFromElement=function(t){var n,i=s.getSelectorFromElement(t);return i&&(n=e(i)[0]),n||t.parentNode},a._dataApiKeydownHandler=function(t){if(!(!l.test(t.which)||/button/i.test(t.target.tagName)&&32===t.which||/input|textarea/i.test(t.target.tagName)||(t.preventDefault(),t.stopPropagation(),this.disabled||e(this).hasClass(c.DISABLED)))){var n=a._getParentFromElement(this),i=e(n).hasClass(c.SHOW);if((i||27===t.which&&32===t.which)&&(!i||27!==t.which&&32!==t.which)){var s=e(n).find(u.VISIBLE_ITEMS).get();if(s.length){var r=s.indexOf(t.target);38===t.which&&r>0&&r--,40===t.which&&r<s.length-1&&r++,r<0&&(r=0),s[r].focus()}}else{if(27===t.which){var o=e(n).find(u.DATA_TOGGLE)[0];e(o).trigger("focus")}e(this).trigger("click")}}},r(a,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return f}},{key:"DefaultType",get:function(){return _}}]),a}();return e(document).on(h.KEYDOWN_DATA_API,u.DATA_TOGGLE,g._dataApiKeydownHandler).on(h.KEYDOWN_DATA_API,u.MENU,g._dataApiKeydownHandler).on(h.CLICK_DATA_API+" "+h.KEYUP_DATA_API,g._clearMenus).on(h.CLICK_DATA_API,u.DATA_TOGGLE,function(t){t.preventDefault(),t.stopPropagation(),g._jQueryInterface.call(e(this),"toggle")}).on(h.CLICK_DATA_API,u.FORM_CHILD,function(t){t.stopPropagation()}),e.fn[t]=g._jQueryInterface,e.fn[t].Constructor=g,e.fn[t].noConflict=function(){return e.fn[t]=a,g._jQueryInterface},g}(),d=function(){var t="modal",n=".bs.modal",i=e.fn[t],o={backdrop:!0,keyboard:!0,focus:!0,show:!0},a={backdrop:"(boolean|string)",keyboard:"boolean",focus:"boolean",show:"boolean"},l={HIDE:"hide.bs.modal",HIDDEN:"hidden.bs.modal",SHOW:"show.bs.modal",SHOWN:"shown.bs.modal",FOCUSIN:"focusin.bs.modal",RESIZE:"resize.bs.modal",CLICK_DISMISS:"click.dismiss.bs.modal",KEYDOWN_DISMISS:"keydown.dismiss.bs.modal",MOUSEUP_DISMISS:"mouseup.dismiss.bs.modal",MOUSEDOWN_DISMISS:"mousedown.dismiss.bs.modal",CLICK_DATA_API:"click.bs.modal.data-api"},h={SCROLLBAR_MEASURER:"modal-scrollbar-measure",BACKDROP:"modal-backdrop",OPEN:"modal-open",FADE:"fade",SHOW:"show"},c={DIALOG:".modal-dialog",DATA_TOGGLE:'[data-toggle="modal"]',DATA_DISMISS:'[data-dismiss="modal"]',FIXED_CONTENT:".fixed-top, .fixed-bottom, .is-fixed, .sticky-top",STICKY_CONTENT:".sticky-top",NAVBAR_TOGGLER:".navbar-toggler"},u=function(){function i(t,n){this._config=this._getConfig(n),this._element=t,this._dialog=e(t).find(c.DIALOG)[0],this._backdrop=null,this._isShown=!1,this._isBodyOverflowing=!1,this._ignoreBackdropClick=!1,this._originalBodyPadding=0,this._scrollbarWidth=0}var u=i.prototype;return u.toggle=function(t){return this._isShown?this.hide():this.show(t)},u.show=function(t){var n=this;if(!this._isTransitioning&&!this._isShown){s.supportsTransitionEnd()&&e(this._element).hasClass(h.FADE)&&(this._isTransitioning=!0);var i=e.Event(l.SHOW,{relatedTarget:t});e(this._element).trigger(i),this._isShown||i.isDefaultPrevented()||(this._isShown=!0,this._checkScrollbar(),this._setScrollbar(),this._adjustDialog(),e(document.body).addClass(h.OPEN),this._setEscapeEvent(),this._setResizeEvent(),e(this._element).on(l.CLICK_DISMISS,c.DATA_DISMISS,function(t){return 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n._hideModal(t)}).emulateTransitionEnd(300):this._hideModal()}}},u.dispose=function(){e.removeData(this._element,"bs.modal"),e(window,document,this._element,this._backdrop).off(n),this._config=null,this._element=null,this._dialog=null,this._backdrop=null,this._isShown=null,this._isBodyOverflowing=null,this._ignoreBackdropClick=null,this._scrollbarWidth=null},u.handleUpdate=function(){this._adjustDialog()},u._getConfig=function(n){return n=e.extend({},o,n),s.typeCheckConfig(t,n,a),n},u._showElement=function(t){var n=this,i=s.supportsTransitionEnd()&&e(this._element).hasClass(h.FADE);this._element.parentNode&&this._element.parentNode.nodeType===Node.ELEMENT_NODE||document.body.appendChild(this._element),this._element.style.display="block",this._element.removeAttribute("aria-hidden"),this._element.scrollTop=0,i&&s.reflow(this._element),e(this._element).addClass(h.SHOW),this._config.focus&&this._enforceFocus();var r=e.Event(l.SHOWN,{relatedTarget:t}),o=function(){n._config.focus&&n._element.focus(),n._isTransitioning=!1,e(n._element).trigger(r)};i?e(this._dialog).one(s.TRANSITION_END,o).emulateTransitionEnd(300):o()},u._enforceFocus=function(){var t=this;e(document).off(l.FOCUSIN).on(l.FOCUSIN,function(n){document===n.target||t._element===n.target||e(t._element).has(n.target).length||t._element.focus()})},u._setEscapeEvent=function(){var t=this;this._isShown&&this._config.keyboard?e(this._element).on(l.KEYDOWN_DISMISS,function(e){27===e.which&&(e.preventDefault(),t.hide())}):this._isShown||e(this._element).off(l.KEYDOWN_DISMISS)},u._setResizeEvent=function(){var t=this;this._isShown?e(window).on(l.RESIZE,function(e){return t.handleUpdate(e)}):e(window).off(l.RESIZE)},u._hideModal=function(){var t=this;this._element.style.display="none",this._element.setAttribute("aria-hidden",!0),this._isTransitioning=!1,this._showBackdrop(function(){e(document.body).removeClass(h.OPEN),t._resetAdjustments(),t._resetScrollbar(),e(t._element).trigger(l.HIDDEN)})},u._removeBackdrop=function(){this._backdrop&&(e(this._backdrop).remove(),this._backdrop=null)},u._showBackdrop=function(t){var n=this,i=e(this._element).hasClass(h.FADE)?h.FADE:"";if(this._isShown&&this._config.backdrop){var r=s.supportsTransitionEnd()&&i;if(this._backdrop=document.createElement("div"),this._backdrop.className=h.BACKDROP,i&&e(this._backdrop).addClass(i),e(this._backdrop).appendTo(document.body),e(this._element).on(l.CLICK_DISMISS,function(t){n._ignoreBackdropClick?n._ignoreBackdropClick=!1:t.target===t.currentTarget&&("static"===n._config.backdrop?n._element.focus():n.hide())}),r&&s.reflow(this._backdrop),e(this._backdrop).addClass(h.SHOW),!t)return;if(!r)return void 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t=this;if(this._isBodyOverflowing){e(c.FIXED_CONTENT).each(function(n,i){var s=e(i)[0].style.paddingRight,r=e(i).css("padding-right");e(i).data("padding-right",s).css("padding-right",parseFloat(r)+t._scrollbarWidth+"px")}),e(c.STICKY_CONTENT).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)-t._scrollbarWidth+"px")}),e(c.NAVBAR_TOGGLER).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)+t._scrollbarWidth+"px")});var n=document.body.style.paddingRight,i=e("body").css("padding-right");e("body").data("padding-right",n).css("padding-right",parseFloat(i)+this._scrollbarWidth+"px")}},u._resetScrollbar=function(){e(c.FIXED_CONTENT).each(function(t,n){var i=e(n).data("padding-right");"undefined"!=typeof i&&e(n).css("padding-right",i).removeData("padding-right")}),e(c.STICKY_CONTENT+", 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r=e.contains(this.element.ownerDocument.documentElement,this.element);if(i.isDefaultPrevented()||!r)return;var a=this.getTipElement(),l=s.getUID(this.constructor.NAME);a.setAttribute("id",l),this.element.setAttribute("aria-describedby",l),this.setContent(),this.config.animation&&e(a).addClass(f.FADE);var h="function"==typeof this.config.placement?this.config.placement.call(this,a,this.element):this.config.placement,c=this._getAttachment(h);this.addAttachmentClass(c);var d=!1===this.config.container?document.body:e(this.config.container);e(a).data(this.constructor.DATA_KEY,this),e.contains(this.element.ownerDocument.documentElement,this.tip)||e(a).appendTo(d),e(this.element).trigger(this.constructor.Event.INSERTED),this._popper=new n(this.element,a,{placement:c,modifiers:{offset:{offset:this.config.offset},flip:{behavior:this.config.fallbackPlacement},arrow:{element:_.ARROW}},onCreate:function(e){e.originalPlacement!==e.placement&&t._handlePopperPlacementChange(e)},onUpdate:function(e){t._handlePopperPlacementChange(e)}}),e(a).addClass(f.SHOW),"ontouchstart"in document.documentElement&&e("body").children().on("mouseover",null,e.noop);var g=function(){t.config.animation&&t._fixTransition();var n=t._hoverState;t._hoverState=null,e(t.element).trigger(t.constructor.Event.SHOWN),n===u.OUT&&t._leave(null,t)};s.supportsTransitionEnd()&&e(this.tip).hasClass(f.FADE)?e(this.tip).one(s.TRANSITION_END,g).emulateTransitionEnd(o._TRANSITION_DURATION):g()}},m.hide=function(t){var n=this,i=this.getTipElement(),r=e.Event(this.constructor.Event.HIDE),o=function(){n._hoverState!==u.SHOW&&i.parentNode&&i.parentNode.removeChild(i),n._cleanTipClass(),n.element.removeAttribute("aria-describedby"),e(n.element).trigger(n.constructor.Event.HIDDEN),null!==n._popper&&n._popper.destroy(),t&&t()};e(this.element).trigger(r),r.isDefaultPrevented()||(e(i).removeClass(f.SHOW),"ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),this._activeTrigger[g.CLICK]=!1,this._activeTrigger[g.FOCUS]=!1,this._activeTrigger[g.HOVER]=!1,s.supportsTransitionEnd()&&e(this.tip).hasClass(f.FADE)?e(i).one(s.TRANSITION_END,o).emulateTransitionEnd(150):o(),this._hoverState="")},m.update=function(){null!==this._popper&&this._popper.scheduleUpdate()},m.isWithContent=function(){return Boolean(this.getTitle())},m.addAttachmentClass=function(t){e(this.getTipElement()).addClass("bs-tooltip-"+t)},m.getTipElement=function(){return this.tip=this.tip||e(this.config.template)[0],this.tip},m.setContent=function(){var t=e(this.getTipElement());this.setElementContent(t.find(_.TOOLTIP_INNER),this.getTitle()),t.removeClass(f.FADE+" "+f.SHOW)},m.setElementContent=function(t,n){var i=this.config.html;"object"==typeof n&&(n.nodeType||n.jquery)?i?e(n).parent().is(t)||t.empty().append(n):t.text(e(n).text()):t[i?"html":"text"](n)},m.getTitle=function(){var t=this.element.getAttribute("data-original-title");return t||(t="function"==typeof this.config.title?this.config.title.call(this.element):this.config.title),t},m._getAttachment=function(t){return h[t.toUpperCase()]},m._setListeners=function(){var t=this;this.config.trigger.split(" ").forEach(function(n){if("click"===n)e(t.element).on(t.constructor.Event.CLICK,t.config.selector,function(e){return t.toggle(e)});else if(n!==g.MANUAL){var i=n===g.HOVER?t.constructor.Event.MOUSEENTER:t.constructor.Event.FOCUSIN,s=n===g.HOVER?t.constructor.Event.MOUSELEAVE:t.constructor.Event.FOCUSOUT;e(t.element).on(i,t.config.selector,function(e){return t._enter(e)}).on(s,t.config.selector,function(e){return t._leave(e)})}e(t.element).closest(".modal").on("hide.bs.modal",function(){return t.hide()})}),this.config.selector?this.config=e.extend({},this.config,{trigger:"manual",selector:""}):this._fixTitle()},m._fixTitle=function(){var t=typeof this.element.getAttribute("data-original-title");(this.element.getAttribute("title")||"string"!==t)&&(this.element.setAttribute("data-original-title",this.element.getAttribute("title")||""),this.element.setAttribute("title",""))},m._enter=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusin"===t.type?g.FOCUS:g.HOVER]=!0),e(n.getTipElement()).hasClass(f.SHOW)||n._hoverState===u.SHOW?n._hoverState=u.SHOW:(clearTimeout(n._timeout),n._hoverState=u.SHOW,n.config.delay&&n.config.delay.show?n._timeout=setTimeout(function(){n._hoverState===u.SHOW&&n.show()},n.config.delay.show):n.show())},m._leave=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusout"===t.type?g.FOCUS:g.HOVER]=!1),n._isWithActiveTrigger()||(clearTimeout(n._timeout),n._hoverState=u.OUT,n.config.delay&&n.config.delay.hide?n._timeout=setTimeout(function(){n._hoverState===u.OUT&&n.hide()},n.config.delay.hide):n.hide())},m._isWithActiveTrigger=function(){for(var t in 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-b=this._iDisplayStart,c=b+a,d=this.aiDisplay.length,e=this.oFeatures,f=e.bPaginate;return e.bServerSide?!1===f||-1===a?b+d:Math.min(b+a,this._iRecordsDisplay):!f||c>d||-1===a?d:c},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null,aLastSort:[],oPlugins:{},rowIdFn:null,rowId:null};m.ext=x={buttons:{},classes:{},build:"bs4/dt-1.10.16/b-1.4.2/b-colvis-1.4.2/b-html5-1.4.2/cr-1.4.1",errMode:"alert",feature:[],search:[],selector:{cell:[],column:[],row:[]},internal:{},legacy:{ajax:null},pager:{},renderer:{pageButton:{},header:{}},
-order:{},type:{detect:[],search:{},order:{}},_unique:0,fnVersionCheck:m.fnVersionCheck,iApiIndex:0,oJUIClasses:{},sVersion:m.version};h.extend(x,{afnFiltering:x.search,aTypes:x.type.detect,ofnSearch:x.type.search,oSort:x.type.order,afnSortData:x.order,aoFeatures:x.feature,oApi:x.internal,oStdClasses:x.classes,oPagination:x.pager});h.extend(m.ext.classes,{sTable:"dataTable",sNoFooter:"no-footer",sPageButton:"paginate_button",sPageButtonActive:"current",sPageButtonDisabled:"disabled",sStripeOdd:"odd",
-sStripeEven:"even",sRowEmpty:"dataTables_empty",sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sFilterInput:"",sLengthSelect:"",sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",
-sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sHeaderTH:"",sFooterTH:"",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",sJUIHeader:"",sJUIFooter:""});var Kb=m.ext.pager;h.extend(Kb,{simple:function(){return["previous","next"]},full:function(){return["first","previous","next","last"]},numbers:function(a,b){return[ha(a,
-b)]},simple_numbers:function(a,b){return["previous",ha(a,b),"next"]},full_numbers:function(a,b){return["first","previous",ha(a,b),"next","last"]},first_last_numbers:function(a,b){return["first",ha(a,b),"last"]},_numbers:ha,numbers_length:7});h.extend(!0,m.ext.renderer,{pageButton:{_:function(a,b,c,d,e,f){var g=a.oClasses,j=a.oLanguage.oPaginate,i=a.oLanguage.oAria.paginate||{},n,l,m=0,o=function(b,d){var k,s,u,r,v=function(b){Sa(a,b.data.action,true)};k=0;for(s=d.length;k<s;k++){r=d[k];if(h.isArray(r)){u=
-h("<"+(r.DT_el||"div")+"/>").appendTo(b);o(u,r)}else{n=null;l="";switch(r){case "ellipsis":b.append('<span class="ellipsis">&#x2026;</span>');break;case "first":n=j.sFirst;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "previous":n=j.sPrevious;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "next":n=j.sNext;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;case "last":n=j.sLast;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;default:n=r+1;l=e===r?g.sPageButtonActive:""}if(n!==null){u=h("<a>",{"class":g.sPageButton+
-" "+l,"aria-controls":a.sTableId,"aria-label":i[r],"data-dt-idx":m,tabindex:a.iTabIndex,id:c===0&&typeof r==="string"?a.sTableId+"_"+r:null}).html(n).appendTo(b);Va(u,{action:r},v);m++}}}},s;try{s=h(b).find(G.activeElement).data("dt-idx")}catch(u){}o(h(b).empty(),d);s!==k&&h(b).find("[data-dt-idx="+s+"]").focus()}}});h.extend(m.ext.type.detect,[function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c)?"num"+c:null},function(a){if(a&&!(a instanceof Date)&&!Zb.test(a))return null;var b=Date.parse(a);
-return null!==b&&!isNaN(b)||L(a)?"date":null},function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c,!0)?"num-fmt"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c)?"html-num"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c,!0)?"html-num-fmt"+c:null},function(a){return L(a)||"string"===typeof a&&-1!==a.indexOf("<")?"html":null}]);h.extend(m.ext.type.search,{html:function(a){return L(a)?a:"string"===typeof a?a.replace(Mb," ").replace(Aa,""):""},string:function(a){return L(a)?
-a:"string"===typeof a?a.replace(Mb," "):a}});var za=function(a,b,c,d){if(0!==a&&(!a||"-"===a))return-Infinity;b&&(a=Ob(a,b));a.replace&&(c&&(a=a.replace(c,"")),d&&(a=a.replace(d,"")));return 1*a};h.extend(x.type.order,{"date-pre":function(a){return Date.parse(a)||-Infinity},"html-pre":function(a){return L(a)?"":a.replace?a.replace(/<.*?>/g,"").toLowerCase():a+""},"string-pre":function(a){return L(a)?"":"string"===typeof a?a.toLowerCase():!a.toString?"":a.toString()},"string-asc":function(a,b){return a<
-b?-1:a>b?1:0},"string-desc":function(a,b){return a<b?1:a>b?-1:0}});cb("");h.extend(!0,m.ext.renderer,{header:{_:function(a,b,c,d){h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(c.sSortingClass+" "+d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass)}})},jqueryui:function(a,b,c,d){h("<div/>").addClass(d.sSortJUIWrapper).append(b.contents()).append(h("<span/>").addClass(d.sSortIcon+" "+c.sSortingClassJUI)).appendTo(b);
-h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass);b.find("span."+d.sSortIcon).removeClass(d.sSortJUIAsc+" "+d.sSortJUIDesc+" "+d.sSortJUI+" "+d.sSortJUIAscAllowed+" "+d.sSortJUIDescAllowed).addClass(h[e]=="asc"?d.sSortJUIAsc:h[e]=="desc"?d.sSortJUIDesc:c.sSortingClassJUI)}})}}});var Vb=function(a){return"string"===typeof a?a.replace(/</g,"&lt;").replace(/>/g,"&gt;").replace(/"/g,
-"&quot;"):a};m.render={number:function(a,b,c,d,e){return{display:function(f){if("number"!==typeof f&&"string"!==typeof f)return f;var g=0>f?"-":"",h=parseFloat(f);if(isNaN(h))return Vb(f);h=h.toFixed(c);f=Math.abs(h);h=parseInt(f,10);f=c?b+(f-h).toFixed(c).substring(2):"";return g+(d||"")+h.toString().replace(/\B(?=(\d{3})+(?!\d))/g,a)+f+(e||"")}}},text:function(){return{display:Vb}}};h.extend(m.ext.internal,{_fnExternApiFunc:Lb,_fnBuildAjax:sa,_fnAjaxUpdate:kb,_fnAjaxParameters:tb,_fnAjaxUpdateDraw:ub,
-_fnAjaxDataSrc:ta,_fnAddColumn:Da,_fnColumnOptions:ja,_fnAdjustColumnSizing:Y,_fnVisibleToColumnIndex:Z,_fnColumnIndexToVisible:$,_fnVisbleColumns:aa,_fnGetColumns:la,_fnColumnTypes:Fa,_fnApplyColumnDefs:hb,_fnHungarianMap:X,_fnCamelToHungarian:I,_fnLanguageCompat:Ca,_fnBrowserDetect:fb,_fnAddData:M,_fnAddTr:ma,_fnNodeToDataIndex:function(a,b){return b._DT_RowIndex!==k?b._DT_RowIndex:null},_fnNodeToColumnIndex:function(a,b,c){return h.inArray(c,a.aoData[b].anCells)},_fnGetCellData:B,_fnSetCellData:ib,
-_fnSplitObjNotation:Ia,_fnGetObjectDataFn:Q,_fnSetObjectDataFn:R,_fnGetDataMaster:Ja,_fnClearTable:na,_fnDeleteIndex:oa,_fnInvalidate:ca,_fnGetRowElements:Ha,_fnCreateTr:Ga,_fnBuildHead:jb,_fnDrawHead:ea,_fnDraw:N,_fnReDraw:S,_fnAddOptionsHtml:mb,_fnDetectHeader:da,_fnGetUniqueThs:ra,_fnFeatureHtmlFilter:ob,_fnFilterComplete:fa,_fnFilterCustom:xb,_fnFilterColumn:wb,_fnFilter:vb,_fnFilterCreateSearch:Oa,_fnEscapeRegex:Pa,_fnFilterData:yb,_fnFeatureHtmlInfo:rb,_fnUpdateInfo:Bb,_fnInfoMacros:Cb,_fnInitialise:ga,
-_fnInitComplete:ua,_fnLengthChange:Qa,_fnFeatureHtmlLength:nb,_fnFeatureHtmlPaginate:sb,_fnPageChange:Sa,_fnFeatureHtmlProcessing:pb,_fnProcessingDisplay:C,_fnFeatureHtmlTable:qb,_fnScrollDraw:ka,_fnApplyToChildren:H,_fnCalculateColumnWidths:Ea,_fnThrottle:Na,_fnConvertToWidth:Db,_fnGetWidestNode:Eb,_fnGetMaxLenString:Fb,_fnStringToCss:v,_fnSortFlatten:V,_fnSort:lb,_fnSortAria:Hb,_fnSortListener:Ua,_fnSortAttachListener:La,_fnSortingClasses:wa,_fnSortData:Gb,_fnSaveState:xa,_fnLoadState:Ib,_fnSettingsFromNode:ya,
-_fnLog:J,_fnMap:F,_fnBindAction:Va,_fnCallbackReg:z,_fnCallbackFire:r,_fnLengthOverflow:Ra,_fnRenderer:Ma,_fnDataSource:y,_fnRowAttributes:Ka,_fnCalculateEnd:function(){}});h.fn.dataTable=m;m.$=h;h.fn.dataTableSettings=m.settings;h.fn.dataTableExt=m.ext;h.fn.DataTable=function(a){return h(this).dataTable(a).api()};h.each(m,function(a,b){h.fn.DataTable[a]=b});return h.fn.dataTable});
-
-
-/*!
- DataTables Bootstrap 3 integration
- ©2011-2015 SpryMedia Ltd - datatables.net/license
-*/
-(function(b){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(a){return b(a,window,document)}):"object"===typeof exports?module.exports=function(a,d){a||(a=window);if(!d||!d.fn.dataTable)d=require("datatables.net")(a,d).$;return b(d,a,a.document)}:b(jQuery,window,document)})(function(b,a,d,m){var f=b.fn.dataTable;b.extend(!0,f.defaults,{dom:"<'row'<'col-sm-12 col-md-6'l><'col-sm-12 col-md-6'f>><'row'<'col-sm-12'tr>><'row'<'col-sm-12 col-md-5'i><'col-sm-12 col-md-7'p>>",
-renderer:"bootstrap"});b.extend(f.ext.classes,{sWrapper:"dataTables_wrapper container-fluid dt-bootstrap4",sFilterInput:"form-control form-control-sm",sLengthSelect:"form-control form-control-sm",sProcessing:"dataTables_processing card",sPageButton:"paginate_button page-item"});f.ext.renderer.pageButton.bootstrap=function(a,h,r,s,j,n){var o=new f.Api(a),t=a.oClasses,k=a.oLanguage.oPaginate,u=a.oLanguage.oAria.paginate||{},e,g,p=0,q=function(d,f){var l,h,i,c,m=function(a){a.preventDefault();!b(a.currentTarget).hasClass("disabled")&&
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-
-
-/*!
- Buttons for DataTables 1.4.2
- ©2016-2017 SpryMedia Ltd - datatables.net/license
-*/
-(function(d){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(n){return d(n,window,document)}):"object"===typeof exports?module.exports=function(n,o){n||(n=window);if(!o||!o.fn.dataTable)o=require("datatables.net")(n,o).$;return d(o,n,n.document)}:d(jQuery,window,document)})(function(d,n,o,l){var i=d.fn.dataTable,w=0,x=0,j=i.ext.buttons,m=function(a,b){"undefined"===typeof b&&(b={});!0===b&&(b={});d.isArray(b)&&(b={buttons:b});this.c=d.extend(!0,{},m.defaults,b);
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-b);return this},add:function(a,b){var c=this.s.buttons;if("string"===typeof b){for(var e=b.split("-"),c=this.s,d=0,h=e.length-1;d<h;d++)c=c.buttons[1*e[d]];c=c.buttons;b=1*e[e.length-1]}this._expandButton(c,a,!1,b);this._draw();return this},container:function(){return this.dom.container},disable:function(a){a=this._nodeToButton(a);d(a.node).addClass(this.c.dom.button.disabled);return this},destroy:function(){d("body").off("keyup."+this.s.namespace);var a=this.s.buttons.slice(),b,c;b=0;for(c=a.length;b<
-c;b++)this.remove(a[b].node);this.dom.container.remove();a=this.s.dt.settings()[0];b=0;for(c=a.length;b<c;b++)if(a.inst===this){a.splice(b,1);break}return this},enable:function(a,b){if(!1===b)return this.disable(a);var c=this._nodeToButton(a);d(c.node).removeClass(this.c.dom.button.disabled);return this},name:function(){return this.c.name},node:function(a){a=this._nodeToButton(a);return d(a.node)},processing:function(a,b){var c=this._nodeToButton(a);if(b===l)return d(c.node).hasClass("processing");
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xt=(c+(n=n+Math.imul(f,$)|0)|0)+((8191&(i=(i=i+Math.imul(f,tt)|0)+Math.imul(h,$)|0))<<13)|0;c=((a=a+Math.imul(h,tt)|0)+(i>>>13)|0)+(xt>>>26)|0,xt&=67108863,n=Math.imul(T,U),i=(i=Math.imul(T,V))+Math.imul(E,U)|0,a=Math.imul(E,V),n=n+Math.imul(M,H)|0,i=(i=i+Math.imul(M,G)|0)+Math.imul(k,H)|0,a=a+Math.imul(k,G)|0,n=n+Math.imul(x,W)|0,i=(i=i+Math.imul(x,X)|0)+Math.imul(_,W)|0,a=a+Math.imul(_,X)|0,n=n+Math.imul(g,J)|0,i=(i=i+Math.imul(g,K)|0)+Math.imul(y,J)|0,a=a+Math.imul(y,K)|0,n=n+Math.imul(p,$)|0,i=(i=i+Math.imul(p,tt)|0)+Math.imul(m,$)|0,a=a+Math.imul(m,tt)|0;var 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wt=(c+(n=n+Math.imul(f,at)|0)|0)+((8191&(i=(i=i+Math.imul(f,ot)|0)+Math.imul(h,at)|0))<<13)|0;c=((a=a+Math.imul(h,ot)|0)+(i>>>13)|0)+(wt>>>26)|0,wt&=67108863,n=Math.imul(z,U),i=(i=Math.imul(z,V))+Math.imul(O,U)|0,a=Math.imul(O,V),n=n+Math.imul(L,H)|0,i=(i=i+Math.imul(L,G)|0)+Math.imul(C,H)|0,a=a+Math.imul(C,G)|0,n=n+Math.imul(T,W)|0,i=(i=i+Math.imul(T,X)|0)+Math.imul(E,W)|0,a=a+Math.imul(E,X)|0,n=n+Math.imul(M,J)|0,i=(i=i+Math.imul(M,K)|0)+Math.imul(k,J)|0,a=a+Math.imul(k,K)|0,n=n+Math.imul(x,$)|0,i=(i=i+Math.imul(x,tt)|0)+Math.imul(_,$)|0,a=a+Math.imul(_,tt)|0,n=n+Math.imul(g,rt)|0,i=(i=i+Math.imul(g,nt)|0)+Math.imul(y,rt)|0,a=a+Math.imul(y,nt)|0,n=n+Math.imul(p,at)|0,i=(i=i+Math.imul(p,ot)|0)+Math.imul(m,at)|0,a=a+Math.imul(m,ot)|0;var 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kt=(c+(n=n+Math.imul(f,ft)|0)|0)+((8191&(i=(i=i+Math.imul(f,ht)|0)+Math.imul(h,ft)|0))<<13)|0;c=((a=a+Math.imul(h,ht)|0)+(i>>>13)|0)+(kt>>>26)|0,kt&=67108863,n=Math.imul(F,U),i=(i=Math.imul(F,V))+Math.imul(j,U)|0,a=Math.imul(j,V),n=n+Math.imul(I,H)|0,i=(i=i+Math.imul(I,G)|0)+Math.imul(R,H)|0,a=a+Math.imul(R,G)|0,n=n+Math.imul(z,W)|0,i=(i=i+Math.imul(z,X)|0)+Math.imul(O,W)|0,a=a+Math.imul(O,X)|0,n=n+Math.imul(L,J)|0,i=(i=i+Math.imul(L,K)|0)+Math.imul(C,J)|0,a=a+Math.imul(C,K)|0,n=n+Math.imul(T,$)|0,i=(i=i+Math.imul(T,tt)|0)+Math.imul(E,$)|0,a=a+Math.imul(E,tt)|0,n=n+Math.imul(M,rt)|0,i=(i=i+Math.imul(M,nt)|0)+Math.imul(k,rt)|0,a=a+Math.imul(k,nt)|0,n=n+Math.imul(x,at)|0,i=(i=i+Math.imul(x,ot)|0)+Math.imul(_,at)|0,a=a+Math.imul(_,ot)|0,n=n+Math.imul(g,lt)|0,i=(i=i+Math.imul(g,ct)|0)+Math.imul(y,lt)|0,a=a+Math.imul(y,ct)|0,n=n+Math.imul(p,ft)|0,i=(i=i+Math.imul(p,ht)|0)+Math.imul(m,ft)|0,a=a+Math.imul(m,ht)|0;var At=(c+(n=n+Math.imul(f,pt)|0)|0)+((8191&(i=(i=i+Math.imul(f,mt)|0)+Math.imul(h,pt)|0))<<13)|0;c=((a=a+Math.imul(h,mt)|0)+(i>>>13)|0)+(At>>>26)|0,At&=67108863,n=Math.imul(F,H),i=(i=Math.imul(F,G))+Math.imul(j,H)|0,a=Math.imul(j,G),n=n+Math.imul(I,W)|0,i=(i=i+Math.imul(I,X)|0)+Math.imul(R,W)|0,a=a+Math.imul(R,X)|0,n=n+Math.imul(z,J)|0,i=(i=i+Math.imul(z,K)|0)+Math.imul(O,J)|0,a=a+Math.imul(O,K)|0,n=n+Math.imul(L,$)|0,i=(i=i+Math.imul(L,tt)|0)+Math.imul(C,$)|0,a=a+Math.imul(C,tt)|0,n=n+Math.imul(T,rt)|0,i=(i=i+Math.imul(T,nt)|0)+Math.imul(E,rt)|0,a=a+Math.imul(E,nt)|0,n=n+Math.imul(M,at)|0,i=(i=i+Math.imul(M,ot)|0)+Math.imul(k,at)|0,a=a+Math.imul(k,ot)|0,n=n+Math.imul(x,lt)|0,i=(i=i+Math.imul(x,ct)|0)+Math.imul(_,lt)|0,a=a+Math.imul(_,ct)|0,n=n+Math.imul(g,ft)|0,i=(i=i+Math.imul(g,ht)|0)+Math.imul(y,ft)|0,a=a+Math.imul(y,ht)|0;var Tt=(c+(n=n+Math.imul(p,pt)|0)|0)+((8191&(i=(i=i+Math.imul(p,mt)|0)+Math.imul(m,pt)|0))<<13)|0;c=((a=a+Math.imul(m,mt)|0)+(i>>>13)|0)+(Tt>>>26)|0,Tt&=67108863,n=Math.imul(F,W),i=(i=Math.imul(F,X))+Math.imul(j,W)|0,a=Math.imul(j,X),n=n+Math.imul(I,J)|0,i=(i=i+Math.imul(I,K)|0)+Math.imul(R,J)|0,a=a+Math.imul(R,K)|0,n=n+Math.imul(z,$)|0,i=(i=i+Math.imul(z,tt)|0)+Math.imul(O,$)|0,a=a+Math.imul(O,tt)|0,n=n+Math.imul(L,rt)|0,i=(i=i+Math.imul(L,nt)|0)+Math.imul(C,rt)|0,a=a+Math.imul(C,nt)|0,n=n+Math.imul(T,at)|0,i=(i=i+Math.imul(T,ot)|0)+Math.imul(E,at)|0,a=a+Math.imul(E,ot)|0,n=n+Math.imul(M,lt)|0,i=(i=i+Math.imul(M,ct)|0)+Math.imul(k,lt)|0,a=a+Math.imul(k,ct)|0,n=n+Math.imul(x,ft)|0,i=(i=i+Math.imul(x,ht)|0)+Math.imul(_,ft)|0,a=a+Math.imul(_,ht)|0;var Et=(c+(n=n+Math.imul(g,pt)|0)|0)+((8191&(i=(i=i+Math.imul(g,mt)|0)+Math.imul(y,pt)|0))<<13)|0;c=((a=a+Math.imul(y,mt)|0)+(i>>>13)|0)+(Et>>>26)|0,Et&=67108863,n=Math.imul(F,J),i=(i=Math.imul(F,K))+Math.imul(j,J)|0,a=Math.imul(j,K),n=n+Math.imul(I,$)|0,i=(i=i+Math.imul(I,tt)|0)+Math.imul(R,$)|0,a=a+Math.imul(R,tt)|0,n=n+Math.imul(z,rt)|0,i=(i=i+Math.imul(z,nt)|0)+Math.imul(O,rt)|0,a=a+Math.imul(O,nt)|0,n=n+Math.imul(L,at)|0,i=(i=i+Math.imul(L,ot)|0)+Math.imul(C,at)|0,a=a+Math.imul(C,ot)|0,n=n+Math.imul(T,lt)|0,i=(i=i+Math.imul(T,ct)|0)+Math.imul(E,lt)|0,a=a+Math.imul(E,ct)|0,n=n+Math.imul(M,ft)|0,i=(i=i+Math.imul(M,ht)|0)+Math.imul(k,ft)|0,a=a+Math.imul(k,ht)|0;var St=(c+(n=n+Math.imul(x,pt)|0)|0)+((8191&(i=(i=i+Math.imul(x,mt)|0)+Math.imul(_,pt)|0))<<13)|0;c=((a=a+Math.imul(_,mt)|0)+(i>>>13)|0)+(St>>>26)|0,St&=67108863,n=Math.imul(F,$),i=(i=Math.imul(F,tt))+Math.imul(j,$)|0,a=Math.imul(j,tt),n=n+Math.imul(I,rt)|0,i=(i=i+Math.imul(I,nt)|0)+Math.imul(R,rt)|0,a=a+Math.imul(R,nt)|0,n=n+Math.imul(z,at)|0,i=(i=i+Math.imul(z,ot)|0)+Math.imul(O,at)|0,a=a+Math.imul(O,ot)|0,n=n+Math.imul(L,lt)|0,i=(i=i+Math.imul(L,ct)|0)+Math.imul(C,lt)|0,a=a+Math.imul(C,ct)|0,n=n+Math.imul(T,ft)|0,i=(i=i+Math.imul(T,ht)|0)+Math.imul(E,ft)|0,a=a+Math.imul(E,ht)|0;var Lt=(c+(n=n+Math.imul(M,pt)|0)|0)+((8191&(i=(i=i+Math.imul(M,mt)|0)+Math.imul(k,pt)|0))<<13)|0;c=((a=a+Math.imul(k,mt)|0)+(i>>>13)|0)+(Lt>>>26)|0,Lt&=67108863,n=Math.imul(F,rt),i=(i=Math.imul(F,nt))+Math.imul(j,rt)|0,a=Math.imul(j,nt),n=n+Math.imul(I,at)|0,i=(i=i+Math.imul(I,ot)|0)+Math.imul(R,at)|0,a=a+Math.imul(R,ot)|0,n=n+Math.imul(z,lt)|0,i=(i=i+Math.imul(z,ct)|0)+Math.imul(O,lt)|0,a=a+Math.imul(O,ct)|0,n=n+Math.imul(L,ft)|0,i=(i=i+Math.imul(L,ht)|0)+Math.imul(C,ft)|0,a=a+Math.imul(C,ht)|0;var Ct=(c+(n=n+Math.imul(T,pt)|0)|0)+((8191&(i=(i=i+Math.imul(T,mt)|0)+Math.imul(E,pt)|0))<<13)|0;c=((a=a+Math.imul(E,mt)|0)+(i>>>13)|0)+(Ct>>>26)|0,Ct&=67108863,n=Math.imul(F,at),i=(i=Math.imul(F,ot))+Math.imul(j,at)|0,a=Math.imul(j,ot),n=n+Math.imul(I,lt)|0,i=(i=i+Math.imul(I,ct)|0)+Math.imul(R,lt)|0,a=a+Math.imul(R,ct)|0,n=n+Math.imul(z,ft)|0,i=(i=i+Math.imul(z,ht)|0)+Math.imul(O,ft)|0,a=a+Math.imul(O,ht)|0;var Pt=(c+(n=n+Math.imul(L,pt)|0)|0)+((8191&(i=(i=i+Math.imul(L,mt)|0)+Math.imul(C,pt)|0))<<13)|0;c=((a=a+Math.imul(C,mt)|0)+(i>>>13)|0)+(Pt>>>26)|0,Pt&=67108863,n=Math.imul(F,lt),i=(i=Math.imul(F,ct))+Math.imul(j,lt)|0,a=Math.imul(j,ct),n=n+Math.imul(I,ft)|0,i=(i=i+Math.imul(I,ht)|0)+Math.imul(R,ft)|0,a=a+Math.imul(R,ht)|0;var zt=(c+(n=n+Math.imul(z,pt)|0)|0)+((8191&(i=(i=i+Math.imul(z,mt)|0)+Math.imul(O,pt)|0))<<13)|0;c=((a=a+Math.imul(O,mt)|0)+(i>>>13)|0)+(zt>>>26)|0,zt&=67108863,n=Math.imul(F,ft),i=(i=Math.imul(F,ht))+Math.imul(j,ft)|0,a=Math.imul(j,ht);var Ot=(c+(n=n+Math.imul(I,pt)|0)|0)+((8191&(i=(i=i+Math.imul(I,mt)|0)+Math.imul(R,pt)|0))<<13)|0;c=((a=a+Math.imul(R,mt)|0)+(i>>>13)|0)+(Ot>>>26)|0,Ot&=67108863;var Dt=(c+(n=Math.imul(F,pt))|0)+((8191&(i=(i=Math.imul(F,mt))+Math.imul(j,pt)|0))<<13)|0;return c=((a=Math.imul(j,mt))+(i>>>13)|0)+(Dt>>>26)|0,Dt&=67108863,l[0]=vt,l[1]=gt,l[2]=yt,l[3]=bt,l[4]=xt,l[5]=_t,l[6]=wt,l[7]=Mt,l[8]=kt,l[9]=At,l[10]=Tt,l[11]=Et,l[12]=St,l[13]=Lt,l[14]=Ct,l[15]=Pt,l[16]=zt,l[17]=Ot,l[18]=Dt,0!==c&&(l[19]=c,r.length++),r};function p(t,e,r){return(new m).mulp(t,e,r)}function m(t,e){this.x=t,this.y=e}Math.imul||(d=h),a.prototype.mulTo=function(t,e){var r=this.length+t.length;return 10===this.length&&10===t.length?d(this,t,e):r<63?h(this,t,e):r<1024?function(t,e,r){r.negative=e.negative^t.negative,r.length=t.length+e.length;for(var n=0,i=0,a=0;a<r.length-1;a++){var o=i;i=0;for(var s=67108863&n,l=Math.min(a,e.length-1),c=Math.max(0,a-t.length+1);c<=l;c++){var u=a-c,f=(0|t.words[u])*(0|e.words[c]),h=67108863&f;s=67108863&(h=h+s|0),i+=(o=(o=o+(f/67108864|0)|0)+(h>>>26)|0)>>>26,o&=67108863}r.words[a]=s,n=o,o=i}return 0!==n?r.words[a]=n:r.length--,r.strip()}(this,t,e):p(this,t,e)},m.prototype.makeRBT=function(t){for(var e=new Array(t),r=a.prototype._countBits(t)-1,n=0;n<t;n++)e[n]=this.revBin(n,r,t);return e},m.prototype.revBin=function(t,e,r){if(0===t||t===r-1)return t;for(var n=0,i=0;i<e;i++)n|=(1&t)<<e-i-1,t>>=1;return n},m.prototype.permute=function(t,e,r,n,i,a){for(var o=0;o<a;o++)n[o]=e[t[o]],i[o]=r[t[o]]},m.prototype.transform=function(t,e,r,n,i,a){this.permute(a,t,e,r,n,i);for(var o=1;o<i;o<<=1)for(var s=o<<1,l=Math.cos(2*Math.PI/s),c=Math.sin(2*Math.PI/s),u=0;u<i;u+=s)for(var f=l,h=c,d=0;d<o;d++){var p=r[u+d],m=n[u+d],v=r[u+d+o],g=n[u+d+o],y=f*v-h*g;g=f*g+h*v,v=y,r[u+d]=p+v,n[u+d]=m+g,r[u+d+o]=p-v,n[u+d+o]=m-g,d!==s&&(y=l*f-c*h,h=l*h+c*f,f=y)}},m.prototype.guessLen13b=function(t,e){var r=1|Math.max(e,t),n=1&r,i=0;for(r=r/2|0;r;r>>>=1)i++;return 1<<i+1+n},m.prototype.conjugate=function(t,e,r){if(!(r<=1))for(var n=0;n<r/2;n++){var i=t[n];t[n]=t[r-n-1],t[r-n-1]=i,i=e[n],e[n]=-e[r-n-1],e[r-n-1]=-i}},m.prototype.normalize13b=function(t,e){for(var r=0,n=0;n<e/2;n++){var i=8192*Math.round(t[2*n+1]/e)+Math.round(t[2*n]/e)+r;t[n]=67108863&i,r=i<67108864?0:i/67108864|0}return t},m.prototype.convert13b=function(t,e,r,i){for(var a=0,o=0;o<e;o++)a+=0|t[o],r[2*o]=8191&a,a>>>=13,r[2*o+1]=8191&a,a>>>=13;for(o=2*e;o<i;++o)r[o]=0;n(0===a),n(0==(-8192&a))},m.prototype.stub=function(t){for(var e=new Array(t),r=0;r<t;r++)e[r]=0;return e},m.prototype.mulp=function(t,e,r){var n=2*this.guessLen13b(t.length,e.length),i=this.makeRBT(n),a=this.stub(n),o=new Array(n),s=new Array(n),l=new Array(n),c=new Array(n),u=new Array(n),f=new Array(n),h=r.words;h.length=n,this.convert13b(t.words,t.length,o,n),this.convert13b(e.words,e.length,c,n),this.transform(o,a,s,l,n,i),this.transform(c,a,u,f,n,i);for(var d=0;d<n;d++){var p=s[d]*u[d]-l[d]*f[d];l[d]=s[d]*f[d]+l[d]*u[d],s[d]=p}return this.conjugate(s,l,n),this.transform(s,l,h,a,n,i),this.conjugate(h,a,n),this.normalize13b(h,n),r.negative=t.negative^e.negative,r.length=t.length+e.length,r.strip()},a.prototype.mul=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),this.mulTo(t,e)},a.prototype.mulf=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),p(this,t,e)},a.prototype.imul=function(t){return this.clone().mulTo(t,this)},a.prototype.imuln=function(t){n("number"==typeof t),n(t<67108864);for(var e=0,r=0;r<this.length;r++){var i=(0|this.words[r])*t,a=(67108863&i)+(67108863&e);e>>=26,e+=i/67108864|0,e+=a>>>26,this.words[r]=67108863&a}return 0!==e&&(this.words[r]=e,this.length++),this},a.prototype.muln=function(t){return this.clone().imuln(t)},a.prototype.sqr=function(){return this.mul(this)},a.prototype.isqr=function(){return this.imul(this.clone())},a.prototype.pow=function(t){var e=function(t){for(var e=new Array(t.bitLength()),r=0;r<e.length;r++){var n=r/26|0,i=r%26;e[r]=(t.words[n]&1<<i)>>>i}return e}(t);if(0===e.length)return new a(1);for(var r=this,n=0;n<e.length&&0===e[n];n++,r=r.sqr());if(++n<e.length)for(var i=r.sqr();n<e.length;n++,i=i.sqr())0!==e[n]&&(r=r.mul(i));return r},a.prototype.iushln=function(t){n("number"==typeof t&&t>=0);var e,r=t%26,i=(t-r)/26,a=67108863>>>26-r<<26-r;if(0!==r){var o=0;for(e=0;e<this.length;e++){var s=this.words[e]&a,l=(0|this.words[e])-s<<r;this.words[e]=l|o,o=s>>>26-r}o&&(this.words[e]=o,this.length++)}if(0!==i){for(e=this.length-1;e>=0;e--)this.words[e+i]=this.words[e];for(e=0;e<i;e++)this.words[e]=0;this.length+=i}return this.strip()},a.prototype.ishln=function(t){return n(0===this.negative),this.iushln(t)},a.prototype.iushrn=function(t,e,r){var i;n("number"==typeof t&&t>=0),i=e?(e-e%26)/26:0;var a=t%26,o=Math.min((t-a)/26,this.length),s=67108863^67108863>>>a<<a,l=r;if(i-=o,i=Math.max(0,i),l){for(var c=0;c<o;c++)l.words[c]=this.words[c];l.length=o}if(0===o);else if(this.length>o)for(this.length-=o,c=0;c<this.length;c++)this.words[c]=this.words[c+o];else this.words[0]=0,this.length=1;var u=0;for(c=this.length-1;c>=0&&(0!==u||c>=i);c--){var f=0|this.words[c];this.words[c]=u<<26-a|f>>>a,u=f&s}return l&&0!==u&&(l.words[l.length++]=u),0===this.length&&(this.words[0]=0,this.length=1),this.strip()},a.prototype.ishrn=function(t,e,r){return n(0===this.negative),this.iushrn(t,e,r)},a.prototype.shln=function(t){return this.clone().ishln(t)},a.prototype.ushln=function(t){return this.clone().iushln(t)},a.prototype.shrn=function(t){return this.clone().ishrn(t)},a.prototype.ushrn=function(t){return this.clone().iushrn(t)},a.prototype.testn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26,i=1<<e;return!(this.length<=r)&&!!(this.words[r]&i)},a.prototype.imaskn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26;if(n(0===this.negative,"imaskn works only with positive numbers"),this.length<=r)return this;if(0!==e&&r++,this.length=Math.min(r,this.length),0!==e){var i=67108863^67108863>>>e<<e;this.words[this.length-1]&=i}return this.strip()},a.prototype.maskn=function(t){return this.clone().imaskn(t)},a.prototype.iaddn=function(t){return n("number"==typeof t),n(t<67108864),t<0?this.isubn(-t):0!==this.negative?1===this.length&&(0|this.words[0])<t?(this.words[0]=t-(0|this.words[0]),this.negative=0,this):(this.negative=0,this.isubn(t),this.negative=1,this):this._iaddn(t)},a.prototype._iaddn=function(t){this.words[0]+=t;for(var e=0;e<this.length&&this.words[e]>=67108864;e++)this.words[e]-=67108864,e===this.length-1?this.words[e+1]=1:this.words[e+1]++;return this.length=Math.max(this.length,e+1),this},a.prototype.isubn=function(t){if(n("number"==typeof t),n(t<67108864),t<0)return this.iaddn(-t);if(0!==this.negative)return this.negative=0,this.iaddn(t),this.negative=1,this;if(this.words[0]-=t,1===this.length&&this.words[0]<0)this.words[0]=-this.words[0],this.negative=1;else for(var e=0;e<this.length&&this.words[e]<0;e++)this.words[e]+=67108864,this.words[e+1]-=1;return this.strip()},a.prototype.addn=function(t){return this.clone().iaddn(t)},a.prototype.subn=function(t){return this.clone().isubn(t)},a.prototype.iabs=function(){return this.negative=0,this},a.prototype.abs=function(){return this.clone().iabs()},a.prototype._ishlnsubmul=function(t,e,r){var i,a,o=t.length+r;this._expand(o);var s=0;for(i=0;i<t.length;i++){a=(0|this.words[i+r])+s;var l=(0|t.words[i])*e;s=((a-=67108863&l)>>26)-(l/67108864|0),this.words[i+r]=67108863&a}for(;i<this.length-r;i++)s=(a=(0|this.words[i+r])+s)>>26,this.words[i+r]=67108863&a;if(0===s)return this.strip();for(n(-1===s),s=0,i=0;i<this.length;i++)s=(a=-(0|this.words[i])+s)>>26,this.words[i]=67108863&a;return this.negative=1,this.strip()},a.prototype._wordDiv=function(t,e){var r=(this.length,t.length),n=this.clone(),i=t,o=0|i.words[i.length-1];0!==(r=26-this._countBits(o))&&(i=i.ushln(r),n.iushln(r),o=0|i.words[i.length-1]);var s,l=n.length-i.length;if("mod"!==e){(s=new a(null)).length=l+1,s.words=new Array(s.length);for(var c=0;c<s.length;c++)s.words[c]=0}var u=n.clone()._ishlnsubmul(i,1,l);0===u.negative&&(n=u,s&&(s.words[l]=1));for(var f=l-1;f>=0;f--){var h=67108864*(0|n.words[i.length+f])+(0|n.words[i.length+f-1]);for(h=Math.min(h/o|0,67108863),n._ishlnsubmul(i,h,f);0!==n.negative;)h--,n.negative=0,n._ishlnsubmul(i,1,f),n.isZero()||(n.negative^=1);s&&(s.words[f]=h)}return s&&s.strip(),n.strip(),"div"!==e&&0!==r&&n.iushrn(r),{div:s||null,mod:n}},a.prototype.divmod=function(t,e,r){return n(!t.isZero()),this.isZero()?{div:new a(0),mod:new a(0)}:0!==this.negative&&0===t.negative?(s=this.neg().divmod(t,e),"mod"!==e&&(i=s.div.neg()),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.iadd(t)),{div:i,mod:o}):0===this.negative&&0!==t.negative?(s=this.divmod(t.neg(),e),"mod"!==e&&(i=s.div.neg()),{div:i,mod:s.mod}):0!=(this.negative&t.negative)?(s=this.neg().divmod(t.neg(),e),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.isub(t)),{div:s.div,mod:o}):t.length>this.length||this.cmp(t)<0?{div:new a(0),mod:this}:1===t.length?"div"===e?{div:this.divn(t.words[0]),mod:null}:"mod"===e?{div:null,mod:new a(this.modn(t.words[0]))}:{div:this.divn(t.words[0]),mod:new a(this.modn(t.words[0]))}:this._wordDiv(t,e);var i,o,s},a.prototype.div=function(t){return this.divmod(t,"div",!1).div},a.prototype.mod=function(t){return this.divmod(t,"mod",!1).mod},a.prototype.umod=function(t){return this.divmod(t,"mod",!0).mod},a.prototype.divRound=function(t){var e=this.divmod(t);if(e.mod.isZero())return e.div;var r=0!==e.div.negative?e.mod.isub(t):e.mod,n=t.ushrn(1),i=t.andln(1),a=r.cmp(n);return a<0||1===i&&0===a?e.div:0!==e.div.negative?e.div.isubn(1):e.div.iaddn(1)},a.prototype.modn=function(t){n(t<=67108863);for(var e=(1<<26)%t,r=0,i=this.length-1;i>=0;i--)r=(e*r+(0|this.words[i]))%t;return r},a.prototype.idivn=function(t){n(t<=67108863);for(var e=0,r=this.length-1;r>=0;r--){var i=(0|this.words[r])+67108864*e;this.words[r]=i/t|0,e=i%t}return this.strip()},a.prototype.divn=function(t){return this.clone().idivn(t)},a.prototype.egcd=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i=new a(1),o=new a(0),s=new a(0),l=new a(1),c=0;e.isEven()&&r.isEven();)e.iushrn(1),r.iushrn(1),++c;for(var u=r.clone(),f=e.clone();!e.isZero();){for(var h=0,d=1;0==(e.words[0]&d)&&h<26;++h,d<<=1);if(h>0)for(e.iushrn(h);h-- >0;)(i.isOdd()||o.isOdd())&&(i.iadd(u),o.isub(f)),i.iushrn(1),o.iushrn(1);for(var p=0,m=1;0==(r.words[0]&m)&&p<26;++p,m<<=1);if(p>0)for(r.iushrn(p);p-- >0;)(s.isOdd()||l.isOdd())&&(s.iadd(u),l.isub(f)),s.iushrn(1),l.iushrn(1);e.cmp(r)>=0?(e.isub(r),i.isub(s),o.isub(l)):(r.isub(e),s.isub(i),l.isub(o))}return{a:s,b:l,gcd:r.iushln(c)}},a.prototype._invmp=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i,o=new a(1),s=new a(0),l=r.clone();e.cmpn(1)>0&&r.cmpn(1)>0;){for(var c=0,u=1;0==(e.words[0]&u)&&c<26;++c,u<<=1);if(c>0)for(e.iushrn(c);c-- >0;)o.isOdd()&&o.iadd(l),o.iushrn(1);for(var f=0,h=1;0==(r.words[0]&h)&&f<26;++f,h<<=1);if(f>0)for(r.iushrn(f);f-- >0;)s.isOdd()&&s.iadd(l),s.iushrn(1);e.cmp(r)>=0?(e.isub(r),o.isub(s)):(r.isub(e),s.isub(o))}return(i=0===e.cmpn(1)?o:s).cmpn(0)<0&&i.iadd(t),i},a.prototype.gcd=function(t){if(this.isZero())return t.abs();if(t.isZero())return this.abs();var e=this.clone(),r=t.clone();e.negative=0,r.negative=0;for(var n=0;e.isEven()&&r.isEven();n++)e.iushrn(1),r.iushrn(1);for(;;){for(;e.isEven();)e.iushrn(1);for(;r.isEven();)r.iushrn(1);var i=e.cmp(r);if(i<0){var a=e;e=r,r=a}else if(0===i||0===r.cmpn(1))break;e.isub(r)}return r.iushln(n)},a.prototype.invm=function(t){return this.egcd(t).a.umod(t)},a.prototype.isEven=function(){return 0==(1&this.words[0])},a.prototype.isOdd=function(){return 1==(1&this.words[0])},a.prototype.andln=function(t){return this.words[0]&t},a.prototype.bincn=function(t){n("number"==typeof t);var e=t%26,r=(t-e)/26,i=1<<e;if(this.length<=r)return this._expand(r+1),this.words[r]|=i,this;for(var a=i,o=r;0!==a&&o<this.length;o++){var s=0|this.words[o];a=(s+=a)>>>26,s&=67108863,this.words[o]=s}return 0!==a&&(this.words[o]=a,this.length++),this},a.prototype.isZero=function(){return 1===this.length&&0===this.words[0]},a.prototype.cmpn=function(t){var e,r=t<0;if(0!==this.negative&&!r)return-1;if(0===this.negative&&r)return 1;if(this.strip(),this.length>1)e=1;else{r&&(t=-t),n(t<=67108863,"Number is too big");var i=0|this.words[0];e=i===t?0:i<t?-1:1}return 0!==this.negative?0|-e:e},a.prototype.cmp=function(t){if(0!==this.negative&&0===t.negative)return-1;if(0===this.negative&&0!==t.negative)return 1;var e=this.ucmp(t);return 0!==this.negative?0|-e:e},a.prototype.ucmp=function(t){if(this.length>t.length)return 1;if(this.length<t.length)return-1;for(var e=0,r=this.length-1;r>=0;r--){var n=0|this.words[r],i=0|t.words[r];if(n!==i){n<i?e=-1:n>i&&(e=1);break}}return e},a.prototype.gtn=function(t){return 1===this.cmpn(t)},a.prototype.gt=function(t){return 1===this.cmp(t)},a.prototype.gten=function(t){return this.cmpn(t)>=0},a.prototype.gte=function(t){return this.cmp(t)>=0},a.prototype.ltn=function(t){return-1===this.cmpn(t)},a.prototype.lt=function(t){return-1===this.cmp(t)},a.prototype.lten=function(t){return this.cmpn(t)<=0},a.prototype.lte=function(t){return this.cmp(t)<=0},a.prototype.eqn=function(t){return 0===this.cmpn(t)},a.prototype.eq=function(t){return 0===this.cmp(t)},a.red=function(t){return new w(t)},a.prototype.toRed=function(t){return n(!this.red,"Already a number in reduction context"),n(0===this.negative,"red works only with positives"),t.convertTo(this)._forceRed(t)},a.prototype.fromRed=function(){return n(this.red,"fromRed works only with numbers in reduction context"),this.red.convertFrom(this)},a.prototype._forceRed=function(t){return this.red=t,this},a.prototype.forceRed=function(t){return n(!this.red,"Already a number in reduction context"),this._forceRed(t)},a.prototype.redAdd=function(t){return n(this.red,"redAdd works only with red numbers"),this.red.add(this,t)},a.prototype.redIAdd=function(t){return n(this.red,"redIAdd works only with red numbers"),this.red.iadd(this,t)},a.prototype.redSub=function(t){return n(this.red,"redSub works only with red numbers"),this.red.sub(this,t)},a.prototype.redISub=function(t){return n(this.red,"redISub works only with red numbers"),this.red.isub(this,t)},a.prototype.redShl=function(t){return n(this.red,"redShl works only with red numbers"),this.red.shl(this,t)},a.prototype.redMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.mul(this,t)},a.prototype.redIMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.imul(this,t)},a.prototype.redSqr=function(){return n(this.red,"redSqr works only with red numbers"),this.red._verify1(this),this.red.sqr(this)},a.prototype.redISqr=function(){return n(this.red,"redISqr works only with red numbers"),this.red._verify1(this),this.red.isqr(this)},a.prototype.redSqrt=function(){return n(this.red,"redSqrt works only with red numbers"),this.red._verify1(this),this.red.sqrt(this)},a.prototype.redInvm=function(){return n(this.red,"redInvm works only with red numbers"),this.red._verify1(this),this.red.invm(this)},a.prototype.redNeg=function(){return n(this.red,"redNeg works only with red numbers"),this.red._verify1(this),this.red.neg(this)},a.prototype.redPow=function(t){return n(this.red&&!t.red,"redPow(normalNum)"),this.red._verify1(this),this.red.pow(this,t)};var v={k256:null,p224:null,p192:null,p25519:null};function g(t,e){this.name=t,this.p=new a(e,16),this.n=this.p.bitLength(),this.k=new a(1).iushln(this.n).isub(this.p),this.tmp=this._tmp()}function y(){g.call(this,"k256","ffffffff ffffffff ffffffff ffffffff ffffffff ffffffff fffffffe fffffc2f")}function b(){g.call(this,"p224","ffffffff ffffffff ffffffff ffffffff 00000000 00000000 00000001")}function x(){g.call(this,"p192","ffffffff ffffffff ffffffff fffffffe ffffffff ffffffff")}function _(){g.call(this,"25519","7fffffffffffffff ffffffffffffffff ffffffffffffffff ffffffffffffffed")}function w(t){if("string"==typeof t){var e=a._prime(t);this.m=e.p,this.prime=e}else n(t.gtn(1),"modulus must be greater than 1"),this.m=t,this.prime=null}function M(t){w.call(this,t),this.shift=this.m.bitLength(),this.shift%26!=0&&(this.shift+=26-this.shift%26),this.r=new a(1).iushln(this.shift),this.r2=this.imod(this.r.sqr()),this.rinv=this.r._invmp(this.m),this.minv=this.rinv.mul(this.r).isubn(1).div(this.m),this.minv=this.minv.umod(this.r),this.minv=this.r.sub(this.minv)}g.prototype._tmp=function(){var t=new a(null);return t.words=new Array(Math.ceil(this.n/13)),t},g.prototype.ireduce=function(t){var e,r=t;do{this.split(r,this.tmp),e=(r=(r=this.imulK(r)).iadd(this.tmp)).bitLength()}while(e>this.n);var n=e<this.n?-1:r.ucmp(this.p);return 0===n?(r.words[0]=0,r.length=1):n>0?r.isub(this.p):r.strip(),r},g.prototype.split=function(t,e){t.iushrn(this.n,0,e)},g.prototype.imulK=function(t){return t.imul(this.k)},i(y,g),y.prototype.split=function(t,e){for(var r=Math.min(t.length,9),n=0;n<r;n++)e.words[n]=t.words[n];if(e.length=r,t.length<=9)return t.words[0]=0,void(t.length=1);var i=t.words[9];for(e.words[e.length++]=4194303&i,n=10;n<t.length;n++){var a=0|t.words[n];t.words[n-10]=(4194303&a)<<4|i>>>22,i=a}i>>>=22,t.words[n-10]=i,0===i&&t.length>10?t.length-=10:t.length-=9},y.prototype.imulK=function(t){t.words[t.length]=0,t.words[t.length+1]=0,t.length+=2;for(var e=0,r=0;r<t.length;r++){var n=0|t.words[r];e+=977*n,t.words[r]=67108863&e,e=64*n+(e/67108864|0)}return 0===t.words[t.length-1]&&(t.length--,0===t.words[t.length-1]&&t.length--),t},i(b,g),i(x,g),i(_,g),_.prototype.imulK=function(t){for(var e=0,r=0;r<t.length;r++){var n=19*(0|t.words[r])+e,i=67108863&n;n>>>=26,t.words[r]=i,e=n}return 0!==e&&(t.words[t.length++]=e),t},a._prime=function(t){if(v[t])return v[t];var e;if("k256"===t)e=new y;else if("p224"===t)e=new b;else if("p192"===t)e=new x;else{if("p25519"!==t)throw new Error("Unknown prime "+t);e=new _}return v[t]=e,e},w.prototype._verify1=function(t){n(0===t.negative,"red works only with positives"),n(t.red,"red works only with red numbers")},w.prototype._verify2=function(t,e){n(0==(t.negative|e.negative),"red works only with positives"),n(t.red&&t.red===e.red,"red works only with red numbers")},w.prototype.imod=function(t){return this.prime?this.prime.ireduce(t)._forceRed(this):t.umod(this.m)._forceRed(this)},w.prototype.neg=function(t){return t.isZero()?t.clone():this.m.sub(t)._forceRed(this)},w.prototype.add=function(t,e){this._verify2(t,e);var r=t.add(e);return r.cmp(this.m)>=0&&r.isub(this.m),r._forceRed(this)},w.prototype.iadd=function(t,e){this._verify2(t,e);var r=t.iadd(e);return r.cmp(this.m)>=0&&r.isub(this.m),r},w.prototype.sub=function(t,e){this._verify2(t,e);var r=t.sub(e);return r.cmpn(0)<0&&r.iadd(this.m),r._forceRed(this)},w.prototype.isub=function(t,e){this._verify2(t,e);var r=t.isub(e);return r.cmpn(0)<0&&r.iadd(this.m),r},w.prototype.shl=function(t,e){return this._verify1(t),this.imod(t.ushln(e))},w.prototype.imul=function(t,e){return this._verify2(t,e),this.imod(t.imul(e))},w.prototype.mul=function(t,e){return this._verify2(t,e),this.imod(t.mul(e))},w.prototype.isqr=function(t){return this.imul(t,t.clone())},w.prototype.sqr=function(t){return this.mul(t,t)},w.prototype.sqrt=function(t){if(t.isZero())return t.clone();var e=this.m.andln(3);if(n(e%2==1),3===e){var r=this.m.add(new a(1)).iushrn(2);return this.pow(t,r)}for(var i=this.m.subn(1),o=0;!i.isZero()&&0===i.andln(1);)o++,i.iushrn(1);n(!i.isZero());var s=new a(1).toRed(this),l=s.redNeg(),c=this.m.subn(1).iushrn(1),u=this.m.bitLength();for(u=new a(2*u*u).toRed(this);0!==this.pow(u,c).cmp(l);)u.redIAdd(l);for(var f=this.pow(u,i),h=this.pow(t,i.addn(1).iushrn(1)),d=this.pow(t,i),p=o;0!==d.cmp(s);){for(var m=d,v=0;0!==m.cmp(s);v++)m=m.redSqr();n(v<p);var g=this.pow(f,new a(1).iushln(p-v-1));h=h.redMul(g),f=g.redSqr(),d=d.redMul(f),p=v}return h},w.prototype.invm=function(t){var e=t._invmp(this.m);return 0!==e.negative?(e.negative=0,this.imod(e).redNeg()):this.imod(e)},w.prototype.pow=function(t,e){if(e.isZero())return new a(1).toRed(this);if(0===e.cmpn(1))return t.clone();var r=new Array(16);r[0]=new a(1).toRed(this),r[1]=t;for(var n=2;n<r.length;n++)r[n]=this.mul(r[n-1],t);var i=r[0],o=0,s=0,l=e.bitLength()%26;for(0===l&&(l=26),n=e.length-1;n>=0;n--){for(var c=e.words[n],u=l-1;u>=0;u--){var f=c>>u&1;i!==r[0]&&(i=this.sqr(i)),0!==f||0!==o?(o<<=1,o|=f,(4===++s||0===n&&0===u)&&(i=this.mul(i,r[o]),s=0,o=0)):s=0}l=26}return i},w.prototype.convertTo=function(t){var e=t.umod(this.m);return e===t?e.clone():e},w.prototype.convertFrom=function(t){var e=t.clone();return e.red=null,e},a.mont=function(t){return new M(t)},i(M,w),M.prototype.convertTo=function(t){return this.imod(t.ushln(this.shift))},M.prototype.convertFrom=function(t){var e=this.imod(t.mul(this.rinv));return e.red=null,e},M.prototype.imul=function(t,e){if(t.isZero()||e.isZero())return t.words[0]=0,t.length=1,t;var r=t.imul(e),n=r.maskn(this.shift).mul(this.minv).imaskn(this.shift).mul(this.m),i=r.isub(n).iushrn(this.shift),a=i;return i.cmp(this.m)>=0?a=i.isub(this.m):i.cmpn(0)<0&&(a=i.iadd(this.m)),a._forceRed(this)},M.prototype.mul=function(t,e){if(t.isZero()||e.isZero())return new a(0)._forceRed(this);var 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f=r-1;f>=0;--f)n.push(a(l[f],c[f],n[o]+u*i[o])),i.push(0),o+=1}}},{"binary-search-bounds":70,"cubic-hermite":115}],143:[function(t,e,r){var n=t("dtype");e.exports=function(t,e,r){if(!t)throw new TypeError("must specify data as first parameter");if(r=0|+(r||0),Array.isArray(t)&&Array.isArray(t[0])){var i=t[0].length,a=t.length*i;e&&"string"!=typeof e||(e=new(n(e||"float32"))(a+r));var o=e.length-r;if(a!==o)throw new Error("source length "+a+" ("+i+"x"+t.length+") does not match destination length "+o);for(var s=0,l=r;s<t.length;s++)for(var c=0;c<i;c++)e[l++]=t[s][c]}else if(e&&"string"!=typeof e)e.set(t,r);else{var u=n(e||"float32");0===r?e=new u(t):(e=new u(t.length+r)).set(t,r)}return e}},{dtype:133}],144:[function(t,e,r){"use strict";e.exports=function(t){return new c(t||p,null)};var n=0,i=1;function a(t,e,r,n,i,a){this._color=t,this.key=e,this.value=r,this.left=n,this.right=i,this._count=a}function o(t){return new a(t._color,t.key,t.value,t.left,t.right,t._count)}function 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e=this.root,r=[];;){if(r.push(e),e.left){if(t<e.left._count){e=e.left;continue}t-=e.left._count}if(!t)return new f(this,r);if(t-=1,!e.right)break;if(t>=e.right._count)break;e=e.right}return new f(this,[])},u.ge=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<=0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.gt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.lt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.le=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>=0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.find=function(t){for(var e=this._compare,r=this.root,n=[];r;){var i=e(t,r.key);if(n.push(r),0===i)return new 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a(r._color,r.key,r.value,r.left,e[u+1],r._count)}if((r=e[e.length-1]).left&&r.right){var f=e.length;for(r=r.left;r.right;)e.push(r),r=r.right;var h=e[f-1];e.push(new a(r._color,h.key,h.value,r.left,r.right,r._count)),e[f-1].key=r.key,e[f-1].value=r.value;for(u=e.length-2;u>=f;--u)r=e[u],e[u]=new a(r._color,r.key,r.value,r.left,e[u+1],r._count);e[f-1].left=e[f]}if((r=e[e.length-1])._color===n){var p=e[e.length-2];p.left===r?p.left=null:p.right===r&&(p.right=null),e.pop();for(u=0;u<e.length;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(r.left||r.right){r.left?d(r,r.left):r.right&&d(r,r.right),r._color=i;for(u=0;u<e.length-1;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(1===e.length)return new c(this.tree._compare,null);for(u=0;u<e.length;++u)e[u]._count--;var m=e[e.length-2];return function(t){for(var e,r,a,c,u=t.length-1;u>=0;--u){if(e=t[u],0===u)return void(e._color=i);if((r=t[u-1]).left===e){if((a=r.right).right&&a.right._color===n)return c=(a=r.right=o(a)).right=o(a.right),r.right=a.left,a.left=r,a.right=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),void(t[u-1]=a);if(a.left&&a.left._color===n)return c=(a=r.right=o(a)).left=o(a.left),r.right=c.left,a.left=c.right,c.left=r,c.right=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).left===r?f.left=c:f.right=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.right=s(n,a));r.right=s(n,a);continue}a=o(a),r.right=a.left,a.left=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}else{if((a=r.left).left&&a.left._color===n)return c=(a=r.left=o(a)).left=o(a.left),r.left=a.right,a.right=r,a.left=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),void(t[u-1]=a);if(a.right&&a.right._color===n)return c=(a=r.left=o(a)).right=o(a.right),r.left=c.right,a.right=c.left,c.right=r,c.left=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).right===r?f.right=c:f.left=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.left=s(n,a));r.left=s(n,a);continue}var f;a=o(a),r.left=a.right,a.right=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}}}(e),m.left===r?m.left=null:m.right=null,new c(this.tree._compare,e[0])},Object.defineProperty(h,"key",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].key},enumerable:!0}),Object.defineProperty(h,"value",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].value},enumerable:!0}),Object.defineProperty(h,"index",{get:function(){var t=0,e=this._stack;if(0===e.length){var r=this.tree.root;return 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c(this.tree._compare,r[0])},h.prev=function(){var t=this._stack;if(0!==t.length){var e=t[t.length-1];if(e.left)for(e=e.left;e;)t.push(e),e=e.right;else for(t.pop();t.length>0&&t[t.length-1].left===e;)e=t[t.length-1],t.pop()}},Object.defineProperty(h,"hasPrev",{get:function(){var t=this._stack;if(0===t.length)return!1;if(t[t.length-1].left)return!0;for(var e=t.length-1;e>0;--e)if(t[e-1].right===t[e])return!0;return!1}})},{}],145:[function(t,e,r){var n=[.9999999999998099,676.5203681218851,-1259.1392167224028,771.3234287776531,-176.6150291621406,12.507343278686905,-.13857109526572012,9984369578019572e-21,1.5056327351493116e-7],i=607/128,a=[.9999999999999971,57.15623566586292,-59.59796035547549,14.136097974741746,-.4919138160976202,3399464998481189e-20,4652362892704858e-20,-9837447530487956e-20,.0001580887032249125,-.00021026444172410488,.00021743961811521265,-.0001643181065367639,8441822398385275e-20,-26190838401581408e-21,36899182659531625e-22];function o(t){if(t<0)return 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l=i.point(a.geometry[0][s],e,t.z2,t.x,t.y);if(l[0]!==-r&&l[0]!==e+r||l[1]!==-r&&l[1]!==e+r)return!1}return!0}l.prototype.options={maxZoom:14,indexMaxZoom:5,indexMaxPoints:1e5,solidChildren:!1,tolerance:3,extent:4096,buffer:64,debug:0},l.prototype.splitTile=function(t,e,r,n,i,o,l){for(var d=[t,e,r,n],p=this.options,m=p.debug,v=null;d.length;){n=d.pop(),r=d.pop(),e=d.pop(),t=d.pop();var g=1<<e,y=c(e,r,n),b=this.tiles[y],x=e===p.maxZoom?0:p.tolerance/(g*p.extent);if(!b&&(m>1&&console.time("creation"),b=this.tiles[y]=s(t,g,r,n,x,e===p.maxZoom),this.tileCoords.push({z:e,x:r,y:n}),m)){m>1&&(console.log("tile z%d-%d-%d (features: %d, points: %d, simplified: %d)",e,r,n,b.numFeatures,b.numPoints,b.numSimplified),console.timeEnd("creation"));var _="z"+e;this.stats[_]=(this.stats[_]||0)+1,this.total++}if(b.source=t,i){if(e===p.maxZoom||e===i)continue;var w=1<<i-e;if(r!==Math.floor(o/w)||n!==Math.floor(l/w))continue}else 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m=l("labels");l("labelFont")&&(m=!0),o("labelEnable"),a("labelSize"),a("labelPad"),c("labelColor"),o("lineEnable"),o("lineMirror"),a("lineWidth"),c("lineColor"),o("lineTickEnable"),o("lineTickMirror"),a("lineTickLength"),a("lineTickWidth"),c("lineTickColor"),o("gridEnable"),a("gridWidth"),c("gridColor"),o("zeroEnable"),c("zeroLineColor"),a("zeroLineWidth"),o("backgroundEnable"),c("backgroundColor"),this._text?this._text&&(m||u)&&this._text.update(this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont):this._text=n(this.gl,this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont),this._lines&&u&&(this._lines.dispose(),this._lines=null),this._lines||(this._lines=i(this.gl,this.bounds,this.ticks))};var d=[new h,new h,new h];function p(t,e,r,n,i){for(var a=t.primalOffset,o=t.primalMinor,s=t.mirrorOffset,l=t.mirrorMinor,c=n[e],u=0;u<3;++u)if(e!==u){var f=a,h=s,d=o,p=l;c&1<<u&&(f=s,h=a,d=l,p=o),f[u]=r[0][u],h[u]=r[1][u],i[u]>0?(d[u]=-1,p[u]=0):(d[u]=0,p[u]=1)}}var m=[0,0,0],v={model:l,view:l,projection:l};f.isOpaque=function(){return!0},f.isTransparent=function(){return!1},f.drawTransparent=function(t){};var g=[0,0,0],y=[0,0,0],b=[0,0,0];f.draw=function(t){t=t||v;for(var e=this.gl,r=t.model||l,n=t.view||l,i=t.projection||l,a=this.bounds,s=o(r,n,i,a),u=s.cubeEdges,f=s.axis,h=n[12],x=n[13],_=n[14],w=n[15],M=this.pixelRatio*(i[3]*h+i[7]*x+i[11]*_+i[15]*w)/e.drawingBufferHeight,k=0;k<3;++k)this.lastCubeProps.cubeEdges[k]=u[k],this.lastCubeProps.axis[k]=f[k];var A=d;for(k=0;k<3;++k)p(d[k],k,this.bounds,u,f);e=this.gl;var T=m;for(k=0;k<3;++k)this.backgroundEnable[k]?T[k]=f[k]:T[k]=0;this._background.draw(r,n,i,a,T,this.backgroundColor),this._lines.bind(r,n,i,this);for(k=0;k<3;++k){var E=[0,0,0];f[k]>0?E[k]=a[1][k]:E[k]=a[0][k];for(var S=0;S<2;++S){var L=(k+1+S)%3,C=(k+1+(1^S))%3;this.gridEnable[L]&&this._lines.drawGrid(L,C,this.bounds,E,this.gridColor[L],this.gridWidth[L]*this.pixelRatio)}for(S=0;S<2;++S){L=(k+1+S)%3,C=(k+1+(1^S))%3;this.zeroEnable[C]&&a[0][C]<=0&&a[1][C]>=0&&this._lines.drawZero(L,C,this.bounds,E,this.zeroLineColor[C],this.zeroLineWidth[C]*this.pixelRatio)}}for(k=0;k<3;++k){this.lineEnable[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].primalOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio),this.lineMirror[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].mirrorOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio);var P=c(g,A[k].primalMinor),z=c(y,A[k].mirrorMinor),O=this.lineTickLength;for(S=0;S<3;++S){var D=M/r[5*S];P[S]*=O[S]*D,z[S]*=O[S]*D}this.lineTickEnable[k]&&this._lines.drawAxisTicks(k,A[k].primalOffset,P,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio),this.lineTickMirror[k]&&this._lines.drawAxisTicks(k,A[k].mirrorOffset,z,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio)}this._lines.unbind(),this._text.bind(r,n,i,this.pixelRatio);for(k=0;k<3;++k){var I=A[k].primalMinor,R=c(b,A[k].primalOffset);for(S=0;S<3;++S)this.lineTickEnable[k]&&(R[S]+=M*I[S]*Math.max(this.lineTickLength[S],0)/r[5*S]);if(this.tickEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.tickPad[S]/r[5*S];this._text.drawTicks(k,this.tickSize[k],this.tickAngle[k],R,this.tickColor[k])}if(this.labelEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.labelPad[S]/r[5*S];R[k]+=.5*(a[0][k]+a[1][k]),this._text.drawLabel(k,this.labelSize[k],this.labelAngle[k],R,this.labelColor[k])}}this._text.unbind()},f.dispose=function(){this._text.dispose(),this._lines.dispose(),this._background.dispose(),this._lines=null,this._text=null,this._background=null,this.gl=null}},{"./lib/background.js":158,"./lib/cube.js":159,"./lib/lines.js":160,"./lib/text.js":162,"./lib/ticks.js":163}],158:[function(t,e,r){"use strict";e.exports=function(t){for(var e=[],r=[],s=0,l=0;l<3;++l)for(var c=(l+1)%3,u=(l+2)%3,f=[0,0,0],h=[0,0,0],d=-1;d<=1;d+=2){r.push(s,s+2,s+1,s+1,s+2,s+3),f[l]=d,h[l]=d;for(var p=-1;p<=1;p+=2){f[c]=p;for(var m=-1;m<=1;m+=2)f[u]=m,e.push(f[0],f[1],f[2],h[0],h[1],h[2]),s+=1}var v=c;c=u,u=v}var g=n(t,new Float32Array(e)),y=n(t,new Uint16Array(r),t.ELEMENT_ARRAY_BUFFER),b=i(t,[{buffer:g,type:t.FLOAT,size:3,offset:0,stride:24},{buffer:g,type:t.FLOAT,size:3,offset:12,stride:24}],y),x=a(t);return x.attributes.position.location=0,x.attributes.normal.location=1,new o(t,g,b,x)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").bg;function o(t,e,r,n){this.gl=t,this.buffer=e,this.vao=r,this.shader=n}var s=o.prototype;s.draw=function(t,e,r,n,i,a){for(var o=!1,s=0;s<3;++s)o=o||i[s];if(o){var l=this.gl;l.enable(l.POLYGON_OFFSET_FILL),l.polygonOffset(1,2),this.shader.bind(),this.shader.uniforms={model:t,view:e,projection:r,bounds:n,enable:i,colors:a},this.vao.bind(),this.vao.draw(this.gl.TRIANGLES,36),this.vao.unbind(),l.disable(l.POLYGON_OFFSET_FILL)}},s.dispose=function(){this.vao.dispose(),this.buffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],159:[function(t,e,r){"use strict";e.exports=function(t,e,r,a){i(s,e,t),i(s,r,s);for(var d=0,y=0;y<2;++y){u[2]=a[y][2];for(var b=0;b<2;++b){u[1]=a[b][1];for(var x=0;x<2;++x)u[0]=a[x][0],h(l[d],u,s),d+=1}}for(var _=-1,y=0;y<8;++y){for(var w=l[y][3],M=0;M<3;++M)c[y][M]=l[y][M]/w;w<0&&(_<0?_=y:c[y][2]<c[_][2]&&(_=y))}if(_<0){_=0;for(var k=0;k<3;++k){for(var A=(k+2)%3,T=(k+1)%3,E=-1,S=-1,L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T);o(c[C],c[P],c[z],f)<0||(L?E=1:S=1)}if(E<0||S<0)S>E&&(_|=1<<k);else{for(var L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T),O=p([l[C],l[P],l[z],l[C+(1<<A)+(1<<T)]]);L?E=O:S=O}S>E&&(_|=1<<k)}}}for(var D=7^_,I=-1,y=0;y<8;++y)y!==_&&y!==D&&(I<0?I=y:c[I][1]>c[y][1]&&(I=y));for(var R=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D){R<0&&(R=N);var T=c[N];T[0]<c[R][0]&&(R=N)}}for(var F=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D&&N!==R){F<0&&(F=N);var T=c[N];T[0]>c[F][0]&&(F=N)}}var j=m;j[0]=j[1]=j[2]=0,j[n.log2(R^I)]=I&R,j[n.log2(I^F)]=I&F;var B=7^F;B===_||B===D?(B=7^R,j[n.log2(F^B)]=B&F):j[n.log2(R^B)]=B&R;for(var U=v,V=_,k=0;k<3;++k)U[k]=V&1<<k?-1:1;return g};var n=t("bit-twiddle"),i=t("gl-mat4/multiply"),a=(t("gl-mat4/invert"),t("split-polygon")),o=t("robust-orientation"),s=new Array(16),l=(new Array(16),new Array(8)),c=new Array(8),u=new Array(3),f=[0,0,0];function h(t,e,r){for(var n=0;n<4;++n){t[n]=r[12+n];for(var i=0;i<3;++i)t[n]+=e[i]*r[4*i+n]}}!function(){for(var t=0;t<8;++t)l[t]=[1,1,1,1],c[t]=[1,1,1]}();var d=[[0,0,1,0,0],[0,0,-1,1,0],[0,-1,0,1,0],[0,1,0,1,0],[-1,0,0,1,0],[1,0,0,1,0]];function p(t){for(var e=0;e<d.length;++e)if((t=a.positive(t,d[e])).length<3)return 0;var r=t[0],n=r[0]/r[3],i=r[1]/r[3],o=0;for(e=1;e+1<t.length;++e){var s=t[e],l=t[e+1],c=s[0]/s[3]-n,u=s[1]/s[3]-i,f=l[0]/l[3]-n,h=l[1]/l[3]-i;o+=Math.abs(c*h-u*f)}return o}var m=[1,1,1],v=[0,0,0],g={cubeEdges:m,axis:v}},{"bit-twiddle":71,"gl-mat4/invert":186,"gl-mat4/multiply":188,"robust-orientation":495,"split-polygon":515}],160:[function(t,e,r){"use strict";e.exports=function(t,e,r){var o=[],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[0,0,0];o.push(0,0,1,0,1,1,0,0,-1,0,0,-1,0,1,1,0,1,-1);for(var f=0;f<3;++f){for(var h=o.length/3|0,p=0;p<r[f].length;++p){var m=+r[f][p].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;s[f]=h,l[f]=v-h;for(var h=o.length/3|0,g=0;g<r[f].length;++g){var m=+r[f][g].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;c[f]=h,u[f]=v-h}var y=n(t,new Float32Array(o)),b=i(t,[{buffer:y,type:t.FLOAT,size:3,stride:0,offset:0}]),x=a(t);return x.attributes.position.location=0,new d(t,y,b,x,l,s,u,c)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").line,o=[0,0,0],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[1,1];function f(t){return t[0]=t[1]=t[2]=0,t}function h(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t}function d(t,e,r,n,i,a,o,s){this.gl=t,this.vertBuffer=e,this.vao=r,this.shader=n,this.tickCount=i,this.tickOffset=a,this.gridCount=o,this.gridOffset=s}var p=d.prototype;p.bind=function(t,e,r){this.shader.bind(),this.shader.uniforms.model=t,this.shader.uniforms.view=e,this.shader.uniforms.projection=r,u[0]=this.gl.drawingBufferWidth,u[1]=this.gl.drawingBufferHeight,this.shader.uniforms.screenShape=u,this.vao.bind()},p.unbind=function(){this.vao.unbind()},p.drawAxisLine=function(t,e,r,n,i){var a=f(s);this.shader.uniforms.majorAxis=s,a[t]=e[1][t]-e[0][t],this.shader.uniforms.minorAxis=a;var o,u=h(c,r);u[t]+=e[0][t],this.shader.uniforms.offset=u,this.shader.uniforms.lineWidth=i,this.shader.uniforms.color=n,(o=f(l))[(t+2)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6),(o=f(l))[(t+1)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6)},p.drawAxisTicks=function(t,e,r,n,i){if(this.tickCount[t]){var a=f(o);a[t]=1,this.shader.uniforms.majorAxis=a,this.shader.uniforms.offset=e,this.shader.uniforms.minorAxis=r,this.shader.uniforms.color=n,this.shader.uniforms.lineWidth=i;var s=f(l);s[t]=1,this.shader.uniforms.screenAxis=s,this.vao.draw(this.gl.TRIANGLES,this.tickCount[t],this.tickOffset[t])}},p.drawGrid=function(t,e,r,n,i,a){if(this.gridCount[t]){var u=f(s);u[e]=r[1][e]-r[0][e],this.shader.uniforms.minorAxis=u;var d=h(c,n);d[e]+=r[0][e],this.shader.uniforms.offset=d;var p=f(o);p[t]=1,this.shader.uniforms.majorAxis=p;var m=f(l);m[t]=1,this.shader.uniforms.screenAxis=m,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,this.gridCount[t],this.gridOffset[t])}},p.drawZero=function(t,e,r,n,i,a){var o=f(s);this.shader.uniforms.majorAxis=o,o[t]=r[1][t]-r[0][t],this.shader.uniforms.minorAxis=o;var u=h(c,n);u[t]+=r[0][t],this.shader.uniforms.offset=u;var d=f(l);d[e]=1,this.shader.uniforms.screenAxis=d,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,6)},p.dispose=function(){this.vao.dispose(),this.vertBuffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],161:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, majorAxis, minorAxis, screenAxis;\nuniform float lineWidth;\nuniform vec2 screenShape;\n\nvec3 project(vec3 p) {\n  vec4 pp = projection * view * model * vec4(p, 1.0);\n  return pp.xyz / max(pp.w, 0.0001);\n}\n\nvoid main() {\n  vec3 major = position.x * majorAxis;\n  vec3 minor = position.y * minorAxis;\n\n  vec3 vPosition = major + minor + offset;\n  vec3 pPosition = project(vPosition);\n  vec3 offset = project(vPosition + screenAxis * position.z);\n\n  vec2 screen = normalize((offset - pPosition).xy * screenShape) / screenShape;\n\n  gl_Position = vec4(pPosition + vec3(0.5 * screen * lineWidth, 0), 1.0);\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.line=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"}])};var s=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, axis;\nuniform float scale, angle, pixelScale;\nuniform vec2 resolution;\n\nvoid main() {  \n  //Compute plane offset\n  vec2 planeCoord = position.xy * pixelScale;\n  mat2 planeXform = scale * mat2(cos(angle), sin(angle),\n                                -sin(angle), cos(angle));\n  vec2 viewOffset = 2.0 * planeXform * planeCoord / resolution;\n\n  //Compute world offset\n  float axisDistance = position.z;\n  vec3 dataPosition = axisDistance * axis + offset;\n  vec4 worldPosition = model * vec4(dataPosition, 1);\n  \n  //Compute clip position\n  vec4 viewPosition = view * worldPosition;\n  vec4 clipPosition = projection * viewPosition;\n  clipPosition /= clipPosition.w;\n\n  //Apply text offset in clip coordinates\n  clipPosition += vec4(viewOffset, 0, 0);\n\n  //Done\n  gl_Position = clipPosition;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.text=function(t){return i(t,s,l,null,[{name:"position",type:"vec3"}])};var c=n(["#define GLSLIFY 1\nattribute vec3 position;\nattribute vec3 normal;\n\nuniform mat4 model, view, projection;\nuniform vec3 enable;\nuniform vec3 bounds[2];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  if(dot(normal, enable) > 0.0) {\n    vec3 nPosition = mix(bounds[0], bounds[1], 0.5 * (position + 1.0));\n    gl_Position = projection * view * model * vec4(nPosition, 1.0);\n  } else {\n    gl_Position = vec4(0,0,0,0);\n  }\n  colorChannel = abs(normal);\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 colors[3];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  gl_FragColor = colorChannel.x * colors[0] + \n                 colorChannel.y * colors[1] +\n                 colorChannel.z * colors[2];\n}"]);r.bg=function(t){return i(t,c,u,null,[{name:"position",type:"vec3"},{name:"normal",type:"vec3"}])}},{"gl-shader":220,glslify:253}],162:[function(t,e,r){(function(r){"use strict";e.exports=function(t,e,r,a,s,l){var u=n(t),f=i(t,[{buffer:u,size:3}]),h=o(t);h.attributes.position.location=0;var d=new c(t,h,u,f);return d.update(e,r,a,s,l),d};var n=t("gl-buffer"),i=t("gl-vao"),a=t("vectorize-text"),o=t("./shaders").text,s=window||r.global||{},l=s.__TEXT_CACHE||{};s.__TEXT_CACHE={};function c(t,e,r,n){this.gl=t,this.shader=e,this.buffer=r,this.vao=n,this.tickOffset=this.tickCount=this.labelOffset=this.labelCount=null}var u=c.prototype,f=[0,0];u.bind=function(t,e,r,n){this.vao.bind(),this.shader.bind();var i=this.shader.uniforms;i.model=t,i.view=e,i.projection=r,i.pixelScale=n,f[0]=this.gl.drawingBufferWidth,f[1]=this.gl.drawingBufferHeight,this.shader.uniforms.resolution=f},u.unbind=function(){this.vao.unbind()},u.update=function(t,e,r,n,i){this.gl;var o=[];function s(t,e,r,n){var i=l[r];i||(i=l[r]={});var s=i[e];s||(s=i[e]=function(t,e){try{return a(t,e)}catch(t){return console.warn("error vectorizing text:",t),{cells:[],positions:[]}}}(e,{triangles:!0,font:r,textAlign:"center",textBaseline:"middle"}));for(var c=(n||12)/12,u=s.positions,f=s.cells,h=0,d=f.length;h<d;++h)for(var p=f[h],m=2;m>=0;--m){var 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i.length}l.update=function(t){"lineWidth"in(t=t||{})&&(this.lineWidth=t.lineWidth,Array.isArray(this.lineWidth)||(this.lineWidth=[this.lineWidth,this.lineWidth,this.lineWidth])),"capSize"in t&&(this.capSize=t.capSize,Array.isArray(this.capSize)||(this.capSize=[this.capSize,this.capSize,this.capSize])),"opacity"in t&&(this.opacity=t.opacity);var e=t.color||[[0,0,0],[0,0,0],[0,0,0]],r=t.position,n=t.error;if(Array.isArray(e[0])||(e=[e,e,e]),r&&n){var i=[],a=r.length,o=0;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.lineCount=[0,0,0];for(var s=0;s<3;++s){this.lineOffset[s]=o;t:for(var l=0;l<a;++l){for(var u=r[l],h=0;h<3;++h)if(isNaN(u[h])||!isFinite(u[h]))continue t;var d=n[l],p=e[s];if(Array.isArray(p[0])&&(p=e[l]),3===p.length&&(p=[p[0],p[1],p[2],1]),!isNaN(d[0][s])&&!isNaN(d[1][s])){var m;if(d[0][s]<0)(m=u.slice())[s]+=d[0][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s);if(d[1][s]>0)(m=u.slice())[s]+=d[1][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s)}}this.lineCount[s]=o-this.lineOffset[s]}this.buffer.update(i)}},l.dispose=function(){this.shader.dispose(),this.buffer.dispose(),this.vao.dispose()}},{"./shaders/index":170,"gl-buffer":165,"gl-vao":237}],169:[function(t,e,r){e.exports=function(t){"string"==typeof t&&(t=[t]);for(var e=[].slice.call(arguments,1),r=[],n=0;n<t.length-1;n++)r.push(t[n],e[n]||"");return r.push(t[n]),r.join("")}},{}],170:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, offset;\nattribute vec4 color;\nuniform mat4 model, view, projection;\nuniform float capSize;\nvarying vec4 fragColor;\nvarying vec3 fragPosition;\n\nvoid main() {\n  vec4 worldPosition  = model * vec4(position, 1.0);\n  worldPosition       = (worldPosition / worldPosition.w) + vec4(capSize * offset, 0.0);\n  gl_Position         = projection * view * worldPosition;\n  fragColor           = color;\n  fragPosition        = position;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec3 clipBounds[2];\nuniform float opacity;\nvarying vec3 fragPosition;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(fragPosition, clipBounds[0])) || any(greaterThan(fragPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = opacity * fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"offset",type:"vec3"}])}},{"gl-shader":220,glslify:169}],171:[function(t,e,r){"use strict";var n=t("gl-texture2d");e.exports=function(t,e,r,n){i||(i=t.FRAMEBUFFER_UNSUPPORTED,a=t.FRAMEBUFFER_INCOMPLETE_ATTACHMENT,o=t.FRAMEBUFFER_INCOMPLETE_DIMENSIONS,s=t.FRAMEBUFFER_INCOMPLETE_MISSING_ATTACHMENT);var c=t.getExtension("WEBGL_draw_buffers");!l&&c&&function(t,e){var r=t.getParameter(e.MAX_COLOR_ATTACHMENTS_WEBGL);l=new Array(r+1);for(var n=0;n<=r;++n){for(var i=new Array(r),a=0;a<n;++a)i[a]=t.COLOR_ATTACHMENT0+a;for(var a=n;a<r;++a)i[a]=t.NONE;l[n]=i}}(t,c);Array.isArray(e)&&(n=r,r=0|e[1],e=0|e[0]);if("number"!=typeof e)throw new Error("gl-fbo: Missing shape parameter");var u=t.getParameter(t.MAX_RENDERBUFFER_SIZE);if(e<0||e>u||r<0||r>u)throw new Error("gl-fbo: Parameters are too large for FBO");var f=1;if("color"in(n=n||{})){if((f=Math.max(0|n.color,0))<0)throw new Error("gl-fbo: Must specify a nonnegative number of colors");if(f>1){if(!c)throw new Error("gl-fbo: Multiple draw buffer extension not supported");if(f>t.getParameter(c.MAX_COLOR_ATTACHMENTS_WEBGL))throw new Error("gl-fbo: Context does not support "+f+" draw buffers")}}var h=t.UNSIGNED_BYTE,d=t.getExtension("OES_texture_float");if(n.float&&f>0){if(!d)throw new Error("gl-fbo: Context does not support floating point textures");h=t.FLOAT}else n.preferFloat&&f>0&&d&&(h=t.FLOAT);var m=!0;"depth"in n&&(m=!!n.depth);var v=!1;"stencil"in n&&(v=!!n.stencil);return new p(t,e,r,h,f,m,v,c)};var i,a,o,s,l=null;function c(t){return[t.getParameter(t.FRAMEBUFFER_BINDING),t.getParameter(t.RENDERBUFFER_BINDING),t.getParameter(t.TEXTURE_BINDING_2D)]}function u(t,e){t.bindFramebuffer(t.FRAMEBUFFER,e[0]),t.bindRenderbuffer(t.RENDERBUFFER,e[1]),t.bindTexture(t.TEXTURE_2D,e[2])}function f(t){switch(t){case i:throw new Error("gl-fbo: Framebuffer unsupported");case a:throw new Error("gl-fbo: Framebuffer incomplete attachment");case o:throw new Error("gl-fbo: Framebuffer incomplete dimensions");case s:throw new Error("gl-fbo: Framebuffer incomplete missing attachment");default:throw new Error("gl-fbo: Framebuffer failed for unspecified reason")}}function h(t,e,r,i,a,o){if(!i)return null;var s=n(t,e,r,a,i);return s.magFilter=t.NEAREST,s.minFilter=t.NEAREST,s.mipSamples=1,s.bind(),t.framebufferTexture2D(t.FRAMEBUFFER,o,t.TEXTURE_2D,s.handle,0),s}function d(t,e,r,n,i){var a=t.createRenderbuffer();return t.bindRenderbuffer(t.RENDERBUFFER,a),t.renderbufferStorage(t.RENDERBUFFER,n,e,r),t.framebufferRenderbuffer(t.FRAMEBUFFER,i,t.RENDERBUFFER,a),a}function p(t,e,r,n,i,a,o,s){this.gl=t,this._shape=[0|e,0|r],this._destroyed=!1,this._ext=s,this.color=new Array(i);for(var p=0;p<i;++p)this.color[p]=null;this._color_rb=null,this.depth=null,this._depth_rb=null,this._colorType=n,this._useDepth=a,this._useStencil=o;var m=this,v=[0|e,0|r];Object.defineProperties(v,{0:{get:function(){return m._shape[0]},set:function(t){return m.width=t}},1:{get:function(){return m._shape[1]},set:function(t){return m.height=t}}}),this._shapeVector=v,function(t){var e=c(t.gl),r=t.gl,n=t.handle=r.createFramebuffer(),i=t._shape[0],a=t._shape[1],o=t.color.length,s=t._ext,p=t._useStencil,m=t._useDepth,v=t._colorType;r.bindFramebuffer(r.FRAMEBUFFER,n);for(var g=0;g<o;++g)t.color[g]=h(r,i,a,v,r.RGBA,r.COLOR_ATTACHMENT0+g);0===o?(t._color_rb=d(r,i,a,r.RGBA4,r.COLOR_ATTACHMENT0),s&&s.drawBuffersWEBGL(l[0])):o>1&&s.drawBuffersWEBGL(l[o]);var y=r.getExtension("WEBGL_depth_texture");y?p?t.depth=h(r,i,a,y.UNSIGNED_INT_24_8_WEBGL,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m&&(t.depth=h(r,i,a,r.UNSIGNED_SHORT,r.DEPTH_COMPONENT,r.DEPTH_ATTACHMENT)):m&&p?t._depth_rb=d(r,i,a,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m?t._depth_rb=d(r,i,a,r.DEPTH_COMPONENT16,r.DEPTH_ATTACHMENT):p&&(t._depth_rb=d(r,i,a,r.STENCIL_INDEX,r.STENCIL_ATTACHMENT));var b=r.checkFramebufferStatus(r.FRAMEBUFFER);if(b!==r.FRAMEBUFFER_COMPLETE){for(t._destroyed=!0,r.bindFramebuffer(r.FRAMEBUFFER,null),r.deleteFramebuffer(t.handle),t.handle=null,t.depth&&(t.depth.dispose(),t.depth=null),t._depth_rb&&(r.deleteRenderbuffer(t._depth_rb),t._depth_rb=null),g=0;g<t.color.length;++g)t.color[g].dispose(),t.color[g]=null;t._color_rb&&(r.deleteRenderbuffer(t._color_rb),t._color_rb=null),u(r,e),f(b)}u(r,e)}(this)}var m=p.prototype;function v(t,e,r){if(t._destroyed)throw new Error("gl-fbo: Can't resize destroyed FBO");if(t._shape[0]!==e||t._shape[1]!==r){var n=t.gl,i=n.getParameter(n.MAX_RENDERBUFFER_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-fbo: Can't resize FBO, invalid dimensions");t._shape[0]=e,t._shape[1]=r;for(var a=c(n),o=0;o<t.color.length;++o)t.color[o].shape=t._shape;t._color_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._color_rb),n.renderbufferStorage(n.RENDERBUFFER,n.RGBA4,t._shape[0],t._shape[1])),t.depth&&(t.depth.shape=t._shape),t._depth_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._depth_rb),t._useDepth&&t._useStencil?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_STENCIL,t._shape[0],t._shape[1]):t._useDepth?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_COMPONENT16,t._shape[0],t._shape[1]):t._useStencil&&n.renderbufferStorage(n.RENDERBUFFER,n.STENCIL_INDEX,t._shape[0],t._shape[1])),n.bindFramebuffer(n.FRAMEBUFFER,t.handle);var s=n.checkFramebufferStatus(n.FRAMEBUFFER);s!==n.FRAMEBUFFER_COMPLETE&&(t.dispose(),u(n,a),f(s)),u(n,a)}}Object.defineProperties(m,{shape:{get:function(){return this._destroyed?[0,0]:this._shapeVector},set:function(t){if(Array.isArray(t)||(t=[0|t,0|t]),2!==t.length)throw new Error("gl-fbo: Shape vector must be length 2");var e=0|t[0],r=0|t[1];return v(this,e,r),[e,r]},enumerable:!1},width:{get:function(){return this._destroyed?0:this._shape[0]},set:function(t){return v(this,t|=0,this._shape[1]),t},enumerable:!1},height:{get:function(){return this._destroyed?0:this._shape[1]},set:function(t){return t|=0,v(this,this._shape[0],t),t},enumerable:!1}}),m.bind=function(){if(!this._destroyed){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,this.handle),t.viewport(0,0,this._shape[0],this._shape[1])}},m.dispose=function(){if(!this._destroyed){this._destroyed=!0;var t=this.gl;t.deleteFramebuffer(this.handle),this.handle=null,this.depth&&(this.depth.dispose(),this.depth=null),this._depth_rb&&(t.deleteRenderbuffer(this._depth_rb),this._depth_rb=null);for(var e=0;e<this.color.length;++e)this.color[e].dispose(),this.color[e]=null;this._color_rb&&(t.deleteRenderbuffer(this._color_rb),this._color_rb=null)}}},{"gl-texture2d":233}],172:[function(t,e,r){var n=t("sprintf-js").sprintf,i=t("gl-constants/lookup"),a=t("glsl-shader-name"),o=t("add-line-numbers");e.exports=function(t,e,r){"use strict";var s=a(e)||"of unknown name (see npm glsl-shader-name)",l="unknown type";void 0!==r&&(l=r===i.FRAGMENT_SHADER?"fragment":"vertex");for(var c=n("Error compiling %s shader %s:\n",l,s),u=n("%s%s",c,t),f=t.split("\n"),h={},d=0;d<f.length;d++){var p=f[d];if(""!==p&&"\0"!==p){var m=parseInt(p.split(":")[2]);if(isNaN(m))throw new Error(n("Could not parse error: %s",p));h[m]=p}}for(var v=o(e).split("\n"),d=0;d<v.length;d++)if(h[d+3]||h[d+2]||h[d+1]){var g=v[d];if(c+=g+"\n",h[d+1]){var y=h[d+1];y=y.substr(y.split(":",3).join(":").length+1).trim(),c+=n("^^^ %s\n\n",y)}}return{long:c.trim(),short:u.trim()}}},{"add-line-numbers":44,"gl-constants/lookup":167,"glsl-shader-name":245,"sprintf-js":516}],173:[function(t,e,r){"use strict";e.exports=function(t,e){var r=t.gl,n=o(r,l.vertex,l.fragment),i=o(r,l.pickVertex,l.pickFragment),a=s(r),u=s(r),f=s(r),h=s(r),d=new c(t,n,i,a,u,f,h);return d.update(e),t.addObject(d),d};var n=t("binary-search-bounds"),i=t("iota-array"),a=t("typedarray-pool"),o=t("gl-shader"),s=t("gl-buffer"),l=t("./lib/shaders");function c(t,e,r,n,i,a,o){this.plot=t,this.shader=e,this.pickShader=r,this.positionBuffer=n,this.weightBuffer=i,this.colorBuffer=a,this.idBuffer=o,this.xData=[],this.yData=[],this.shape=[0,0],this.bounds=[1/0,1/0,-1/0,-1/0],this.pickOffset=0}var u,f=c.prototype,h=[0,0,1,0,0,1,1,0,1,1,0,1];f.draw=(u=[1,0,0,0,1,0,0,0,1],function(){var t=this.plot,e=this.shader,r=this.bounds,n=this.numVertices;if(!(n<=0)){var i=t.gl,a=t.dataBox,o=r[2]-r[0],s=r[3]-r[1],l=a[2]-a[0],c=a[3]-a[1];u[0]=2*o/l,u[4]=2*s/c,u[6]=2*(r[0]-a[0])/l-1,u[7]=2*(r[1]-a[1])/c-1,e.bind();var f=e.uniforms;f.viewTransform=u,f.shape=this.shape;var h=e.attributes;this.positionBuffer.bind(),h.position.pointer(),this.weightBuffer.bind(),h.weight.pointer(i.UNSIGNED_BYTE,!1),this.colorBuffer.bind(),h.color.pointer(i.UNSIGNED_BYTE,!0),i.drawArrays(i.TRIANGLES,0,n)}}),f.drawPick=function(){var t=[1,0,0,0,1,0,0,0,1],e=[0,0,0,0];return function(r){var n=this.plot,i=this.pickShader,a=this.bounds,o=this.numVertices;if(!(o<=0)){var s=n.gl,l=n.dataBox,c=a[2]-a[0],u=a[3]-a[1],f=l[2]-l[0],h=l[3]-l[1];t[0]=2*c/f,t[4]=2*u/h,t[6]=2*(a[0]-l[0])/f-1,t[7]=2*(a[1]-l[1])/h-1;for(var d=0;d<4;++d)e[d]=r>>8*d&255;this.pickOffset=r,i.bind();var p=i.uniforms;p.viewTransform=t,p.pickOffset=e,p.shape=this.shape;var m=i.attributes;return this.positionBuffer.bind(),m.position.pointer(),this.weightBuffer.bind(),m.weight.pointer(s.UNSIGNED_BYTE,!1),this.idBuffer.bind(),m.pickId.pointer(s.UNSIGNED_BYTE,!1),s.drawArrays(s.TRIANGLES,0,o),r+this.shape[0]*this.shape[1]}}}(),f.pick=function(t,e,r){var n=this.pickOffset,i=this.shape[0]*this.shape[1];if(r<n||r>=n+i)return null;var a=r-n,o=this.xData,s=this.yData;return{object:this,pointId:a,dataCoord:[o[a%this.shape[0]],s[a/this.shape[0]|0]]}},f.update=function(t){var e=(t=t||{}).shape||[0,0],r=t.x||i(e[0]),o=t.y||i(e[1]),s=t.z||new Float32Array(e[0]*e[1]);this.xData=r,this.yData=o;var l=t.colorLevels||[0],c=t.colorValues||[0,0,0,1],u=l.length,f=this.bounds,d=f[0]=r[0],p=f[1]=o[0],m=1/((f[2]=r[r.length-1])-d),v=1/((f[3]=o[o.length-1])-p),g=e[0],y=e[1];this.shape=[g,y];var b=(g-1)*(y-1)*(h.length>>>1);this.numVertices=b;for(var x=a.mallocUint8(4*b),_=a.mallocFloat32(2*b),w=a.mallocUint8(2*b),M=a.mallocUint32(b),k=0,A=0;A<y-1;++A)for(var T=v*(o[A]-p),E=v*(o[A+1]-p),S=0;S<g-1;++S)for(var L=m*(r[S]-d),C=m*(r[S+1]-d),P=0;P<h.length;P+=2){var z,O,D,I,R=h[P],N=h[P+1],F=s[(A+N)*g+(S+R)],j=n.le(l,F);if(j<0)z=c[0],O=c[1],D=c[2],I=c[3];else if(j===u-1)z=c[4*u-4],O=c[4*u-3],D=c[4*u-2],I=c[4*u-1];else{var B=(F-l[j])/(l[j+1]-l[j]),U=1-B,V=4*j,q=4*(j+1);z=U*c[V]+B*c[q],O=U*c[V+1]+B*c[q+1],D=U*c[V+2]+B*c[q+2],I=U*c[V+3]+B*c[q+3]}x[4*k]=255*z,x[4*k+1]=255*O,x[4*k+2]=255*D,x[4*k+3]=255*I,_[2*k]=.5*L+.5*C,_[2*k+1]=.5*T+.5*E,w[2*k]=R,w[2*k+1]=N,M[k]=A*g+S,k+=1}this.positionBuffer.update(_),this.weightBuffer.update(w),this.colorBuffer.update(x),this.idBuffer.update(M),a.free(_),a.free(x),a.free(w),a.free(M)},f.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.positionBuffer.dispose(),this.weightBuffer.dispose(),this.colorBuffer.dispose(),this.idBuffer.dispose(),this.plot.removeObject(this)}},{"./lib/shaders":174,"binary-search-bounds":175,"gl-buffer":165,"gl-shader":220,"iota-array":261,"typedarray-pool":534}],174:[function(t,e,r){"use strict";var n=t("glslify");e.exports={fragment:n(["precision lowp float;\n#define GLSLIFY 1\nvarying vec4 fragColor;\nvoid main() {\n  gl_FragColor = vec4(fragColor.rgb * fragColor.a, fragColor.a);\n}\n"]),vertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 color;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  fragColor = color;\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"]),pickFragment:n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nuniform vec2 shape;\nuniform vec4 pickOffset;\n\nvoid main() {\n  vec2 d = step(.5, vWeight);\n  vec4 id = fragId + pickOffset;\n  id.x += d.x + d.y*shape.x;\n\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  gl_FragColor = id/255.;\n}\n"]),pickVertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nvoid main() {\n  vWeight = weight;\n\n  fragId = pickId;\n\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"])}},{glslify:253}],175:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],176:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, nextPosition;\nattribute float arcLength, lineWidth;\nattribute vec4 color;\n\nuniform vec2 screenShape;\nuniform float pixelRatio;\nuniform mat4 model, view, projection;\n\nvarying vec4 fragColor;\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\n\nvoid main() {\n  vec4 projected = projection * view * model * vec4(position, 1.0);\n  vec4 tangentClip = projection * view * model * vec4(nextPosition - position, 0.0);\n  vec2 tangent = normalize(screenShape * tangentClip.xy);\n  vec2 offset = 0.5 * pixelRatio * lineWidth * vec2(tangent.y, -tangent.x) / screenShape;\n\n  gl_Position = vec4(projected.xy + projected.w * offset, projected.zw);\n\n  worldPosition = position;\n  pixelArcLength = arcLength;\n  fragColor = color;\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3      clipBounds[2];\nuniform sampler2D dashTexture;\nuniform float     dashScale;\nuniform float     opacity;\n\nvarying vec3    worldPosition;\nvarying float   pixelArcLength;\nvarying vec4    fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  float dashWeight = texture2D(dashTexture, vec2(dashScale * pixelArcLength, 0)).r;\n  if(dashWeight < 0.5) {\n    discard;\n  }\n  gl_FragColor = fragColor * opacity;\n}\n"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\n#define FLOAT_MAX  1.70141184e38\n#define FLOAT_MIN  1.17549435e-38\n\nlowp vec4 encode_float_1540259130(highp float v) {\n  highp float av = abs(v);\n\n  //Handle special cases\n  if(av < FLOAT_MIN) {\n    return vec4(0.0, 0.0, 0.0, 0.0);\n  } else if(v > FLOAT_MAX) {\n    return vec4(127.0, 128.0, 0.0, 0.0) / 255.0;\n  } else if(v < -FLOAT_MAX) {\n    return vec4(255.0, 128.0, 0.0, 0.0) / 255.0;\n  }\n\n  highp vec4 c = vec4(0,0,0,0);\n\n  //Compute exponent and mantissa\n  highp float e = floor(log2(av));\n  highp float m = av * pow(2.0, -e) - 1.0;\n  \n  //Unpack mantissa\n  c[1] = floor(128.0 * m);\n  m -= c[1] / 128.0;\n  c[2] = floor(32768.0 * m);\n  m -= c[2] / 32768.0;\n  c[3] = floor(8388608.0 * m);\n  \n  //Unpack exponent\n  highp float ebias = e + 127.0;\n  c[0] = floor(ebias / 2.0);\n  ebias -= c[0] * 2.0;\n  c[1] += floor(ebias) * 128.0; \n\n  //Unpack sign bit\n  c[0] += 128.0 * step(0.0, -v);\n\n  //Scale back to range\n  return c / 255.0;\n}\n\nuniform float pickId;\nuniform vec3 clipBounds[2];\n\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId/255.0, encode_float_1540259130(pixelArcLength).xyz);\n}"]),l=[{name:"position",type:"vec3"},{name:"nextPosition",type:"vec3"},{name:"arcLength",type:"float"},{name:"lineWidth",type:"float"},{name:"color",type:"vec4"}];r.createShader=function(t){return i(t,a,o,null,l)},r.createPickShader=function(t){return i(t,a,s,null,l)}},{"gl-shader":220,glslify:253}],177:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl||t.scene&&t.scene.gl,r=u(e);r.attributes.position.location=0,r.attributes.nextPosition.location=1,r.attributes.arcLength.location=2,r.attributes.lineWidth.location=3,r.attributes.color.location=4;var o=f(e);o.attributes.position.location=0,o.attributes.nextPosition.location=1,o.attributes.arcLength.location=2,o.attributes.lineWidth.location=3,o.attributes.color.location=4;for(var s=n(e),c=i(e,[{buffer:s,size:3,offset:0,stride:48},{buffer:s,size:3,offset:12,stride:48},{buffer:s,size:1,offset:24,stride:48},{buffer:s,size:1,offset:28,stride:48},{buffer:s,size:4,offset:32,stride:48}]),h=l(new Array(1024),[256,1,4]),d=0;d<1024;++d)h.data[d]=255;var p=a(e,h);p.wrap=e.REPEAT;var m=new v(e,r,o,s,c,p);return m.update(t),m};var n=t("gl-buffer"),i=t("gl-vao"),a=t("gl-texture2d"),o=t("glsl-read-float"),s=t("binary-search-bounds"),l=t("ndarray"),c=t("./lib/shaders"),u=c.createShader,f=c.createPickShader,h=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function d(t,e){for(var r=0,n=0;n<3;++n){var i=t[n]-e[n];r+=i*i}return Math.sqrt(r)}function p(t){for(var e=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],r=0;r<3;++r)e[0][r]=Math.max(t[0][r],e[0][r]),e[1][r]=Math.min(t[1][r],e[1][r]);return e}function m(t,e,r,n){this.arcLength=t,this.position=e,this.index=r,this.dataCoordinate=n}function v(t,e,r,n,i,a){this.gl=t,this.shader=e,this.pickShader=r,this.buffer=n,this.vao=i,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.points=[],this.arcLength=[],this.vertexCount=0,this.bounds=[[0,0,0],[0,0,0]],this.pickId=0,this.lineWidth=1,this.texture=a,this.dashScale=1,this.opacity=1,this.dirty=!0,this.pixelRatio=1}var g=v.prototype;g.isTransparent=function(){return this.opacity<1},g.isOpaque=function(){return this.opacity>=1},g.pickSlots=1,g.setPickBase=function(t){this.pickId=t},g.drawTransparent=g.draw=function(t){var e=this.gl,r=this.shader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,clipBounds:p(this.clipBounds),dashTexture:this.texture.bind(),dashScale:this.dashScale/this.arcLength[this.arcLength.length-1],opacity:this.opacity,screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.drawPick=function(t){var e=this.gl,r=this.pickShader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,pickId:this.pickId,clipBounds:p(this.clipBounds),screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.update=function(t){var e,r;this.dirty=!0;var n=!!t.connectGaps;"dashScale"in t&&(this.dashScale=t.dashScale),"opacity"in t&&(this.opacity=+t.opacity);var i=t.position||t.positions;if(i){var a=t.color||t.colors||[0,0,0,1],o=t.lineWidth||1,c=[],u=[],f=[],h=0,p=0,m=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],v=!1;t:for(e=1;e<i.length;++e){var g,y,b,x=i[e-1],_=i[e];for(u.push(h),f.push(x.slice()),r=0;r<3;++r){if(isNaN(x[r])||isNaN(_[r])||!isFinite(x[r])||!isFinite(_[r])){if(!n&&c.length>0){for(var w=0;w<24;++w)c.push(c[c.length-12]);p+=2,v=!0}continue t}m[0][r]=Math.min(m[0][r],x[r],_[r]),m[1][r]=Math.max(m[1][r],x[r],_[r])}Array.isArray(a[0])?(g=a[e-1],y=a[e]):g=y=a,3===g.length&&(g=[g[0],g[1],g[2],1]),3===y.length&&(y=[y[0],y[1],y[2],1]),b=Array.isArray(o)?o[e-1]:o;var M=h;if(h+=d(x,_),v){for(r=0;r<2;++r)c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3]);p+=2,v=!1}c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3],x[0],x[1],x[2],_[0],_[1],_[2],M,-b,g[0],g[1],g[2],g[3],_[0],_[1],_[2],x[0],x[1],x[2],h,-b,y[0],y[1],y[2],y[3],_[0],_[1],_[2],x[0],x[1],x[2],h,b,y[0],y[1],y[2],y[3]),p+=4}if(this.buffer.update(c),u.push(h),f.push(i[i.length-1].slice()),this.bounds=m,this.vertexCount=p,this.points=f,this.arcLength=u,"dashes"in t){var k=t.dashes.slice();for(k.unshift(0),e=1;e<k.length;++e)k[e]=k[e-1]+k[e];var A=l(new Array(1024),[256,1,4]);for(e=0;e<256;++e){for(r=0;r<4;++r)A.set(e,0,r,0);1&s.le(k,k[k.length-1]*e/255)?A.set(e,0,0,0):A.set(e,0,0,255)}this.texture.setPixels(A)}}},g.dispose=function(){this.shader.dispose(),this.vao.dispose(),this.buffer.dispose()},g.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=o(t.value[0],t.value[1],t.value[2],0),r=s.le(this.arcLength,e);if(r<0)return null;if(r===this.arcLength.length-1)return new m(this.arcLength[this.arcLength.length-1],this.points[this.points.length-1].slice(),r);for(var n=this.points[r],i=this.points[Math.min(r+1,this.points.length-1)],a=(e-this.arcLength[r])/(this.arcLength[r+1]-this.arcLength[r]),l=1-a,c=[0,0,0],u=0;u<3;++u)c[u]=l*n[u]+a*i[u];var f=Math.min(a<.5?r:r+1,this.points.length-1);return new m(e,c,f,this.points[f])}},{"./lib/shaders":176,"binary-search-bounds":70,"gl-buffer":165,"gl-texture2d":233,"gl-vao":237,"glsl-read-float":244,ndarray:439}],178:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r*a-i*n;return o?(o=1/o,t[0]=a*o,t[1]=-n*o,t[2]=-i*o,t[3]=r*o,t):null}},{}],179:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=u*o-s*c,h=-u*a+s*l,d=c*a-o*l,p=r*f+n*h+i*d;return p?(p=1/p,t[0]=f*p,t[1]=(-u*n+i*c)*p,t[2]=(s*n-i*o)*p,t[3]=h*p,t[4]=(u*r-i*l)*p,t[5]=(-s*r+i*a)*p,t[6]=d*p,t[7]=(-c*r+n*l)*p,t[8]=(o*r-n*a)*p,t):null}},{}],180:[function(t,e,r){e.exports=function(t){var e=new Float32Array(16);return e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],e[4]=t[4],e[5]=t[5],e[6]=t[6],e[7]=t[7],e[8]=t[8],e[9]=t[9],e[10]=t[10],e[11]=t[11],e[12]=t[12],e[13]=t[13],e[14]=t[14],e[15]=t[15],e}},{}],181:[function(t,e,r){e.exports=function(){var t=new Float32Array(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],182:[function(t,e,r){e.exports=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)}},{}],183:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],184:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t}},{}],185:[function(t,e,r){e.exports=function(t){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],186:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t}},{}],187:[function(t,e,r){var n=t("./identity");e.exports=function(t,e,r,i){var a,o,s,l,c,u,f,h,d,p,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<1e-6&&Math.abs(v-w)<1e-6&&Math.abs(g-M)<1e-6)return n(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t}},{"./identity":185}],188:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=e[6],u=e[7],f=e[8],h=e[9],d=e[10],p=e[11],m=e[12],v=e[13],g=e[14],y=e[15],b=r[0],x=r[1],_=r[2],w=r[3];return t[0]=b*n+x*s+_*f+w*m,t[1]=b*i+x*l+_*h+w*v,t[2]=b*a+x*c+_*d+w*g,t[3]=b*o+x*u+_*p+w*y,b=r[4],x=r[5],_=r[6],w=r[7],t[4]=b*n+x*s+_*f+w*m,t[5]=b*i+x*l+_*h+w*v,t[6]=b*a+x*c+_*d+w*g,t[7]=b*o+x*u+_*p+w*y,b=r[8],x=r[9],_=r[10],w=r[11],t[8]=b*n+x*s+_*f+w*m,t[9]=b*i+x*l+_*h+w*v,t[10]=b*a+x*c+_*d+w*g,t[11]=b*o+x*u+_*p+w*y,b=r[12],x=r[13],_=r[14],w=r[15],t[12]=b*n+x*s+_*f+w*m,t[13]=b*i+x*l+_*h+w*v,t[14]=b*a+x*c+_*d+w*g,t[15]=b*o+x*u+_*p+w*y,t}},{}],189:[function(t,e,r){e.exports=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t}},{}],190:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w,M,k,A,T,E,S=n[0],L=n[1],C=n[2],P=Math.sqrt(S*S+L*L+C*C);if(Math.abs(P)<1e-6)return null;S*=P=1/P,L*=P,C*=P,i=Math.sin(r),a=Math.cos(r),o=1-a,s=e[0],l=e[1],c=e[2],u=e[3],f=e[4],h=e[5],d=e[6],p=e[7],m=e[8],v=e[9],g=e[10],y=e[11],b=S*S*o+a,x=L*S*o+C*i,_=C*S*o-L*i,w=S*L*o-C*i,M=L*L*o+a,k=C*L*o+S*i,A=S*C*o+L*i,T=L*C*o-S*i,E=C*C*o+a,t[0]=s*b+f*x+m*_,t[1]=l*b+h*x+v*_,t[2]=c*b+d*x+g*_,t[3]=u*b+p*x+y*_,t[4]=s*w+f*M+m*k,t[5]=l*w+h*M+v*k,t[6]=c*w+d*M+g*k,t[7]=u*w+p*M+y*k,t[8]=s*A+f*T+m*E,t[9]=l*A+h*T+v*E,t[10]=c*A+d*T+g*E,t[11]=u*A+p*T+y*E,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t}},{}],191:[function(t,e,r){e.exports=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t}},{}],192:[function(t,e,r){e.exports=function(t,e,r){var 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n=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var r in t)Object.prototype.hasOwnProperty.call(t,r)&&(e[r]=t[r]);return e.default=t,e}(r(0));function i(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=r[0],u=r[1],f=r[2],h=r[3],d=r[4],p=r[5];return t[0]=n*c+a*u,t[1]=i*c+o*u,t[2]=n*f+a*h,t[3]=i*f+o*h,t[4]=n*d+a*p+s,t[5]=i*d+o*p+l,t}function a(t,e,r){return t[0]=e[0]-r[0],t[1]=e[1]-r[1],t[2]=e[2]-r[2],t[3]=e[3]-r[3],t[4]=e[4]-r[4],t[5]=e[5]-r[5],t}e.mul=i,e.sub=a},function(t,e,r){"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.sub=e.mul=void 0,e.create=function(){var t=new n.ARRAY_TYPE(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.clone=function(t){var e=new n.ARRAY_TYPE(16);return 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r=e[1],n=e[2],i=e[3],a=e[6],o=e[7],s=e[11];t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=r,t[6]=e[9],t[7]=e[13],t[8]=n,t[9]=a,t[11]=e[14],t[12]=i,t[13]=o,t[14]=s}else t[0]=e[0],t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=e[1],t[5]=e[5],t[6]=e[9],t[7]=e[13],t[8]=e[2],t[9]=e[6],t[10]=e[10],t[11]=e[14],t[12]=e[3],t[13]=e[7],t[14]=e[11],t[15]=e[15];return t},e.invert=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t},e.adjoint=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15];return t[0]=s*(h*g-d*v)-f*(l*g-c*v)+m*(l*d-c*h),t[1]=-(n*(h*g-d*v)-f*(i*g-a*v)+m*(i*d-a*h)),t[2]=n*(l*g-c*v)-s*(i*g-a*v)+m*(i*c-a*l),t[3]=-(n*(l*d-c*h)-s*(i*d-a*h)+f*(i*c-a*l)),t[4]=-(o*(h*g-d*v)-u*(l*g-c*v)+p*(l*d-c*h)),t[5]=r*(h*g-d*v)-u*(i*g-a*v)+p*(i*d-a*h),t[6]=-(r*(l*g-c*v)-o*(i*g-a*v)+p*(i*c-a*l)),t[7]=r*(l*d-c*h)-o*(i*d-a*h)+u*(i*c-a*l),t[8]=o*(f*g-d*m)-u*(s*g-c*m)+p*(s*d-c*f),t[9]=-(r*(f*g-d*m)-u*(n*g-a*m)+p*(n*d-a*f)),t[10]=r*(s*g-c*m)-o*(n*g-a*m)+p*(n*c-a*s),t[11]=-(r*(s*d-c*f)-o*(n*d-a*f)+u*(n*c-a*s)),t[12]=-(o*(f*v-h*m)-u*(s*v-l*m)+p*(s*h-l*f)),t[13]=r*(f*v-h*m)-u*(n*v-i*m)+p*(n*h-i*f),t[14]=-(r*(s*v-l*m)-o*(n*v-i*m)+p*(n*l-i*s)),t[15]=r*(s*h-l*f)-o*(n*h-i*f)+u*(n*l-i*s),t},e.determinant=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)},e.multiply=i,e.translate=function(t,e,r){var n=r[0],i=r[1],a=r[2],o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0;e===t?(t[12]=e[0]*n+e[4]*i+e[8]*a+e[12],t[13]=e[1]*n+e[5]*i+e[9]*a+e[13],t[14]=e[2]*n+e[6]*i+e[10]*a+e[14],t[15]=e[3]*n+e[7]*i+e[11]*a+e[15]):(o=e[0],s=e[1],l=e[2],c=e[3],u=e[4],f=e[5],h=e[6],d=e[7],p=e[8],m=e[9],v=e[10],g=e[11],t[0]=o,t[1]=s,t[2]=l,t[3]=c,t[4]=u,t[5]=f,t[6]=h,t[7]=d,t[8]=p,t[9]=m,t[10]=v,t[11]=g,t[12]=o*n+u*i+p*a+e[12],t[13]=s*n+f*i+m*a+e[13],t[14]=l*n+h*i+v*a+e[14],t[15]=c*n+d*i+g*a+e[15]);return t},e.scale=function(t,e,r){var n=r[0],i=r[1],a=r[2];return t[0]=e[0]*n,t[1]=e[1]*n,t[2]=e[2]*n,t[3]=e[3]*n,t[4]=e[4]*i,t[5]=e[5]*i,t[6]=e[6]*i,t[7]=e[7]*i,t[8]=e[8]*a,t[9]=e[9]*a,t[10]=e[10]*a,t[11]=e[11]*a,t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15],t},e.rotate=function(t,e,r,i){var a=i[0],o=i[1],s=i[2],l=Math.sqrt(a*a+o*o+s*s),c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0,y=void 0,b=void 0,x=void 0,_=void 0,w=void 0,M=void 0,k=void 0,A=void 0,T=void 0,E=void 0,S=void 0,L=void 0,C=void 0,P=void 0,z=void 0;if(Math.abs(l)<n.EPSILON)return null;a*=l=1/l,o*=l,s*=l,c=Math.sin(r),u=Math.cos(r),f=1-u,h=e[0],d=e[1],p=e[2],m=e[3],v=e[4],g=e[5],y=e[6],b=e[7],x=e[8],_=e[9],w=e[10],M=e[11],k=a*a*f+u,A=o*a*f+s*c,T=s*a*f-o*c,E=a*o*f-s*c,S=o*o*f+u,L=s*o*f+a*c,C=a*s*f+o*c,P=o*s*f-a*c,z=s*s*f+u,t[0]=h*k+v*A+x*T,t[1]=d*k+g*A+_*T,t[2]=p*k+y*A+w*T,t[3]=m*k+b*A+M*T,t[4]=h*E+v*S+x*L,t[5]=d*E+g*S+_*L,t[6]=p*E+y*S+w*L,t[7]=m*E+b*S+M*L,t[8]=h*C+v*P+x*z,t[9]=d*C+g*P+_*z,t[10]=p*C+y*P+w*z,t[11]=m*C+b*P+M*z,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t},e.rotateX=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t},e.rotateY=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[4]=e[4],t[5]=e[5],t[6]=e[6],t[7]=e[7],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i-c*n,t[1]=o*i-u*n,t[2]=s*i-f*n,t[3]=l*i-h*n,t[8]=a*n+c*i,t[9]=o*n+u*i,t[10]=s*n+f*i,t[11]=l*n+h*i,t},e.rotateZ=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[4],u=e[5],f=e[6],h=e[7];e!==t&&(t[8]=e[8],t[9]=e[9],t[10]=e[10],t[11]=e[11],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i+c*n,t[1]=o*i+u*n,t[2]=s*i+f*n,t[3]=l*i+h*n,t[4]=c*i-a*n,t[5]=u*i-o*n,t[6]=f*i-s*n,t[7]=h*i-l*n,t},e.fromTranslation=function(t,e){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=e[0],t[13]=e[1],t[14]=e[2],t[15]=1,t},e.fromScaling=function(t,e){return t[0]=e[0],t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=e[1],t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=e[2],t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotation=function(t,e,r){var i=r[0],a=r[1],o=r[2],s=Math.sqrt(i*i+a*a+o*o),l=void 0,c=void 0,u=void 0;if(Math.abs(s)<n.EPSILON)return null;return i*=s=1/s,a*=s,o*=s,l=Math.sin(e),c=Math.cos(e),u=1-c,t[0]=i*i*u+c,t[1]=a*i*u+o*l,t[2]=o*i*u-a*l,t[3]=0,t[4]=i*a*u-o*l,t[5]=a*a*u+c,t[6]=o*a*u+i*l,t[7]=0,t[8]=i*o*u+a*l,t[9]=a*o*u-i*l,t[10]=o*o*u+c,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromXRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=n,t[6]=r,t[7]=0,t[8]=0,t[9]=-r,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromYRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=0,t[2]=-r,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=r,t[9]=0,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromZRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=r,t[2]=0,t[3]=0,t[4]=-r,t[5]=n,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotationTranslation=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.getTranslation=function(t,e){return t[0]=e[12],t[1]=e[13],t[2]=e[14],t},e.getScaling=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[4],o=e[5],s=e[6],l=e[8],c=e[9],u=e[10];return t[0]=Math.sqrt(r*r+n*n+i*i),t[1]=Math.sqrt(a*a+o*o+s*s),t[2]=Math.sqrt(l*l+c*c+u*u),t},e.getRotation=function(t,e){var r=e[0]+e[5]+e[10],n=0;r>0?(n=2*Math.sqrt(r+1),t[3]=.25*n,t[0]=(e[6]-e[9])/n,t[1]=(e[8]-e[2])/n,t[2]=(e[1]-e[4])/n):e[0]>e[5]&e[0]>e[10]?(n=2*Math.sqrt(1+e[0]-e[5]-e[10]),t[3]=(e[6]-e[9])/n,t[0]=.25*n,t[1]=(e[1]+e[4])/n,t[2]=(e[8]+e[2])/n):e[5]>e[10]?(n=2*Math.sqrt(1+e[5]-e[0]-e[10]),t[3]=(e[8]-e[2])/n,t[0]=(e[1]+e[4])/n,t[1]=.25*n,t[2]=(e[6]+e[9])/n):(n=2*Math.sqrt(1+e[10]-e[0]-e[5]),t[3]=(e[1]-e[4])/n,t[0]=(e[8]+e[2])/n,t[1]=(e[6]+e[9])/n,t[2]=.25*n);return t},e.fromRotationTranslationScale=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=e[3],l=i+i,c=a+a,u=o+o,f=i*l,h=i*c,d=i*u,p=a*c,m=a*u,v=o*u,g=s*l,y=s*c,b=s*u,x=n[0],_=n[1],w=n[2];return t[0]=(1-(p+v))*x,t[1]=(h+b)*x,t[2]=(d-y)*x,t[3]=0,t[4]=(h-b)*_,t[5]=(1-(f+v))*_,t[6]=(m+g)*_,t[7]=0,t[8]=(d+y)*w,t[9]=(m-g)*w,t[10]=(1-(f+p))*w,t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.fromRotationTranslationScaleOrigin=function(t,e,r,n,i){var a=e[0],o=e[1],s=e[2],l=e[3],c=a+a,u=o+o,f=s+s,h=a*c,d=a*u,p=a*f,m=o*u,v=o*f,g=s*f,y=l*c,b=l*u,x=l*f,_=n[0],w=n[1],M=n[2],k=i[0],A=i[1],T=i[2];return t[0]=(1-(m+g))*_,t[1]=(d+x)*_,t[2]=(p-b)*_,t[3]=0,t[4]=(d-x)*w,t[5]=(1-(h+g))*w,t[6]=(v+y)*w,t[7]=0,t[8]=(p+b)*M,t[9]=(v-y)*M,t[10]=(1-(h+m))*M,t[11]=0,t[12]=r[0]+k-(t[0]*k+t[4]*A+t[8]*T),t[13]=r[1]+A-(t[1]*k+t[5]*A+t[9]*T),t[14]=r[2]+T-(t[2]*k+t[6]*A+t[10]*T),t[15]=1,t},e.fromQuat=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.frustum=function(t,e,r,n,i,a,o){var s=1/(r-e),l=1/(i-n),c=1/(a-o);return t[0]=2*a*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=2*a*l,t[6]=0,t[7]=0,t[8]=(r+e)*s,t[9]=(i+n)*l,t[10]=(o+a)*c,t[11]=-1,t[12]=0,t[13]=0,t[14]=o*a*2*c,t[15]=0,t},e.perspective=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t},e.perspectiveFromFieldOfView=function(t,e,r,n){var i=Math.tan(e.upDegrees*Math.PI/180),a=Math.tan(e.downDegrees*Math.PI/180),o=Math.tan(e.leftDegrees*Math.PI/180),s=Math.tan(e.rightDegrees*Math.PI/180),l=2/(o+s),c=2/(i+a);return t[0]=l,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=c,t[6]=0,t[7]=0,t[8]=-(o-s)*l*.5,t[9]=(i-a)*c*.5,t[10]=n/(r-n),t[11]=-1,t[12]=0,t[13]=0,t[14]=n*r/(r-n),t[15]=0,t},e.ortho=function(t,e,r,n,i,a,o){var s=1/(e-r),l=1/(n-i),c=1/(a-o);return t[0]=-2*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=-2*l,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=2*c,t[11]=0,t[12]=(e+r)*s,t[13]=(i+n)*l,t[14]=(o+a)*c,t[15]=1,t},e.lookAt=function(t,e,r,i){var a=void 0,o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<n.EPSILON&&Math.abs(v-w)<n.EPSILON&&Math.abs(g-M)<n.EPSILON)return mat4.identity(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t},e.targetTo=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=n[0],l=n[1],c=n[2],u=i-r[0],f=a-r[1],h=o-r[2],d=u*u+f*f+h*h;d>0&&(d=1/Math.sqrt(d),u*=d,f*=d,h*=d);var p=l*h-c*f,m=c*u-s*h,v=s*f-l*u;return t[0]=p,t[1]=m,t[2]=v,t[3]=0,t[4]=f*v-h*m,t[5]=h*p-u*v,t[6]=u*m-f*p,t[7]=0,t[8]=u,t[9]=f,t[10]=h,t[11]=0,t[12]=i,t[13]=a,t[14]=o,t[15]=1,t},e.str=function(t){return"mat4("+t[0]+", "+t[1]+", "+t[2]+", "+t[3]+", "+t[4]+", "+t[5]+", "+t[6]+", "+t[7]+", "+t[8]+", "+t[9]+", "+t[10]+", "+t[11]+", "+t[12]+", "+t[13]+", "+t[14]+", "+t[15]+")"},e.frob=function(t){return Math.sqrt(Math.pow(t[0],2)+Math.pow(t[1],2)+Math.pow(t[2],2)+Math.pow(t[3],2)+Math.pow(t[4],2)+Math.pow(t[5],2)+Math.pow(t[6],2)+Math.pow(t[7],2)+Math.pow(t[8],2)+Math.pow(t[9],2)+Math.pow(t[10],2)+Math.pow(t[11],2)+Math.pow(t[12],2)+Math.pow(t[13],2)+Math.pow(t[14],2)+Math.pow(t[15],2))},e.add=function(t,e,r){return t[0]=e[0]+r[0],t[1]=e[1]+r[1],t[2]=e[2]+r[2],t[3]=e[3]+r[3],t[4]=e[4]+r[4],t[5]=e[5]+r[5],t[6]=e[6]+r[6],t[7]=e[7]+r[7],t[8]=e[8]+r[8],t[9]=e[9]+r[9],t[10]=e[10]+r[10],t[11]=e[11]+r[11],t[12]=e[12]+r[12],t[13]=e[13]+r[13],t[14]=e[14]+r[14],t[15]=e[15]+r[15],t},e.subtract=a,e.multiplyScalar=function(t,e,r){return t[0]=e[0]*r,t[1]=e[1]*r,t[2]=e[2]*r,t[3]=e[3]*r,t[4]=e[4]*r,t[5]=e[5]*r,t[6]=e[6]*r,t[7]=e[7]*r,t[8]=e[8]*r,t[9]=e[9]*r,t[10]=e[10]*r,t[11]=e[11]*r,t[12]=e[12]*r,t[13]=e[13]*r,t[14]=e[14]*r,t[15]=e[15]*r,t},e.multiplyScalarAndAdd=function(t,e,r,n){return t[0]=e[0]+r[0]*n,t[1]=e[1]+r[1]*n,t[2]=e[2]+r[2]*n,t[3]=e[3]+r[3]*n,t[4]=e[4]+r[4]*n,t[5]=e[5]+r[5]*n,t[6]=e[6]+r[6]*n,t[7]=e[7]+r[7]*n,t[8]=e[8]+r[8]*n,t[9]=e[9]+r[9]*n,t[10]=e[10]+r[10]*n,t[11]=e[11]+r[11]*n,t[12]=e[12]+r[12]*n,t[13]=e[13]+r[13]*n,t[14]=e[14]+r[14]*n,t[15]=e[15]+r[15]*n,t},e.exactEquals=function(t,e){return t[0]===e[0]&&t[1]===e[1]&&t[2]===e[2]&&t[3]===e[3]&&t[4]===e[4]&&t[5]===e[5]&&t[6]===e[6]&&t[7]===e[7]&&t[8]===e[8]&&t[9]===e[9]&&t[10]===e[10]&&t[11]===e[11]&&t[12]===e[12]&&t[13]===e[13]&&t[14]===e[14]&&t[15]===e[15]},e.equals=function(t,e){var r=t[0],i=t[1],a=t[2],o=t[3],s=t[4],l=t[5],c=t[6],u=t[7],f=t[8],h=t[9],d=t[10],p=t[11],m=t[12],v=t[13],g=t[14],y=t[15],b=e[0],x=e[1],_=e[2],w=e[3],M=e[4],k=e[5],A=e[6],T=e[7],E=e[8],S=e[9],L=e[10],C=e[11],P=e[12],z=e[13],O=e[14],D=e[15];return Math.abs(r-b)<=n.EPSILON*Math.max(1,Math.abs(r),Math.abs(b))&&Math.abs(i-x)<=n.EPSILON*Math.max(1,Math.abs(i),Math.abs(x))&&Math.abs(a-_)<=n.EPSILON*Math.max(1,Math.abs(a),Math.abs(_))&&Math.abs(o-w)<=n.EPSILON*Math.max(1,Math.abs(o),Math.abs(w))&&Math.abs(s-M)<=n.EPSILON*Math.max(1,Math.abs(s),Math.abs(M))&&Math.abs(l-k)<=n.EPSILON*Math.max(1,Math.abs(l),Math.abs(k))&&Math.abs(c-A)<=n.EPSILON*Math.max(1,Math.abs(c),Math.abs(A))&&Math.abs(u-T)<=n.EPSILON*Math.max(1,Math.abs(u),Math.abs(T))&&Math.abs(f-E)<=n.EPSILON*Math.max(1,Math.abs(f),Math.abs(E))&&Math.abs(h-S)<=n.EPSILON*Math.max(1,Math.abs(h),Math.abs(S))&&Math.abs(d-L)<=n.EPSILON*Math.max(1,Math.abs(d),Math.abs(L))&&Math.abs(p-C)<=n.EPSILON*Math.max(1,Math.abs(p),Math.abs(C))&&Math.abs(m-P)<=n.EPSILON*Math.max(1,Math.abs(m),Math.abs(P))&&Math.abs(v-z)<=n.EPSILON*Math.max(1,Math.abs(v),Math.abs(z))&&Math.abs(g-O)<=n.EPSILON*Math.max(1,Math.abs(g),Math.abs(O))&&Math.abs(y-D)<=n.EPSILON*Math.max(1,Math.abs(y),Math.abs(D))};var 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f_normal\n           , f_lightDirection\n           , f_eyeDirection\n           , f_data;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(f_normal);\n  vec3 L = normalize(f_lightDirection);\n  vec3 V = normalize(f_eyeDirection);\n  \n  if(!gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = cookTorranceSpecular(L, V, N, roughness, fresnel);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  vec4 surfaceColor = f_color * texture2D(texture, f_uv);\n  vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular,  1.0);\n\n  gl_FragColor = litColor * opacity;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\n\nuniform mat4 model, view, projection;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_color = color;\n  f_data  = position;\n  f_uv    = uv;\n}"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 clipBounds[2];\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\nattribute float pointSize;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position = projection * view * model * vec4(position, 1.0);\n  }\n  gl_PointSize = pointSize;\n  f_color = color;\n  f_uv = uv;\n}"]),c=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  vec2 pointR = gl_PointCoord.xy - vec2(0.5,0.5);\n  if(dot(pointR, pointR) > 0.25) {\n    discard;\n  }\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_id        = id;\n  f_position  = position;\n}"]),f=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3  clipBounds[2];\nuniform float pickId;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(f_position, clipBounds[0])) || \n     any(greaterThan(f_position, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId, f_id.xyz);\n}"]),h=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3  position;\nattribute float pointSize;\nattribute vec4  id;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position  = projection * view * model * vec4(position, 1.0);\n    gl_PointSize = pointSize;\n  }\n  f_id         = id;\n  f_position   = position;\n}"]),d=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n}"]),p=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 contourColor;\n\nvoid main() {\n  gl_FragColor = vec4(contourColor,1);\n}\n"]);r.meshShader={vertex:i,fragment:a,attributes:[{name:"position",type:"vec3"},{name:"normal",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.wireShader={vertex:o,fragment:s,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.pointShader={vertex:l,fragment:c,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"},{name:"pointSize",type:"float"}]},r.pickShader={vertex:u,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"id",type:"vec4"}]},r.pointPickShader={vertex:h,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"pointSize",type:"float"},{name:"id",type:"vec4"}]},r.contourShader={vertex:d,fragment:p,attributes:[{name:"position",type:"vec3"}]}},{glslify:253}],201:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("normals"),l=t("gl-mat4/multiply"),c=t("gl-mat4/invert"),u=t("ndarray"),f=t("colormap"),h=t("simplicial-complex-contour"),d=t("typedarray-pool"),p=t("./lib/shaders"),m=t("./lib/closest-point"),v=p.meshShader,g=p.wireShader,y=p.pointShader,b=p.pickShader,x=p.pointPickShader,_=p.contourShader,w=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function M(t,e,r,n,i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,M,k,A,T,E){this.gl=t,this.cells=[],this.positions=[],this.intensity=[],this.texture=e,this.dirty=!0,this.triShader=r,this.lineShader=n,this.pointShader=i,this.pickShader=a,this.pointPickShader=o,this.contourShader=s,this.trianglePositions=l,this.triangleColors=u,this.triangleNormals=h,this.triangleUVs=f,this.triangleIds=c,this.triangleVAO=d,this.triangleCount=0,this.lineWidth=1,this.edgePositions=p,this.edgeColors=v,this.edgeUVs=g,this.edgeIds=m,this.edgeVAO=y,this.edgeCount=0,this.pointPositions=b,this.pointColors=_,this.pointUVs=M,this.pointSizes=k,this.pointIds=x,this.pointVAO=A,this.pointCount=0,this.contourLineWidth=1,this.contourPositions=T,this.contourVAO=E,this.contourCount=0,this.contourColor=[0,0,0],this.contourEnable=!0,this.pickId=1,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.lightPosition=[1e5,1e5,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.opacity=1,this._model=w,this._view=w,this._projection=w,this._resolution=[1,1]}var k=M.prototype;function A(t){var e=n(t,y.vertex,y.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.pointSize.location=4,e}function T(t){var e=n(t,b.vertex,b.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e}function E(t){var e=n(t,x.vertex,x.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e.attributes.pointSize.location=4,e}function S(t){var e=n(t,_.vertex,_.fragment);return e.attributes.position.location=0,e}k.isOpaque=function(){return this.opacity>=1},k.isTransparent=function(){return this.opacity<1},k.pickSlots=1,k.setPickBase=function(t){this.pickId=t},k.highlight=function(t){if(t&&this.contourEnable){for(var e=h(this.cells,this.intensity,t.intensity),r=e.cells,n=e.vertexIds,i=e.vertexWeights,a=r.length,o=d.mallocFloat32(6*a),s=0,l=0;l<a;++l)for(var c=r[l],u=0;u<2;++u){var f=c[0];2===c.length&&(f=c[u]);for(var p=n[f][0],m=n[f][1],v=i[f],g=1-v,y=this.positions[p],b=this.positions[m],x=0;x<3;++x)o[s++]=v*y[x]+g*b[x]}this.contourCount=s/3|0,this.contourPositions.update(o.subarray(0,s)),d.free(o)}else this.contourCount=0},k.update=function(t){t=t||{};var e=this.gl;this.dirty=!0,"contourEnable"in t&&(this.contourEnable=t.contourEnable),"contourColor"in t&&(this.contourColor=t.contourColor),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"lightPosition"in t&&(this.lightPosition=t.lightPosition),"opacity"in t&&(this.opacity=t.opacity),"ambient"in t&&(this.ambientLight=t.ambient),"diffuse"in t&&(this.diffuseLight=t.diffuse),"specular"in t&&(this.specularLight=t.specular),"roughness"in t&&(this.roughness=t.roughness),"fresnel"in t&&(this.fresnel=t.fresnel),t.texture?(this.texture.dispose(),this.texture=o(e,t.texture)):t.colormap&&(this.texture.shape=[256,256],this.texture.minFilter=e.LINEAR_MIPMAP_LINEAR,this.texture.magFilter=e.LINEAR,this.texture.setPixels(function(t){for(var e=f({colormap:t,nshades:256,format:"rgba"}),r=new Uint8Array(1024),n=0;n<256;++n){for(var i=e[n],a=0;a<3;++a)r[4*n+a]=i[a];r[4*n+3]=255*i[3]}return u(r,[256,256,4],[4,0,1])}(t.colormap)),this.texture.generateMipmap());var r=t.cells,n=t.positions;if(n&&r){var i=[],a=[],l=[],c=[],h=[],d=[],p=[],m=[],v=[],g=[],y=[],b=[],x=[],_=[];this.cells=r,this.positions=n;var w=t.vertexNormals,M=t.cellNormals,k=void 0===t.vertexNormalsEpsilon?1e-6:t.vertexNormalsEpsilon,A=void 0===t.faceNormalsEpsilon?1e-6:t.faceNormalsEpsilon;t.useFacetNormals&&!M&&(M=s.faceNormals(r,n,A)),M||w||(w=s.vertexNormals(r,n,k));var T=t.vertexColors,E=t.cellColors,S=t.meshColor||[1,1,1,1],L=t.vertexUVs,C=t.vertexIntensity,P=t.cellUVs,z=t.cellIntensity,O=1/0,D=-1/0;if(!L&&!P)if(C)if(t.vertexIntensityBounds)O=+t.vertexIntensityBounds[0],D=+t.vertexIntensityBounds[1];else for(var I=0;I<C.length;++I){var R=C[I];O=Math.min(O,R),D=Math.max(D,R)}else if(z)for(I=0;I<z.length;++I){R=z[I];O=Math.min(O,R),D=Math.max(D,R)}else for(I=0;I<n.length;++I){R=n[I][2];O=Math.min(O,R),D=Math.max(D,R)}this.intensity=C||(z?function(t,e,r){for(var n=new Array(e),i=0;i<e;++i)n[i]=0;var a=t.length;for(i=0;i<a;++i)for(var o=t[i],s=0;s<o.length;++s)n[o[s]]=r[i];return n}(r,n.length,z):function(t){for(var e=t.length,r=new Array(e),n=0;n<e;++n)r[n]=t[n][2];return r}(n));var N=t.pointSizes,F=t.pointSize||1;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(I=0;I<n.length;++I)for(var j=n[I],B=0;B<3;++B)!isNaN(j[B])&&isFinite(j[B])&&(this.bounds[0][B]=Math.min(this.bounds[0][B],j[B]),this.bounds[1][B]=Math.max(this.bounds[1][B],j[B]));var U=0,V=0,q=0;t:for(I=0;I<r.length;++I){var H=r[I];switch(H.length){case 1:for(j=n[Y=H[0]],B=0;B<3;++B)if(isNaN(j[B])||!isFinite(j[B]))continue t;g.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?y.push(W[0],W[1],W[2],1):y.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],b.push(X[0],X[1]),N?x.push(N[Y]):x.push(F),_.push(I),q+=1;break;case 2:for(B=0;B<2;++B){j=n[Y=H[B]];for(var G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t}for(B=0;B<2;++B){j=n[Y=H[B]];d.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?p.push(W[0],W[1],W[2],1):p.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],m.push(X[0],X[1]),v.push(I)}V+=1;break;case 3:for(B=0;B<3;++B)for(j=n[Y=H[B]],G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t;for(B=0;B<3;++B){var Y,W,X,Z;j=n[Y=H[B]];i.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?a.push(W[0],W[1],W[2],1):a.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],c.push(X[0],X[1]),Z=w?w[Y]:M[I],l.push(Z[0],Z[1],Z[2]),h.push(I)}U+=1}}this.pointCount=q,this.edgeCount=V,this.triangleCount=U,this.pointPositions.update(g),this.pointColors.update(y),this.pointUVs.update(b),this.pointSizes.update(x),this.pointIds.update(new Uint32Array(_)),this.edgePositions.update(d),this.edgeColors.update(p),this.edgeUVs.update(m),this.edgeIds.update(new Uint32Array(v)),this.trianglePositions.update(i),this.triangleColors.update(a),this.triangleUVs.update(c),this.triangleNormals.update(l),this.triangleIds.update(new Uint32Array(h))}},k.drawTransparent=k.draw=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);var s={model:r,view:n,projection:i,clipBounds:a,kambient:this.ambientLight,kdiffuse:this.diffuseLight,kspecular:this.specularLight,roughness:this.roughness,fresnel:this.fresnel,eyePosition:[0,0,0],lightPosition:[0,0,0],opacity:this.opacity,contourColor:this.contourColor,texture:0};this.texture.bind(0);var u=new Array(16);l(u,s.view,s.model),l(u,s.projection,u),c(u,u);for(o=0;o<3;++o)s.eyePosition[o]=u[12+o]/u[15];var f,h=u[15];for(o=0;o<3;++o)h+=this.lightPosition[o]*u[4*o+3];for(o=0;o<3;++o){for(var d=u[12+o],p=0;p<3;++p)d+=u[4*p+o]*this.lightPosition[p];s.lightPosition[o]=d/h}this.triangleCount>0&&((f=this.triShader).bind(),f.uniforms=s,this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind());this.edgeCount>0&&this.lineWidth>0&&((f=this.lineShader).bind(),f.uniforms=s,this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind());this.pointCount>0&&((f=this.pointShader).bind(),f.uniforms=s,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind());this.contourEnable&&this.contourCount>0&&this.contourLineWidth>0&&((f=this.contourShader).bind(),f.uniforms=s,this.contourVAO.bind(),e.drawArrays(e.LINES,0,this.contourCount),this.contourVAO.unbind())},k.drawPick=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);this._model=[].slice.call(r),this._view=[].slice.call(n),this._projection=[].slice.call(i),this._resolution=[e.drawingBufferWidth,e.drawingBufferHeight];var s,l={model:r,view:n,projection:i,clipBounds:a,pickId:this.pickId/255};((s=this.pickShader).bind(),s.uniforms=l,this.triangleCount>0&&(this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()),this.edgeCount>0&&(this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind()),this.pointCount>0)&&((s=this.pointPickShader).bind(),s.uniforms=l,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind())},k.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;for(var e=t.value[0]+256*t.value[1]+65536*t.value[2],r=this.cells[e],n=this.positions,i=new Array(r.length),a=0;a<r.length;++a)i[a]=n[r[a]];var o=m(i,[t.coord[0],this._resolution[1]-t.coord[1]],this._model,this._view,this._projection,this._resolution);if(!o)return null;var s=o[2],l=0;for(a=0;a<r.length;++a)l+=s[a]*this.intensity[r[a]];return{position:o[1],index:r[o[0]],cell:r,cellId:e,intensity:l,dataCoordinate:this.positions[r[o[0]]]}},k.dispose=function(){this.texture.dispose(),this.triShader.dispose(),this.lineShader.dispose(),this.pointShader.dispose(),this.pickShader.dispose(),this.pointPickShader.dispose(),this.triangleVAO.dispose(),this.trianglePositions.dispose(),this.triangleColors.dispose(),this.triangleUVs.dispose(),this.triangleNormals.dispose(),this.triangleIds.dispose(),this.edgeVAO.dispose(),this.edgePositions.dispose(),this.edgeColors.dispose(),this.edgeUVs.dispose(),this.edgeIds.dispose(),this.pointVAO.dispose(),this.pointPositions.dispose(),this.pointColors.dispose(),this.pointUVs.dispose(),this.pointSizes.dispose(),this.pointIds.dispose(),this.contourVAO.dispose(),this.contourPositions.dispose(),this.contourShader.dispose()},e.exports=function(t,e){1===arguments.length&&(t=(e=t).gl);var r=function(t){var e=n(t,v.vertex,v.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.normal.location=4,e}(t),s=function(t){var e=n(t,g.vertex,g.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e}(t),l=A(t),c=T(t),f=E(t),h=S(t),d=o(t,u(new Uint8Array([255,255,255,255]),[1,1,4]));d.generateMipmap(),d.minFilter=t.LINEAR_MIPMAP_LINEAR,d.magFilter=t.LINEAR;var p=i(t),m=i(t),y=i(t),b=i(t),x=i(t),_=a(t,[{buffer:p,type:t.FLOAT,size:3},{buffer:x,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:m,type:t.FLOAT,size:4},{buffer:y,type:t.FLOAT,size:2},{buffer:b,type:t.FLOAT,size:3}]),w=i(t),k=i(t),L=i(t),C=i(t),P=a(t,[{buffer:w,type:t.FLOAT,size:3},{buffer:C,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:k,type:t.FLOAT,size:4},{buffer:L,type:t.FLOAT,size:2}]),z=i(t),O=i(t),D=i(t),I=i(t),R=i(t),N=a(t,[{buffer:z,type:t.FLOAT,size:3},{buffer:R,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:O,type:t.FLOAT,size:4},{buffer:D,type:t.FLOAT,size:2},{buffer:I,type:t.FLOAT,size:1}]),F=i(t),j=new M(t,d,r,s,l,c,f,h,p,x,m,y,b,_,w,C,k,L,P,z,R,O,D,I,N,F,a(t,[{buffer:F,type:t.FLOAT,size:3}]));return j.update(e),j}},{"./lib/closest-point":199,"./lib/shaders":200,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-shader":220,"gl-texture2d":233,"gl-vao":237,ndarray:439,normals:442,"simplicial-complex-contour":504,"typedarray-pool":534}],202:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[0,0,0,1,1,0,1,1]),s=i(e,a.boxVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawBox=(s=[0,0],l=[0,0],function(t,e,r,n,i){var a=this.plot,o=this.shader,c=a.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,o.uniforms.lo=s,o.uniforms.hi=l,o.uniforms.color=i,c.drawArrays(c.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],203:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,o.gridVert,o.gridFrag),l=i(e,o.tickVert,o.gridFrag);return new s(t,r,a,l)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("binary-search-bounds"),o=t("./shaders");function s(t,e,r,n){this.plot=t,this.vbo=e,this.shader=r,this.tickShader=n,this.ticks=[[],[]]}function l(t,e){return t-e}var c,u,f,h,d,p=s.prototype;p.draw=(c=[0,0],u=[0,0],f=[0,0],function(){for(var t=this.plot,e=this.vbo,r=this.shader,n=this.ticks,i=t.gl,a=t._tickBounds,o=t.dataBox,s=t.viewBox,l=t.gridLineWidth,h=t.gridLineColor,d=t.gridLineEnable,p=t.pixelRatio,m=0;m<2;++m){var v=a[m],g=a[m+2]-v,y=.5*(o[m+2]+o[m]),b=o[m+2]-o[m];u[m]=2*g/b,c[m]=2*(v-y)/b}r.bind(),e.bind(),r.attributes.dataCoord.pointer(),r.uniforms.dataShift=c,r.uniforms.dataScale=u;var x=0;for(m=0;m<2;++m){f[0]=f[1]=0,f[m]=1,r.uniforms.dataAxis=f,r.uniforms.lineWidth=l[m]/(s[m+2]-s[m])*p,r.uniforms.color=h[m];var _=6*n[m].length;d[m]&&_&&i.drawArrays(i.TRIANGLES,x,_),x+=_}}),p.drawTickMarks=function(){var t=[0,0],e=[0,0],r=[1,0],n=[0,1],i=[0,0],o=[0,0];return function(){for(var s=this.plot,c=this.vbo,u=this.tickShader,f=this.ticks,h=s.gl,d=s._tickBounds,p=s.dataBox,m=s.viewBox,v=s.pixelRatio,g=s.screenBox,y=g[2]-g[0],b=g[3]-g[1],x=m[2]-m[0],_=m[3]-m[1],w=0;w<2;++w){var M=d[w],k=d[w+2]-M,A=.5*(p[w+2]+p[w]),T=p[w+2]-p[w];e[w]=2*k/T,t[w]=2*(M-A)/T}e[0]*=x/y,t[0]*=x/y,e[1]*=_/b,t[1]*=_/b,u.bind(),c.bind(),u.attributes.dataCoord.pointer();var E=u.uniforms;E.dataShift=t,E.dataScale=e;var S=s.tickMarkLength,L=s.tickMarkWidth,C=s.tickMarkColor,P=6*f[0].length,z=Math.min(a.ge(f[0],(p[0]-d[0])/(d[2]-d[0]),l),f[0].length),O=Math.min(a.gt(f[0],(p[2]-d[0])/(d[2]-d[0]),l),f[0].length),D=0+6*z,I=6*Math.max(0,O-z),R=Math.min(a.ge(f[1],(p[1]-d[1])/(d[3]-d[1]),l),f[1].length),N=Math.min(a.gt(f[1],(p[3]-d[1])/(d[3]-d[1]),l),f[1].length),F=P+6*R,j=6*Math.max(0,N-R);i[0]=2*(m[0]-S[1])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[1]*v/y,o[1]=L[1]*v/b,j&&(E.color=C[1],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[1]-S[0])/b-1,o[0]=L[0]*v/y,o[1]=S[0]*v/b,I&&(E.color=C[0],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I)),i[0]=2*(m[2]+S[3])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[3]*v/y,o[1]=L[3]*v/b,j&&(E.color=C[3],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[3]+S[2])/b-1,o[0]=L[2]*v/y,o[1]=S[2]*v/b,I&&(E.color=C[2],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I))}}(),p.update=(h=[1,1,-1,-1,1,-1],d=[1,-1,1,1,-1,-1],function(t){for(var e=t.ticks,r=t.bounds,n=new Float32Array(18*(e[0].length+e[1].length)),i=(this.plot.zeroLineEnable,0),a=[[],[]],o=0;o<2;++o)for(var s=a[o],l=e[o],c=r[o],u=r[o+2],f=0;f<l.length;++f){var p=(l[f].x-c)/(u-c);s.push(p);for(var m=0;m<6;++m)n[i++]=p,n[i++]=h[m],n[i++]=d[m]}this.ticks=a,this.vbo.update(n)}),p.dispose=function(){this.vbo.dispose(),this.shader.dispose(),this.tickShader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220}],204:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[-1,-1,-1,1,1,-1,1,1]),s=i(e,a.lineVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawLine=(s=[0,0],l=[0,0],function(t,e,r,n,i,a){var o=this.plot,c=this.shader,u=o.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,c.uniforms.start=s,c.uniforms.end=l,c.uniforms.width=i*o.pixelRatio,c.uniforms.color=a,u.drawArrays(u.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],205:[function(t,e,r){"use strict";var n=t("glslify"),i=n(["precision lowp float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = vec4(color.xyz * color.w, color.w);\n}\n"]);e.exports={lineVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 start, end;\nuniform float width;\n\nvec2 perp(vec2 v) {\n  return vec2(v.y, -v.x);\n}\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  vec2 delta = normalize(perp(start - end));\n  vec2 offset = mix(start, end, 0.5 * (coord.y+1.0));\n  gl_Position = vec4(screen(offset + 0.5 * width * delta * coord.x), 0, 1);\n}\n"]),lineFrag:i,textVert:n(["#define GLSLIFY 1\nattribute vec3 textCoordinate;\n\nuniform vec2 dataScale, dataShift, dataAxis, screenOffset, textScale;\nuniform float angle;\n\nvoid main() {\n  float dataOffset  = textCoordinate.z;\n  vec2 glyphOffset  = textCoordinate.xy;\n  mat2 glyphMatrix = mat2(cos(angle), sin(angle), -sin(angle), cos(angle));\n  vec2 screenCoordinate = dataAxis * (dataScale * dataOffset + dataShift) +\n    glyphMatrix * glyphOffset * textScale + screenOffset;\n  gl_Position = vec4(screenCoordinate, 0, 1);\n}\n"]),textFrag:i,gridVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale;\nuniform float lineWidth;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  pos += 10.0 * dataCoord.y * vec2(dataAxis.y, -dataAxis.x) + dataCoord.z * lineWidth;\n  gl_Position = vec4(pos, 0, 1);\n}\n"]),gridFrag:i,boxVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 lo, hi;\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  gl_Position = vec4(screen(mix(lo, hi, coord)), 0, 1);\n}\n"]),tickVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale, screenOffset, tickScale;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  gl_Position = vec4(pos + tickScale*dataCoord.yz + screenOffset, 0, 1);\n}\n"])}},{glslify:253}],206:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,s.textVert,s.textFrag);return new l(t,r,a)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("text-cache"),o=t("binary-search-bounds"),s=t("./shaders");function l(t,e,r){this.plot=t,this.vbo=e,this.shader=r,this.tickOffset=[[],[]],this.tickX=[[],[]],this.labelOffset=[0,0],this.labelCount=[0,0]}var c,u,f,h,d,p,m=l.prototype;m.drawTicks=(c=[0,0],u=[0,0],f=[0,0],function(t){var e=this.plot,r=this.shader,n=this.tickX[t],i=this.tickOffset[t],a=e.gl,s=e.viewBox,l=e.dataBox,h=e.screenBox,d=e.pixelRatio,p=e.tickEnable,m=e.tickPad,v=e.tickColor,g=e.tickAngle,y=e.labelEnable,b=e.labelPad,x=e.labelColor,_=e.labelAngle,w=this.labelOffset[t],M=this.labelCount[t],k=o.lt(n,l[t]),A=o.le(n,l[t+2]);c[0]=c[1]=0,c[t]=1,u[t]=(s[2+t]+s[t])/(h[2+t]-h[t])-1;var T=2/h[2+(1^t)]-h[1^t];u[1^t]=T*s[1^t]-1,p[t]&&(u[1^t]-=T*d*m[t],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t],r.uniforms.angle=g[t],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t]&&M&&(u[1^t]-=T*d*b[t],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t],r.uniforms.angle=_[t],a.drawArrays(a.TRIANGLES,w,M)),u[1^t]=T*s[2+(1^t)]-1,p[t+2]&&(u[1^t]+=T*d*m[t+2],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t+2],r.uniforms.angle=g[t+2],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t+2]&&M&&(u[1^t]+=T*d*b[t+2],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t+2],r.uniforms.angle=_[t+2],a.drawArrays(a.TRIANGLES,w,M))}),m.drawTitle=function(){var t=[0,0],e=[0,0];return function(){var r=this.plot,n=this.shader,i=r.gl,a=r.screenBox,o=r.titleCenter,s=r.titleAngle,l=r.titleColor,c=r.pixelRatio;if(this.titleCount){for(var u=0;u<2;++u)e[u]=2*(o[u]*c-a[u])/(a[2+u]-a[u])-1;n.bind(),n.uniforms.dataAxis=t,n.uniforms.screenOffset=e,n.uniforms.angle=s,n.uniforms.color=l,i.drawArrays(i.TRIANGLES,this.titleOffset,this.titleCount)}}}(),m.bind=(h=[0,0],d=[0,0],p=[0,0],function(){var t=this.plot,e=this.shader,r=t._tickBounds,n=t.dataBox,i=t.screenBox,a=t.viewBox;e.bind();for(var o=0;o<2;++o){var s=r[o],l=r[o+2]-s,c=.5*(n[o+2]+n[o]),u=n[o+2]-n[o],f=a[o],m=a[o+2]-f,v=i[o],g=i[o+2]-v;d[o]=2*l/u*m/g,h[o]=2*(s-c)/u*m/g}p[1]=2*t.pixelRatio/(i[3]-i[1]),p[0]=p[1]*(i[3]-i[1])/(i[2]-i[0]),e.uniforms.dataScale=d,e.uniforms.dataShift=h,e.uniforms.textScale=p,this.vbo.bind(),e.attributes.textCoordinate.pointer()}),m.update=function(t){var e,r,n,i,o,s=[],l=t.ticks,c=t.bounds;for(o=0;o<2;++o){var u=[Math.floor(s.length/3)],f=[-1/0],h=l[o];for(e=0;e<h.length;++e){var d=h[e],p=d.x,m=d.text,v=d.font||"sans-serif";i=d.fontSize||12;for(var g=1/(c[o+2]-c[o]),y=c[o],b=m.split("\n"),x=0;x<b.length;x++)for(n=a(v,b[x]).data,r=0;r<n.length;r+=2)s.push(n[r]*i,-n[r+1]*i-x*i*1.2,(p-y)*g);u.push(Math.floor(s.length/3)),f.push(p)}this.tickOffset[o]=u,this.tickX[o]=f}for(o=0;o<2;++o){for(this.labelOffset[o]=Math.floor(s.length/3),n=a(t.labelFont[o],t.labels[o],{textAlign:"center"}).data,i=t.labelSize[o],e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.labelCount[o]=Math.floor(s.length/3)-this.labelOffset[o]}for(this.titleOffset=Math.floor(s.length/3),n=a(t.titleFont,t.title).data,i=t.titleSize,e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.titleCount=Math.floor(s.length/3)-this.titleOffset,this.vbo.update(s)},m.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220,"text-cache":525}],207:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],208:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[e.drawingBufferWidth,e.drawingBufferHeight]),c=new l(e,r);return c.grid=i(c),c.text=a(c),c.line=o(c),c.box=s(c),c.update(t),c};var n=t("gl-select-static"),i=t("./lib/grid"),a=t("./lib/text"),o=t("./lib/line"),s=t("./lib/box");function l(t,e){this.gl=t,this.pickBuffer=e,this.screenBox=[0,0,t.drawingBufferWidth,t.drawingBufferHeight],this.viewBox=[0,0,0,0],this.dataBox=[-10,-10,10,10],this.gridLineEnable=[!0,!0],this.gridLineWidth=[1,1],this.gridLineColor=[[0,0,0,1],[0,0,0,1]],this.pixelRatio=1,this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickEnable=[!0,!0,!0,!0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[15,15,15,15],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelEnable=[!0,!0,!0,!0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.titleCenter=[0,0],this.titleEnable=!0,this.titleAngle=0,this.titleColor=[0,0,0,1],this.borderColor=[0,0,0,0],this.backgroundColor=[0,0,0,0],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[4,4],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderLineEnable=[!0,!0,!0,!0],this.borderLineWidth=[2,2,2,2],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.grid=null,this.text=null,this.line=null,this.box=null,this.objects=[],this.overlays=[],this._tickBounds=[1/0,1/0,-1/0,-1/0],this.static=!1,this.dirty=!1,this.pickDirty=!1,this.pickDelay=120,this.pickRadius=10,this._pickTimeout=null,this._drawPick=this.drawPick.bind(this),this._depthCounter=0}var c=l.prototype;function u(t){for(var e=t.slice(),r=0;r<e.length;++r)e[r]=e[r].slice();return e}function f(t,e){return t.x-e.x}c.setDirty=function(){this.dirty=this.pickDirty=!0},c.setOverlayDirty=function(){this.dirty=!0},c.nextDepthValue=function(){return this._depthCounter++/65536},c.draw=function(){var t=this.gl,e=this.screenBox,r=this.viewBox,n=this.dataBox,i=this.pixelRatio,a=this.grid,o=this.line,s=this.text,l=this.objects;if(this._depthCounter=0,this.pickDirty&&(this._pickTimeout&&clearTimeout(this._pickTimeout),this.pickDirty=!1,this._pickTimeout=setTimeout(this._drawPick,this.pickDelay)),this.dirty){if(this.dirty=!1,t.bindFramebuffer(t.FRAMEBUFFER,null),t.enable(t.SCISSOR_TEST),t.disable(t.DEPTH_TEST),t.depthFunc(t.LESS),t.depthMask(!1),t.enable(t.BLEND),t.blendEquation(t.FUNC_ADD,t.FUNC_ADD),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),this.borderColor){t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]);var c=this.borderColor;t.clearColor(c[0]*c[3],c[1]*c[3],c[2]*c[3],c[3]),t.clear(t.COLOR_BUFFER_BIT|t.DEPTH_BUFFER_BIT)}t.scissor(r[0],r[1],r[2]-r[0],r[3]-r[1]),t.viewport(r[0],r[1],r[2]-r[0],r[3]-r[1]);var u=this.backgroundColor;t.clearColor(u[0]*u[3],u[1]*u[3],u[2]*u[3],u[3]),t.clear(t.COLOR_BUFFER_BIT),a.draw();var f=this.zeroLineEnable,h=this.zeroLineColor,d=this.zeroLineWidth;if(f[0]||f[1]){o.bind();for(var p=0;p<2;++p)if(f[p]&&n[p]<=0&&n[p+2]>=0){var m=e[p]-n[p]*(e[p+2]-e[p])/(n[p+2]-n[p]);0===p?o.drawLine(m,e[1],m,e[3],d[p],h[p]):o.drawLine(e[0],m,e[2],m,d[p],h[p])}}for(p=0;p<l.length;++p)l[p].draw();t.viewport(e[0],e[1],e[2]-e[0],e[3]-e[1]),t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]),this.grid.drawTickMarks(),o.bind();var v=this.borderLineEnable,g=this.borderLineWidth,y=this.borderLineColor;for(v[1]&&o.drawLine(r[0],r[1]-.5*g[1]*i,r[0],r[3]+.5*g[3]*i,g[1],y[1]),v[0]&&o.drawLine(r[0]-.5*g[0]*i,r[1],r[2]+.5*g[2]*i,r[1],g[0],y[0]),v[3]&&o.drawLine(r[2],r[1]-.5*g[1]*i,r[2],r[3]+.5*g[3]*i,g[3],y[3]),v[2]&&o.drawLine(r[0]-.5*g[0]*i,r[3],r[2]+.5*g[2]*i,r[3],g[2],y[2]),s.bind(),p=0;p<2;++p)s.drawTicks(p);this.titleEnable&&s.drawTitle();var b=this.overlays;for(p=0;p<b.length;++p)b[p].draw();t.disable(t.SCISSOR_TEST),t.disable(t.BLEND),t.depthMask(!0)}},c.drawPick=function(){if(!this.static){var t=this.pickBuffer;this.gl;this._pickTimeout=null,t.begin();for(var e=1,r=this.objects,n=0;n<r.length;++n)e=r[n].drawPick(e);t.end()}},c.pick=function(t,e){if(!this.static){var r=this.pixelRatio,n=this.pickPixelRatio,i=this.viewBox,a=0|Math.round((t-i[0]/r)*n),o=0|Math.round((e-i[1]/r)*n),s=this.pickBuffer.query(a,o,this.pickRadius);if(!s)return null;for(var l=s.id+(s.value[0]<<8)+(s.value[1]<<16)+(s.value[2]<<24),c=this.objects,u=0;u<c.length;++u){var f=c[u].pick(a,o,l);if(f)return f}return null}},c.setScreenBox=function(t){var e=this.screenBox,r=this.pixelRatio;e[0]=0|Math.round(t[0]*r),e[1]=0|Math.round(t[1]*r),e[2]=0|Math.round(t[2]*r),e[3]=0|Math.round(t[3]*r),this.setDirty()},c.setDataBox=function(t){var e=this.dataBox;(e[0]!==t[0]||e[1]!==t[1]||e[2]!==t[2]||e[3]!==t[3])&&(e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],this.setDirty())},c.setViewBox=function(t){var e=this.pixelRatio,r=this.viewBox;r[0]=0|Math.round(t[0]*e),r[1]=0|Math.round(t[1]*e),r[2]=0|Math.round(t[2]*e),r[3]=0|Math.round(t[3]*e);var n=this.pickPixelRatio;this.pickBuffer.shape=[0|Math.round((t[2]-t[0])*n),0|Math.round((t[3]-t[1])*n)],this.setDirty()},c.update=function(t){t=t||{};var e=this.gl;this.pixelRatio=t.pixelRatio||1;var r=this.pixelRatio;this.pickPixelRatio=Math.max(r,1),this.setScreenBox(t.screenBox||[0,0,e.drawingBufferWidth/r,e.drawingBufferHeight/r]);this.screenBox;this.setViewBox(t.viewBox||[.125*(this.screenBox[2]-this.screenBox[0])/r,.125*(this.screenBox[3]-this.screenBox[1])/r,.875*(this.screenBox[2]-this.screenBox[0])/r,.875*(this.screenBox[3]-this.screenBox[1])/r]);var n=this.viewBox,i=(n[2]-n[0])/(n[3]-n[1]);this.setDataBox(t.dataBox||[-10,-10/i,10,10/i]),this.borderColor=!1!==t.borderColor&&(t.borderColor||[0,0,0,0]).slice(),this.backgroundColor=(t.backgroundColor||[0,0,0,0]).slice(),this.gridLineEnable=(t.gridLineEnable||[!0,!0]).slice(),this.gridLineWidth=(t.gridLineWidth||[1,1]).slice(),this.gridLineColor=u(t.gridLineColor||[[.5,.5,.5,1],[.5,.5,.5,1]]),this.zeroLineEnable=(t.zeroLineEnable||[!0,!0]).slice(),this.zeroLineWidth=(t.zeroLineWidth||[4,4]).slice(),this.zeroLineColor=u(t.zeroLineColor||[[0,0,0,1],[0,0,0,1]]),this.tickMarkLength=(t.tickMarkLength||[0,0,0,0]).slice(),this.tickMarkWidth=(t.tickMarkWidth||[0,0,0,0]).slice(),this.tickMarkColor=u(t.tickMarkColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.titleCenter=(t.titleCenter||[.5*(n[0]+n[2])/r,(n[3]+120)/r]).slice(),this.titleEnable=!("titleEnable"in t&&!t.titleEnable),this.titleAngle=t.titleAngle||0,this.titleColor=(t.titleColor||[0,0,0,1]).slice(),this.labelPad=(t.labelPad||[15,15,15,15]).slice(),this.labelAngle=(t.labelAngle||[0,Math.PI/2,0,3*Math.PI/2]).slice(),this.labelEnable=(t.labelEnable||[!0,!0,!0,!0]).slice(),this.labelColor=u(t.labelColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.tickPad=(t.tickPad||[15,15,15,15]).slice(),this.tickAngle=(t.tickAngle||[0,0,0,0]).slice(),this.tickEnable=(t.tickEnable||[!0,!0,!0,!0]).slice(),this.tickColor=u(t.tickColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.borderLineEnable=(t.borderLineEnable||[!0,!0,!0,!0]).slice(),this.borderLineWidth=(t.borderLineWidth||[2,2,2,2]).slice(),this.borderLineColor=u(t.borderLineColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]);var a=t.ticks||[[],[]],o=this._tickBounds;o[0]=o[1]=1/0,o[2]=o[3]=-1/0;for(var s=0;s<2;++s){var l=a[s].slice(0);0!==l.length&&(l.sort(f),o[s]=Math.min(o[s],l[0].x),o[s+2]=Math.max(o[s+2],l[l.length-1].x))}this.grid.update({bounds:o,ticks:a}),this.text.update({bounds:o,ticks:a,labels:t.labels||["x","y"],labelSize:t.labelSize||[12,12],labelFont:t.labelFont||["sans-serif","sans-serif"],title:t.title||"",titleSize:t.titleSize||18,titleFont:t.titleFont||"sans-serif"}),this.static=!!t.static,this.setDirty()},c.dispose=function(){this.box.dispose(),this.grid.dispose(),this.text.dispose(),this.line.dispose();for(var t=this.objects.length-1;t>=0;--t)this.objects[t].dispose();this.objects.length=0;for(t=this.overlays.length-1;t>=0;--t)this.overlays[t].dispose();this.overlays.length=0,this.gl=null},c.addObject=function(t){this.objects.indexOf(t)<0&&(this.objects.push(t),this.setDirty())},c.removeObject=function(t){for(var e=this.objects,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setDirty();break}},c.addOverlay=function(t){this.overlays.indexOf(t)<0&&(this.overlays.push(t),this.setOverlayDirty())},c.removeOverlay=function(t){for(var e=this.overlays,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setOverlayDirty();break}}},{"./lib/box":202,"./lib/grid":203,"./lib/line":204,"./lib/text":206,"gl-select-static":219}],209:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\nattribute vec2 position;\nvarying vec2 uv;\nvoid main() {\n  uv = position;\n  gl_Position = vec4(position, 0, 1);\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D accumBuffer;\nvarying vec2 uv;\n\nvoid main() {\n  vec4 accum = texture2D(accumBuffer, 0.5 * (uv + 1.0));\n  gl_FragColor = min(vec4(1,1,1,1), accum);\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec2"}])}},{"gl-shader":220,glslify:253}],210:[function(t,e,r){"use strict";e.exports=function(t){var e=!1,r=((t=t||{}).pixelRatio||parseFloat(window.devicePixelRatio),t.canvas);if(!r)if(r=document.createElement("canvas"),t.container){var v=t.container;v.appendChild(r)}else document.body.appendChild(r);var g=t.gl;g||(g=function(t,e){var r=null;try{(r=t.getContext("webgl",e))||(r=t.getContext("experimental-webgl",e))}catch(t){return null}return r}(r,t.glOptions||{premultipliedAlpha:!0,antialias:!0}));if(!g)throw new Error("webgl not supported");var y=t.bounds||[[-10,-10,-10],[10,10,10]],b=new function(){this.mouse=[-1,-1],this.screen=null,this.distance=1/0,this.index=null,this.dataCoordinate=null,this.dataPosition=null,this.object=null,this.data=null},x=l(g,[g.drawingBufferWidth,g.drawingBufferHeight],{preferFloat:!d}),_=h(g),w=t.camera||{eye:[2,0,0],center:[0,0,0],up:[0,1,0],zoomMin:.1,zoomMax:100,mode:"turntable"},M=t.axes||{},k=i(g,M);k.enable=!M.disable;var A=t.spikes||{},T=o(g,A),E=[],S=[],L=[],C=[],P=!0,z=!0,O=new Array(16),D=new Array(16),I={view:null,projection:O,model:D},z=!0,R=[g.drawingBufferWidth,g.drawingBufferHeight],N={gl:g,contextLost:!1,pixelRatio:t.pixelRatio||parseFloat(window.devicePixelRatio),canvas:r,selection:b,camera:n(r,w),axes:k,axesPixels:null,spikes:T,bounds:y,objects:E,shape:R,aspect:t.aspectRatio||[1,1,1],pickRadius:t.pickRadius||10,zNear:t.zNear||.01,zFar:t.zFar||1e3,fovy:t.fovy||Math.PI/4,clearColor:t.clearColor||[0,0,0,0],autoResize:m(t.autoResize),autoBounds:m(t.autoBounds),autoScale:!!t.autoScale,autoCenter:m(t.autoCenter),clipToBounds:m(t.clipToBounds),snapToData:!!t.snapToData,onselect:t.onselect||null,onrender:t.onrender||null,onclick:t.onclick||null,cameraParams:I,oncontextloss:null,mouseListener:null},F=[g.drawingBufferWidth/N.pixelRatio|0,g.drawingBufferHeight/N.pixelRatio|0];function j(){if(!e&&N.autoResize){var t=r.parentNode,n=1,i=1;t&&t!==document.body?(n=t.clientWidth,i=t.clientHeight):(n=window.innerWidth,i=window.innerHeight);var a=0|Math.ceil(n*N.pixelRatio),o=0|Math.ceil(i*N.pixelRatio);if(a!==r.width||o!==r.height){r.width=a,r.height=o;var s=r.style;s.position=s.position||"absolute",s.left="0px",s.top="0px",s.width=n+"px",s.height=i+"px",P=!0}}}N.autoResize&&j();function B(){for(var t=E.length,e=C.length,r=0;r<e;++r)L[r]=0;t:for(var r=0;r<t;++r){var n=E[r],i=n.pickSlots;if(i){for(var a=0;a<e;++a)if(L[a]+i<255){S[r]=a,n.setPickBase(L[a]+1),L[a]+=i;continue t}var o=s(g,R);S[r]=e,C.push(o),L.push(i),n.setPickBase(1),e+=1}else S[r]=-1}for(;e>0&&0===L[e-1];)L.pop(),C.pop().dispose()}window.addEventListener("resize",j),N.update=function(t){e||(t=t||{},P=!0,z=!0)},N.add=function(t){e||(t.axes=k,E.push(t),S.push(-1),P=!0,z=!0,B())},N.remove=function(t){if(!e){var r=E.indexOf(t);r<0||(E.splice(r,1),S.pop(),P=!0,z=!0,B())}},N.dispose=function(){if(!e&&(e=!0,window.removeEventListener("resize",j),r.removeEventListener("webglcontextlost",q),N.mouseListener.enabled=!1,!N.contextLost)){k.dispose(),T.dispose();for(var t=0;t<E.length;++t)E[t].dispose();x.dispose();for(var t=0;t<C.length;++t)C[t].dispose();_.dispose(),g=null,k=null,T=null,E=[]}};var U=!1,V=0;function q(){if(N.contextLost)return!0;g.isContextLost()&&(N.contextLost=!0,N.mouseListener.enabled=!1,N.selection.object=null,N.oncontextloss&&N.oncontextloss())}N.mouseListener=u(r,function(t,r,n){if(!e){var i=C.length,a=E.length,o=b.object;b.distance=1/0,b.mouse[0]=r,b.mouse[1]=n,b.object=null,b.screen=null,b.dataCoordinate=b.dataPosition=null;var s=!1;if(t&&V)U=!0;else{U&&(z=!0),U=!1;for(var l=0;l<i;++l){var c=C[l].query(r,F[1]-n-1,N.pickRadius);if(c){if(c.distance>b.distance)continue;for(var u=0;u<a;++u){var f=E[u];if(S[u]===l){var h=f.pick(c);h&&(b.buttons=t,b.screen=c.coord,b.distance=c.distance,b.object=f,b.index=h.distance,b.dataPosition=h.position,b.dataCoordinate=h.dataCoordinate,b.data=h,s=!0)}}}}}o&&o!==b.object&&(o.highlight&&o.highlight(null),P=!0),b.object&&(b.object.highlight&&b.object.highlight(b.data),P=!0),(s=s||b.object!==o)&&N.onselect&&N.onselect(b),1&t&&!(1&V)&&N.onclick&&N.onclick(b),V=t}}),r.addEventListener("webglcontextlost",q);var H=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],G=[H[0].slice(),H[1].slice()];function Y(){if(!q()){j();var t=N.camera.tick();I.view=N.camera.matrix,P=P||t,z=z||t,k.pixelRatio=N.pixelRatio,T.pixelRatio=N.pixelRatio;var e=E.length,r=H[0],n=H[1];r[0]=r[1]=r[2]=1/0,n[0]=n[1]=n[2]=-1/0;for(var i=0;i<e;++i){var o=E[i];o.pixelRatio=N.pixelRatio,o.axes=N.axes,P=P||!!o.dirty,z=z||!!o.dirty;var s=o.bounds;if(s)for(var l=s[0],u=s[1],h=0;h<3;++h)r[h]=Math.min(r[h],l[h]),n[h]=Math.max(n[h],u[h])}var d=N.bounds;if(N.autoBounds)for(var h=0;h<3;++h){if(n[h]<r[h])r[h]=-1,n[h]=1;else{r[h]===n[h]&&(r[h]-=1,n[h]+=1);var m=.05*(n[h]-r[h]);r[h]=r[h]-m,n[h]=n[h]+m}d[0][h]=r[h],d[1][h]=n[h]}for(var v=!1,h=0;h<3;++h)v=v||G[0][h]!==d[0][h]||G[1][h]!==d[1][h],G[0][h]=d[0][h],G[1][h]=d[1][h];if(z=z||v,P=P||v){if(v){for(var y=[0,0,0],i=0;i<3;++i)y[i]=p((d[1][i]-d[0][i])/10);k.autoTicks?k.update({bounds:d,tickSpacing:y}):k.update({bounds:d})}var w=g.drawingBufferWidth,M=g.drawingBufferHeight;R[0]=w,R[1]=M,F[0]=0|Math.max(w/N.pixelRatio,1),F[1]=0|Math.max(M/N.pixelRatio,1),f(O,N.fovy,w/M,N.zNear,N.zFar);for(var i=0;i<16;++i)D[i]=0;D[15]=1;for(var A=0,i=0;i<3;++i)A=Math.max(A,d[1][i]-d[0][i]);for(var i=0;i<3;++i)N.autoScale?D[5*i]=N.aspect[i]/(d[1][i]-d[0][i]):D[5*i]=1/A,N.autoCenter&&(D[12+i]=.5*-D[5*i]*(d[0][i]+d[1][i]));for(var i=0;i<e;++i){var o=E[i];o.axesBounds=d,N.clipToBounds&&(o.clipBounds=d)}b.object&&(N.snapToData?T.position=b.dataCoordinate:T.position=b.dataPosition,T.bounds=d),z&&(z=!1,function(){if(q())return;g.colorMask(!0,!0,!0,!0),g.depthMask(!0),g.disable(g.BLEND),g.enable(g.DEPTH_TEST);for(var t=E.length,e=C.length,r=0;r<e;++r){var n=C[r];n.shape=F,n.begin();for(var i=0;i<t;++i)if(S[i]===r){var a=E[i];a.drawPick&&(a.pixelRatio=1,a.drawPick(I))}n.end()}}()),N.axesPixels=a(N.axes,I,w,M),N.onrender&&N.onrender(),g.bindFramebuffer(g.FRAMEBUFFER,null),g.viewport(0,0,w,M);var L=N.clearColor;g.clearColor(L[0],L[1],L[2],L[3]),g.clear(g.COLOR_BUFFER_BIT|g.DEPTH_BUFFER_BIT),g.depthMask(!0),g.colorMask(!0,!0,!0,!0),g.enable(g.DEPTH_TEST),g.depthFunc(g.LEQUAL),g.disable(g.BLEND),g.disable(g.CULL_FACE);var B=!1;k.enable&&(B=B||k.isTransparent(),k.draw(I)),T.axes=k,b.object&&T.draw(I),g.disable(g.CULL_FACE);for(var i=0;i<e;++i){var o=E[i];o.axes=k,o.pixelRatio=N.pixelRatio,o.isOpaque&&o.isOpaque()&&o.draw(I),o.isTransparent&&o.isTransparent()&&(B=!0)}if(B){x.shape=R,x.bind(),g.clear(g.DEPTH_BUFFER_BIT),g.colorMask(!1,!1,!1,!1),g.depthMask(!0),g.depthFunc(g.LESS),k.enable&&k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isOpaque&&o.isOpaque()&&o.draw(I)}g.enable(g.BLEND),g.blendEquation(g.FUNC_ADD),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.colorMask(!0,!0,!0,!0),g.depthMask(!1),g.clearColor(0,0,0,0),g.clear(g.COLOR_BUFFER_BIT),k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isTransparent&&o.isTransparent()&&o.drawTransparent(I)}g.bindFramebuffer(g.FRAMEBUFFER,null),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.disable(g.DEPTH_TEST),_.bind(),x.color[0].bind(0),_.uniforms.accumBuffer=0,c(g),g.disable(g.BLEND)}P=!1;for(var i=0;i<e;++i)E[i].dirty=!1}}}return function t(){e||N.contextLost||(requestAnimationFrame(t),Y())}(),N.redraw=function(){e||(P=!0,Y())},N};var n=t("3d-view-controls"),i=t("gl-axes3d"),a=t("gl-axes3d/properties"),o=t("gl-spikes3d"),s=t("gl-select-static"),l=t("gl-fbo"),c=t("a-big-triangle"),u=t("mouse-change"),f=t("gl-mat4/perspective"),h=t("./lib/shader"),d=t("is-mobile")();function p(t){var e=Math.round(Math.log(Math.abs(t))/Math.log(10));if(e<0){var r=Math.round(Math.pow(10,-e));return Math.ceil(t*r)/r}if(e>0){r=Math.round(Math.pow(10,e));return Math.ceil(t/r)*r}return Math.ceil(t)}function m(t){return"boolean"!=typeof t||t}},{"./lib/shader":209,"3d-view-controls":39,"a-big-triangle":42,"gl-axes3d":157,"gl-axes3d/properties":164,"gl-fbo":171,"gl-mat4/perspective":189,"gl-select-static":219,"gl-spikes3d":229,"is-mobile":265,"mouse-change":424}],211:[function(t,e,r){var n=t("glslify");r.pointVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform float pointCloud;\n\nhighp float rand(vec2 co) {\n  highp float a = 12.9898;\n  highp float b = 78.233;\n  highp float c = 43758.5453;\n  highp float d = dot(co.xy, vec2(a, b));\n  highp float e = mod(d, 3.14);\n  return fract(sin(e) * c);\n}\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n    // if we don't jitter the point size a bit, overall point cloud\n    // saturation 'jumps' on zooming, which is disturbing and confusing\n  gl_PointSize = pointSize * ((19.5 + rand(position)) / 20.0);\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    // get the same square surface as circle would be\n    gl_PointSize *= 0.886;\n  }\n}"]),r.pointFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 color, borderColor;\nuniform float centerFraction;\nuniform float pointCloud;\n\nvoid main() {\n  float radius;\n  vec4 baseColor;\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    if(centerFraction == 1.0) {\n      gl_FragColor = color;\n    } else {\n      gl_FragColor = mix(borderColor, color, centerFraction);\n    }\n  } else {\n    radius = length(2.0 * gl_PointCoord.xy - 1.0);\n    if(radius > 1.0) {\n      discard;\n    }\n    baseColor = mix(borderColor, color, step(radius, centerFraction));\n    gl_FragColor = vec4(baseColor.rgb * baseColor.a, baseColor.a);\n  }\n}\n"]),r.pickVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform vec4 pickOffset;\n\nvarying vec4 fragId;\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n  gl_PointSize = pointSize;\n\n  vec4 id = pickId + pickOffset;\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  fragId = id;\n}\n"]),r.pickFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\n\nvoid main() {\n  float radius = length(2.0 * gl_PointCoord.xy - 1.0);\n  if(radius > 1.0) {\n    discard;\n  }\n  gl_FragColor = fragId / 255.0;\n}\n"])},{glslify:253}],212:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("typedarray-pool"),o=t("./lib/shader");function s(t,e,r,n,i){this.plot=t,this.offsetBuffer=e,this.pickBuffer=r,this.shader=n,this.pickShader=i,this.sizeMin=.5,this.sizeMinCap=2,this.sizeMax=20,this.areaRatio=1,this.pointCount=0,this.color=[1,0,0,1],this.borderColor=[0,0,0,1],this.blend=!1,this.pickOffset=0,this.points=null}e.exports=function(t,e){var r=t.gl,a=i(r),l=i(r),c=n(r,o.pointVertex,o.pointFragment),u=n(r,o.pickVertex,o.pickFragment),f=new s(t,a,l,c,u);return f.update(e),t.addObject(f),f};var l,c,u=s.prototype;u.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.offsetBuffer.dispose(),this.pickBuffer.dispose(),this.plot.removeObject(this)},u.update=function(t){var e;function r(e,r){return e in t?t[e]:r}t=t||{},this.sizeMin=r("sizeMin",.5),this.sizeMax=r("sizeMax",20),this.color=r("color",[1,0,0,1]).slice(),this.areaRatio=r("areaRatio",1),this.borderColor=r("borderColor",[0,0,0,1]).slice(),this.blend=r("blend",!1);var n=t.positions.length>>>1,i=t.positions instanceof Float32Array,o=t.idToIndex instanceof Int32Array&&t.idToIndex.length>=n,s=t.positions,l=i?s:a.mallocFloat32(s.length),c=o?t.idToIndex:a.mallocInt32(n);if(i||l.set(s),!o)for(l.set(s),e=0;e<n;e++)c[e]=e;this.points=s,this.offsetBuffer.update(l),this.pickBuffer.update(c),i||a.free(l),o||a.free(c),this.pointCount=n,this.pickOffset=0},u.unifiedDraw=(l=[1,0,0,0,1,0,0,0,1],c=[0,0,0,0],function(t){var e=void 0!==t,r=e?this.pickShader:this.shader,n=this.plot.gl,i=this.plot.dataBox;if(0===this.pointCount)return t;var a=i[2]-i[0],o=i[3]-i[1],s=function(t,e){var r,n=0,i=t.length>>>1;for(r=0;r<i;r++){var a=t[2*r],o=t[2*r+1];a>=e[0]&&a<=e[2]&&o>=e[1]&&o<=e[3]&&n++}return n}(this.points,i),u=this.plot.pickPixelRatio*Math.max(Math.min(this.sizeMinCap,this.sizeMin),Math.min(this.sizeMax,this.sizeMax/Math.pow(s,.33333)));l[0]=2/a,l[4]=2/o,l[6]=-2*i[0]/a-1,l[7]=-2*i[1]/o-1,this.offsetBuffer.bind(),r.bind(),r.attributes.position.pointer(),r.uniforms.matrix=l,r.uniforms.color=this.color,r.uniforms.borderColor=this.borderColor,r.uniforms.pointCloud=u<5,r.uniforms.pointSize=u,r.uniforms.centerFraction=Math.min(1,Math.max(0,Math.sqrt(1-this.areaRatio))),e&&(c[0]=255&t,c[1]=t>>8&255,c[2]=t>>16&255,c[3]=t>>24&255,this.pickBuffer.bind(),r.attributes.pickId.pointer(n.UNSIGNED_BYTE),r.uniforms.pickOffset=c,this.pickOffset=t);var f=n.getParameter(n.BLEND),h=n.getParameter(n.DITHER);return f&&!this.blend&&n.disable(n.BLEND),h&&n.disable(n.DITHER),n.drawArrays(n.POINTS,0,this.pointCount),f&&!this.blend&&n.enable(n.BLEND),h&&n.enable(n.DITHER),t+this.pointCount}),u.draw=u.unifiedDraw,u.drawPick=u.unifiedDraw,u.pick=function(t,e,r){var n=this.pickOffset,i=this.pointCount;if(r<n||r>=n+i)return null;var a=r-n,o=this.points;return{object:this,pointId:a,dataCoord:[o[2*a],o[2*a+1]]}}},{"./lib/shader":211,"gl-buffer":165,"gl-shader":220,"typedarray-pool":534}],213:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c=e[0],u=e[1],f=e[2],h=e[3],d=r[0],p=r[1],m=r[2],v=r[3];(a=c*d+u*p+f*m+h*v)<0&&(a=-a,d=-d,p=-p,m=-m,v=-v);1-a>1e-6?(i=Math.acos(a),o=Math.sin(i),s=Math.sin((1-n)*i)/o,l=Math.sin(n*i)/o):(s=1-n,l=n);return t[0]=s*c+l*d,t[1]=s*u+l*p,t[2]=s*f+l*m,t[3]=s*h+l*v,t}},{}],214:[function(t,e,r){"use strict";var n=t("vectorize-text");e.exports=function(t,e){var r=i[e];r||(r=i[e]={});if(t in r)return r[t];for(var a=n(t,{textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),o=n(t,{triangles:!0,textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),s=[[1/0,1/0],[-1/0,-1/0]],l=0;l<a.positions.length;++l)for(var c=a.positions[l],u=0;u<2;++u)s[0][u]=Math.min(s[0][u],c[u]),s[1][u]=Math.max(s[1][u],c[u]);return r[t]=[o,a,s]};var i={}},{"vectorize-text":548}],215:[function(t,e,r){var n=t("gl-shader"),i=t("glslify"),a=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform vec4 highlightId;\nuniform float highlightScale;\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   || \n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = 1.0;\n    if(distance(highlightId, id) < 0.0001) {\n      scale = highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1);\n    vec4 viewPosition = view * worldPosition;\n    viewPosition = viewPosition / viewPosition.w;\n    vec4 clipPosition = projection * (viewPosition + scale * vec4(glyph.x, -glyph.y, 0, 0));\n    \n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),o=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float highlightScale, pixelRatio;\nuniform vec4 highlightId;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = pixelRatio;\n    if(distance(highlightId.bgr, id.bgr) < 0.001) {\n      scale *= highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1.0);\n    vec4 viewPosition = view * worldPosition;\n    vec4 clipPosition = projection * viewPosition;\n    clipPosition /= clipPosition.w;\n    \n    gl_Position = clipPosition + vec4(screenSize * scale * vec2(glyph.x, -glyph.y), 0.0, 0.0);\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),s=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform float highlightScale;\nuniform vec4 highlightId;\nuniform vec3 axes[2];\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float scale, pixelRatio;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   ||\n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float lscale = pixelRatio * scale;\n    if(distance(highlightId, id) < 0.0001) {\n      lscale *= highlightScale;\n    }\n\n    vec4 clipCenter   = projection * view * model * vec4(position, 1);\n    vec3 dataPosition = position + 0.5*lscale*(axes[0] * glyph.x + axes[1] * glyph.y) * clipCenter.w * screenSize.y;\n    vec4 clipPosition = projection * view * model * vec4(dataPosition, 1);\n\n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = dataPosition;\n  }\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float opacity;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   ||\n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = interpColor * opacity;\n  }\n}\n"]),c=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float pickGroup;\n\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   || \n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = vec4(pickGroup, pickId.bgr);\n  }\n}"]),u=[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"glyph",type:"vec2"},{name:"id",type:"vec4"}],f={vertex:a,fragment:l,attributes:u},h={vertex:o,fragment:l,attributes:u},d={vertex:s,fragment:l,attributes:u},p={vertex:a,fragment:c,attributes:u},m={vertex:o,fragment:c,attributes:u},v={vertex:s,fragment:c,attributes:u};function g(t,e){var r=n(t,e),i=r.attributes;return i.position.location=0,i.color.location=1,i.glyph.location=2,i.id.location=3,r}r.createPerspective=function(t){return g(t,f)},r.createOrtho=function(t){return g(t,h)},r.createProject=function(t){return g(t,d)},r.createPickPerspective=function(t){return g(t,p)},r.createPickOrtho=function(t){return g(t,m)},r.createPickProject=function(t){return g(t,v)}},{"gl-shader":220,glslify:253}],216:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("typedarray-pool"),o=t("gl-mat4/multiply"),s=t("./lib/shaders"),l=t("./lib/glyphs"),c=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function u(t,e){var r=t[0],n=t[1],i=t[2],a=t[3];return t[0]=e[0]*r+e[4]*n+e[8]*i+e[12]*a,t[1]=e[1]*r+e[5]*n+e[9]*i+e[13]*a,t[2]=e[2]*r+e[6]*n+e[10]*i+e[14]*a,t[3]=e[3]*r+e[7]*n+e[11]*i+e[15]*a,t}function f(t,e,r,n){return u(n,n),u(n,n),u(n,n)}function h(t,e,r,n,i,a,o,s,l,c,u,f){this.gl=t,this.pixelRatio=1,this.shader=e,this.orthoShader=r,this.projectShader=n,this.pointBuffer=i,this.colorBuffer=a,this.glyphBuffer=o,this.idBuffer=s,this.vao=l,this.vertexCount=0,this.lineVertexCount=0,this.opacity=1,this.lineWidth=0,this.projectScale=[2/3,2/3,2/3],this.projectOpacity=[1,1,1],this.pickId=0,this.pickPerspectiveShader=c,this.pickOrthoShader=u,this.pickProjectShader=f,this.points=[],this._selectResult=new function(t,e){this.index=t,this.dataCoordinate=this.position=e}(0,[0,0,0]),this.useOrtho=!0,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.axesProject=[!0,!0,!0],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.highlightId=[1,1,1,1],this.highlightScale=2,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.dirty=!0}e.exports=function(t){var e=t.gl,r=s.createPerspective(e),a=s.createOrtho(e),o=s.createProject(e),l=s.createPickPerspective(e),c=s.createPickOrtho(e),u=s.createPickProject(e),f=n(e),d=n(e),p=n(e),m=n(e),v=i(e,[{buffer:f,size:3,type:e.FLOAT},{buffer:d,size:4,type:e.FLOAT},{buffer:p,size:2,type:e.FLOAT},{buffer:m,size:4,type:e.UNSIGNED_BYTE,normalized:!0}]),g=new h(e,r,a,o,f,d,p,m,v,l,c,u);return g.update(t),g};var d=h.prototype;d.pickSlots=1,d.setPickBase=function(t){this.pickId=t},d.isTransparent=function(){if(this.opacity<1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]<1)return!0;return!1},d.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]>=1)return!0;return!1};var p=[0,0],m=[0,0,0],v=[0,0,0],g=[0,0,0,1],y=[0,0,0,1],b=c.slice(),x=[0,0,0],_=[[0,0,0],[0,0,0]];function w(t){return t[0]=t[1]=t[2]=0,t}function M(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=1,t}function k(t,e,r,n){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[r]=n,t}function A(t,e,r,n,i){var a,s=e.axesProject,l=e.gl,u=t.uniforms,h=r.model||c,d=r.view||c,A=r.projection||c,T=e.axesBounds,E=function(t){for(var e=_,r=0;r<2;++r)for(var n=0;n<3;++n)e[r][n]=Math.max(Math.min(t[r][n],1e8),-1e8);return e}(e.clipBounds);a=e.axes&&e.axes.lastCubeProps?e.axes.lastCubeProps.axis:[1,1,1],p[0]=2/l.drawingBufferWidth,p[1]=2/l.drawingBufferHeight,t.bind(),u.view=d,u.projection=A,u.screenSize=p,u.highlightId=e.highlightId,u.highlightScale=e.highlightScale,u.clipBounds=E,u.pickGroup=e.pickId/255,u.pixelRatio=e.pixelRatio;for(var S=0;S<3;++S)if(s[S]&&e.projectOpacity[S]<1===n){u.scale=e.projectScale[S],u.opacity=e.projectOpacity[S];for(var L=b,C=0;C<16;++C)L[C]=0;for(C=0;C<4;++C)L[5*C]=1;L[5*S]=0,a[S]<0?L[12+S]=T[0][S]:L[12+S]=T[1][S],o(L,h,L),u.model=L;var P=(S+1)%3,z=(S+2)%3,O=w(m),D=w(v);O[P]=1,D[z]=1;var I=f(0,0,0,M(g,O)),R=f(0,0,0,M(y,D));if(Math.abs(I[1])>Math.abs(R[1])){var N=I;I=R,R=N,N=O,O=D,D=N;var F=P;P=z,z=F}I[0]<0&&(O[P]=-1),R[1]>0&&(D[z]=-1);var j=0,B=0;for(C=0;C<4;++C)j+=Math.pow(h[4*P+C],2),B+=Math.pow(h[4*z+C],2);O[P]/=Math.sqrt(j),D[z]/=Math.sqrt(B),u.axes[0]=O,u.axes[1]=D,u.fragClipBounds[0]=k(x,E[0],S,-1e8),u.fragClipBounds[1]=k(x,E[1],S,1e8),e.vao.draw(l.TRIANGLES,e.vertexCount),e.lineWidth>0&&(l.lineWidth(e.lineWidth),e.vao.draw(l.LINES,e.lineVertexCount,e.vertexCount))}}var T=[[-1e8,-1e8,-1e8],[1e8,1e8,1e8]];function E(t,e,r,n,i,a){var o=r.gl;if(r.vao.bind(),i===r.opacity<1||a){t.bind();var s=t.uniforms;s.model=n.model||c,s.view=n.view||c,s.projection=n.projection||c,p[0]=2/o.drawingBufferWidth,p[1]=2/o.drawingBufferHeight,s.screenSize=p,s.highlightId=r.highlightId,s.highlightScale=r.highlightScale,s.fragClipBounds=T,s.clipBounds=r.axes.bounds,s.opacity=r.opacity,s.pickGroup=r.pickId/255,s.pixelRatio=r.pixelRatio,r.vao.draw(o.TRIANGLES,r.vertexCount),r.lineWidth>0&&(o.lineWidth(r.lineWidth),r.vao.draw(o.LINES,r.lineVertexCount,r.vertexCount))}A(e,r,n,i),r.vao.unbind()}d.draw=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!1,!1)},d.drawTransparent=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!0,!1)},d.drawPick=function(t){E(this.useOrtho?this.pickOrthoShader:this.pickPerspectiveShader,this.pickProjectShader,this,t,!1,!0)},d.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=t.value[2]+(t.value[1]<<8)+(t.value[0]<<16);if(e>=this.pointCount||e<0)return null;var r=this.points[e],n=this._selectResult;n.index=e;for(var i=0;i<3;++i)n.position[i]=n.dataCoordinate[i]=r[i];return n},d.highlight=function(t){if(t){var e=t.index,r=255&e,n=e>>8&255,i=e>>16&255;this.highlightId=[r/255,n/255,i/255,0]}else this.highlightId=[1,1,1,1]},d.update=function(t){if("perspective"in(t=t||{})&&(this.useOrtho=!t.perspective),"orthographic"in t&&(this.useOrtho=!!t.orthographic),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"project"in t)if(Array.isArray(t.project))this.axesProject=t.project;else{var e=!!t.project;this.axesProject=[e,e,e]}if("projectScale"in t)if(Array.isArray(t.projectScale))this.projectScale=t.projectScale.slice();else{var r=+t.projectScale;this.projectScale=[r,r,r]}if("projectOpacity"in t)if(Array.isArray(t.projectOpacity))this.projectOpacity=t.projectOpacity.slice();else{r=+t.projectOpacity;this.projectOpacity=[r,r,r]}"opacity"in t&&(this.opacity=t.opacity),this.dirty=!0;var n=t.position;if(n){var i=t.font||"normal",o=t.alignment||[0,0],s=[1/0,1/0,1/0],c=[-1/0,-1/0,-1/0],u=t.glyph,f=t.color,h=t.size,d=t.angle,p=t.lineColor,m=0,v=0,g=0,y=n.length;t:for(var b=0;b<y;++b){for(var x=n[b],_=0;_<3;++_)if(isNaN(x[_])||!isFinite(x[_]))continue t;var w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];v+=3*w.cells.length,g+=2*M.edges.length}var A=v+g,T=a.mallocFloat(3*A),E=a.mallocFloat(4*A),S=a.mallocFloat(2*A),L=a.mallocUint32(A),C=[0,o[1]],P=0,z=v,O=[0,0,0,1],D=[0,0,0,1],I=Array.isArray(f)&&Array.isArray(f[0]),R=Array.isArray(p)&&Array.isArray(p[0]);t:for(b=0;b<y;++b){var N;for(x=n[b],_=0;_<3;++_){if(isNaN(x[_])||!isFinite(x[_])){m+=1;continue t}c[_]=Math.max(c[_],x[_]),s[_]=Math.min(s[_],x[_])}var F;w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];if(Array.isArray(f)){if(3===(F=I?f[b]:f).length){for(_=0;_<3;++_)O[_]=F[_];O[3]=1}else if(4===F.length)for(_=0;_<4;++_)O[_]=F[_]}else 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l=s[0]+(n[0]-o[0])/(o[2]-o[0])*(s[2]-s[0]),c=s[1]+(n[1]-o[1])/(o[3]-o[1])*(s[3]-s[1]);t[0]&&a.drawLine(l,c,s[0],c,e[0],r[0]),t[1]&&a.drawLine(l,c,l,s[1],e[1],r[1]),t[2]&&a.drawLine(l,c,s[2],c,e[2],r[2]),t[3]&&a.drawLine(l,c,l,s[3],e[3],r[3])}},i.dispose=function(){this.plot.removeOverlay(this)}},{}],228:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, color;\nattribute float weight;\n\nuniform mat4 model, view, projection;\nuniform vec3 coordinates[3];\nuniform vec4 colors[3];\nuniform vec2 screenShape;\nuniform float lineWidth;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vertexPosition = mix(coordinates[0],\n    mix(coordinates[2], coordinates[1], 0.5 * (position + 1.0)), abs(position));\n\n  vec4 clipPos = projection * view * model * vec4(vertexPosition, 1.0);\n  vec2 clipOffset = (projection * view * model * vec4(color, 0.0)).xy;\n  vec2 delta = weight * clipOffset * screenShape;\n  vec2 lineOffset = normalize(vec2(delta.y, -delta.x)) / screenShape;\n\n  gl_Position   = vec4(clipPos.xy + clipPos.w * 0.5 * lineWidth * lineOffset, clipPos.z, clipPos.w);\n  fragColor     = color.x * colors[0] + color.y * colors[1] + color.z * colors[2];\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragColor;\n\nvoid main() {\n  gl_FragColor = fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec3"},{name:"weight",type:"float"}])}},{"gl-shader":220,glslify:253}],229:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders/index");e.exports=function(t,e){var r=[];function o(t,e,n,i,a,o){var 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vec3 lowerBound, upperBound;\nuniform float contourTint;\nuniform vec4 contourColor;\nuniform sampler2D colormap;\nuniform vec3 clipBounds[2];\nuniform float roughness, fresnel, kambient, kdiffuse, kspecular, opacity;\nuniform float vertexColor;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec3 lightDirection, eyeDirection, surfaceNormal;\nvarying vec4 vColor;\n\nvoid main() {\n  if (kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(surfaceNormal);\n  vec3 V = normalize(eyeDirection);\n  vec3 L = normalize(lightDirection);\n\n  if(gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = max(beckmannSpecular(L, V, N, roughness), 0.);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  //decide how to interpolate color \u2014 in vertex or in fragment\n  vec4 surfaceColor = step(vertexColor, .5) * texture2D(colormap, 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planeCoordinate = uv.zw;\n\n  vColor = texture2D(colormap, vec2(value, value));\n\n  //Don't do lighting for contours\n  surfaceNormal   = vec3(1,0,0);\n  eyeDirection    = vec3(0,1,0);\n  lightDirection  = vec3(0,0,1);\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec2 shape;\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec2 planeCoordinate;\nvarying vec3 surfaceNormal;\n\nvec2 splitFloat(float v) {\n  float vh = 255.0 * v;\n  float upper = floor(vh);\n  float lower = fract(vh);\n  return vec2(upper / 255.0, floor(lower * 16.0) / 16.0);\n}\n\nvoid main() {\n  if(kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n  vec2 ux = splitFloat(planeCoordinate.x / shape.x);\n  vec2 uy = splitFloat(planeCoordinate.y / shape.y);\n  gl_FragColor = vec4(pickId, ux.x, uy.x, ux.y + 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n=t("bit-twiddle"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("typedarray-pool"),l=t("colormap"),c=t("ndarray-ops"),u=t("ndarray-pack"),f=t("ndarray"),h=t("surface-nets"),d=t("gl-mat4/multiply"),p=t("gl-mat4/invert"),m=t("binary-search-bounds"),v=t("ndarray-gradient"),g=t("./lib/shaders"),y=g.createShader,b=g.createContourShader,x=g.createPickShader,_=g.createPickContourShader,w=40,M=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1],k=[[0,0],[0,1],[1,0],[1,1],[1,0],[0,1]],A=[[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0]];!function(){for(var t=0;t<3;++t){var e=A[t],r=(t+2)%3;e[(t+1)%3+0]=1,e[r+3]=1,e[t+6]=1}}();var T=256;function E(t,e,r,n,i,a,o,l,c,u,h,d,p,m){this.gl=t,this.shape=e,this.bounds=r,this.intensityBounds=[],this._shader=n,this._pickShader=i,this._coordinateBuffer=a,this._vao=o,this._colorMap=l,this._contourShader=c,this._contourPickShader=u,this._contourBuffer=h,this._contourVAO=d,this._contourOffsets=[[],[],[]],this._contourCounts=[[],[],[]],this._vertexCount=0,this._pickResult=new function(t,e,r,n,i){this.position=t,this.index=e,this.uv=r,this.level=n,this.dataCoordinate=i}([0,0,0],[0,0],[0,0],[0,0,0],[0,0,0]),this._dynamicBuffer=p,this._dynamicVAO=m,this._dynamicOffsets=[0,0,0],this._dynamicCounts=[0,0,0],this.contourWidth=[1,1,1],this.contourLevels=[[1],[1],[1]],this.contourTint=[0,0,0],this.contourColor=[[.5,.5,.5,1],[.5,.5,.5,1],[.5,.5,.5,1]],this.showContour=!0,this.showSurface=!0,this.enableHighlight=[!0,!0,!0],this.highlightColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.highlightTint=[1,1,1],this.highlightLevel=[-1,-1,-1],this.enableDynamic=[!0,!0,!0],this.dynamicLevel=[NaN,NaN,NaN],this.dynamicColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.dynamicTint=[1,1,1],this.dynamicWidth=[1,1,1],this.axesBounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.surfaceProject=[!1,!1,!1],this.contourProject=[[!1,!1,!1],[!1,!1,!1],[!1,!1,!1]],this.colorBounds=[!1,!1],this._field=[f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0])],this.pickId=1,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.snapToData=!1,this.opacity=1,this.lightPosition=[10,1e4,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.vertexColor=0,this.dirty=!0}var S=E.prototype;S.isTransparent=function(){return this.opacity<1},S.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this._contourCounts[t].length>0||this._dynamicCounts[t]>0)return!0;return!1},S.pickSlots=1,S.setPickBase=function(t){this.pickId=t};var L=[0,0,0],C={showSurface:!1,showContour:!1,projections:[M.slice(),M.slice(),M.slice()],clipBounds:[[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]]]};function P(t,e){var r,n,i,a=e.axes&&e.axes.lastCubeProps.axis||L,o=e.showSurface,s=e.showContour;for(r=0;r<3;++r)for(o=o||e.surfaceProject[r],n=0;n<3;++n)s=s||e.contourProject[r][n];for(r=0;r<3;++r){var l=C.projections[r];for(n=0;n<16;++n)l[n]=0;for(n=0;n<4;++n)l[5*n]=1;l[5*r]=0,l[12+r]=e.axesBounds[+(a[r]>0)][r],d(l,t.model,l);var c=C.clipBounds[r];for(i=0;i<2;++i)for(n=0;n<3;++n)c[i][n]=t.clipBounds[i][n];c[0][r]=-1e8,c[1][r]=1e8}return C.showSurface=o,C.showContour=s,C}var z={model:M,view:M,projection:M,inverseModel:M.slice(),lowerBound:[0,0,0],upperBound:[0,0,0],colorMap:0,clipBounds:[[0,0,0],[0,0,0]],height:0,contourTint:0,contourColor:[0,0,0,1],permutation:[1,0,0,0,1,0,0,0,1],zOffset:-1e-4,kambient:1,kdiffuse:1,kspecular:1,lightPosition:[1e3,1e3,1e3],eyePosition:[0,0,0],roughness:1,fresnel:1,opacity:1,vertexColor:0},O=M.slice(),D=[1,0,0,0,1,0,0,0,1];function I(t,e){t=t||{};var r=this.gl;r.disable(r.CULL_FACE),this._colorMap.bind(0);var n=z;n.model=t.model||M,n.view=t.view||M,n.projection=t.projection||M,n.lowerBound=[this.bounds[0][0],this.bounds[0][1],this.colorBounds[0]||this.bounds[0][2]],n.upperBound=[this.bounds[1][0],this.bounds[1][1],this.colorBounds[1]||this.bounds[1][2]],n.contourColor=this.contourColor[0],n.inverseModel=p(n.inverseModel,n.model);for(var i=0;i<2;++i)for(var a=n.clipBounds[i],o=0;o<3;++o)a[o]=Math.min(Math.max(this.clipBounds[i][o],-1e8),1e8);n.kambient=this.ambientLight,n.kdiffuse=this.diffuseLight,n.kspecular=this.specularLight,n.roughness=this.roughness,n.fresnel=this.fresnel,n.opacity=this.opacity,n.height=0,n.permutation=D,n.vertexColor=this.vertexColor;var s=O;for(d(s,n.view,n.model),d(s,n.projection,s),p(s,s),i=0;i<3;++i)n.eyePosition[i]=s[12+i]/s[15];var l=s[15];for(i=0;i<3;++i)l+=this.lightPosition[i]*s[4*i+3];for(i=0;i<3;++i){var c=s[12+i];for(o=0;o<3;++o)c+=s[4*o+i]*this.lightPosition[o];n.lightPosition[i]=c/l}var u=P(n,this);if(u.showSurface&&e===this.opacity<1){for(this._shader.bind(),this._shader.uniforms=n,this._vao.bind(),this.showSurface&&this._vertexCount&&this._vao.draw(r.TRIANGLES,this._vertexCount),i=0;i<3;++i)this.surfaceProject[i]&&this.vertexCount&&(this._shader.uniforms.model=u.projections[i],this._shader.uniforms.clipBounds=u.clipBounds[i],this._vao.draw(r.TRIANGLES,this._vertexCount));this._vao.unbind()}if(u.showContour&&!e){var f=this._contourShader;n.kambient=1,n.kdiffuse=0,n.kspecular=0,n.opacity=1,f.bind(),f.uniforms=n;var h=this._contourVAO;for(h.bind(),i=0;i<3;++i)for(f.uniforms.permutation=A[i],r.lineWidth(this.contourWidth[i]),o=0;o<this.contourLevels[i].length;++o)this._contourCounts[i][o]&&(o===this.highlightLevel[i]?(f.uniforms.contourColor=this.highlightColor[i],f.uniforms.contourTint=this.highlightTint[i]):0!==o&&o-1!==this.highlightLevel[i]||(f.uniforms.contourColor=this.contourColor[i],f.uniforms.contourTint=this.contourTint[i]),f.uniforms.height=this.contourLevels[i][o],h.draw(r.LINES,this._contourCounts[i][o],this._contourOffsets[i][o]));for(i=0;i<3;++i)for(f.uniforms.model=u.projections[i],f.uniforms.clipBounds=u.clipBounds[i],o=0;o<3;++o)if(this.contourProject[i][o]){f.uniforms.permutation=A[o],r.lineWidth(this.contourWidth[o]);for(var m=0;m<this.contourLevels[o].length;++m)m===this.highlightLevel[o]?(f.uniforms.contourColor=this.highlightColor[o],f.uniforms.contourTint=this.highlightTint[o]):0!==m&&m-1!==this.highlightLevel[o]||(f.uniforms.contourColor=this.contourColor[o],f.uniforms.contourTint=this.contourTint[o]),f.uniforms.height=this.contourLevels[o][m],h.draw(r.LINES,this._contourCounts[o][m],this._contourOffsets[o][m])}for(h.unbind(),(h=this._dynamicVAO).bind(),i=0;i<3;++i)if(0!==this._dynamicCounts[i])for(f.uniforms.model=n.model,f.uniforms.clipBounds=n.clipBounds,f.uniforms.permutation=A[i],r.lineWidth(this.dynamicWidth[i]),f.uniforms.contourColor=this.dynamicColor[i],f.uniforms.contourTint=this.dynamicTint[i],f.uniforms.height=this.dynamicLevel[i],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]),o=0;o<3;++o)this.contourProject[o][i]&&(f.uniforms.model=u.projections[o],f.uniforms.clipBounds=u.clipBounds[o],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]));h.unbind()}}S.draw=function(t){return I.call(this,t,!1)},S.drawTransparent=function(t){return I.call(this,t,!0)};var R={model:M,view:M,projection:M,inverseModel:M,clipBounds:[[0,0,0],[0,0,0]],height:0,shape:[0,0],pickId:0,lowerBound:[0,0,0],upperBound:[0,0,0],zOffset:0,permutation:[1,0,0,0,1,0,0,0,1],lightPosition:[0,0,0],eyePosition:[0,0,0]};function N(t,e){var r=e.shape.slice(),n=t.shape.slice();c.assign(t.lo(1,1).hi(r[0],r[1]),e),c.assign(t.lo(1).hi(r[0],1),e.hi(r[0],1)),c.assign(t.lo(1,n[1]-1).hi(r[0],1),e.lo(0,r[1]-1).hi(r[0],1)),c.assign(t.lo(0,1).hi(1,r[1]),e.hi(1)),c.assign(t.lo(n[0]-1,1).hi(1,r[1]),e.lo(r[0]-1)),t.set(0,0,e.get(0,0)),t.set(0,n[1]-1,e.get(0,r[1]-1)),t.set(n[0]-1,0,e.get(r[0]-1,0)),t.set(n[0]-1,n[1]-1,e.get(r[0]-1,r[1]-1))}function F(t,e){return Array.isArray(t)?[e(t[0]),e(t[1]),e(t[2])]:[e(t),e(t),e(t)]}function j(t){return Array.isArray(t)?3===t.length?[t[0],t[1],t[2],1]:[t[0],t[1],t[2],t[3]]:[0,0,0,1]}function B(t){if(Array.isArray(t)){if(Array.isArray(t))return[j(t[0]),j(t[1]),j(t[2])];var e=j(t);return[e.slice(),e.slice(),e.slice()]}}S.drawPick=function(t){t=t||{};var e=this.gl;e.disable(e.CULL_FACE);var r=R;r.model=t.model||M,r.view=t.view||M,r.projection=t.projection||M,r.shape=this._field[2].shape,r.pickId=this.pickId/255,r.lowerBound=this.bounds[0],r.upperBound=this.bounds[1],r.permutation=D;for(var n=0;n<2;++n)for(var i=r.clipBounds[n],a=0;a<3;++a)i[a]=Math.min(Math.max(this.clipBounds[n][a],-1e8),1e8);var o=P(r,this);if(o.showSurface){for(this._pickShader.bind(),this._pickShader.uniforms=r,this._vao.bind(),this._vao.draw(e.TRIANGLES,this._vertexCount),n=0;n<3;++n)this.surfaceProject[n]&&(this._pickShader.uniforms.model=o.projections[n],this._pickShader.uniforms.clipBounds=o.clipBounds[n],this._vao.draw(e.TRIANGLES,this._vertexCount));this._vao.unbind()}if(o.showContour){var s=this._contourPickShader;s.bind(),s.uniforms=r;var l=this._contourVAO;for(l.bind(),a=0;a<3;++a)for(e.lineWidth(this.contourWidth[a]),s.uniforms.permutation=A[a],n=0;n<this.contourLevels[a].length;++n)this._contourCounts[a][n]&&(s.uniforms.height=this.contourLevels[a][n],l.draw(e.LINES,this._contourCounts[a][n],this._contourOffsets[a][n]));for(n=0;n<3;++n)for(s.uniforms.model=o.projections[n],s.uniforms.clipBounds=o.clipBounds[n],a=0;a<3;++a)if(this.contourProject[n][a]){s.uniforms.permutation=A[a],e.lineWidth(this.contourWidth[a]);for(var c=0;c<this.contourLevels[a].length;++c)this._contourCounts[a][c]&&(s.uniforms.height=this.contourLevels[a][c],l.draw(e.LINES,this._contourCounts[a][c],this._contourOffsets[a][c]))}l.unbind()}},S.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=this._field[2].shape,r=this._pickResult,n=e[0]*(t.value[0]+(t.value[2]>>4)/16)/255,i=Math.floor(n),a=n-i,o=e[1]*(t.value[1]+(15&t.value[2])/16)/255,s=Math.floor(o),l=o-s;i+=1,s+=1;var c=r.position;c[0]=c[1]=c[2]=0;for(var u=0;u<2;++u)for(var f=u?a:1-a,h=0;h<2;++h)for(var d=i+u,p=s+h,v=f*(h?l:1-l),g=0;g<3;++g)c[g]+=this._field[g].get(d,p)*v;for(var y=this._pickResult.level,b=0;b<3;++b)if(y[b]=m.le(this.contourLevels[b],c[b]),y[b]<0)this.contourLevels[b].length>0&&(y[b]=0);else if(y[b]<this.contourLevels[b].length-1){var x=this.contourLevels[b][y[b]],_=this.contourLevels[b][y[b]+1];Math.abs(x-c[b])>Math.abs(_-c[b])&&(y[b]+=1)}for(r.index[0]=a<.5?i:i+1,r.index[1]=l<.5?s:s+1,r.uv[0]=n/e[0],r.uv[1]=o/e[1],g=0;g<3;++g)r.dataCoordinate[g]=this._field[g].get(r.index[0],r.index[1]);return r},S.update=function(t){t=t||{},this.dirty=!0,"contourWidth"in t&&(this.contourWidth=F(t.contourWidth,Number)),"showContour"in t&&(this.showContour=F(t.showContour,Boolean)),"showSurface"in t&&(this.showSurface=!!t.showSurface),"contourTint"in t&&(this.contourTint=F(t.contourTint,Boolean)),"contourColor"in t&&(this.contourColor=B(t.contourColor)),"contourProject"in t&&(this.contourProject=F(t.contourProject,function(t){return F(t,Boolean)})),"surfaceProject"in t&&(this.surfaceProject=t.surfaceProject),"dynamicColor"in t&&(this.dynamicColor=B(t.dynamicColor)),"dynamicTint"in t&&(this.dynamicTint=F(t.dynamicTint,Number)),"dynamicWidth"in t&&(this.dynamicWidth=F(t.dynamicWidth,Number)),"opacity"in t&&(this.opacity=t.opacity),"colorBounds"in t&&(this.colorBounds=t.colorBounds),"vertexColor"in t&&(this.vertexColor=t.vertexColor?1:0);var e=t.field||t.coords&&t.coords[2]||null,r=!1;if(e||(e=this._field[2].shape[0]||this._field[2].shape[2]?this._field[2].lo(1,1).hi(this._field[2].shape[0]-2,this._field[2].shape[1]-2):this._field[2].hi(0,0)),"field"in t||"coords"in t){var i=(e.shape[0]+2)*(e.shape[1]+2);i>this._field[2].data.length&&(s.freeFloat(this._field[2].data),this._field[2].data=s.mallocFloat(n.nextPow2(i))),this._field[2]=f(this._field[2].data,[e.shape[0]+2,e.shape[1]+2]),N(this._field[2],e),this.shape=e.shape.slice();for(var a=this.shape,o=0;o<2;++o)this._field[2].size>this._field[o].data.length&&(s.freeFloat(this._field[o].data),this._field[o].data=s.mallocFloat(this._field[2].size)),this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2]);if(t.coords){var d=t.coords;if(!Array.isArray(d)||3!==d.length)throw new Error("gl-surface: invalid coordinates for x/y");for(o=0;o<2;++o){var p=d[o];for(x=0;x<2;++x)if(p.shape[x]!==a[x])throw new Error("gl-surface: coords have incorrect shape");N(this._field[o],p)}}else if(t.ticks){var m=t.ticks;if(!Array.isArray(m)||2!==m.length)throw new Error("gl-surface: invalid ticks");for(o=0;o<2;++o){var g=m[o];if((Array.isArray(g)||g.length)&&(g=f(g)),g.shape[0]!==a[o])throw new Error("gl-surface: invalid tick length");var y=f(g.data,a);y.stride[o]=g.stride[0],y.stride[1^o]=0,N(this._field[o],y)}}else{for(o=0;o<2;++o){var b=[0,0];b[o]=1,this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2],b,0)}this._field[0].set(0,0,0);for(var x=0;x<a[0];++x)this._field[0].set(x+1,0,x);for(this._field[0].set(a[0]+1,0,a[0]-1),this._field[1].set(0,0,0),x=0;x<a[1];++x)this._field[1].set(0,x+1,x);this._field[1].set(0,a[1]+1,a[1]-1)}var _=this._field,w=f(s.mallocFloat(3*_[2].size*2),[3,a[0]+2,a[1]+2,2]);for(o=0;o<3;++o)v(w.pick(o),_[o],"mirror");var M=f(s.mallocFloat(3*_[2].size),[a[0]+2,a[1]+2,3]);for(o=0;o<a[0]+2;++o)for(x=0;x<a[1]+2;++x){var A=w.get(0,o,x,0),E=w.get(0,o,x,1),S=w.get(1,o,x,0),L=w.get(1,o,x,1),C=w.get(2,o,x,0),P=w.get(2,o,x,1),z=S*P-L*C,O=C*E-P*A,D=A*L-E*S,I=Math.sqrt(z*z+O*O+D*D);I<1e-8?(I=Math.max(Math.abs(z),Math.abs(O),Math.abs(D)))<1e-8?(D=1,O=z=0,I=1):I=1/I:I=1/Math.sqrt(I),M.set(o,x,0,z*I),M.set(o,x,1,O*I),M.set(o,x,2,D*I)}s.free(w.data);var R=[1/0,1/0,1/0],j=[-1/0,-1/0,-1/0],U=1/0,V=-1/0,q=(a[0]-1)*(a[1]-1)*6,H=s.mallocFloat(n.nextPow2(10*q)),G=0,Y=0;for(o=0;o<a[0]-1;++o)t:for(x=0;x<a[1]-1;++x){for(var W=0;W<2;++W)for(var X=0;X<2;++X)for(var Z=0;Z<3;++Z){var J=this._field[Z].get(1+o+W,1+x+X);if(isNaN(J)||!isFinite(J))continue t}for(Z=0;Z<6;++Z){var K=o+k[Z][0],Q=x+k[Z][1],$=this._field[0].get(K+1,Q+1),tt=this._field[1].get(K+1,Q+1),et=J=this._field[2].get(K+1,Q+1);z=M.get(K+1,Q+1,0),O=M.get(K+1,Q+1,1),D=M.get(K+1,Q+1,2),t.intensity&&(et=t.intensity.get(K,Q)),H[G++]=K,H[G++]=Q,H[G++]=$,H[G++]=tt,H[G++]=J,H[G++]=0,H[G++]=et,H[G++]=z,H[G++]=O,H[G++]=D,R[0]=Math.min(R[0],$),R[1]=Math.min(R[1],tt),R[2]=Math.min(R[2],J),U=Math.min(U,et),j[0]=Math.max(j[0],$),j[1]=Math.max(j[1],tt),j[2]=Math.max(j[2],J),V=Math.max(V,et),Y+=1}}for(t.intensityBounds&&(U=+t.intensityBounds[0],V=+t.intensityBounds[1]),o=6;o<G;o+=10)H[o]=(H[o]-U)/(V-U);this._vertexCount=Y,this._coordinateBuffer.update(H.subarray(0,G)),s.freeFloat(H),s.free(M.data),this.bounds=[R,j],this.intensity=t.intensity||this._field[2],this.intensityBounds[0]===U&&this.intensityBounds[1]===V||(r=!0),this.intensityBounds=[U,V]}if("levels"in t){var rt=t.levels;for(rt=Array.isArray(rt[0])?rt.slice():[[],[],rt],o=0;o<3;++o)rt[o]=rt[o].slice(),rt.sort(function(t,e){return t-e});t:for(o=0;o<3;++o){if(rt[o].length!==this.contourLevels[o].length){r=!0;break}for(x=0;x<rt[o].length;++x)if(rt[o][x]!==this.contourLevels[o][x]){r=!0;break t}}this.contourLevels=rt}if(r){_=this._field,a=this.shape;for(var nt=[],it=0;it<3;++it){rt=this.contourLevels[it];var at=[],ot=[],st=[0,0,0];for(o=0;o<rt.length;++o){var lt=h(this._field[it],rt[o]);at.push(nt.length/5|0),Y=0;t:for(x=0;x<lt.cells.length;++x){var ct=lt.cells[x];for(Z=0;Z<2;++Z){var ut=lt.positions[ct[Z]],ft=ut[0],ht=0|Math.floor(ft),dt=ft-ht,pt=ut[1],mt=0|Math.floor(pt),vt=pt-mt,gt=!1;e:for(var yt=0;yt<3;++yt){st[yt]=0;var bt=(it+yt+1)%3;for(W=0;W<2;++W){var xt=W?dt:1-dt;for(K=0|Math.min(Math.max(ht+W,0),a[0]),X=0;X<2;++X){var _t=X?vt:1-vt;if(Q=0|Math.min(Math.max(mt+X,0),a[1]),J=yt<2?this._field[bt].get(K,Q):(this.intensity.get(K,Q)-this.intensityBounds[0])/(this.intensityBounds[1]-this.intensityBounds[0]),!isFinite(J)||isNaN(J)){gt=!0;break e}var wt=xt*_t;st[yt]+=wt*J}}}if(gt){if(Z>0){for(var Mt=0;Mt<5;++Mt)nt.pop();Y-=1}continue t}nt.push(st[0],st[1],ut[0],ut[1],st[2]),Y+=1}}ot.push(Y)}this._contourOffsets[it]=at,this._contourCounts[it]=ot}var kt=s.mallocFloat(nt.length);for(o=0;o<nt.length;++o)kt[o]=nt[o];this._contourBuffer.update(kt),s.freeFloat(kt)}t.colormap&&this._colorMap.setPixels(function(t){var e=u([l({colormap:t,nshades:T,format:"rgba"}).map(function(t){return[t[0],t[1],t[2],255*t[3]]})]);return c.divseq(e,255),e}(t.colormap))},S.dispose=function(){this._shader.dispose(),this._vao.dispose(),this._coordinateBuffer.dispose(),this._colorMap.dispose(),this._contourBuffer.dispose(),this._contourVAO.dispose(),this._contourShader.dispose(),this._contourPickShader.dispose(),this._dynamicBuffer.dispose(),this._dynamicVAO.dispose();for(var t=0;t<3;++t)s.freeFloat(this._field[t].data)},S.highlight=function(t){if(!t)return this._dynamicCounts=[0,0,0],this.dyanamicLevel=[NaN,NaN,NaN],void(this.highlightLevel=[-1,-1,-1]);for(var e=0;e<3;++e)this.enableHighlight[e]?this.highlightLevel[e]=t.level[e]:this.highlightLevel[e]=-1;var r;if(r=this.snapToData?t.dataCoordinate:t.position,this.enableDynamic[0]&&r[0]!==this.dynamicLevel[0]||this.enableDynamic[1]&&r[1]!==this.dynamicLevel[1]||this.enableDynamic[2]&&r[2]!==this.dynamicLevel[2]){for(var n=0,i=this.shape,a=s.mallocFloat(12*i[0]*i[1]),o=0;o<3;++o)if(this.enableDynamic[o]){this.dynamicLevel[o]=r[o];var l=(o+1)%3,c=(o+2)%3,u=this._field[o],f=this._field[l],d=this._field[c],p=(this.intensity,h(u,r[o])),m=p.cells,v=p.positions;for(this._dynamicOffsets[o]=n,e=0;e<m.length;++e)for(var g=m[e],y=0;y<2;++y){var b=v[g[y]],x=+b[0],_=0|x,w=0|Math.min(_+1,i[0]),M=x-_,k=1-M,A=+b[1],T=0|A,E=0|Math.min(T+1,i[1]),S=A-T,L=1-S,C=k*L,P=k*S,z=M*L,O=M*S,D=C*f.get(_,T)+P*f.get(_,E)+z*f.get(w,T)+O*f.get(w,E),I=C*d.get(_,T)+P*d.get(_,E)+z*d.get(w,T)+O*d.get(w,E);if(isNaN(D)||isNaN(I)){y&&(n-=1);break}a[2*n+0]=D,a[2*n+1]=I,n+=1}this._dynamicCounts[o]=n-this._dynamicOffsets[o]}else this.dynamicLevel[o]=NaN,this._dynamicCounts[o]=0;this._dynamicBuffer.update(a.subarray(0,2*n)),s.freeFloat(a)}}},{"./lib/shaders":230,"binary-search-bounds":70,"bit-twiddle":71,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-texture2d":233,"gl-vao":237,ndarray:439,"ndarray-gradient":430,"ndarray-ops":433,"ndarray-pack":434,"surface-nets":520,"typedarray-pool":534}],233:[function(t,e,r){"use strict";var n=t("ndarray"),i=t("ndarray-ops"),a=t("typedarray-pool");e.exports=function(t){if(arguments.length<=1)throw new Error("gl-texture2d: Missing arguments for texture2d constructor");o||function(t){o=[t.LINEAR,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_NEAREST],s=[t.NEAREST,t.LINEAR,t.NEAREST_MIPMAP_NEAREST,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_LINEAR],l=[t.REPEAT,t.CLAMP_TO_EDGE,t.MIRRORED_REPEAT]}(t);if("number"==typeof arguments[1])return v(t,arguments[1],arguments[2],arguments[3]||t.RGBA,arguments[4]||t.UNSIGNED_BYTE);if(Array.isArray(arguments[1]))return v(t,0|arguments[1][0],0|arguments[1][1],arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if("object"==typeof arguments[1]){var e=arguments[1],r=c(e)?e:e.raw;if(r)return function(t,e,r,n,i,a){var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,i,i,a,e),new h(t,o,r,n,i,a)}(t,r,0|e.width,0|e.height,arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if(e.shape&&e.data&&e.stride)return function(t,e){var r=e.dtype,o=e.shape.slice(),s=t.getParameter(t.MAX_TEXTURE_SIZE);if(o[0]<0||o[0]>s||o[1]<0||o[1]>s)throw new Error("gl-texture2d: Invalid texture size");var l=p(o,e.stride.slice()),c=0;"float32"===r?c=t.FLOAT:"float64"===r?(c=t.FLOAT,l=!1,r="float32"):"uint8"===r?c=t.UNSIGNED_BYTE:(c=t.UNSIGNED_BYTE,l=!1,r="uint8");var f,d,v=0;if(2===o.length)v=t.LUMINANCE,o=[o[0],o[1],1],e=n(e.data,o,[e.stride[0],e.stride[1],1],e.offset);else{if(3!==o.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===o[2])v=t.ALPHA;else if(2===o[2])v=t.LUMINANCE_ALPHA;else if(3===o[2])v=t.RGB;else{if(4!==o[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}}c!==t.FLOAT||t.getExtension("OES_texture_float")||(c=t.UNSIGNED_BYTE,l=!1);var g=e.size;if(l)f=0===e.offset&&e.data.length===g?e.data:e.data.subarray(e.offset,e.offset+g);else{var y=[o[2],o[2]*o[0],1];d=a.malloc(g,r);var b=n(d,o,y,0);"float32"!==r&&"float64"!==r||c!==t.UNSIGNED_BYTE?i.assign(b,e):u(b,e),f=d.subarray(0,g)}var x=m(t);t.texImage2D(t.TEXTURE_2D,0,v,o[0],o[1],0,v,c,f),l||a.free(d);return new h(t,x,o[0],o[1],v,c)}(t,e)}throw new Error("gl-texture2d: Invalid arguments for texture2d constructor")};var o=null,s=null,l=null;function c(t){return"undefined"!=typeof HTMLCanvasElement&&t instanceof HTMLCanvasElement||"undefined"!=typeof HTMLImageElement&&t instanceof HTMLImageElement||"undefined"!=typeof HTMLVideoElement&&t instanceof HTMLVideoElement||"undefined"!=typeof ImageData&&t instanceof ImageData}var u=function(t,e){i.muls(t,e,255)};function f(t,e,r){var n=t.gl,i=n.getParameter(n.MAX_TEXTURE_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-texture2d: Invalid texture size");return t._shape=[e,r],t.bind(),n.texImage2D(n.TEXTURE_2D,0,t.format,e,r,0,t.format,t.type,null),t._mipLevels=[0],t}function h(t,e,r,n,i,a){this.gl=t,this.handle=e,this.format=i,this.type=a,this._shape=[r,n],this._mipLevels=[0],this._magFilter=t.NEAREST,this._minFilter=t.NEAREST,this._wrapS=t.CLAMP_TO_EDGE,this._wrapT=t.CLAMP_TO_EDGE,this._anisoSamples=1;var o=this,s=[this._wrapS,this._wrapT];Object.defineProperties(s,[{get:function(){return o._wrapS},set:function(t){return o.wrapS=t}},{get:function(){return o._wrapT},set:function(t){return o.wrapT=t}}]),this._wrapVector=s;var l=[this._shape[0],this._shape[1]];Object.defineProperties(l,[{get:function(){return o._shape[0]},set:function(t){return o.width=t}},{get:function(){return o._shape[1]},set:function(t){return o.height=t}}]),this._shapeVector=l}var d=h.prototype;function p(t,e){return 3===t.length?1===e[2]&&e[1]===t[0]*t[2]&&e[0]===t[2]:1===e[0]&&e[1]===t[0]}function m(t){var e=t.createTexture();return t.bindTexture(t.TEXTURE_2D,e),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),e}function v(t,e,r,n,i){var a=t.getParameter(t.MAX_TEXTURE_SIZE);if(e<0||e>a||r<0||r>a)throw new Error("gl-texture2d: Invalid texture shape");if(i===t.FLOAT&&!t.getExtension("OES_texture_float"))throw new Error("gl-texture2d: Floating point textures not supported on this platform");var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,n,e,r,0,n,i,null),new h(t,o,e,r,n,i)}Object.defineProperties(d,{minFilter:{get:function(){return this._minFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MIN_FILTER,t),this._minFilter=t}},magFilter:{get:function(){return this._magFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MAG_FILTER,t),this._magFilter=t}},mipSamples:{get:function(){return this._anisoSamples},set:function(t){var e=this._anisoSamples;if(this._anisoSamples=0|Math.max(t,1),e!==this._anisoSamples){var r=this.gl.getExtension("EXT_texture_filter_anisotropic");r&&this.gl.texParameterf(this.gl.TEXTURE_2D,r.TEXTURE_MAX_ANISOTROPY_EXT,this._anisoSamples)}return this._anisoSamples}},wrapS:{get:function(){return this._wrapS},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_S,t),this._wrapS=t}},wrapT:{get:function(){return this._wrapT},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_T,t),this._wrapT=t}},wrap:{get:function(){return this._wrapVector},set:function(t){if(Array.isArray(t)||(t=[t,t]),2!==t.length)throw new Error("gl-texture2d: Must specify wrap mode for rows and columns");for(var e=0;e<2;++e)if(l.indexOf(t[e])<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);this._wrapS=t[0],this._wrapT=t[1];var r=this.gl;return this.bind(),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_S,this._wrapS),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_T,this._wrapT),t}},shape:{get:function(){return this._shapeVector},set:function(t){if(Array.isArray(t)){if(2!==t.length)throw new Error("gl-texture2d: Invalid texture shape")}else t=[0|t,0|t];return f(this,0|t[0],0|t[1]),[0|t[0],0|t[1]]}},width:{get:function(){return this._shape[0]},set:function(t){return f(this,t|=0,this._shape[1]),t}},height:{get:function(){return this._shape[1]},set:function(t){return t|=0,f(this,this._shape[0],t),t}}}),d.bind=function(t){var e=this.gl;return void 0!==t&&e.activeTexture(e.TEXTURE0+(0|t)),e.bindTexture(e.TEXTURE_2D,this.handle),void 0!==t?0|t:e.getParameter(e.ACTIVE_TEXTURE)-e.TEXTURE0},d.dispose=function(){this.gl.deleteTexture(this.handle)},d.generateMipmap=function(){this.bind(),this.gl.generateMipmap(this.gl.TEXTURE_2D);for(var t=Math.min(this._shape[0],this._shape[1]),e=0;t>0;++e,t>>>=1)this._mipLevels.indexOf(e)<0&&this._mipLevels.push(e)},d.setPixels=function(t,e,r,o){var s=this.gl;this.bind(),Array.isArray(e)?(o=r,r=0|e[1],e=0|e[0]):(e=e||0,r=r||0),o=o||0;var l=c(t)?t:t.raw;if(l){this._mipLevels.indexOf(o)<0?(s.texImage2D(s.TEXTURE_2D,0,this.format,this.format,this.type,l),this._mipLevels.push(o)):s.texSubImage2D(s.TEXTURE_2D,o,e,r,this.format,this.type,l)}else{if(!(t.shape&&t.stride&&t.data))throw new Error("gl-texture2d: Unsupported data type");if(t.shape.length<2||e+t.shape[1]>this._shape[1]>>>o||r+t.shape[0]>this._shape[0]>>>o||e<0||r<0)throw new Error("gl-texture2d: Texture dimensions are out of bounds");!function(t,e,r,o,s,l,c,f){var h=f.dtype,d=f.shape.slice();if(d.length<2||d.length>3)throw new Error("gl-texture2d: Invalid ndarray, must be 2d or 3d");var m=0,v=0,g=p(d,f.stride.slice());"float32"===h?m=t.FLOAT:"float64"===h?(m=t.FLOAT,g=!1,h="float32"):"uint8"===h?m=t.UNSIGNED_BYTE:(m=t.UNSIGNED_BYTE,g=!1,h="uint8");if(2===d.length)v=t.LUMINANCE,d=[d[0],d[1],1],f=n(f.data,d,[f.stride[0],f.stride[1],1],f.offset);else{if(3!==d.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===d[2])v=t.ALPHA;else if(2===d[2])v=t.LUMINANCE_ALPHA;else if(3===d[2])v=t.RGB;else{if(4!==d[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}d[2]}v!==t.LUMINANCE&&v!==t.ALPHA||s!==t.LUMINANCE&&s!==t.ALPHA||(v=s);if(v!==s)throw new Error("gl-texture2d: Incompatible texture format for setPixels");var y=f.size,b=c.indexOf(o)<0;b&&c.push(o);if(m===l&&g)0===f.offset&&f.data.length===y?b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data):b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data.subarray(f.offset,f.offset+y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data.subarray(f.offset,f.offset+y));else{var x;x=l===t.FLOAT?a.mallocFloat32(y):a.mallocUint8(y);var _=n(x,d,[d[2],d[2]*d[0],1]);m===t.FLOAT&&l===t.UNSIGNED_BYTE?u(_,f):i.assign(_,f),b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,x.subarray(0,y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,x.subarray(0,y)),l===t.FLOAT?a.freeFloat32(x):a.freeUint8(x)}}(s,e,r,o,this.format,this.type,this._mipLevels,t)}}},{ndarray:439,"ndarray-ops":433,"typedarray-pool":534}],234:[function(t,e,r){"use strict";e.exports=function(t,e,r){e?e.bind():t.bindBuffer(t.ELEMENT_ARRAY_BUFFER,null);var n=0|t.getParameter(t.MAX_VERTEX_ATTRIBS);if(r){if(r.length>n)throw new Error("gl-vao: Too many vertex attributes");for(var i=0;i<r.length;++i){var a=r[i];if(a.buffer){var o=a.buffer,s=a.size||4,l=a.type||t.FLOAT,c=!!a.normalized,u=a.stride||0,f=a.offset||0;o.bind(),t.enableVertexAttribArray(i),t.vertexAttribPointer(i,s,l,c,u,f)}else{if("number"==typeof a)t.vertexAttrib1f(i,a);else if(1===a.length)t.vertexAttrib1f(i,a[0]);else if(2===a.length)t.vertexAttrib2f(i,a[0],a[1]);else if(3===a.length)t.vertexAttrib3f(i,a[0],a[1],a[2]);else{if(4!==a.length)throw new Error("gl-vao: Invalid vertex attribute");t.vertexAttrib4f(i,a[0],a[1],a[2],a[3])}t.disableVertexAttribArray(i)}}for(;i<n;++i)t.disableVertexAttribArray(i)}else for(t.bindBuffer(t.ARRAY_BUFFER,null),i=0;i<n;++i)t.disableVertexAttribArray(i)}},{}],235:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t){this.gl=t,this._elements=null,this._attributes=null,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(){n(this.gl,this._elements,this._attributes)},i.prototype.update=function(t,e,r){this._elements=e,this._attributes=t,this._elementsType=r||this.gl.UNSIGNED_SHORT},i.prototype.dispose=function(){},i.prototype.unbind=function(){},i.prototype.draw=function(t,e,r){r=r||0;var n=this.gl;this._elements?n.drawElements(t,e,this._elementsType,r):n.drawArrays(t,r,e)},e.exports=function(t){return new i(t)}},{"./do-bind.js":234}],236:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t,e,r,n,i,a){this.location=t,this.dimension=e,this.a=r,this.b=n,this.c=i,this.d=a}function a(t,e,r){this.gl=t,this._ext=e,this.handle=r,this._attribs=[],this._useElements=!1,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(t){switch(this.dimension){case 1:t.vertexAttrib1f(this.location,this.a);break;case 2:t.vertexAttrib2f(this.location,this.a,this.b);break;case 3:t.vertexAttrib3f(this.location,this.a,this.b,this.c);break;case 4:t.vertexAttrib4f(this.location,this.a,this.b,this.c,this.d)}},a.prototype.bind=function(){this._ext.bindVertexArrayOES(this.handle);for(var t=0;t<this._attribs.length;++t)this._attribs[t].bind(this.gl)},a.prototype.unbind=function(){this._ext.bindVertexArrayOES(null)},a.prototype.dispose=function(){this._ext.deleteVertexArrayOES(this.handle)},a.prototype.update=function(t,e,r){if(this.bind(),n(this.gl,e,t),this.unbind(),this._attribs.length=0,t)for(var a=0;a<t.length;++a){var o=t[a];"number"==typeof 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float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\n\nvoid main() {\n    gl_FragColor = u_color;\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, step(32767.0, a_pos.x), 1);\n}\n"},fill:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_FragColor = color * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n}\n"},circle:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    float t = smoothstep(1.0 - max(blur, v_antialiasblur), 1.0, length(v_extrude));\n    gl_FragColor = color * (1.0 - t) * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform bool u_scale_with_map;\nuniform vec2 u_extrude_scale;\nuniform float u_devicepixelratio;\n\nattribute vec2 a_pos;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define mediump float radius\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main(void) {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize mediump float radius\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    // unencode the extrusion vector that we snuck into the a_pos vector\n    v_extrude = vec2(mod(a_pos, 2.0) * 2.0 - 1.0);\n\n    vec2 extrude = v_extrude * radius * u_extrude_scale;\n    // multiply a_pos by 0.5, since we had it * 2 in order to sneak\n    // in extrusion data\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5), 0, 1);\n\n    if (u_scale_with_map) {\n        gl_Position.xy += extrude;\n    } else {\n        gl_Position.xy += extrude * gl_Position.w;\n    }\n\n    // This is a minimum blur distance that serves as a faux-antialiasing for\n    // the circle. since blur is a ratio of the circle's size and the intent is\n    // to keep the blur at roughly 1px, the two are inversely related.\n    v_antialiasblur = 1.0 / u_devicepixelratio / radius;\n}\n"},line:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform float u_blur;\n\nvarying vec2 v_linewidth;\nvarying vec2 v_normal;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\nuniform mediump float u_blur;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_blur;\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_fade;\nuniform float u_opacity;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float x_a = mod(v_linesofar / u_pattern_size_a.x, 1.0);\n    float x_b = mod(v_linesofar / u_pattern_size_b.x, 1.0);\n    float y_a = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_a.y);\n    float y_b = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_b.y);\n    vec2 pos_a = mix(u_pattern_tl_a, u_pattern_br_a, vec2(x_a, y_a));\n    vec2 pos_b = mix(u_pattern_tl_b, u_pattern_br_b, vec2(x_b, y_b));\n\n    vec4 color = mix(texture2D(u_image, pos_a), texture2D(u_image, pos_b), u_fade);\n\n    alpha *= u_opacity;\n\n    gl_FragColor = color * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n    v_linesofar = a_linesofar;\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linesdfpattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\n\nuniform float u_blur;\nuniform sampler2D u_image;\nuniform float u_sdfgamma;\nuniform float u_mix;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float sdfdist_a = texture2D(u_image, v_tex_a).a;\n    float sdfdist_b = texture2D(u_image, v_tex_b).a;\n    float sdfdist = mix(sdfdist_a, sdfdist_b, u_mix);\n    alpha *= smoothstep(0.5 - u_sdfgamma, 0.5 + u_sdfgamma, sdfdist);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform vec2 u_patternscale_a;\nuniform float u_tex_y_a;\nuniform vec2 u_patternscale_b;\nuniform float u_tex_y_b;\nuniform float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    v_tex_a = vec2(a_linesofar * u_patternscale_a.x, normal.y * u_patternscale_a.y + u_tex_y_a);\n    v_tex_b = vec2(a_linesofar * u_patternscale_b.x, normal.y * u_patternscale_b.y + u_tex_y_b);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},outline:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_pos;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    gl_FragColor = outline_color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos;\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},outlinepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    // find distance to outline for alpha interpolation\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    \n\n    gl_FragColor = mix(color1, color2, u_mix) * alpha * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},pattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    gl_FragColor = mix(color1, color2, u_mix) * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n}\n"},raster:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity0;\nuniform float u_opacity1;\nuniform sampler2D u_image0;\nuniform sampler2D u_image1;\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nuniform float u_brightness_low;\nuniform float u_brightness_high;\n\nuniform float u_saturation_factor;\nuniform float u_contrast_factor;\nuniform vec3 u_spin_weights;\n\nvoid main() {\n\n    // read and cross-fade colors from the main and parent tiles\n    vec4 color0 = texture2D(u_image0, v_pos0);\n    vec4 color1 = texture2D(u_image1, v_pos1);\n    vec4 color = color0 * u_opacity0 + color1 * u_opacity1;\n    vec3 rgb = color.rgb;\n\n    // spin\n    rgb = vec3(\n        dot(rgb, u_spin_weights.xyz),\n        dot(rgb, u_spin_weights.zxy),\n        dot(rgb, u_spin_weights.yzx));\n\n    // saturation\n    float average = (color.r + color.g + color.b) / 3.0;\n    rgb += (average - rgb) * u_saturation_factor;\n\n    // contrast\n    rgb = (rgb - 0.5) * u_contrast_factor + 0.5;\n\n    // brightness\n    vec3 u_high_vec = vec3(u_brightness_low, u_brightness_low, u_brightness_low);\n    vec3 u_low_vec = vec3(u_brightness_high, u_brightness_high, u_brightness_high);\n\n    gl_FragColor = vec4(mix(u_high_vec, u_low_vec, rgb), color.a);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_tl_parent;\nuniform float u_scale_parent;\nuniform float u_buffer_scale;\n\nattribute vec2 a_pos;\nattribute vec2 a_texture_pos;\n\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos0 = (((a_texture_pos / 32767.0) - 0.5) / u_buffer_scale ) + 0.5;\n    v_pos1 = (v_pos0 * u_scale_parent) + u_tl_parent;\n}\n"},icon:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp float u_opacity;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    lowp float alpha = texture2D(u_fadetexture, v_fade_tex).a * u_opacity;\n    gl_FragColor = texture2D(u_texture, v_tex) * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n    if (u_rotate_with_map) {\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    } else {\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},sdf:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform lowp float u_buffer;\nuniform lowp float u_gamma;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    lowp float dist = texture2D(u_texture, v_tex).a;\n    lowp float fade_alpha = texture2D(u_fadetexture, v_fade_tex).a;\n    lowp float gamma = u_gamma * v_gamma_scale;\n    lowp float alpha = smoothstep(u_buffer - gamma, u_buffer + gamma, dist) * fade_alpha;\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nconst float PI = 3.141592653589793;\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform bool u_pitch_with_map;\nuniform mediump float u_pitch;\nuniform mediump float u_bearing;\nuniform mediump float u_aspect_ratio;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    // pitch-alignment: map\n    // rotation-alignment: map | viewport\n    if (u_pitch_with_map) {\n        lowp float angle = u_rotate_with_map ? (a_data[1] / 256.0 * 2.0 * PI) : u_bearing;\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, asin, -1.0 * asin, acos);\n        vec2 offset = RotationMatrix * a_offset;\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: map\n    } else if (u_rotate_with_map) {\n        // foreshortening factor to apply on pitched maps\n        // as a label goes from horizontal <=> vertical in angle\n        // it goes from 0% foreshortening to up to around 70% foreshortening\n        lowp float pitchfactor = 1.0 - cos(u_pitch * sin(u_pitch * 0.75));\n\n        lowp float lineangle = a_data[1] / 256.0 * 2.0 * PI;\n\n        // use the lineangle to position points a,b along the line\n        // project the points and calculate the label angle in projected space\n        // this calculation allows labels to be rendered unskewed on pitched maps\n        vec4 a = u_matrix * vec4(a_pos, 0, 1);\n        vec4 b = u_matrix * vec4(a_pos + vec2(cos(lineangle),sin(lineangle)), 0, 1);\n        lowp float angle = atan((b[1]/b[3] - a[1]/a[3])/u_aspect_ratio, b[0]/b[3] - a[0]/a[3]);\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, -1.0 * asin, asin, acos);\n\n        vec2 offset = RotationMatrix * (vec2((1.0-pitchfactor)+(pitchfactor*cos(angle*2.0)), 1.0) * a_offset);\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: viewport\n    } else {\n        vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_gamma_scale = (gl_Position.w - 0.5);\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},collisionbox:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_zoom;\nuniform float u_maxzoom;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n\n    float alpha = 0.5;\n\n    gl_FragColor = vec4(0.0, 1.0, 0.0, 1.0) * alpha;\n\n    if (v_placement_zoom > u_zoom) {\n        gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0) * alpha;\n    }\n\n    if (u_zoom >= v_max_zoom) {\n        gl_FragColor = vec4(0.0, 0.0, 0.0, 1.0) * alpha * 0.25;\n    }\n\n    if (v_placement_zoom >= u_maxzoom) {\n        gl_FragColor = vec4(0.0, 0.0, 1.0, 1.0) * alpha * 0.2;\n    }\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_extrude;\nattribute vec2 a_data;\n\nuniform mat4 u_matrix;\nuniform float u_scale;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos + a_extrude / u_scale, 0.0, 1.0);\n\n    v_max_zoom = a_data.x;\n    v_placement_zoom = a_data.y;\n}\n"}},e.exports.util="float evaluate_zoom_function_1(const vec4 values, const float t) {\n    if (t < 1.0) {\n        return mix(values[0], values[1], t);\n    } else if (t < 2.0) {\n        return mix(values[1], values[2], t - 1.0);\n    } else {\n        return mix(values[2], values[3], t - 2.0);\n    }\n}\nvec4 evaluate_zoom_function_4(const vec4 value0, const vec4 value1, const vec4 value2, const vec4 value3, const float t) {\n    if (t < 1.0) {\n        return mix(value0, value1, t);\n    } else if (t < 2.0) {\n        return mix(value1, value2, t - 1.0);\n    } else {\n        return mix(value2, value3, t - 2.0);\n    }\n}\n"},{path:449}],276:[function(t,e,r){"use strict";var n=t("util").format;e.exports=function(t,e){this.message=(t?t+": ":"")+n.apply(n,Array.prototype.slice.call(arguments,2)),null!==e&&void 0!==e&&e.__line__&&(this.line=e.__line__)}},{util:543}],277:[function(t,e,r){"use strict";e.exports=function(t){for(var e=1;e<arguments.length;e++){var r=arguments[e];for(var n in r)t[n]=r[n]}return t}},{}],278:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number?"number":t instanceof String?"string":t instanceof Boolean?"boolean":Array.isArray(t)?"array":null===t?"null":typeof t}},{}],279:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number||t instanceof String||t instanceof Boolean?t.valueOf():t}},{}],280:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("../util/extend");e.exports=function(e){var 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n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate"),o=t("./validate_object"),s=t("./validate_array"),l=t("./validate_number");e.exports=function(t){var e,r=t.valueSpec,c=void 0!==t.value.property||"object"===e,u=void 0===t.value.property||"object"===e,f=o({key:t.key,value:t.value,valueSpec:t.styleSpec.function,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{stops:function(t){var e=[],r=t.value;e=e.concat(s({key:t.key,value:r,valueSpec:t.valueSpec,style:t.style,styleSpec:t.styleSpec,arrayElementValidator:h})),"array"===i(r)&&0===r.length&&e.push(new n(t.key,r,"array must have at least one stop"));return e}}});return t.styleSpec.$version>=8&&(c&&!t.valueSpec["property-function"]?f.push(new n(t.key,t.value,"property functions not supported")):u&&!t.valueSpec["zoom-function"]&&f.push(new n(t.key,t.value,"zoom functions not supported"))),f;function h(t){var s=[],c=t.value,f=t.key;if("array"!==i(c))return[new n(f,c,"array expected, %s 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order"))),s}function d(t){var e=[],r=i(t.value);return"number"!==r&&"string"!==r&&"array"!==r&&e.push(new n(t.key,t.value,"property value must be a number, string or array")),e}}},{"../error/validation_error":276,"../util/get_type":278,"./validate":280,"./validate_array":281,"./validate_number":291,"./validate_object":292}],288:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("./validate_string");e.exports=function(t){var e=t.value,r=t.key,a=i(t);return a.length?a:(-1===e.indexOf("{fontstack}")&&a.push(new n(r,e,'"glyphs" url must include a "{fontstack}" token')),-1===e.indexOf("{range}")&&a.push(new n(r,e,'"glyphs" url must include a "{range}" token')),a)}},{"../error/validation_error":276,"./validate_string":295}],289:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/unbundle_jsonlint"),a=t("./validate_object"),o=t("./validate_filter"),s=t("./validate_paint_property"),l=t("./validate_layout_property"),c=t("../util/extend");e.exports=function(t){var e=[],r=t.value,u=t.key,f=t.style,h=t.styleSpec;r.type||r.ref||e.push(new n(u,r,'either "type" or "ref" is required'));var d,p=i(r.type),m=i(r.ref);if(r.id)for(var v=0;v<t.arrayIndex;v++){var g=f.layers[v];i(g.id)===i(r.id)&&e.push(new n(u,r.id,'duplicate layer id "%s", previously used at line %d',r.id,g.id.__line__))}if("ref"in r)["type","source","source-layer","filter","layout"].forEach(function(t){t in r&&e.push(new n(u,r[t],'"%s" is prohibited for ref layers',t))}),f.layers.forEach(function(t){t.id==m&&(d=t)}),d?d.ref?e.push(new n(u,r.ref,"ref cannot reference another ref layer")):p=i(d.type):e.push(new n(u,r.ref,'ref layer "%s" not found',m));else if("background"!==p)if(r.source){var y=f.sources&&f.sources[r.source];y?"vector"==y.type&&"raster"==p?e.push(new n(u,r.source,'layer "%s" requires a raster source',r.id)):"raster"==y.type&&"raster"!=p?e.push(new n(u,r.source,'layer "%s" requires a vector source',r.id)):"vector"!=y.type||r["source-layer"]||e.push(new n(u,r,'layer "%s" must specify a "source-layer"',r.id)):e.push(new n(u,r.source,'source "%s" not found',r.source))}else e.push(new n(u,r,'missing required property "source"'));return e=e.concat(a({key:u,value:r,valueSpec:h.layer,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{filter:o,layout:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return l(c({layerType:p},t))}}})},paint:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return s(c({layerType:p},t))}}})}}}))}},{"../error/validation_error":276,"../util/extend":277,"../util/unbundle_jsonlint":279,"./validate_filter":286,"./validate_layout_property":290,"./validate_object":292,"./validate_paint_property":293}],290:[function(t,e,r){"use strict";var n=t("./validate"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.style,a=t.styleSpec,o=t.value,s=t.objectKey,l=a["layout_"+t.layerType];if(t.valueSpec||l[s]){var c=[];return"symbol"===t.layerType&&("icon-image"===s&&r&&!r.sprite?c.push(new i(e,o,'use of "icon-image" requires a style "sprite" property')):"text-field"===s&&r&&!r.glyphs&&c.push(new i(e,o,'use of "text-field" requires a style "glyphs" property'))),c.concat(n({key:t.key,value:o,valueSpec:t.valueSpec||l[s],style:r,styleSpec:a}))}return[new i(e,o,'unknown property "%s"',s)]}},{"../error/validation_error":276,"./validate":280}],291:[function(t,e,r){"use strict";var n=t("../util/get_type"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.value,a=t.valueSpec,o=n(r);return"number"!==o?[new i(e,r,"number expected, %s found",o)]:"minimum"in a&&r<a.minimum?[new i(e,r,"%s is less than the minimum value %s",r,a.minimum)]:"maximum"in a&&r>a.maximum?[new i(e,r,"%s is greater than the maximum value %s",r,a.maximum)]:[]}},{"../error/validation_error":276,"../util/get_type":278}],292:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate");e.exports=function(t){var e=t.key,r=t.value,o=t.valueSpec,s=t.objectElementValidators||{},l=t.style,c=t.styleSpec,u=[],f=i(r);if("object"!==f)return[new n(e,r,"object expected, %s found",f)];for(var h in r){var d=h.split(".")[0],p=o&&(o[d]||o["*"]),m=s[d]||s["*"];p||m?u=u.concat((m||a)({key:(e?e+".":e)+h,value:r[h],valueSpec:p,style:l,styleSpec:c,object:r,objectKey:h})):""!==e&&1!==e.split(".").length&&u.push(new n(e,r[h],'unknown property 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v=t.childLayers[m],g=n[v.id],y=p.name;l("a_"===p.name.slice(0,2));var b,x=p.name.slice(2);if(g.fragmentPragmas.initialize[x]="",v.isPaintValueFeatureConstant(p.paintProperty))g.uniforms.push(p),g.fragmentPragmas.define[x]=g.vertexPragmas.define[x]=["uniform",c,u,y].join(" ")+";",g.fragmentPragmas.initialize[x]=g.vertexPragmas.initialize[x]=[c,u,x,"=",y].join(" ")+";\n";else if(v.isPaintValueZoomConstant(p.paintProperty)){g.attributes.push(o.extend({},p,{name:y})),b=["varying",c,u,x].join(" ")+";\n";var _=[g.fragmentPragmas.define[x],"attribute",c,u,y].join(" ")+";\n";g.fragmentPragmas.define[x]=b,g.vertexPragmas.define[x]=b+_,g.vertexPragmas.initialize[x]=[x,"=",y,"/",p.multiplier.toFixed(1)].join(" ")+";\n"}else{for(var w="u_"+y.slice(2)+"_t",M=v.getPaintValueStopZoomLevels(p.paintProperty),k=0;k<M.length&&M[k]<t.zoom;)k++;for(var A=Math.max(0,Math.min(M.length-4,k-2)),T=[],E=0;E<4;E++)T.push(M[Math.min(A+E,M.length-1)]);b=["varying",c,u,x].join(" 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a(t,{layoutVertexArrayType:i.layoutVertexArrayType.serialize(),elementArrayType:i.elementArrayType&&i.elementArrayType.serialize(),elementArrayType2:i.elementArrayType2&&i.elementArrayType2.serialize(),paintVertexArrayTypes:o})})})}}e.exports=c,c.create=function(e){return new({fill:t("./bucket/fill_bucket"),line:t("./bucket/line_bucket"),circle:t("./bucket/circle_bucket"),symbol:t("./bucket/symbol_bucket")}[e.layer.type])(e)},c.EXTENT=8192,c.prototype.populateArrays=function(){this.createArrays(),this.recalculateStyleLayers();for(var t=0;t<this.features.length;t++)this.addFeature(this.features[t]);this.trimArrays()},c.prototype.prepareArrayGroup=function(t,e){var r=this.arrayGroups[t],n=r.length&&r[r.length-1];return n&&n.hasCapacityFor(e)||((n=new i({layoutVertexArrayType:this.programInterfaces[t].layoutVertexArrayType,elementArrayType:this.programInterfaces[t].elementArrayType,elementArrayType2:this.programInterfaces[t].elementArrayType2,paintVertexArrayTypes:this.paintVertexArrayTypes[t]})).index=r.length,r.push(n)),n},c.prototype.createArrays=function(){for(var t in this.arrayGroups={},this.paintVertexArrayTypes={},this.programInterfaces){this.arrayGroups[t]=[];var e=this.paintVertexArrayTypes[t]={},r=this.paintAttributes[t];for(var n in r)e[n]=new c.VertexArrayType(r[n].attributes)}},c.prototype.destroy=function(t){for(var e in this.bufferGroups)for(var r=this.bufferGroups[e],n=0;n<r.length;n++)r[n].destroy(t)},c.prototype.trimArrays=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)e[r].trim()},c.prototype.isEmpty=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)if(!e[r].isEmpty())return!1;return!0},c.prototype.getTransferables=function(t){for(var e in this.arrayGroups)for(var r=this.arrayGroups[e],n=0;n<r.length;n++)r[n].getTransferables(t)},c.prototype.setUniforms=function(t,e,r,n,i){for(var a=this.paintAttributes[e][n.id].uniforms,o=0;o<a.length;o++){var s=a[o],l=r[s.name];t["uniform"+s.components+"fv"](l,s.getValue(n,i))}},c.prototype.serialize=function(){return{layerId:this.layer.id,zoom:this.zoom,arrays:o.mapObject(this.arrayGroups,function(t){return t.map(function(t){return t.serialize()})}),paintVertexArrayTypes:o.mapObject(this.paintVertexArrayTypes,function(t){return o.mapObject(t,function(t){return t.serialize()})}),childLayerIds:this.childLayers.map(function(t){return t.id})}},c.prototype.createFilter=function(){this.filter||(this.filter=n(this.layer.filter))};var u={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};function f(t,e){return function(r,n,i){if(1===e.length)return t.getValue(r,o.extend({},n,{zoom:e[0]}),i);for(var a=[],s=0;s<e.length;s++){var l=e[s];a.push(t.getValue(r,o.extend({},n,{zoom:l}),i)[0])}return a}}function h(t,e){return function(r,n){var i=r.getPaintInterpolationT(t.paintProperty,n.zoom);return[Math.max(0,Math.min(4,i-e))]}}c.prototype.recalculateStyleLayers=function(){for(var t=0;t<this.childLayers.length;t++)this.childLayers[t].recalculate(this.zoom,u)},c.prototype.populatePaintArrays=function(t,e,r,n,i){for(var a=0;a<this.childLayers.length;a++)for(var o=this.childLayers[a],s=this.arrayGroups[t],l=n.index;l<s.length;l++){var c=s[l],u=c.layoutVertexArray.length,f=c.paintVertexArrays[o.id];f.resize(u);for(var h=this.paintAttributes[t][o.id].attributes,d=0;d<h.length;d++)for(var p=h[d],m=p.getValue(o,e,r),v=p.multiplier||1,g=p.components||1,y=l===n.index?i:0;y<u;y++)for(var b=f.get(y),x=0;x<g;x++){b[g>1?p.name+x:p.name]=m[x]*v}}},c.VertexArrayType=function(t){return new s({members:t,alignment:4})},c.ElementArrayType=function(t){return new s({members:[{type:"Uint16",name:"vertices",components:t||3}]})}},{"../util/struct_array":412,"../util/util":414,"./array_group":300,"./bucket/circle_bucket":302,"./bucket/fill_bucket":303,"./bucket/line_bucket":304,"./bucket/symbol_bucket":305,"./buffer_group":307,assert:51,"feature-filter":141}],302:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT;function s(){n.apply(this,arguments)}e.exports=s,s.prototype=i.inherit(n,{}),s.prototype.addCircleVertex=function(t,e,r,n,i){return t.emplaceBack(2*e+(n+1)/2,2*r+(i+1)/2)},s.prototype.programInterfaces={circle:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType,paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("circle-color",e,r)},multiplier:255,paintProperty:"circle-color"},{name:"a_radius",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-radius",e,r)]},multiplier:10,paintProperty:"circle-radius"},{name:"a_blur",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-blur",e,r)]},multiplier:10,paintProperty:"circle-blur"},{name:"a_opacity",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-opacity",e,r)]},multiplier:255,paintProperty:"circle-opacity"}]}},s.prototype.addFeature=function(t){for(var e={zoom:this.zoom},r=a(t),n=this.prepareArrayGroup("circle",0),i=n.layoutVertexArray.length,s=0;s<r.length;s++)for(var l=0;l<r[s].length;l++){var c=r[s][l].x,u=r[s][l].y;if(!(c<0||c>=o||u<0||u>=o)){var f=this.prepareArrayGroup("circle",4),h=f.layoutVertexArray,d=this.addCircleVertex(h,c,u,-1,-1);this.addCircleVertex(h,c,u,1,-1),this.addCircleVertex(h,c,u,1,1),this.addCircleVertex(h,c,u,-1,1),f.elementArray.emplaceBack(d,d+1,d+2),f.elementArray.emplaceBack(d,d+3,d+2)}}this.populatePaintArrays("circle",e,t.properties,n,i)}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],303:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=t("earcut"),s=t("../../util/classify_rings");function l(){n.apply(this,arguments)}e.exports=l,l.prototype=i.inherit(n,{}),l.prototype.programInterfaces={fill:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType(1),elementArrayType2:new n.ElementArrayType(2),paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-color",e,r)},multiplier:255,paintProperty:"fill-color"},{name:"a_outline_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-outline-color",e,r)},multiplier:255,paintProperty:"fill-outline-color"},{name:"a_opacity",components:1,type:"Uint8",getValue:function(t,e,r){return[t.getPaintValue("fill-opacity",e,r)]},multiplier:255,paintProperty:"fill-opacity"}]}},l.prototype.addFeature=function(t){for(var e=a(t),r=s(e,500),n=this.prepareArrayGroup("fill",0),i=n.layoutVertexArray.length,o=0;o<r.length;o++)this.addPolygon(r[o]);this.populatePaintArrays("fill",{zoom:this.zoom},t.properties,n,i)},l.prototype.addPolygon=function(t){for(var e=0,r=0;r<t.length;r++)e+=t[r].length;for(var n=this.prepareArrayGroup("fill",e),i=[],a=[],s=n.layoutVertexArray.length,l=0;l<t.length;l++){var c=t[l];l>0&&a.push(i.length/2);for(var u=0;u<c.length;u++){var f=c[u],h=n.layoutVertexArray.emplaceBack(f.x,f.y);u>=1&&n.elementArray2.emplaceBack(h-1,h),i.push(f.x),i.push(f.y)}}for(var d=o(i,a),p=0;p<d.length;p++)n.elementArray.emplaceBack(d[p]+s)}},{"../../util/classify_rings":402,"../../util/util":414,"../bucket":301,"../load_geometry":309,earcut:135}],304:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT,s=Math.cos(Math.PI/180*37.5),l=Math.pow(2,14)/.5;function c(){n.apply(this,arguments)}e.exports=c,c.prototype=i.inherit(n,{}),c.prototype.addLineVertex=function(t,e,r,n,i,a,o){return t.emplaceBack(e.x<<1|n,e.y<<1|i,Math.round(63*r.x)+128,Math.round(63*r.y)+128,1+(0===a?0:a<0?-1:1)|(.5*o&63)<<2,.5*o>>6)},c.prototype.programInterfaces={line:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_data",components:4,type:"Uint8"}]),elementArrayType:new n.ElementArrayType}},c.prototype.addFeature=function(t){for(var e=a(t,15),r=0;r<e.length;r++)this.addLine(e[r],this.layer.layout["line-join"],this.layer.layout["line-cap"],this.layer.layout["line-miter-limit"],this.layer.layout["line-round-limit"])},c.prototype.addLine=function(t,e,r,n,i){for(var a=t.length;a>2&&t[a-1].equals(t[a-2]);)a--;if(!(t.length<2)){"bevel"===e&&(n=1.05);var l=o/(512*this.overscaling)*15,c=t[0],u=t[a-1],f=c.equals(u);if(this.prepareArrayGroup("line",10*a),2!==a||!f){this.distance=0;var h,d,p,m,v,g,y,b=r,x=f?"butt":r,_=!0;this.e1=this.e2=this.e3=-1,f&&(h=t[a-2],v=c.sub(h)._unit()._perp());for(var w=0;w<a;w++)if(!(p=f&&w===a-1?t[1]:t[w+1])||!t[w].equals(p)){v&&(m=v),h&&(d=h),h=t[w],v=p?p.sub(h)._unit()._perp():m;var M=(m=m||v).add(v)._unit(),k=M.x*v.x+M.y*v.y,A=1/k,T=k<s&&d&&p;if(T&&w>0){var E=h.dist(d);if(E>2*l){var S=h.sub(h.sub(d)._mult(l/E)._round());this.distance+=S.dist(d),this.addCurrentVertex(S,this.distance,m.mult(1),0,0,!1),d=S}}var L=d&&p,C=L?e:p?b:x;if(L&&"round"===C&&(A<i?C="miter":A<=2&&(C="fakeround")),"miter"===C&&A>n&&(C="bevel"),"bevel"===C&&(A>2&&(C="flipbevel"),A<n&&(C="miter")),d&&(this.distance+=h.dist(d)),"miter"===C)M._mult(A),this.addCurrentVertex(h,this.distance,M,0,0,!1);else if("flipbevel"===C){if(A>100)M=v.clone();else{var P=m.x*v.y-m.y*v.x>0?-1:1,z=A*m.add(v).mag()/m.sub(v).mag();M._perp()._mult(z*P)}this.addCurrentVertex(h,this.distance,M,0,0,!1),this.addCurrentVertex(h,this.distance,M.mult(-1),0,0,!1)}else if("bevel"===C||"fakeround"===C){var O=m.x*v.y-m.y*v.x>0,D=-Math.sqrt(A*A-1);if(O?(y=0,g=D):(g=0,y=D),_||this.addCurrentVertex(h,this.distance,m,g,y,!1),"fakeround"===C){for(var I,R=Math.floor(8*(.5-(k-.5))),N=0;N<R;N++)I=v.mult((N+1)/(R+1))._add(m)._unit(),this.addPieSliceVertex(h,this.distance,I,O);this.addPieSliceVertex(h,this.distance,M,O);for(var F=R-1;F>=0;F--)I=m.mult((F+1)/(R+1))._add(v)._unit(),this.addPieSliceVertex(h,this.distance,I,O)}p&&this.addCurrentVertex(h,this.distance,v,-g,-y,!1)}else"butt"===C?(_||this.addCurrentVertex(h,this.distance,m,0,0,!1),p&&this.addCurrentVertex(h,this.distance,v,0,0,!1)):"square"===C?(_||(this.addCurrentVertex(h,this.distance,m,1,1,!1),this.e1=this.e2=-1),p&&this.addCurrentVertex(h,this.distance,v,-1,-1,!1)):"round"===C&&(_||(this.addCurrentVertex(h,this.distance,m,0,0,!1),this.addCurrentVertex(h,this.distance,m,1,1,!0),this.e1=this.e2=-1),p&&(this.addCurrentVertex(h,this.distance,v,-1,-1,!0),this.addCurrentVertex(h,this.distance,v,0,0,!1)));if(T&&w<a-1){var j=h.dist(p);if(j>2*l){var B=h.add(p.sub(h)._mult(l/j)._round());this.distance+=B.dist(h),this.addCurrentVertex(B,this.distance,v.mult(1),0,0,!1),h=B}}_=!1}}}},c.prototype.addCurrentVertex=function(t,e,r,n,i,a){var o,s=a?1:0,c=this.arrayGroups.line[this.arrayGroups.line.length-1],u=c.layoutVertexArray,f=c.elementArray;o=r.clone(),n&&o._sub(r.perp()._mult(n)),this.e3=this.addLineVertex(u,t,o,s,0,n,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,o=r.mult(-1),i&&o._sub(r.perp()._mult(i)),this.e3=this.addLineVertex(u,t,o,s,1,-i,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,e>l/2&&(this.distance=0,this.addCurrentVertex(t,this.distance,r,n,i,a))},c.prototype.addPieSliceVertex=function(t,e,r,n){var i=n?1:0;r=r.mult(n?-1:1);var a=this.arrayGroups.line[this.arrayGroups.line.length-1],o=a.layoutVertexArray,s=a.elementArray;this.e3=this.addLineVertex(o,t,r,0,i,0,e),this.e1>=0&&this.e2>=0&&s.emplaceBack(this.e1,this.e2,this.e3),n?this.e2=this.e3:this.e1=this.e3}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],305:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../bucket"),a=t("../../symbol/anchor"),o=t("../../symbol/get_anchors"),s=t("../../util/token"),l=t("../../symbol/quads"),c=t("../../symbol/shaping"),u=t("../../symbol/resolve_text"),f=t("../../symbol/mergelines"),h=t("../../symbol/clip_line"),d=t("../../util/util"),p=t("../load_geometry"),m=t("../../symbol/collision_feature"),v=c.shapeText,g=c.shapeIcon,y=l.getGlyphQuads,b=l.getIconQuads,x=i.EXTENT;function _(t){i.apply(this,arguments),this.showCollisionBoxes=t.showCollisionBoxes,this.overscaling=t.overscaling,this.collisionBoxArray=t.collisionBoxArray,this.symbolQuadsArray=t.symbolQuadsArray,this.symbolInstancesArray=t.symbolInstancesArray,this.sdfIcons=t.sdfIcons,this.iconsNeedLinear=t.iconsNeedLinear,this.adjustedTextSize=t.adjustedTextSize,this.adjustedIconSize=t.adjustedIconSize,this.fontstack=t.fontstack}e.exports=_,_.MAX_QUADS=65535,_.prototype=d.inherit(i,{}),_.prototype.serialize=function(){var t=i.prototype.serialize.apply(this);return t.sdfIcons=this.sdfIcons,t.iconsNeedLinear=this.iconsNeedLinear,t.adjustedTextSize=this.adjustedTextSize,t.adjustedIconSize=this.adjustedIconSize,t.fontstack=this.fontstack,t};var w=new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_offset",components:2,type:"Int16"},{name:"a_texture_pos",components:2,type:"Uint16"},{name:"a_data",components:4,type:"Uint8"}]),M=new i.ElementArrayType;function k(t,e,r,n,i,a,o,s,l,c,u){return t.emplaceBack(e,r,Math.round(64*n),Math.round(64*i),a/4,o/4,10*(c||0),u,10*(s||0),10*Math.min(l||25,25))}_.prototype.addCollisionBoxVertex=function(t,e,r,n,i){return t.emplaceBack(e.x,e.y,Math.round(r.x),Math.round(r.y),10*n,10*i)},_.prototype.programInterfaces={glyph:{layoutVertexArrayType:w,elementArrayType:M},icon:{layoutVertexArrayType:w,elementArrayType:M},collisionBox:{layoutVertexArrayType:new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_extrude",components:2,type:"Int16"},{name:"a_data",components:2,type:"Uint8"}])}},_.prototype.populateArrays=function(t,e,r){var n={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};this.adjustedTextMaxSize=this.layer.getLayoutValue("text-size",{zoom:18,zoomHistory:n}),this.adjustedTextSize=this.layer.getLayoutValue("text-size",{zoom:this.zoom+1,zoomHistory:n}),this.adjustedIconMaxSize=this.layer.getLayoutValue("icon-size",{zoom:18,zoomHistory:n}),this.adjustedIconSize=this.layer.getLayoutValue("icon-size",{zoom:this.zoom+1,zoomHistory:n});var i=512*this.overscaling;this.tilePixelRatio=x/i,this.compareText={},this.iconsNeedLinear=!1,this.symbolInstancesStartIndex=this.symbolInstancesArray.length;var a=this.layer.layout,o=this.features,l=this.textFeatures,c=.5,u=.5;switch(a["text-anchor"]){case"right":case"top-right":case"bottom-right":c=1;break;case"left":case"top-left":case"bottom-left":c=0}switch(a["text-anchor"]){case"bottom":case"bottom-right":case"bottom-left":u=1;break;case"top":case"top-right":case"top-left":u=0}for(var h,m,y="right"===a["text-justify"]?1:"left"===a["text-justify"]?0:.5,b=24*a["text-line-height"],_="line"!==a["symbol-placement"]?24*a["text-max-width"]:0,w=24*a["text-letter-spacing"],M=[24*a["text-offset"][0],24*a["text-offset"][1]],k=this.fontstack=a["text-font"].join(","),A=[],T=0;T<o.length;T++)A.push(p(o[T]));if("line"===a["symbol-placement"]){var E=f(o,l,A);A=E.geometries,o=E.features,l=E.textFeatures}for(var S=0;S<o.length;S++)if(A[S]){if(h=l[S]?v(l[S],e[k],_,b,c,u,y,w,M):null,a["icon-image"]){var L=r[s(o[S].properties,a["icon-image"])];m=g(L,a),L&&(void 0===this.sdfIcons?this.sdfIcons=L.sdf:this.sdfIcons!==L.sdf&&d.warnOnce("Style sheet warning: Cannot mix SDF and non-SDF icons in one buffer"),1!==L.pixelRatio?this.iconsNeedLinear=!0:0===a["icon-rotate"]&&this.layer.isLayoutValueFeatureConstant("icon-rotate")||(this.iconsNeedLinear=!0))}else m=null;(h||m)&&this.addFeature(A[S],h,m,o[S])}this.symbolInstancesEndIndex=this.symbolInstancesArray.length,this.placeFeatures(t,this.showCollisionBoxes),this.trimArrays()},_.prototype.addFeature=function(t,e,r,n){var i=this.layer.layout,s=this.adjustedTextSize/24,l=void 0!==this.adjustedTextMaxSize?this.adjustedTextMaxSize:this.adjustedTextSize,c=this.tilePixelRatio*s,u=this.tilePixelRatio*l/24,f=this.tilePixelRatio*this.adjustedIconSize,d=this.tilePixelRatio*i["symbol-spacing"],p=i["symbol-avoid-edges"],m=i["text-padding"]*this.tilePixelRatio,v=i["icon-padding"]*this.tilePixelRatio,g=i["text-max-angle"]/180*Math.PI,y="map"===i["text-rotation-alignment"]&&"line"===i["symbol-placement"],b="map"===i["icon-rotation-alignment"]&&"line"===i["symbol-placement"],_=i["text-allow-overlap"]||i["icon-allow-overlap"]||i["text-ignore-placement"]||i["icon-ignore-placement"],w="line"===i["symbol-placement"],M=d/2;w&&(t=h(t,0,0,x,x));for(var k=0;k<t.length;k++)for(var A,T=t[k],E=0,S=(A=w?o(T,d,g,e,r,24,u,this.overscaling,x):[new a(T[0].x,T[0].y,0)]).length;E<S;E++){var L=A[E];if(!(e&&w&&this.anchorIsTooClose(e.text,M,L))){var C=!(L.x<0||L.x>x||L.y<0||L.y>x);if(!p||C){var P=C||_;this.addSymbolInstance(L,T,e,r,this.layer,P,this.symbolInstancesArray.length,this.collisionBoxArray,n.index,this.sourceLayerIndex,this.index,c,m,y,f,v,b,{zoom:this.zoom},n.properties)}}}},_.prototype.anchorIsTooClose=function(t,e,r){var n=this.compareText;if(t in n){for(var i=n[t],a=i.length-1;a>=0;a--)if(r.dist(i[a])<e)return!0}else n[t]=[];return n[t].push(r),!1},_.prototype.placeFeatures=function(t,e){this.recalculateStyleLayers(),this.createArrays();var r=this.layer.layout,n=t.maxScale,i="map"===r["text-rotation-alignment"]&&"line"===r["symbol-placement"],a="map"===r["icon-rotation-alignment"]&&"line"===r["symbol-placement"];if(r["text-allow-overlap"]||r["icon-allow-overlap"]||r["text-ignore-placement"]||r["icon-ignore-placement"]){var o=this.symbolInstancesArray.toArray(this.symbolInstancesStartIndex,this.symbolInstancesEndIndex),s=t.angle,l=Math.sin(s),c=Math.cos(s);this.sortedSymbolInstances=o.sort(function(t,e){return(l*t.anchorPointX+c*t.anchorPointY|0)-(l*e.anchorPointX+c*e.anchorPointY|0)||e.index-t.index})}for(var u=this.symbolInstancesStartIndex;u<this.symbolInstancesEndIndex;u++){var f=this.sortedSymbolInstances?this.sortedSymbolInstances[u-this.symbolInstancesStartIndex]:this.symbolInstancesArray.get(u),h={boxStartIndex:f.textBoxStartIndex,boxEndIndex:f.textBoxEndIndex},d={boxStartIndex:f.iconBoxStartIndex,boxEndIndex:f.iconBoxEndIndex},p=!(f.textBoxStartIndex===f.textBoxEndIndex),m=!(f.iconBoxStartIndex===f.iconBoxEndIndex),v=r["text-optional"]||!p,g=r["icon-optional"]||!m,y=p?t.placeCollisionFeature(h,r["text-allow-overlap"],r["symbol-avoid-edges"]):t.minScale,b=m?t.placeCollisionFeature(d,r["icon-allow-overlap"],r["symbol-avoid-edges"]):t.minScale;v||g?!g&&y?y=Math.max(b,y):!v&&b&&(b=Math.max(b,y)):b=y=Math.max(b,y),p&&(t.insertCollisionFeature(h,y,r["text-ignore-placement"]),y<=n&&this.addSymbols("glyph",f.glyphQuadStartIndex,f.glyphQuadEndIndex,y,r["text-keep-upright"],i,t.angle)),m&&(t.insertCollisionFeature(d,b,r["icon-ignore-placement"]),b<=n&&this.addSymbols("icon",f.iconQuadStartIndex,f.iconQuadEndIndex,b,r["icon-keep-upright"],a,t.angle))}e&&this.addToDebugBuffers(t)},_.prototype.addSymbols=function(t,e,r,n,i,a,o){for(var s=this.prepareArrayGroup(t,4*(r-e)),l=s.elementArray,c=s.layoutVertexArray,u=this.zoom,f=Math.max(Math.log(n)/Math.LN2+u,0),h=e;h<r;h++){var d=this.symbolQuadsArray.get(h).SymbolQuad,p=(d.anchorAngle+o+Math.PI)%(2*Math.PI);if(!(i&&a&&(p<=Math.PI/2||p>3*Math.PI/2))){var m=d.tl,v=d.tr,g=d.bl,y=d.br,b=d.tex,x=d.anchorPoint,_=Math.max(u+Math.log(d.minScale)/Math.LN2,f),w=Math.min(u+Math.log(d.maxScale)/Math.LN2,25);if(!(w<=_)){_===f&&(_=0);var M=Math.round(d.glyphAngle/(2*Math.PI)*256),A=k(c,x.x,x.y,m.x,m.y,b.x,b.y,_,w,f,M);k(c,x.x,x.y,v.x,v.y,b.x+b.w,b.y,_,w,f,M),k(c,x.x,x.y,g.x,g.y,b.x,b.y+b.h,_,w,f,M),k(c,x.x,x.y,y.x,y.y,b.x+b.w,b.y+b.h,_,w,f,M),l.emplaceBack(A,A+1,A+2),l.emplaceBack(A+1,A+2,A+3)}}}},_.prototype.updateIcons=function(t){this.recalculateStyleLayers();var e=this.layer.layout["icon-image"];if(e)for(var r=0;r<this.features.length;r++){var n=s(this.features[r].properties,e);n&&(t[n]=!0)}},_.prototype.updateFont=function(t){this.recalculateStyleLayers();var e=this.layer.layout["text-font"],r=t[e]=t[e]||{};this.textFeatures=u(this.features,this.layer.layout,r)},_.prototype.addToDebugBuffers=function(t){for(var e=this.prepareArrayGroup("collisionBox",0).layoutVertexArray,r=-t.angle,i=t.yStretch,a=this.symbolInstancesStartIndex;a<this.symbolInstancesEndIndex;a++){var o=this.symbolInstancesArray.get(a);o.textCollisionFeature={boxStartIndex:o.textBoxStartIndex,boxEndIndex:o.textBoxEndIndex},o.iconCollisionFeature={boxStartIndex:o.iconBoxStartIndex,boxEndIndex:o.iconBoxEndIndex};for(var s=0;s<2;s++){var l=o[0===s?"textCollisionFeature":"iconCollisionFeature"];if(l)for(var c=l.boxStartIndex;c<l.boxEndIndex;c++){var u=this.collisionBoxArray.get(c),f=u.anchorPoint,h=new n(u.x1,u.y1*i)._rotate(r),d=new n(u.x2,u.y1*i)._rotate(r),p=new n(u.x1,u.y2*i)._rotate(r),m=new n(u.x2,u.y2*i)._rotate(r),v=Math.max(0,Math.min(25,this.zoom+Math.log(u.maxScale)/Math.LN2)),g=Math.max(0,Math.min(25,this.zoom+Math.log(u.placementScale)/Math.LN2));this.addCollisionBoxVertex(e,f,h,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,h,v,g)}}}},_.prototype.addSymbolInstance=function(t,e,r,n,i,a,o,s,l,c,u,f,h,p,v,g,x,w,M){var k,A,T,E,S,L,C,P;if(r&&(C=a?y(t,r,f,e,i,p):[],S=new m(s,e,t,l,c,u,r,f,h,p,!1)),k=this.symbolQuadsArray.length,C&&C.length)for(var z=0;z<C.length;z++)this.addSymbolQuad(C[z]);A=this.symbolQuadsArray.length;var O=S?S.boxStartIndex:this.collisionBoxArray.length,D=S?S.boxEndIndex:this.collisionBoxArray.length;n&&(P=a?b(t,n,v,e,i,x,r,w,M):[],L=new m(s,e,t,l,c,u,n,v,g,x,!0)),T=this.symbolQuadsArray.length,P&&1===P.length&&this.addSymbolQuad(P[0]),E=this.symbolQuadsArray.length;var I=L?L.boxStartIndex:this.collisionBoxArray.length,R=L?L.boxEndIndex:this.collisionBoxArray.length;return E>_.MAX_QUADS&&d.warnOnce("Too many symbols being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),A>_.MAX_QUADS&&d.warnOnce("Too many glyphs being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),this.symbolInstancesArray.emplaceBack(O,D,I,R,k,A,T,E,t.x,t.y,o)},_.prototype.addSymbolQuad=function(t){return this.symbolQuadsArray.emplaceBack(t.anchorPoint.x,t.anchorPoint.y,t.tl.x,t.tl.y,t.tr.x,t.tr.y,t.bl.x,t.bl.y,t.br.x,t.br.y,t.tex.h,t.tex.w,t.tex.x,t.tex.y,t.anchorAngle,t.glyphAngle,t.maxScale,t.minScale)}},{"../../symbol/anchor":363,"../../symbol/clip_line":365,"../../symbol/collision_feature":367,"../../symbol/get_anchors":369,"../../symbol/mergelines":372,"../../symbol/quads":373,"../../symbol/resolve_text":374,"../../symbol/shaping":375,"../../util/token":413,"../../util/util":414,"../bucket":301,"../load_geometry":309,"point-geometry":458}],306:[function(t,e,r){"use strict";function n(t,e,r){this.arrayBuffer=t.arrayBuffer,this.length=t.length,this.attributes=e.members,this.itemSize=e.bytesPerElement,this.type=r,this.arrayType=e}e.exports=n,n.prototype.bind=function(t){var e=t[this.type];this.buffer?t.bindBuffer(e,this.buffer):(this.buffer=t.createBuffer(),t.bindBuffer(e,this.buffer),t.bufferData(e,this.arrayBuffer,t.STATIC_DRAW),this.arrayBuffer=null)};var i={Int8:"BYTE",Uint8:"UNSIGNED_BYTE",Int16:"SHORT",Uint16:"UNSIGNED_SHORT"};n.prototype.setVertexAttribPointers=function(t,e){for(var r=0;r<this.attributes.length;r++){var n=this.attributes[r],a=e[n.name];void 0!==a&&t.vertexAttribPointer(a,n.components,t[i[n.type]],!1,this.arrayType.bytesPerElement,n.offset)}},n.prototype.destroy=function(t){this.buffer&&t.deleteBuffer(this.buffer)},n.BufferType={VERTEX:"ARRAY_BUFFER",ELEMENT:"ELEMENT_ARRAY_BUFFER"}},{}],307:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./buffer"),a=t("../render/vertex_array_object");function o(t,e){this.layoutVertexBuffer=new i(t.layoutVertexArray,e.layoutVertexArrayType,i.BufferType.VERTEX),t.elementArray&&(this.elementBuffer=new i(t.elementArray,e.elementArrayType,i.BufferType.ELEMENT));var r,o=this.vaos={};t.elementArray2&&(this.elementBuffer2=new i(t.elementArray2,e.elementArrayType2,i.BufferType.ELEMENT),r=this.secondVaos={}),this.paintVertexBuffers=n.mapObject(t.paintVertexArrays,function(n,s){return o[s]=new a,t.elementArray2&&(r[s]=new a),new i(n,e.paintVertexArrayTypes[s],i.BufferType.VERTEX)})}e.exports=o,o.prototype.destroy=function(t){for(var e in this.layoutVertexBuffer.destroy(t),this.elementBuffer&&this.elementBuffer.destroy(t),this.elementBuffer2&&this.elementBuffer2.destroy(t),this.paintVertexBuffers)this.paintVertexBuffers[e].destroy(t);for(var r in this.vaos)this.vaos[r].destroy(t);for(var n in this.secondVaos)this.secondVaos[n].destroy(t)}},{"../render/vertex_array_object":329,"../util/util":414,"./buffer":306}],308:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("./load_geometry"),a=t("./bucket").EXTENT,o=t("feature-filter"),s=t("../util/struct_array"),l=t("grid-index"),c=t("../util/dictionary_coder"),u=t("vector-tile"),f=t("pbf"),h=t("../util/vectortile_to_geojson"),d=t("../util/util").arraysIntersect,p=t("../util/intersection_tests"),m=p.multiPolygonIntersectsBufferedMultiPoint,v=p.multiPolygonIntersectsMultiPolygon,g=p.multiPolygonIntersectsBufferedMultiLine,y=new s({members:[{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"}]});function b(t,e,r){if(t.grid){var n=t,i=e;t=n.coord,e=n.overscaling,this.grid=new l(n.grid),this.featureIndexArray=new y(n.featureIndexArray),this.rawTileData=i,this.bucketLayerIDs=n.bucketLayerIDs}else this.grid=new l(a,16,0),this.featureIndexArray=new y;this.coord=t,this.overscaling=e,this.x=t.x,this.y=t.y,this.z=t.z-Math.log(e)/Math.LN2,this.setCollisionTile(r)}function x(t){return Math.sqrt(t[0]*t[0]+t[1]*t[1])}function _(t,e){return e-t}function w(t){return t["line-gap-width"]>0?t["line-gap-width"]+2*t["line-width"]:t["line-width"]}function M(t,e,r,i,a){if(!e[0]&&!e[1])return t;e=n.convert(e),"viewport"===r&&e._rotate(-i);for(var o=[],s=0;s<t.length;s++){for(var l=t[s],c=[],u=0;u<l.length;u++)c.push(l[u].sub(e._mult(a)));o.push(c)}return o}function k(t,e){for(var r=[],i=new n(0,0),a=0;a<t.length;a++){for(var o=t[a],s=[],l=0;l<o.length;l++){var c=o[l-1],u=o[l],f=o[l+1],h=0===l?i:u.sub(c)._unit()._perp(),d=l===o.length-1?i:f.sub(u)._unit()._perp(),p=h._add(d)._unit(),m=p.x*d.x+p.y*d.y;p._mult(1/m),s.push(p._mult(e)._add(u))}r.push(s)}return r}e.exports=b,b.prototype.insert=function(t,e,r,n){var a=this.featureIndexArray.length;this.featureIndexArray.emplaceBack(e,r,n);for(var o=i(t),s=0;s<o.length;s++){for(var l=o[s],c=[1/0,1/0,-1/0,-1/0],u=0;u<l.length;u++){var f=l[u];c[0]=Math.min(c[0],f.x),c[1]=Math.min(c[1],f.y),c[2]=Math.max(c[2],f.x),c[3]=Math.max(c[3],f.y)}this.grid.insert(a,c[0],c[1],c[2],c[3])}},b.prototype.setCollisionTile=function(t){this.collisionTile=t},b.prototype.serialize=function(){var t={coord:this.coord,overscaling:this.overscaling,grid:this.grid.toArrayBuffer(),featureIndexArray:this.featureIndexArray.serialize(),bucketLayerIDs:this.bucketLayerIDs};return{data:t,transferables:[t.grid,t.featureIndexArray.arrayBuffer]}},b.prototype.query=function(t,e){this.vtLayers||(this.vtLayers=new u.VectorTile(new f(new Uint8Array(this.rawTileData))).layers,this.sourceLayerCoder=new c(this.vtLayers?Object.keys(this.vtLayers).sort():["_geojsonTileLayer"]));var r={},i=t.params||{},s=a/t.tileSize/t.scale,l=o(i.filter),h=0;for(var d in e){var p=e[d],m=p.paint,v=0;"line"===p.type?v=w(m)/2+Math.abs(m["line-offset"])+x(m["line-translate"]):"fill"===p.type?v=x(m["fill-translate"]):"circle"===p.type&&(v=m["circle-radius"]+x(m["circle-translate"])),h=Math.max(h,v*s)}for(var g=t.queryGeometry.map(function(t){return t.map(function(t){return new n(t.x,t.y)})}),y=1/0,b=1/0,M=-1/0,k=-1/0,A=0;A<g.length;A++)for(var T=g[A],E=0;E<T.length;E++){var S=T[E];y=Math.min(y,S.x),b=Math.min(b,S.y),M=Math.max(M,S.x),k=Math.max(k,S.y)}var L=this.grid.query(y-h,b-h,M+h,k+h);L.sort(_),this.filterMatching(r,L,this.featureIndexArray,g,l,i.layers,e,t.bearing,s);var C=this.collisionTile.queryRenderedSymbols(y,b,M,k,t.scale);return C.sort(),this.filterMatching(r,C,this.collisionTile.collisionBoxArray,g,l,i.layers,e,t.bearing,s),r},b.prototype.filterMatching=function(t,e,r,n,a,o,s,l,c){for(var u,f=0;f<e.length;f++){var p=e[f];if(p!==u){u=p;var y=r.get(p),b=this.bucketLayerIDs[y.bucketIndex];if(!o||d(o,b)){var x=this.sourceLayerCoder.decode(y.sourceLayerIndex),_=this.vtLayers[x].feature(y.featureIndex);if(a(_))for(var A=null,T=0;T<b.length;T++){var E=b[T];if(!(o&&o.indexOf(E)<0)){var S=s[E];if(S){var L;if("symbol"!==S.type){A||(A=i(_));var C=S.paint;if("line"===S.type){L=M(n,C["line-translate"],C["line-translate-anchor"],l,c);var P=w(C)/2*c;if(C["line-offset"]&&(A=k(A,C["line-offset"]*c)),!g(L,A,P))continue}else if("fill"===S.type){if(L=M(n,C["fill-translate"],C["fill-translate-anchor"],l,c),!v(L,A))continue}else if("circle"===S.type){L=M(n,C["circle-translate"],C["circle-translate-anchor"],l,c);var z=C["circle-radius"]*c;if(!m(L,A,z))continue}}var O=new h(_,this.z,this.x,this.y);O.layer=S.serialize({includeRefProperties:!0});var D=t[E];void 0===D&&(D=t[E]=[]),D.push(O)}}}}}}}},{"../util/dictionary_coder":404,"../util/intersection_tests":409,"../util/struct_array":412,"../util/util":414,"../util/vectortile_to_geojson":415,"./bucket":301,"./load_geometry":309,"feature-filter":141,"grid-index":254,pbf:451,"point-geometry":458,"vector-tile":544}],309:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./bucket").EXTENT,a=t("assert");function o(t){return{min:-1*Math.pow(2,t-1),max:Math.pow(2,t-1)-1}}var s={15:o(15),16:o(16)};e.exports=function(t,e){var r=s[e||16];a(r);for(var o=i/t.extent,l=t.loadGeometry(),c=0;c<l.length;c++)for(var u=l[c],f=0;f<u.length;f++){var h=u[f];h.x=Math.round(h.x*o),h.y=Math.round(h.y*o),(h.x<r.min||h.x>r.max||h.y<r.min||h.y>r.max)&&n.warnOnce("Geometry exceeds allowed extent, reduce your vector tile buffer size")}return l}},{"../util/util":414,"./bucket":301,assert:51}],310:[function(t,e,r){"use strict";function n(t,e,r){this.column=t,this.row=e,this.zoom=r}e.exports=n,n.prototype={clone:function(){return new n(this.column,this.row,this.zoom)},zoomTo:function(t){return this.clone()._zoomTo(t)},sub:function(t){return this.clone()._sub(t)},_zoomTo:function(t){var e=Math.pow(2,t-this.zoom);return this.column*=e,this.row*=e,this.zoom=t,this},_sub:function(t){return t=t.zoomTo(this.zoom),this.column-=t.column,this.row-=t.row,this}}},{}],311:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util").wrap;function i(t,e){if(isNaN(t)||isNaN(e))throw new Error("Invalid LngLat object: ("+t+", "+e+")");if(this.lng=+t,this.lat=+e,this.lat>90||this.lat<-90)throw new Error("Invalid LngLat latitude value: must be between -90 and 90")}i.prototype.wrap=function(){return new i(n(this.lng,-180,180),this.lat)},i.prototype.toArray=function(){return[this.lng,this.lat]},i.prototype.toString=function(){return"LngLat("+this.lng+", "+this.lat+")"},i.convert=function(t){return t instanceof i?t:Array.isArray(t)?new i(t[0],t[1]):t}},{"../util/util":414}],312:[function(t,e,r){"use strict";e.exports=i;var n=t("./lng_lat");function i(t,e){t&&(e?this.extend(t).extend(e):4===t.length?this.extend([t[0],t[1]]).extend([t[2],t[3]]):this.extend(t[0]).extend(t[1]))}i.prototype={extend:function(t){var e,r,a=this._sw,o=this._ne;if(t instanceof n)e=t,r=t;else{if(!(t instanceof i))return t?this.extend(n.convert(t)||i.convert(t)):this;if(e=t._sw,r=t._ne,!e||!r)return this}return a||o?(a.lng=Math.min(e.lng,a.lng),a.lat=Math.min(e.lat,a.lat),o.lng=Math.max(r.lng,o.lng),o.lat=Math.max(r.lat,o.lat)):(this._sw=new n(e.lng,e.lat),this._ne=new n(r.lng,r.lat)),this},getCenter:function(){return new n((this._sw.lng+this._ne.lng)/2,(this._sw.lat+this._ne.lat)/2)},getSouthWest:function(){return this._sw},getNorthEast:function(){return this._ne},getNorthWest:function(){return new n(this.getWest(),this.getNorth())},getSouthEast:function(){return new n(this.getEast(),this.getSouth())},getWest:function(){return this._sw.lng},getSouth:function(){return this._sw.lat},getEast:function(){return this._ne.lng},getNorth:function(){return this._ne.lat},toArray:function(){return[this._sw.toArray(),this._ne.toArray()]},toString:function(){return"LngLatBounds("+this._sw.toString()+", "+this._ne.toString()+")"}},i.convert=function(t){return!t||t instanceof i?t:new i(t)}},{"./lng_lat":311}],313:[function(t,e,r){"use strict";var n=t("./lng_lat"),i=t("point-geometry"),a=t("./coordinate"),o=t("../util/util").wrap,s=t("../util/interpolate"),l=t("../source/tile_coord"),c=t("../data/bucket").EXTENT,u=t("gl-matrix"),f=u.vec4,h=u.mat4,d=u.mat2;function p(t,e){this.tileSize=512,this._minZoom=t||0,this._maxZoom=e||22,this.latRange=[-85.05113,85.05113],this.width=0,this.height=0,this._center=new n(0,0),this.zoom=0,this.angle=0,this._altitude=1.5,this._pitch=0,this._unmodified=!0}e.exports=p,p.prototype={get minZoom(){return this._minZoom},set minZoom(t){this._minZoom!==t&&(this._minZoom=t,this.zoom=Math.max(this.zoom,t))},get maxZoom(){return this._maxZoom},set maxZoom(t){this._maxZoom!==t&&(this._maxZoom=t,this.zoom=Math.min(this.zoom,t))},get worldSize(){return this.tileSize*this.scale},get centerPoint(){return this.size._div(2)},get size(){return new i(this.width,this.height)},get bearing(){return-this.angle/Math.PI*180},set bearing(t){var e=-o(t,-180,180)*Math.PI/180;this.angle!==e&&(this._unmodified=!1,this.angle=e,this._calcMatrices(),this.rotationMatrix=d.create(),d.rotate(this.rotationMatrix,this.rotationMatrix,this.angle))},get pitch(){return this._pitch/Math.PI*180},set pitch(t){var e=Math.min(60,t)/180*Math.PI;this._pitch!==e&&(this._unmodified=!1,this._pitch=e,this._calcMatrices())},get altitude(){return this._altitude},set altitude(t){var e=Math.max(.75,t);this._altitude!==e&&(this._unmodified=!1,this._altitude=e,this._calcMatrices())},get zoom(){return this._zoom},set zoom(t){var e=Math.min(Math.max(t,this.minZoom),this.maxZoom);this._zoom!==e&&(this._unmodified=!1,this._zoom=e,this.scale=this.zoomScale(e),this.tileZoom=Math.floor(e),this.zoomFraction=e-this.tileZoom,this._calcMatrices(),this._constrain())},get center(){return this._center},set center(t){t.lat===this._center.lat&&t.lng===this._center.lng||(this._unmodified=!1,this._center=t,this._calcMatrices(),this._constrain())},coveringZoomLevel:function(t){return(t.roundZoom?Math.round:Math.floor)(this.zoom+this.scaleZoom(this.tileSize/t.tileSize))},coveringTiles:function(t){var e=this.coveringZoomLevel(t),r=e;if(e<t.minzoom)return[];e>t.maxzoom&&(e=t.maxzoom);var n=this,a=n.locationCoordinate(n.center)._zoomTo(e),o=new i(a.column-.5,a.row-.5);return l.cover(e,[n.pointCoordinate(new i(0,0))._zoomTo(e),n.pointCoordinate(new i(n.width,0))._zoomTo(e),n.pointCoordinate(new i(n.width,n.height))._zoomTo(e),n.pointCoordinate(new i(0,n.height))._zoomTo(e)],t.reparseOverscaled?r:e).sort(function(t,e){return o.dist(t)-o.dist(e)})},resize:function(t,e){this.width=t,this.height=e,this.pixelsToGLUnits=[2/t,-2/e],this._calcMatrices(),this._constrain()},get unmodified(){return this._unmodified},zoomScale:function(t){return Math.pow(2,t)},scaleZoom:function(t){return Math.log(t)/Math.LN2},project:function(t,e){return new i(this.lngX(t.lng,e),this.latY(t.lat,e))},unproject:function(t,e){return new n(this.xLng(t.x,e),this.yLat(t.y,e))},get x(){return this.lngX(this.center.lng)},get y(){return this.latY(this.center.lat)},get point(){return new i(this.x,this.y)},lngX:function(t,e){return(180+t)*(e||this.worldSize)/360},latY:function(t,e){return(180-180/Math.PI*Math.log(Math.tan(Math.PI/4+t*Math.PI/360)))*(e||this.worldSize)/360},xLng:function(t,e){return 360*t/(e||this.worldSize)-180},yLat:function(t,e){var r=180-360*t/(e||this.worldSize);return 360/Math.PI*Math.atan(Math.exp(r*Math.PI/180))-90},panBy:function(t){var e=this.centerPoint._add(t);this.center=this.pointLocation(e)},setLocationAtPoint:function(t,e){var r=this.locationCoordinate(t),n=this.pointCoordinate(e),i=this.pointCoordinate(this.centerPoint),a=n._sub(r);this._unmodified=!1,this.center=this.coordinateLocation(i._sub(a))},locationPoint:function(t){return this.coordinatePoint(this.locationCoordinate(t))},pointLocation:function(t){return this.coordinateLocation(this.pointCoordinate(t))},locationCoordinate:function(t){var e=this.zoomScale(this.tileZoom)/this.worldSize,r=n.convert(t);return new a(this.lngX(r.lng)*e,this.latY(r.lat)*e,this.tileZoom)},coordinateLocation:function(t){var e=this.zoomScale(t.zoom);return new n(this.xLng(t.column,e),this.yLat(t.row,e))},pointCoordinate:function(t){var e=[t.x,t.y,0,1],r=[t.x,t.y,1,1];f.transformMat4(e,e,this.pixelMatrixInverse),f.transformMat4(r,r,this.pixelMatrixInverse);var n=e[3],i=r[3],o=e[0]/n,l=r[0]/i,c=e[1]/n,u=r[1]/i,h=e[2]/n,d=r[2]/i,p=h===d?0:(0-h)/(d-h),m=this.worldSize/this.zoomScale(this.tileZoom);return new a(s(o,l,p)/m,s(c,u,p)/m,this.tileZoom)},coordinatePoint:function(t){var e=this.worldSize/this.zoomScale(t.zoom),r=[t.column*e,t.row*e,0,1];return f.transformMat4(r,r,this.pixelMatrix),new i(r[0]/r[3],r[1]/r[3])},calculatePosMatrix:function(t,e){void 0===e&&(e=1/0),t instanceof l&&(t=t.toCoordinate(e));var r=Math.min(t.zoom,e),n=this.worldSize/Math.pow(2,r),i=new Float64Array(16);return h.identity(i),h.translate(i,i,[t.column*n,t.row*n,0]),h.scale(i,i,[n/c,n/c,1]),h.multiply(i,this.projMatrix,i),new Float32Array(i)},_constrain:function(){if(this.center&&this.width&&this.height&&!this._constraining){this._constraining=!0;var t,e,r,n,a,o,s,l,c=this.size,u=this._unmodified;this.latRange&&(t=this.latY(this.latRange[1]),a=(e=this.latY(this.latRange[0]))-t<c.y?c.y/(e-t):0),this.lngRange&&(r=this.lngX(this.lngRange[0]),o=(n=this.lngX(this.lngRange[1]))-r<c.x?c.x/(n-r):0);var f=Math.max(o||0,a||0);if(f)return this.center=this.unproject(new i(o?(n+r)/2:this.x,a?(e+t)/2:this.y)),this.zoom+=this.scaleZoom(f),this._unmodified=u,void(this._constraining=!1);if(this.latRange){var h=this.y,d=c.y/2;h-d<t&&(l=t+d),h+d>e&&(l=e-d)}if(this.lngRange){var p=this.x,m=c.x/2;p-m<r&&(s=r+m),p+m>n&&(s=n-m)}void 0===s&&void 0===l||(this.center=this.unproject(new i(void 0!==s?s:this.x,void 0!==l?l:this.y))),this._unmodified=u,this._constraining=!1}},_calcMatrices:function(){if(this.height){var t=Math.atan(.5/this.altitude),e=Math.sin(t)*this.altitude/Math.sin(Math.PI/2-this._pitch-t),r=Math.cos(Math.PI/2-this._pitch)*e+this.altitude,n=new Float64Array(16);if(h.perspective(n,2*Math.atan(this.height/2/this.altitude),this.width/this.height,.1,r),h.translate(n,n,[0,0,-this.altitude]),h.scale(n,n,[1,-1,1/this.height]),h.rotateX(n,n,this._pitch),h.rotateZ(n,n,this.angle),h.translate(n,n,[-this.x,-this.y,0]),this.projMatrix=n,n=h.create(),h.scale(n,n,[this.width/2,-this.height/2,1]),h.translate(n,n,[1,-1,0]),this.pixelMatrix=h.multiply(new Float64Array(16),n,this.projMatrix),!(n=h.invert(new Float64Array(16),this.pixelMatrix)))throw new Error("failed to invert matrix");this.pixelMatrixInverse=n}}}},{"../data/bucket":301,"../source/tile_coord":341,"../util/interpolate":408,"../util/util":414,"./coordinate":310,"./lng_lat":311,"gl-matrix":198,"point-geometry":458}],314:[function(t,e,r){"use strict";var n={" 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a,o,s,l,c,u,f,h,d=[];for(a=0,o=t.length;a<o;a++)if(c=n[t[a]]){for(h=null,s=0,l=c[1].length;s<l;s+=2)-1===c[1][s]&&-1===c[1][s+1]?h=null:(u=e+c[1][s]*i,f=r-c[1][s+1]*i,h&&d.push(h.x,h.y,u,f),h={x:u,y:f});e+=c[0]*i}return d}},{}],315:[function(t,e,r){"use strict";var n=e.exports={};n.version=t("../package.json").version,n.Map=t("./ui/map"),n.Control=t("./ui/control/control"),n.Navigation=t("./ui/control/navigation"),n.Geolocate=t("./ui/control/geolocate"),n.Attribution=t("./ui/control/attribution"),n.Popup=t("./ui/popup"),n.Marker=t("./ui/marker"),n.Style=t("./style/style"),n.LngLat=t("./geo/lng_lat"),n.LngLatBounds=t("./geo/lng_lat_bounds"),n.Point=t("point-geometry"),n.Evented=t("./util/evented"),n.util=t("./util/util"),n.supported=t("./util/browser").supported;var i=t("./util/ajax");n.util.getJSON=i.getJSON,n.util.getArrayBuffer=i.getArrayBuffer;var a=t("./util/config");n.config=a,Object.defineProperty(n,"accessToken",{get:function(){return a.ACCESS_TOKEN},set:function(t){a.ACCESS_TOKEN=t}})},{"../package.json":416,"./geo/lng_lat":311,"./geo/lng_lat_bounds":312,"./style/style":350,"./ui/control/attribution":381,"./ui/control/control":382,"./ui/control/geolocate":383,"./ui/control/navigation":384,"./ui/map":393,"./ui/marker":394,"./ui/popup":395,"./util/ajax":397,"./util/browser":398,"./util/config":403,"./util/evented":406,"./util/util":414,"point-geometry":458}],316:[function(t,e,r){"use strict";var n=t("assert");e.exports=function(t){for(var e={define:{},initialize:{}},r=0;r<t.length;r++){var i=t[r];n("u_"===i.name.slice(0,2));var a="{precision} "+(1===i.components?"float":"vec"+i.components);e.define[i.name.slice(2)]="uniform "+a+" "+i.name+";\n",e.initialize[i.name.slice(2)]=a+" "+i.name.slice(2)+" = "+i.name+";\n"}return e}},{assert:51}],317:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units"),i=t("./create_uniform_pragmas"),a=512;e.exports=function(t,e,r){var o,s=t.gl,l=t.transform,c=r.paint["background-color"],u=r.paint["background-pattern"],f=r.paint["background-opacity"],h=u?t.spriteAtlas.getPosition(u.from,!0):null,d=u?t.spriteAtlas.getPosition(u.to,!0):null;if(t.setDepthSublayer(0),h&&d){if(t.isOpaquePass)return;o=t.useProgram("pattern"),s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,h.tl),s.uniform2fv(o.u_pattern_br_a,h.br),s.uniform2fv(o.u_pattern_tl_b,d.tl),s.uniform2fv(o.u_pattern_br_b,d.br),s.uniform1f(o.u_opacity,f),s.uniform1f(o.u_mix,u.t),s.uniform2fv(o.u_pattern_size_a,h.size),s.uniform2fv(o.u_pattern_size_b,d.size),s.uniform1f(o.u_scale_a,u.fromScale),s.uniform1f(o.u_scale_b,u.toScale),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),t.tileExtentPatternVAO.bind(s,o,t.tileExtentBuffer)}else{if(t.isOpaquePass!==(1===c[3]))return;var p=i([{name:"u_color",components:4},{name:"u_opacity",components:1}]);o=t.useProgram("fill",[],p,p),s.uniform4fv(o.u_color,c),s.uniform1f(o.u_opacity,f),t.tileExtentVAO.bind(s,o,t.tileExtentBuffer)}s.disable(s.STENCIL_TEST);for(var m=l.coveringTiles({tileSize:a}),v=0;v<m.length;v++){var g=m[v];if(h&&d){var y={coord:g,tileSize:a};s.uniform1f(o.u_tile_units_to_pixels,1/n(y,1,t.transform.tileZoom));var b=y.tileSize*Math.pow(2,t.transform.tileZoom-y.coord.z),x=b*(y.coord.x+g.w*Math.pow(2,y.coord.z)),_=b*y.coord.y;s.uniform2f(o.u_pixel_coord_upper,x>>16,_>>16),s.uniform2f(o.u_pixel_coord_lower,65535&x,65535&_)}s.uniformMatrix4fv(o.u_matrix,!1,t.transform.calculatePosMatrix(g)),s.drawArrays(s.TRIANGLE_STRIP,0,t.tileExtentBuffer.length)}s.stencilMask(0),s.stencilFunc(s.EQUAL,128,128)}},{"../source/pixels_to_tile_units":335,"./create_uniform_pragmas":316}],318:[function(t,e,r){"use strict";var n=t("../util/browser");e.exports=function(t,e,r,i){if(t.isOpaquePass)return;var a=t.gl;t.setDepthSublayer(0),t.depthMask(!1),a.disable(a.STENCIL_TEST);for(var o=0;o<i.length;o++){var s=i[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.circle;if(u){var f=c.paintAttributes.circle[r.id],h=t.useProgram("circle",f.defines,f.vertexPragmas,f.fragmentPragmas);"map"===r.paint["circle-pitch-scale"]?(a.uniform1i(h.u_scale_with_map,!0),a.uniform2f(h.u_extrude_scale,t.transform.pixelsToGLUnits[0]*t.transform.altitude,t.transform.pixelsToGLUnits[1]*t.transform.altitude)):(a.uniform1i(h.u_scale_with_map,!1),a.uniform2fv(h.u_extrude_scale,t.transform.pixelsToGLUnits)),a.uniform1f(h.u_devicepixelratio,n.devicePixelRatio),a.uniformMatrix4fv(h.u_matrix,!1,t.translatePosMatrix(s.posMatrix,l,r.paint["circle-translate"],r.paint["circle-translate-anchor"])),c.setUniforms(a,"circle",h,r,{zoom:t.transform.zoom});for(var d=0;d<u.length;d++){var p=u[d];p.vaos[r.id].bind(a,h,p.layoutVertexBuffer,p.elementBuffer,p.paintVertexBuffers[r.id]),a.drawElements(a.TRIANGLES,3*p.elementBuffer.length,a.UNSIGNED_SHORT,0)}}}}}},{"../util/browser":398}],319:[function(t,e,r){"use strict";e.exports=function(t,e,r,n){var i=t.gl;i.enable(i.STENCIL_TEST);for(var a=t.useProgram("collisionbox"),o=0;o<n.length;o++){var s=n[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.collisionBox;if(u&&u.length){var f=u[0];0!==f.layoutVertexBuffer.length&&(i.uniformMatrix4fv(a.u_matrix,!1,s.posMatrix),t.enableTileClippingMask(s),t.lineWidth(1),i.uniform1f(a.u_scale,Math.pow(2,t.transform.zoom-l.coord.z)),i.uniform1f(a.u_zoom,10*t.transform.zoom),i.uniform1f(a.u_maxzoom,10*(l.coord.z+1)),f.vaos[r.id].bind(i,a,f.layoutVertexBuffer),i.drawArrays(i.LINES,0,f.layoutVertexBuffer.length))}}}}},{}],320:[function(t,e,r){"use strict";var n=t("../lib/debugtext"),i=t("../util/browser"),a=t("gl-matrix").mat4,o=t("../data/bucket").EXTENT,s=t("../data/buffer"),l=t("./vertex_array_object");function c(t,e,r){var c=t.gl;c.disable(c.STENCIL_TEST),t.lineWidth(1*i.devicePixelRatio);var u=r.posMatrix,f=t.useProgram("debug");c.uniformMatrix4fv(f.u_matrix,!1,u),c.uniform4f(f.u_color,1,0,0,1),t.debugVAO.bind(c,f,t.debugBuffer),c.drawArrays(c.LINE_STRIP,0,t.debugBuffer.length);for(var h=n(r.toString(),50,200,5),d=new t.PosArray,p=0;p<h.length;p+=2)d.emplaceBack(h[p],h[p+1]);var m=new s(d.serialize(),t.PosArray.serialize(),s.BufferType.VERTEX);(new l).bind(c,f,m),c.uniform4f(f.u_color,1,1,1,1);for(var v=e.getTile(r).tileSize,g=o/(Math.pow(2,t.transform.zoom-r.z)*v),y=[[-1,-1],[-1,1],[1,-1],[1,1]],b=0;b<y.length;b++){var x=y[b];c.uniformMatrix4fv(f.u_matrix,!1,a.translate([],u,[g*x[0],g*x[1],0])),c.drawArrays(c.LINES,0,m.length)}c.uniform4f(f.u_color,0,0,0,1),c.uniformMatrix4fv(f.u_matrix,!1,u),c.drawArrays(c.LINES,0,m.length)}e.exports=function(t,e,r){if(t.isOpaquePass)return;if(!t.options.debug)return;for(var n=0;n<r.length;n++)c(t,e,r[n])}},{"../data/bucket":301,"../data/buffer":306,"../lib/debugtext":314,"../util/browser":398,"./vertex_array_object":329,"gl-matrix":198}],321:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units");function i(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s=a.bufferGroups.fill;if(s){var l,c=t.gl,u=r.paint["fill-pattern"];if(u)l=t.useProgram("pattern"),o(u,r.paint["fill-opacity"],i,n,t,l),c.activeTexture(c.TEXTURE0),t.spriteAtlas.bind(c,!0);else{var f=a.paintAttributes.fill[r.id];l=t.useProgram("fill",f.defines,f.vertexPragmas,f.fragmentPragmas),a.setUniforms(c,"fill",l,r,{zoom:t.transform.zoom})}c.uniformMatrix4fv(l.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),t.enableTileClippingMask(n);for(var h=0;h<s.length;h++){var d=s[h];d.vaos[r.id].bind(c,l,d.layoutVertexBuffer,d.elementBuffer,d.paintVertexBuffers[r.id]),c.drawElements(c.TRIANGLES,d.elementBuffer.length,c.UNSIGNED_SHORT,0)}}}}function a(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s,l=t.gl,c=a.bufferGroups.fill,u=r.paint["fill-pattern"],f=r.paint["fill-opacity"],h=r.getPaintProperty("fill-outline-color");if(u&&!h)s=t.useProgram("outlinepattern"),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight);else{var d=a.paintAttributes.fill[r.id];s=t.useProgram("outline",d.defines,d.vertexPragmas,d.fragmentPragmas),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight),l.uniform1f(s.u_opacity,f),a.setUniforms(l,"fill",s,r,{zoom:t.transform.zoom})}l.uniformMatrix4fv(s.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),u&&o(u,f,i,n,t,s),t.enableTileClippingMask(n);for(var p=0;p<c.length;p++){var m=c[p];m.secondVaos[r.id].bind(l,s,m.layoutVertexBuffer,m.elementBuffer2,m.paintVertexBuffers[r.id]),l.drawElements(l.LINES,2*m.elementBuffer2.length,l.UNSIGNED_SHORT,0)}}}function o(t,e,r,i,a,o){var s=a.gl,l=a.spriteAtlas.getPosition(t.from,!0),c=a.spriteAtlas.getPosition(t.to,!0);if(l&&c){s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,l.tl),s.uniform2fv(o.u_pattern_br_a,l.br),s.uniform2fv(o.u_pattern_tl_b,c.tl),s.uniform2fv(o.u_pattern_br_b,c.br),s.uniform1f(o.u_opacity,e),s.uniform1f(o.u_mix,t.t),s.uniform1f(o.u_tile_units_to_pixels,1/n(r,1,a.transform.tileZoom)),s.uniform2fv(o.u_pattern_size_a,l.size),s.uniform2fv(o.u_pattern_size_b,c.size),s.uniform1f(o.u_scale_a,t.fromScale),s.uniform1f(o.u_scale_b,t.toScale);var u=r.tileSize*Math.pow(2,a.transform.tileZoom-r.coord.z),f=u*(r.coord.x+i.w*Math.pow(2,r.coord.z)),h=u*r.coord.y;s.uniform2f(o.u_pixel_coord_upper,f>>16,h>>16),s.uniform2f(o.u_pixel_coord_lower,65535&f,65535&h),s.activeTexture(s.TEXTURE0),a.spriteAtlas.bind(s,!0)}}e.exports=function(t,e,r,n){var o,s=t.gl;s.enable(s.STENCIL_TEST),o=!r.paint["fill-pattern"]&&(r.isPaintValueFeatureConstant("fill-color")&&r.isPaintValueFeatureConstant("fill-opacity")&&1===r.paint["fill-color"][3]&&1===r.paint["fill-opacity"]);if(t.isOpaquePass===o){t.setDepthSublayer(1);for(var l=0;l<n.length;l++)i(t,e,r,n[l])}if(!t.isOpaquePass&&r.paint["fill-antialias"]){t.lineWidth(2),t.depthMask(!1);var c=r.getPaintProperty("fill-outline-color");(c||!r.paint["fill-pattern"])&&c?t.setDepthSublayer(2):t.setDepthSublayer(0);for(var u=0;u<n.length;u++)a(t,e,r,n[u])}}},{"../source/pixels_to_tile_units":335}],322:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat2,a=t("../source/pixels_to_tile_units");e.exports=function(t,e,r,o){if(!t.isOpaquePass){t.setDepthSublayer(0),t.depthMask(!1);var s=t.gl;if(s.enable(s.STENCIL_TEST),!(r.paint["line-width"]<=0)){var l=1/n.devicePixelRatio,c=r.paint["line-blur"]+l,u=r.paint["line-color"],f=t.transform,h=i.create();i.scale(h,h,[1,Math.cos(f._pitch)]),i.rotate(h,h,t.transform.angle);var d,p,m,v,g,y=Math.sqrt(f.height*f.height/4*(1+f.altitude*f.altitude)),b=(y+f.height/2*Math.tan(f._pitch))/y-1,x=r.paint["line-dasharray"],_=r.paint["line-pattern"];if(x)d=t.useProgram("linesdfpattern"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),p=t.lineAtlas.getDash(x.from,"round"===r.layout["line-cap"]),m=t.lineAtlas.getDash(x.to,"round"===r.layout["line-cap"]),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.lineAtlas.bind(s),s.uniform1f(d.u_tex_y_a,p.y),s.uniform1f(d.u_tex_y_b,m.y),s.uniform1f(d.u_mix,x.t),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h);else if(_){if(v=t.spriteAtlas.getPosition(_.from,!0),g=t.spriteAtlas.getPosition(_.to,!0),!v||!g)return;d=t.useProgram("linepattern"),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform2fv(d.u_pattern_tl_a,v.tl),s.uniform2fv(d.u_pattern_br_a,v.br),s.uniform2fv(d.u_pattern_tl_b,g.tl),s.uniform2fv(d.u_pattern_br_b,g.br),s.uniform1f(d.u_fade,_.t),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h)}else d=t.useProgram("line"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]);for(var w=0;w<o.length;w++){var M=o[w],k=e.getTile(M),A=k.getBucket(r);if(A){var T=A.bufferGroups.line;if(T){t.enableTileClippingMask(M);var E=t.translatePosMatrix(M.posMatrix,k,r.paint["line-translate"],r.paint["line-translate-anchor"]);s.uniformMatrix4fv(d.u_matrix,!1,E);var S=1/a(k,1,t.transform.zoom);if(x){var L=p.width*x.fromScale,C=m.width*x.toScale,P=[1/a(k,L,t.transform.tileZoom),-p.height/2],z=[1/a(k,C,t.transform.tileZoom),-m.height/2],O=t.lineAtlas.width/(256*Math.min(L,C)*n.devicePixelRatio)/2;s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_patternscale_a,P),s.uniform2fv(d.u_patternscale_b,z),s.uniform1f(d.u_sdfgamma,O)}else _?(s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_pattern_size_a,[a(k,v.size[0]*_.fromScale,t.transform.tileZoom),g.size[1]]),s.uniform2fv(d.u_pattern_size_b,[a(k,g.size[0]*_.toScale,t.transform.tileZoom),g.size[1]])):s.uniform1f(d.u_ratio,S);for(var D=0;D<T.length;D++){var I=T[D];I.vaos[r.id].bind(s,d,I.layoutVertexBuffer,I.elementBuffer),s.drawElements(s.TRIANGLES,3*I.elementBuffer.length,s.UNSIGNED_SHORT,0)}}}}}}}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"gl-matrix":198}],323:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/struct_array");function a(t,e,r,n){if(!t.isOpaquePass){var i=t.gl;i.enable(i.DEPTH_TEST),t.depthMask(!0),i.depthFunc(i.LESS);for(var a=n.length&&n[0].z,s=0;s<n.length;s++){var l=n[s];t.setDepthSublayer(l.z-a),o(t,e,r,l)}i.depthFunc(i.LEQUAL)}}function o(t,e,r,i){var a=t.gl;a.disable(a.STENCIL_TEST);var o,s,l=e.getTile(i),c=t.transform.calculatePosMatrix(i,e.maxzoom),u=t.useProgram("raster");a.uniformMatrix4fv(u.u_matrix,!1,c),a.uniform1f(u.u_brightness_low,r.paint["raster-brightness-min"]),a.uniform1f(u.u_brightness_high,r.paint["raster-brightness-max"]),a.uniform1f(u.u_saturation_factor,(o=r.paint["raster-saturation"])>0?1-1/(1.001-o):-o),a.uniform1f(u.u_contrast_factor,(s=r.paint["raster-contrast"])>0?1/(1-s):1+s),a.uniform3fv(u.u_spin_weights,function(t){t*=Math.PI/180;var e=Math.sin(t),r=Math.cos(t);return[(2*r+1)/3,(-Math.sqrt(3)*e-r+1)/3,(Math.sqrt(3)*e-r+1)/3]}(r.paint["raster-hue-rotate"]));var f,h,d=l.source&&l.source.findLoadedParent(i,0,{}),p=function(t,e,r,i){var a=[1,0],o=r.paint["raster-fade-duration"];if(t.source&&o>0){var s=(new Date).getTime(),l=(s-t.timeAdded)/o,c=e?(s-e.timeAdded)/o:-1,u=i.coveringZoomLevel(t.source),f=!!e&&Math.abs(e.coord.z-u)>Math.abs(t.coord.z-u);!e||f?(a[0]=n.clamp(l,0,1),a[1]=1-a[0]):(a[0]=n.clamp(1-c,0,1),a[1]=1-a[0])}var h=r.paint["raster-opacity"];return a[0]*=h,a[1]*=h,a}(l,d,r,t.transform);a.activeTexture(a.TEXTURE0),a.bindTexture(a.TEXTURE_2D,l.texture),a.activeTexture(a.TEXTURE1),d?(a.bindTexture(a.TEXTURE_2D,d.texture),f=Math.pow(2,d.coord.z-l.coord.z),h=[l.coord.x*f%1,l.coord.y*f%1]):(a.bindTexture(a.TEXTURE_2D,l.texture),p[1]=0),a.uniform2fv(u.u_tl_parent,h||[0,0]),a.uniform1f(u.u_scale_parent,f||1),a.uniform1f(u.u_buffer_scale,1),a.uniform1f(u.u_opacity0,p[0]),a.uniform1f(u.u_opacity1,p[1]),a.uniform1i(u.u_image0,0),a.uniform1i(u.u_image1,1);var m=l.boundsBuffer||t.rasterBoundsBuffer;(l.boundsVAO||t.rasterBoundsVAO).bind(a,u,m),a.drawArrays(a.TRIANGLE_STRIP,0,m.length)}e.exports=a,a.RasterBoundsArray=new i({members:[{name:"a_pos",type:"Int16",components:2},{name:"a_texture_pos",type:"Int16",components:2}]})},{"../util/struct_array":412,"../util/util":414}],324:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("./draw_collision_debug"),a=t("../source/pixels_to_tile_units");function o(t,e,r,n,i,a,o,l,c,u,f,h,d,p,m){for(var v=0;v<n.length;v++){var g=e.getTile(n[v]),y=g.getBucket(r);if(y){var b=y.bufferGroups,x=i?b.glyph:b.icon;x.length&&(t.enableTileClippingMask(n[v]),s(t,r,n[v].posMatrix,g,y,x,i,i||y.sdfIcons,!i&&y.iconsNeedLinear,i?y.adjustedTextSize:y.adjustedIconSize,y.fontstack,a,o,l,c,u,f,h,d,p,m))}}}function s(t,e,r,i,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w){var M,k,A,T=t.gl,E=t.transform,S="map"===m,L="map"===v,C=l?24:1,P=g/C;if(L?(k=a(i,1,t.transform.zoom)*P,A=1/Math.cos(E._pitch),M=[k,k]):(k=t.transform.altitude*P,A=1,M=[E.pixelsToGLUnits[0]*k,E.pixelsToGLUnits[1]*k]),l||t.style.sprite.loaded()){var z=t.useProgram(c?"sdf":"icon");if(T.uniformMatrix4fv(z.u_matrix,!1,t.translatePosMatrix(r,i,d,p)),T.uniform1i(z.u_rotate_with_map,S),T.uniform1i(z.u_pitch_with_map,L),T.uniform2fv(z.u_extrude_scale,M),T.activeTexture(T.TEXTURE0),T.uniform1i(z.u_texture,0),l){var O=h&&t.glyphSource.getGlyphAtlas(h);if(!O)return;O.updateTexture(T),T.uniform2f(z.u_texsize,O.width/4,O.height/4)}else{var D=t.options.rotating||t.options.zooming,I=1!==P||n.devicePixelRatio!==t.spriteAtlas.pixelRatio||u,R=L||t.transform.pitch;t.spriteAtlas.bind(T,c||D||I||R),T.uniform2f(z.u_texsize,t.spriteAtlas.width/4,t.spriteAtlas.height/4)}var N,F=Math.log(g/f)/Math.LN2||0;if(T.uniform1f(z.u_zoom,10*(t.transform.zoom-F)),T.activeTexture(T.TEXTURE1),t.frameHistory.bind(T),T.uniform1i(z.u_fadetexture,1),c){var j=.105*C/g/n.devicePixelRatio;if(y){T.uniform1f(z.u_gamma,(1.19*x/P/8+j)*A),T.uniform4fv(z.u_color,b),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,(6-y/P)/8);for(var B=0;B<s.length;B++)(N=s[B]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}T.uniform1f(z.u_gamma,j*A),T.uniform4fv(z.u_color,w),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,.75),T.uniform1f(z.u_pitch,E.pitch/360*2*Math.PI),T.uniform1f(z.u_bearing,E.bearing/360*2*Math.PI),T.uniform1f(z.u_aspect_ratio,E.width/E.height);for(var U=0;U<s.length;U++)(N=s[U]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}else{T.uniform1f(z.u_opacity,_);for(var V=0;V<s.length;V++)(N=s[V]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}}}e.exports=function(t,e,r,n){if(t.isOpaquePass)return;var a=!(r.layout["text-allow-overlap"]||r.layout["icon-allow-overlap"]||r.layout["text-ignore-placement"]||r.layout["icon-ignore-placement"]),s=t.gl;a?s.disable(s.STENCIL_TEST):s.enable(s.STENCIL_TEST);t.setDepthSublayer(0),t.depthMask(!1),s.disable(s.DEPTH_TEST),o(t,e,r,n,!1,r.paint["icon-translate"],r.paint["icon-translate-anchor"],r.layout["icon-rotation-alignment"],r.layout["icon-rotation-alignment"],r.layout["icon-size"],r.paint["icon-halo-width"],r.paint["icon-halo-color"],r.paint["icon-halo-blur"],r.paint["icon-opacity"],r.paint["icon-color"]),o(t,e,r,n,!0,r.paint["text-translate"],r.paint["text-translate-anchor"],r.layout["text-rotation-alignment"],r.layout["text-pitch-alignment"],r.layout["text-size"],r.paint["text-halo-width"],r.paint["text-halo-color"],r.paint["text-halo-blur"],r.paint["text-opacity"],r.paint["text-color"]),s.enable(s.DEPTH_TEST),e.map.showCollisionBoxes&&i(t,e,r,n)}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"./draw_collision_debug":319}],325:[function(t,e,r){"use strict";function n(){this.changeTimes=new Float64Array(256),this.changeOpacities=new Uint8Array(256),this.opacities=new Uint8ClampedArray(256),this.array=new Uint8Array(this.opacities.buffer),this.fadeDuration=300,this.previousZoom=0,this.firstFrame=!0}e.exports=n,n.prototype.record=function(t){var e,r=Date.now();if(this.firstFrame&&(r=0,this.firstFrame=!1),(t=Math.floor(10*t))<this.previousZoom)for(e=t+1;e<=this.previousZoom;e++)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];else for(e=t;e>this.previousZoom;e--)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];for(e=0;e<256;e++){var n=(r-this.changeTimes[e])/this.fadeDuration*255;this.opacities[e]=e<=t?this.changeOpacities[e]+n:this.changeOpacities[e]-n}this.changed=!0,this.previousZoom=t},n.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.changed&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,256,1,t.ALPHA,t.UNSIGNED_BYTE,this.array),this.changed=!1)):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,256,1,0,t.ALPHA,t.UNSIGNED_BYTE,this.array))}},{}],326:[function(t,e,r){"use strict";var n=t("../util/util");function i(t,e){this.width=t,this.height=e,this.nextRow=0,this.bytes=4,this.data=new Uint8Array(this.width*this.height*this.bytes),this.positions={}}e.exports=i,i.prototype.setSprite=function(t){this.sprite=t},i.prototype.getDash=function(t,e){var r=t.join(",")+e;return this.positions[r]||(this.positions[r]=this.addDash(t,e)),this.positions[r]},i.prototype.addDash=function(t,e){var r=e?7:0,i=2*r+1;if(this.nextRow+i>this.height)return n.warnOnce("LineAtlas out of space"),null;for(var a=0,o=0;o<t.length;o++)a+=t[o];for(var s=this.width/a,l=s/2,c=t.length%2==1,u=-r;u<=r;u++)for(var f=this.nextRow+r+u,h=this.width*f,d=c?-t[t.length-1]:0,p=t[0],m=1,v=0;v<this.width;v++){for(;p<v/s;)d=p,p+=t[m],c&&m===t.length-1&&(p+=t[0]),m++;var g,y=Math.abs(v-d*s),b=Math.abs(v-p*s),x=Math.min(y,b),_=m%2==1;if(e){var w=r?u/r*(l+1):0;if(_){var M=l-Math.abs(w);g=Math.sqrt(x*x+M*M)}else g=l-Math.sqrt(x*x+w*w)}else g=(_?1:-1)*x;this.data[3+4*(h+v)]=Math.max(0,Math.min(255,g+128))}var k={y:(this.nextRow+r+.5)/this.height,height:2*r/this.height,width:a};return this.nextRow+=i,this.dirty=!0,k},i.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.dirty&&(this.dirty=!1,t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.RGBA,t.UNSIGNED_BYTE,this.data))):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width,this.height,0,t.RGBA,t.UNSIGNED_BYTE,this.data))}},{"../util/util":414}],327:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat4,a=t("./frame_history"),o=t("../source/source_cache"),s=t("../data/bucket").EXTENT,l=t("../source/pixels_to_tile_units"),c=t("../util/util"),u=t("../util/struct_array"),f=t("../data/buffer"),h=t("./vertex_array_object"),d=t("./draw_raster").RasterBoundsArray,p=t("./create_uniform_pragmas");function m(t,e){this.gl=t,this.transform=e,this.reusableTextures={},this.preFbos={},this.frameHistory=new a,this.setup(),this.numSublayers=o.maxUnderzooming+o.maxOverzooming+1,this.depthEpsilon=1/Math.pow(2,16),this.lineWidthRange=t.getParameter(t.ALIASED_LINE_WIDTH_RANGE)}e.exports=m,c.extend(m.prototype,t("./painter/use_program")),m.prototype.resize=function(t,e){var r=this.gl;this.width=t*n.devicePixelRatio,this.height=e*n.devicePixelRatio,r.viewport(0,0,this.width,this.height)},m.prototype.setup=function(){var t=this.gl;t.verbose=!0,t.enable(t.BLEND),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),t.enable(t.STENCIL_TEST),t.enable(t.DEPTH_TEST),t.depthFunc(t.LEQUAL),this._depthMask=!1,t.depthMask(!1);var e=this.PosArray=new u({members:[{name:"a_pos",type:"Int16",components:2}]}),r=new e;r.emplaceBack(0,0),r.emplaceBack(s,0),r.emplaceBack(0,s),r.emplaceBack(s,s),this.tileExtentBuffer=new f(r.serialize(),e.serialize(),f.BufferType.VERTEX),this.tileExtentVAO=new h,this.tileExtentPatternVAO=new h;var n=new e;n.emplaceBack(0,0),n.emplaceBack(s,0),n.emplaceBack(s,s),n.emplaceBack(0,s),n.emplaceBack(0,0),this.debugBuffer=new f(n.serialize(),e.serialize(),f.BufferType.VERTEX),this.debugVAO=new h;var i=new d;i.emplaceBack(0,0,0,0),i.emplaceBack(s,0,32767,0),i.emplaceBack(0,s,0,32767),i.emplaceBack(s,s,32767,32767),this.rasterBoundsBuffer=new f(i.serialize(),d.serialize(),f.BufferType.VERTEX),this.rasterBoundsVAO=new h},m.prototype.clearColor=function(){var t=this.gl;t.clearColor(0,0,0,0),t.clear(t.COLOR_BUFFER_BIT)},m.prototype.clearStencil=function(){var t=this.gl;t.clearStencil(0),t.stencilMask(255),t.clear(t.STENCIL_BUFFER_BIT)},m.prototype.clearDepth=function(){var t=this.gl;t.clearDepth(1),this.depthMask(!0),t.clear(t.DEPTH_BUFFER_BIT)},m.prototype._renderTileClippingMasks=function(t){var e=this.gl;e.colorMask(!1,!1,!1,!1),this.depthMask(!1),e.disable(e.DEPTH_TEST),e.enable(e.STENCIL_TEST),e.stencilMask(248),e.stencilOp(e.KEEP,e.KEEP,e.REPLACE);var r=1;this._tileClippingMaskIDs={};for(var n=0;n<t.length;n++){var i=t[n],a=this._tileClippingMaskIDs[i.id]=r++<<3;e.stencilFunc(e.ALWAYS,a,248);var o=p([{name:"u_color",components:4},{name:"u_opacity",components:1}]),s=this.useProgram("fill",[],o,o);e.uniformMatrix4fv(s.u_matrix,!1,i.posMatrix),this.tileExtentVAO.bind(e,s,this.tileExtentBuffer),e.drawArrays(e.TRIANGLE_STRIP,0,this.tileExtentBuffer.length)}e.stencilMask(0),e.colorMask(!0,!0,!0,!0),this.depthMask(!0),e.enable(e.DEPTH_TEST)},m.prototype.enableTileClippingMask=function(t){var e=this.gl;e.stencilFunc(e.EQUAL,this._tileClippingMaskIDs[t.id],248)},m.prototype.prepareBuffers=function(){},m.prototype.bindDefaultFramebuffer=function(){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,null)};var v={symbol:t("./draw_symbol"),circle:t("./draw_circle"),line:t("./draw_line"),fill:t("./draw_fill"),raster:t("./draw_raster"),background:t("./draw_background"),debug:t("./draw_debug")};m.prototype.render=function(t,e){this.style=t,this.options=e,this.lineAtlas=t.lineAtlas,this.spriteAtlas=t.spriteAtlas,this.spriteAtlas.setSprite(t.sprite),this.glyphSource=t.glyphSource,this.frameHistory.record(this.transform.zoom),this.prepareBuffers(),this.clearColor(),this.clearDepth(),this.showOverdrawInspector(e.showOverdrawInspector),this.depthRange=(t._order.length+2)*this.numSublayers*this.depthEpsilon,this.renderPass({isOpaquePass:!0}),this.renderPass({isOpaquePass:!1})},m.prototype.renderPass=function(t){var e=this.style._groups,r=t.isOpaquePass;this.currentLayer=r?this.style._order.length:-1;for(var n=0;n<e.length;n++){var i,a=e[r?e.length-1-n:n],o=this.style.sources[a.source],s=[];if(o){for(s=o.getVisibleCoordinates(),i=0;i<s.length;i++)s[i].posMatrix=this.transform.calculatePosMatrix(s[i],o.maxzoom);this.clearStencil(),o.prepare&&o.prepare(),o.isTileClipped&&this._renderTileClippingMasks(s)}for(r?(this._showOverdrawInspector||this.gl.disable(this.gl.BLEND),this.isOpaquePass=!0):(this.gl.enable(this.gl.BLEND),this.isOpaquePass=!1,s.reverse()),i=0;i<a.length;i++){var l=a[r?a.length-1-i:i];this.currentLayer+=r?-1:1,this.renderLayer(this,o,l,s)}o&&v.debug(this,o,s)}},m.prototype.depthMask=function(t){t!==this._depthMask&&(this._depthMask=t,this.gl.depthMask(t))},m.prototype.renderLayer=function(t,e,r,n){r.isHidden(this.transform.zoom)||("background"===r.type||n.length)&&(this.id=r.id,v[r.type](t,e,r,n))},m.prototype.setDepthSublayer=function(t){var e=1-((1+this.currentLayer)*this.numSublayers+t)*this.depthEpsilon,r=e-1+this.depthRange;this.gl.depthRange(r,e)},m.prototype.translatePosMatrix=function(t,e,r,n){if(!r[0]&&!r[1])return t;if("viewport"===n){var a=Math.sin(-this.transform.angle),o=Math.cos(-this.transform.angle);r=[r[0]*o-r[1]*a,r[0]*a+r[1]*o]}var s=[l(e,r[0],this.transform.zoom),l(e,r[1],this.transform.zoom),0],c=new Float32Array(16);return i.translate(c,t,s),c},m.prototype.saveTexture=function(t){var e=this.reusableTextures[t.size];e?e.push(t):this.reusableTextures[t.size]=[t]},m.prototype.getTexture=function(t){var e=this.reusableTextures[t];return e&&e.length>0?e.pop():null},m.prototype.lineWidth=function(t){this.gl.lineWidth(c.clamp(t,this.lineWidthRange[0],this.lineWidthRange[1]))},m.prototype.showOverdrawInspector=function(t){if(t||this._showOverdrawInspector){this._showOverdrawInspector=t;var e=this.gl;if(t){e.blendFunc(e.CONSTANT_COLOR,e.ONE);e.blendColor(1/8,1/8,1/8,0),e.clearColor(0,0,0,1),e.clear(e.COLOR_BUFFER_BIT)}else e.blendFunc(e.ONE,e.ONE_MINUS_SRC_ALPHA)}}},{"../data/bucket":301,"../data/buffer":306,"../source/pixels_to_tile_units":335,"../source/source_cache":339,"../util/browser":398,"../util/struct_array":412,"../util/util":414,"./create_uniform_pragmas":316,"./draw_background":317,"./draw_circle":318,"./draw_debug":320,"./draw_fill":321,"./draw_line":322,"./draw_raster":323,"./draw_symbol":324,"./frame_history":325,"./painter/use_program":328,"./vertex_array_object":329,"gl-matrix":198}],328:[function(t,e,r){"use strict";var n=t("assert"),i=t("../../util/util"),a=t("mapbox-gl-shaders"),o=a.util;function s(t,e){return t.replace(/#pragma mapbox: ([\w]+) ([\w]+) ([\w]+) ([\w]+)/g,function(t,r,n,i,a){return e[r][a].replace(/{type}/g,i).replace(/{precision}/g,n)})}e.exports._createProgram=function(t,e,r,l){for(var c=this.gl,u=c.createProgram(),f=a[t],h="#define MAPBOX_GL_JS;\n",d=0;d<e.length;d++)h+="#define "+e[d]+";\n";var p=c.createShader(c.FRAGMENT_SHADER);c.shaderSource(p,s(h+f.fragmentSource,l)),c.compileShader(p),n(c.getShaderParameter(p,c.COMPILE_STATUS),c.getShaderInfoLog(p)),c.attachShader(u,p);var m=c.createShader(c.VERTEX_SHADER);c.shaderSource(m,s(h+o+f.vertexSource,r)),c.compileShader(m),n(c.getShaderParameter(m,c.COMPILE_STATUS),c.getShaderInfoLog(m)),c.attachShader(u,m),c.linkProgram(u),n(c.getProgramParameter(u,c.LINK_STATUS),c.getProgramInfoLog(u));for(var v={},g=c.getProgramParameter(u,c.ACTIVE_ATTRIBUTES),y=0;y<g;y++){var b=c.getActiveAttrib(u,y);v[b.name]=c.getAttribLocation(u,b.name)}for(var x={},_=c.getProgramParameter(u,c.ACTIVE_UNIFORMS),w=0;w<_;w++){var M=c.getActiveUniform(u,w);x[M.name]=c.getUniformLocation(u,M.name)}return i.extend({program:u,definition:f,attributes:v,numAttributes:g},v,x)},e.exports._createProgramCached=function(t,e,r,n){this.cache=this.cache||{};var i=JSON.stringify({name:t,defines:e,vertexPragmas:r,fragmentPragmas:n});return this.cache[i]||(this.cache[i]=this._createProgram(t,e,r,n)),this.cache[i]},e.exports.useProgram=function(t,e,r,n){var i=this.gl;e=e||[],this._showOverdrawInspector&&(e=e.concat("OVERDRAW_INSPECTOR"));var a=this._createProgramCached(t,e,r,n);return this.currentProgram!==a&&(i.useProgram(a.program),this.currentProgram=a),a}},{"../../util/util":414,assert:51,"mapbox-gl-shaders":275}],329:[function(t,e,r){"use strict";var n=t("assert");function i(){this.boundProgram=null,this.boundVertexBuffer=null,this.boundVertexBuffer2=null,this.boundElementBuffer=null,this.vao=null}e.exports=i,i.prototype.bind=function(t,e,r,n,i){void 0===t.extVertexArrayObject&&(t.extVertexArrayObject=t.getExtension("OES_vertex_array_object"));var a=!this.vao||this.boundProgram!==e||this.boundVertexBuffer!==r||this.boundVertexBuffer2!==i||this.boundElementBuffer!==n;!t.extVertexArrayObject||a?this.freshBind(t,e,r,n,i):t.extVertexArrayObject.bindVertexArrayOES(this.vao)},i.prototype.freshBind=function(t,e,r,i,a){var o,s=e.numAttributes;if(t.extVertexArrayObject)this.vao&&this.destroy(t),this.vao=t.extVertexArrayObject.createVertexArrayOES(),t.extVertexArrayObject.bindVertexArrayOES(this.vao),o=0,this.boundProgram=e,this.boundVertexBuffer=r,this.boundVertexBuffer2=a,this.boundElementBuffer=i;else{o=t.currentNumAttributes||0;for(var l=s;l<o;l++)n(0!==l),t.disableVertexAttribArray(l)}for(var c=o;c<s;c++)t.enableVertexAttribArray(c);r.bind(t),r.setVertexAttribPointers(t,e),a&&(a.bind(t),a.setVertexAttribPointers(t,e)),i&&i.bind(t),t.currentNumAttributes=s},i.prototype.unbind=function(t){var e=t.extVertexArrayObject;e&&e.bindVertexArrayOES(null)},i.prototype.destroy=function(t){var e=t.extVertexArrayObject;e&&this.vao&&(e.deleteVertexArrayOES(this.vao),this.vao=null)}},{assert:51}],330:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("resolve-url"),o=t("../data/bucket").EXTENT;function s(t,e,r){e=e||{},this.id=t,this.dispatcher=r,this._data=e.data,void 0!==e.maxzoom&&(this.maxzoom=e.maxzoom),e.type&&(this.type=e.type);var n=o/this.tileSize;this.workerOptions=i.extend({source:this.id,cluster:e.cluster||!1,geojsonVtOptions:{buffer:(void 0!==e.buffer?e.buffer:128)*n,tolerance:(void 0!==e.tolerance?e.tolerance:.375)*n,extent:o,maxZoom:this.maxzoom},superclusterOptions:{maxZoom:Math.min(e.clusterMaxZoom,this.maxzoom-1)||this.maxzoom-1,extent:o,radius:(e.clusterRadius||50)*n,log:!1}},e.workerOptions),this._updateWorkerData(function(t){t?this.fire("error",{error:t}):this.fire("load")}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{type:"geojson",minzoom:0,maxzoom:18,tileSize:512,isTileClipped:!0,reparseOverscaled:!0,onAdd:function(t){this.map=t},setData:function(t){return this._data=t,this._updateWorkerData(function(t){if(t)return this.fire("error",{error:t});this.fire("change")}.bind(this)),this},_updateWorkerData:function(t){var e=i.extend({},this.workerOptions),r=this._data;"string"==typeof r?e.url="undefined"!=typeof window?a(window.location.href,r):r:e.data=JSON.stringify(r),this.workerID=this.dispatcher.send(this.type+".loadData",e,function(e){this._loaded=!0,t(e)}.bind(this))},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={type:this.type,uid:t.uid,coord:t.coord,zoom:t.coord.z,maxZoom:this.maxzoom,tileSize:this.tileSize,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};t.workerID=this.dispatcher.send("load tile",n,function(r,n){if(t.unloadVectorData(this.map.painter),!t.aborted)return r?e(r):(t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null))}.bind(this),this.workerID)},abortTile:function(t){t.aborted=!0},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},function(){},t.workerID)},serialize:function(){return{type:this.type,data:this._data}}})},{"../data/bucket":301,"../util/evented":406,"../util/util":414,"resolve-url":488}],331:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("geojson-rewind"),o=t("./geojson_wrapper"),s=t("vt-pbf"),l=t("supercluster"),c=t("geojson-vt"),u=t("./vector_tile_worker_source");function f(t,e,r){r&&(this.loadGeoJSON=r),u.call(this,t,e)}e.exports=f,f.prototype=n.inherit(u,{_geoJSONIndexes:{},loadVectorData:function(t,e){var r=t.source,n=t.coord;if(!this._geoJSONIndexes[r])return e(null,null);var i=this._geoJSONIndexes[r].getTile(Math.min(n.z,t.maxZoom),n.x,n.y);if(!i)return e(null,null);var a=new o(i.features);a.name="_geojsonTileLayer";var l=s({layers:{_geojsonTileLayer:a}});0===l.byteOffset&&l.byteLength===l.buffer.byteLength||(l=new Uint8Array(l)),e(null,{tile:a,rawTileData:l.buffer})},loadData:function(t,e){var r=function(r,n){return r?e(r):"object"!=typeof n?e(new Error("Input data is not a valid GeoJSON object.")):(a(n,!0),void this._indexData(n,t,function(r,n){if(r)return e(r);this._geoJSONIndexes[t.source]=n,e(null)}.bind(this)))}.bind(this);this.loadGeoJSON(t,r)},loadGeoJSON:function(t,e){if(t.url)i.getJSON(t.url,e);else{if("string"!=typeof t.data)return e(new Error("Input data is not a valid GeoJSON object."));try{return e(null,JSON.parse(t.data))}catch(t){return e(new Error("Input data is not a valid GeoJSON object."))}}},_indexData:function(t,e,r){try{e.cluster?r(null,l(e.superclusterOptions).load(t.features)):r(null,c(t,e.geojsonVtOptions))}catch(t){return r(t)}}})},{"../util/ajax":397,"../util/util":414,"./geojson_wrapper":332,"./vector_tile_worker_source":343,"geojson-rewind":147,"geojson-vt":151,supercluster:518,"vt-pbf":550}],332:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("vector-tile").VectorTileFeature,a=t("../data/bucket").EXTENT;function o(t){this.features=t,this.length=t.length,this.extent=a}function s(t){if(this.type=t.type,1===t.type){this.rawGeometry=[];for(var e=0;e<t.geometry.length;e++)this.rawGeometry.push([t.geometry[e]])}else this.rawGeometry=t.geometry;this.properties=t.tags,this.extent=a}e.exports=o,o.prototype.feature=function(t){return new s(this.features[t])},s.prototype.loadGeometry=function(){var t=this.rawGeometry;this.geometry=[];for(var e=0;e<t.length;e++){for(var r=t[e],i=[],a=0;a<r.length;a++)i.push(new n(r[a][0],r[a][1]));this.geometry.push(i)}return this.geometry},s.prototype.bbox=function(){this.geometry||this.loadGeometry();for(var t=this.geometry,e=1/0,r=-1/0,n=1/0,i=-1/0,a=0;a<t.length;a++)for(var o=t[a],s=0;s<o.length;s++){var l=o[s];e=Math.min(e,l.x),r=Math.max(r,l.x),n=Math.min(n,l.y),i=Math.max(i,l.y)}return[e,n,r,i]},s.prototype.toGeoJSON=i.prototype.toGeoJSON},{"../data/bucket":301,"point-geometry":458,"vector-tile":544}],333:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e,r){this.id=t,this.dispatcher=r,this.url=e.url,this.coordinates=e.coordinates,l.getImage(e.url,function(t,r){if(t)return this.fire("error",{error:t});this.image=r,this.image.addEventListener("load",function(){this.map._rerender()}.bind(this)),this._loaded=!0,this.fire("load"),this.map&&this.setCoordinates(e.coordinates)}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,onAdd:function(t){this.map=t,this.image&&this.setCoordinates(this.coordinates)},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(this._loaded&&this.image&&this.image.complete&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.image)):(this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.image))}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"image",urls:this.url,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],334:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSourceURL;e.exports=function(t,e){var r=function(t,r){if(t)return e(t);var i=n.pick(r,["tiles","minzoom","maxzoom","attribution"]);r.vector_layers&&(i.vectorLayers=r.vector_layers,i.vectorLayerIds=i.vectorLayers.map(function(t){return t.id})),e(null,i)};t.url?i.getJSON(o(t.url),r):a.frame(r.bind(null,null,t))}},{"../util/ajax":397,"../util/browser":398,"../util/mapbox":411,"../util/util":414}],335:[function(t,e,r){"use strict";var n=t("../data/bucket");e.exports=function(t,e,r){return e*(n.EXTENT/(t.tileSize*Math.pow(2,r-t.coord.z)))}},{"../data/bucket":301}],336:[function(t,e,r){"use strict";var n=t("./tile_coord");function i(t,e){var r=t.coord,n=e.coord;return r.z-n.z||r.y-n.y||r.w-n.w||r.x-n.x}r.rendered=function(t,e,r,n,a,o){var s=t.tilesIn(r);s.sort(i);for(var l=[],c=0;c<s.length;c++){var u=s[c];u.tile.featureIndex&&l.push(u.tile.featureIndex.query({queryGeometry:u.queryGeometry,scale:u.scale,tileSize:u.tile.tileSize,bearing:o,params:n},e))}return function(t){for(var e=t[0]||{},r=1;r<t.length;r++){var n=t[r];for(var i in n){var a=n[i],o=e[i];if(void 0===o)o=e[i]=a;else for(var s=0;s<a.length;s++)o.push(a[s])}}return e}(l)},r.source=function(t,e){for(var r=t.getRenderableIds().map(function(e){return t.getTileByID(e)}),i=[],a={},o=0;o<r.length;o++){var s=r[o],l=new n(Math.min(s.sourceMaxZoom,s.coord.z),s.coord.x,s.coord.y,0).id;a[l]||(a[l]=!0,s.querySourceFeatures(i,e))}return i}},{"./tile_coord":341}],337:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/evented"),o=t("./load_tilejson"),s=t("../util/mapbox").normalizeTileURL;function l(t,e,r){this.id=t,this.dispatcher=r,n.extend(this,n.pick(e,["url","scheme","tileSize"])),o(e,function(t,e){if(t)return this.fire("error",t);n.extend(this,e),this.fire("load")}.bind(this))}e.exports=l,l.prototype=n.inherit(a,{minzoom:0,maxzoom:22,roundZoom:!0,scheme:"xyz",tileSize:512,_loaded:!1,onAdd:function(t){this.map=t},serialize:function(){return{type:"raster",url:this.url,tileSize:this.tileSize}},loadTile:function(t,e){var r=s(t.coord.url(this.tiles,null,this.scheme),this.url,this.tileSize);t.request=i.getImage(r,function(r,n){if(delete t.request,t.aborted)return;if(r)return e(r);var i=this.map.painter.gl;t.texture=this.map.painter.getTexture(n.width),t.texture?(i.bindTexture(i.TEXTURE_2D,t.texture),i.texSubImage2D(i.TEXTURE_2D,0,0,0,i.RGBA,i.UNSIGNED_BYTE,n)):(t.texture=i.createTexture(),i.bindTexture(i.TEXTURE_2D,t.texture),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MIN_FILTER,i.LINEAR_MIPMAP_NEAREST),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MAG_FILTER,i.LINEAR),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_S,i.CLAMP_TO_EDGE),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_T,i.CLAMP_TO_EDGE),i.pixelStorei(i.UNPACK_PREMULTIPLY_ALPHA_WEBGL,!0),i.texImage2D(i.TEXTURE_2D,0,i.RGBA,i.RGBA,i.UNSIGNED_BYTE,n),t.texture.size=n.width);i.generateMipmap(i.TEXTURE_2D),this.map.animationLoop.set(this.map.style.rasterFadeDuration),t.state="loaded",e(null)}.bind(this))},abortTile:function(t){t.request&&(t.request.abort(),delete t.request)},unloadTile:function(t){t.texture&&this.map.painter.saveTexture(t.texture)}})},{"../util/ajax":397,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],338:[function(t,e,r){"use strict";var n=t("../util/util"),i={vector:t("../source/vector_tile_source"),raster:t("../source/raster_tile_source"),geojson:t("../source/geojson_source"),video:t("../source/video_source"),image:t("../source/image_source")};r.create=function(t,e,r){if((e=new i[e.type](t,e,r)).id!==t)throw new Error("Expected Source id to be "+t+" instead of "+e.id);return n.bindAll(["load","abort","unload","serialize","prepare"],e),e},r.getType=function(t){return i[t]},r.setType=function(t,e){i[t]=e}},{"../source/geojson_source":330,"../source/image_source":333,"../source/raster_tile_source":337,"../source/vector_tile_source":342,"../source/video_source":344,"../util/util":414}],339:[function(t,e,r){"use strict";var n=t("./source"),i=t("./tile"),a=t("../util/evented"),o=t("./tile_coord"),s=t("../util/lru_cache"),l=t("../geo/coordinate"),c=t("../util/util"),u=t("../data/bucket").EXTENT;function f(t,e,r){this.id=t,this.dispatcher=r;var i=this._source=n.create(t,e,r).on("load",function(){this.map&&this._source.onAdd&&this._source.onAdd(this.map),this._sourceLoaded=!0,this.tileSize=i.tileSize,this.minzoom=i.minzoom,this.maxzoom=i.maxzoom,this.roundZoom=i.roundZoom,this.reparseOverscaled=i.reparseOverscaled,this.isTileClipped=i.isTileClipped,this.attribution=i.attribution,this.vectorLayerIds=i.vectorLayerIds,this.fire("load")}.bind(this)).on("error",function(t){this._sourceErrored=!0,this.fire("error",t)}.bind(this)).on("change",function(){this.reload(),this.transform&&this.update(this.transform,this.map&&this.map.style.rasterFadeDuration),this.fire("change")}.bind(this));this._tiles={},this._cache=new s(0,this.unloadTile.bind(this)),this._isIdRenderable=this._isIdRenderable.bind(this)}function h(t,e,r){var n=r.zoomTo(Math.min(t.z,e));return{x:(n.column-(t.x+t.w*Math.pow(2,t.z)))*u,y:(n.row-t.y)*u}}function d(t,e){return t%32-e%32}e.exports=f,f.maxOverzooming=10,f.maxUnderzooming=3,f.prototype=c.inherit(a,{onAdd:function(t){this.map=t,this._source&&this._source.onAdd&&this._source.onAdd(t)},loaded:function(){if(this._sourceErrored)return!0;if(!this._sourceLoaded)return!1;for(var t in this._tiles){var e=this._tiles[t];if("loaded"!==e.state&&"errored"!==e.state)return!1}return!0},getSource:function(){return this._source},loadTile:function(t,e){return this._source.loadTile(t,e)},unloadTile:function(t){if(this._source.unloadTile)return this._source.unloadTile(t)},abortTile:function(t){if(this._source.abortTile)return this._source.abortTile(t)},serialize:function(){return this._source.serialize()},prepare:function(){if(this._sourceLoaded&&this._source.prepare)return this._source.prepare()},getIds:function(){return Object.keys(this._tiles).map(Number).sort(d)},getRenderableIds:function(){return this.getIds().filter(this._isIdRenderable)},_isIdRenderable:function(t){return this._tiles[t].isRenderable()&&!this._coveredTiles[t]},reload:function(){for(var t in this._cache.reset(),this._tiles){var e=this._tiles[t];"loading"!==e.state&&(e.state="reloading"),this.loadTile(this._tiles[t],this._tileLoaded.bind(this,this._tiles[t]))}},_tileLoaded:function(t,e){if(e)return t.state="errored",this.fire("tile.error",{tile:t,error:e}),void this._source.fire("tile.error",{tile:t,error:e});t.source=this,t.timeAdded=(new Date).getTime(),this.fire("tile.load",{tile:t}),this._source.fire("tile.load",{tile:t})},getTile:function(t){return this.getTileByID(t.id)},getTileByID:function(t){return this._tiles[t]},getZoom:function(t){return t.zoom+t.scaleZoom(t.tileSize/this.tileSize)},findLoadedChildren:function(t,e,r){var n=!1;for(var i in this._tiles){var a=this._tiles[i];if(!(r[i]||!a.isRenderable()||a.coord.z<=t.z||a.coord.z>e)){var o=Math.pow(2,Math.min(a.coord.z,this.maxzoom)-Math.min(t.z,this.maxzoom));if(Math.floor(a.coord.x/o)===t.x&&Math.floor(a.coord.y/o)===t.y)for(r[i]=!0,n=!0;a&&a.coord.z-1>t.z;){var s=a.coord.parent(this.maxzoom).id;(a=this._tiles[s])&&a.isRenderable()&&(delete r[i],r[s]=!0)}}}return n},findLoadedParent:function(t,e,r){for(var n=t.z-1;n>=e;n--){t=t.parent(this.maxzoom);var i=this._tiles[t.id];if(i&&i.isRenderable())return r[t.id]=!0,i;if(this._cache.has(t.id))return this.addTile(t),r[t.id]=!0,this._tiles[t.id]}},updateCacheSize:function(t){var e=(Math.ceil(t.width/t.tileSize)+1)*(Math.ceil(t.height/t.tileSize)+1);this._cache.setMaxSize(Math.floor(5*e))},update:function(t,e){if(this._sourceLoaded){var r,n,i;this.updateCacheSize(t);var a=(this.roundZoom?Math.round:Math.floor)(this.getZoom(t)),s=Math.max(a-f.maxOverzooming,this.minzoom),l=Math.max(a+f.maxUnderzooming,this.minzoom),u={},h=(new Date).getTime();this._coveredTiles={};var d=this.used?t.coveringTiles(this._source):[];for(r=0;r<d.length;r++)n=d[r],i=this.addTile(n),u[n.id]=!0,i.isRenderable()||this.findLoadedChildren(n,l,u)||this.findLoadedParent(n,s,u);for(var p,m={},v=Object.keys(u),g=0;g<v.length;g++){var y=v[g];n=o.fromID(y),(i=this._tiles[y])&&i.timeAdded>h-(e||0)&&(this.findLoadedChildren(n,l,u)&&(u[y]=!0),this.findLoadedParent(n,s,m))}for(p in m)u[p]||(this._coveredTiles[p]=!0);for(p in m)u[p]=!0;var b=c.keysDifference(this._tiles,u);for(r=0;r<b.length;r++)this.removeTile(+b[r]);this.transform=t}},addTile:function(t){var e=this._tiles[t.id];if(e)return e;var r=t.wrapped();if((e=this._tiles[r.id])||(e=this._cache.get(r.id))&&this._redoPlacement&&this._redoPlacement(e),!e){var n=t.z,a=n>this.maxzoom?Math.pow(2,n-this.maxzoom):1;e=new i(r,this.tileSize*a,this.maxzoom),this.loadTile(e,this._tileLoaded.bind(this,e))}return e.uses++,this._tiles[t.id]=e,this.fire("tile.add",{tile:e}),this._source.fire("tile.add",{tile:e}),e},removeTile:function(t){var e=this._tiles[t];e&&(e.uses--,delete this._tiles[t],this.fire("tile.remove",{tile:e}),this._source.fire("tile.remove",{tile:e}),e.uses>0||(e.isRenderable()?this._cache.add(e.coord.wrapped().id,e):(e.aborted=!0,this.abortTile(e),this.unloadTile(e))))},clearTiles:function(){for(var t in this._tiles)this.removeTile(t);this._cache.reset()},tilesIn:function(t){for(var e={},r=this.getIds(),n=1/0,i=1/0,a=-1/0,s=-1/0,c=t[0].zoom,f=0;f<t.length;f++){var d=t[f];n=Math.min(n,d.column),i=Math.min(i,d.row),a=Math.max(a,d.column),s=Math.max(s,d.row)}for(var p=0;p<r.length;p++){var m=this._tiles[r[p]],v=o.fromID(r[p]),g=[h(v,m.sourceMaxZoom,new l(n,i,c)),h(v,m.sourceMaxZoom,new l(a,s,c))];if(g[0].x<u&&g[0].y<u&&g[1].x>=0&&g[1].y>=0){for(var y=[],b=0;b<t.length;b++)y.push(h(v,m.sourceMaxZoom,t[b]));var x=e[m.coord.id];void 0===x&&(x=e[m.coord.id]={tile:m,coord:v,queryGeometry:[],scale:Math.pow(2,this.transform.zoom-m.coord.z)}),x.queryGeometry.push(y)}}var _=[];for(var w in e)_.push(e[w]);return _},redoPlacement:function(){for(var t=this.getIds(),e=0;e<t.length;e++){this.getTileByID(t[e]).redoPlacement(this)}},getVisibleCoordinates:function(){return this.getRenderableIds().map(o.fromID)}})},{"../data/bucket":301,"../geo/coordinate":310,"../util/evented":406,"../util/lru_cache":410,"../util/util":414,"./source":338,"./tile":340,"./tile_coord":341}],340:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../data/bucket"),a=t("../data/feature_index"),o=t("vector-tile"),s=t("pbf"),l=t("../util/vectortile_to_geojson"),c=t("feature-filter"),u=t("../symbol/collision_tile"),f=t("../symbol/collision_box"),h=t("../symbol/symbol_instances"),d=t("../symbol/symbol_quads");function p(t,e,r){this.coord=t,this.uid=n.uniqueId(),this.uses=0,this.tileSize=e,this.sourceMaxZoom=r,this.buckets={},this.state="loading"}function m(t,e){if(e){for(var r={},a=0;a<t.length;a++){var o=e.getLayer(t[a].layerId);if(o){var s=i.create(n.extend({layer:o,childLayers:t[a].childLayerIds.map(e.getLayer.bind(e)).filter(function(t){return t})},t[a]));r[s.id]=s}}return r}}e.exports=p,p.prototype={loadVectorData:function(t,e){this.state="loaded",t&&(this.collisionBoxArray=new f(t.collisionBoxArray),this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.symbolInstancesArray=new h(t.symbolInstancesArray),this.symbolQuadsArray=new d(t.symbolQuadsArray),this.featureIndex=new a(t.featureIndex,t.rawTileData,this.collisionTile),this.rawTileData=t.rawTileData,this.buckets=m(t.buckets,e))},reloadSymbolData:function(t,e,r){if("unloaded"!==this.state){for(var i in this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.featureIndex.setCollisionTile(this.collisionTile),this.buckets){var a=this.buckets[i];"symbol"===a.type&&(a.destroy(e.gl),delete this.buckets[i])}n.extend(this.buckets,m(t.buckets,r))}},unloadVectorData:function(t){for(var e in this.buckets){this.buckets[e].destroy(t.gl)}this.collisionBoxArray=null,this.symbolQuadsArray=null,this.symbolInstancesArray=null,this.collisionTile=null,this.featureIndex=null,this.rawTileData=null,this.buckets=null,this.state="unloaded"},redoPlacement:function(t){"loaded"===this.state&&"reloading"!==this.state?(this.state="reloading",t.dispatcher.send("redo placement",{uid:this.uid,source:t.id,angle:t.map.transform.angle,pitch:t.map.transform.pitch,showCollisionBoxes:t.map.showCollisionBoxes},function(e,r){this.reloadSymbolData(r,t.map.painter,t.map.style),t.fire("tile.load",{tile:this}),this.state="loaded",this.redoWhenDone&&(this.redoPlacement(t),this.redoWhenDone=!1)}.bind(this),this.workerID)):this.redoWhenDone=!0},getBucket:function(t){return this.buckets&&this.buckets[t.ref||t.id]},querySourceFeatures:function(t,e){if(this.rawTileData){this.vtLayers||(this.vtLayers=new o.VectorTile(new s(new Uint8Array(this.rawTileData))).layers);var r=this.vtLayers._geojsonTileLayer||this.vtLayers[e.sourceLayer];if(r)for(var n=c(e.filter),i={z:this.coord.z,x:this.coord.x,y:this.coord.y},a=0;a<r.length;a++){var u=r.feature(a);if(n(u)){var f=new l(u,this.coord.z,this.coord.x,this.coord.y);f.tile=i,t.push(f)}}}},isRenderable:function(){return"loaded"===this.state||"reloading"===this.state}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/util":414,"../util/vectortile_to_geojson":415,"feature-filter":141,pbf:451,"vector-tile":544}],341:[function(t,e,r){"use strict";var n=t("assert"),i=t("whoots-js"),a=t("../geo/coordinate");function o(t,e,r,i){n(!isNaN(t)&&t>=0&&t%1==0),n(!isNaN(e)&&e>=0&&e%1==0),n(!isNaN(r)&&r>=0&&r%1==0),isNaN(i)&&(i=0),this.z=+t,this.x=+e,this.y=+r,this.w=+i,(i*=2)<0&&(i=-1*i-1);var a=1<<this.z;this.id=32*(a*a*i+a*this.y+this.x)+this.z,this.posMatrix=null}function s(t,e){if(t.row>e.row){var r=t;t=e,e=r}return{x0:t.column,y0:t.row,x1:e.column,y1:e.row,dx:e.column-t.column,dy:e.row-t.row}}function l(t,e,r,n,i){var a=Math.max(r,Math.floor(e.y0)),o=Math.min(n,Math.ceil(e.y1));if(t.x0===e.x0&&t.y0===e.y0?t.x0+e.dy/t.dy*t.dx<e.x1:t.x1-e.dy/t.dy*t.dx<e.x0){var s=t;t=e,e=s}for(var l=t.dx/t.dy,c=e.dx/e.dy,u=t.dx>0,f=e.dx<0,h=a;h<o;h++){var d=l*Math.max(0,Math.min(t.dy,h+u-t.y0))+t.x0,p=c*Math.max(0,Math.min(e.dy,h+f-e.y0))+e.x0;i(Math.floor(p),Math.ceil(d),h)}}function c(t,e,r,n,i,a){var o,c=s(t,e),u=s(e,r),f=s(r,t);c.dy>u.dy&&(o=c,c=u,u=o),c.dy>f.dy&&(o=c,c=f,f=o),u.dy>f.dy&&(o=u,u=f,f=o),c.dy&&l(f,c,n,i,a),u.dy&&l(f,u,n,i,a)}e.exports=o,o.prototype.toString=function(){return this.z+"/"+this.x+"/"+this.y},o.prototype.toCoordinate=function(t){var e=Math.min(this.z,t),r=Math.pow(2,e),n=this.y,i=this.x+r*this.w;return new a(i,n,e)},o.fromID=function(t){var e=t%32,r=1<<e,n=(t-e)/32,i=n%r,a=(n-i)/r%r,s=Math.floor(n/(r*r));return s%2!=0&&(s=-1*s-1),new o(e,i,a,s/=2)},o.prototype.url=function(t,e,r){var n=i.getTileBBox(this.x,this.y,this.z),a=function(t,e,r){for(var n,i="",a=t;a>0;a--)i+=(e&(n=1<<a-1)?1:0)+(r&n?2:0);return i}(this.z,this.x,this.y);return t[(this.x+this.y)%t.length].replace("{prefix}",(this.x%16).toString(16)+(this.y%16).toString(16)).replace("{z}",Math.min(this.z,e||this.z)).replace("{x}",this.x).replace("{y}","tms"===r?Math.pow(2,this.z)-this.y-1:this.y).replace("{quadkey}",a).replace("{bbox-epsg-3857}",n)},o.prototype.parent=function(t){return 0===this.z?null:this.z>t?new o(this.z-1,this.x,this.y,this.w):new o(this.z-1,Math.floor(this.x/2),Math.floor(this.y/2),this.w)},o.prototype.wrapped=function(){return new o(this.z,this.x,this.y,0)},o.prototype.children=function(t){if(this.z>=t)return[new o(this.z+1,this.x,this.y,this.w)];var e=this.z+1,r=2*this.x,n=2*this.y;return[new o(e,r,n,this.w),new o(e,r+1,n,this.w),new o(e,r,n+1,this.w),new o(e,r+1,n+1,this.w)]},o.cover=function(t,e,r){var n=1<<t,i={};function a(t,e,a){var s,l;if(a>=0&&a<=n)for(s=t;s<e;s++)l=new o(r,(s%n+n)%n,a,Math.floor(s/n)),i[l.id]=l}return c(e[0],e[1],e[2],0,n,a),c(e[2],e[3],e[0],0,n,a),Object.keys(i).map(function(t){return i[t]})}},{"../geo/coordinate":310,assert:51,"whoots-js":560}],342:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("./load_tilejson"),o=t("../util/mapbox").normalizeTileURL;function s(t,e,r){if(this.id=t,this.dispatcher=r,i.extend(this,i.pick(e,["url","scheme","tileSize"])),this._options=i.extend({type:"vector"},e),512!==this.tileSize)throw new Error("vector tile sources must have a tileSize of 512");a(e,function(t,e){t?this.fire("error",t):(i.extend(this,e),this.fire("load"))}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{minzoom:0,maxzoom:22,scheme:"xyz",tileSize:512,reparseOverscaled:!0,isTileClipped:!0,onAdd:function(t){this.map=t},serialize:function(){return i.extend({},this._options)},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={url:o(t.coord.url(this.tiles,this.maxzoom,this.scheme),this.url),uid:t.uid,coord:t.coord,zoom:t.coord.z,tileSize:this.tileSize*r,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};function i(r,n){if(!t.aborted){if(r)return e(r);t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null),t.reloadCallback&&(this.loadTile(t,t.reloadCallback),t.reloadCallback=null)}}t.workerID?"loading"===t.state?t.reloadCallback=e:(n.rawTileData=t.rawTileData,this.dispatcher.send("reload tile",n,i.bind(this),t.workerID)):t.workerID=this.dispatcher.send("load tile",n,i.bind(this))},abortTile:function(t){this.dispatcher.send("abort tile",{uid:t.uid,source:this.id},null,t.workerID)},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},null,t.workerID)}})},{"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],343:[function(t,e,r){"use strict";var n=t("../util/ajax"),i=t("vector-tile"),a=t("pbf"),o=t("./worker_tile");function s(t,e,r){this.actor=t,this.styleLayers=e,r&&(this.loadVectorData=r),this.loading={},this.loaded={}}e.exports=s,s.prototype={loadTile:function(t,e){var r=t.source,n=t.uid;this.loading[r]||(this.loading[r]={});var i=this.loading[r][n]=new o(t);i.abort=this.loadVectorData(t,function(t,a){if(delete this.loading[r][n],t)return e(t);if(!a)return e(null,null);i.data=a.tile,i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,a.rawTileData,e),this.loaded[r]=this.loaded[r]||{},this.loaded[r][n]=i}.bind(this))},reloadTile:function(t,e){var r=this.loaded[t.source],n=t.uid;if(r&&r[n]){var i=r[n];i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,t.rawTileData,e)}},abortTile:function(t){var e=this.loading[t.source],r=t.uid;e&&e[r]&&e[r].abort&&(e[r].abort(),delete e[r])},removeTile:function(t){var e=this.loaded[t.source],r=t.uid;e&&e[r]&&delete e[r]},loadVectorData:function(t,e){var r=n.getArrayBuffer(t.url,function(t,r){if(t)return e(t);var n=new i.VectorTile(new a(new Uint8Array(r)));e(t,{tile:n,rawTileData:r})}.bind(this));return function(){r.abort()}},redoPlacement:function(t,e){var r=this.loaded[t.source],n=this.loading[t.source],i=t.uid;if(r&&r[i]){var a=r[i].redoPlacement(t.angle,t.pitch,t.showCollisionBoxes);a.result&&e(null,a.result,a.transferables)}else n&&n[i]&&(n[i].angle=t.angle)}}},{"../util/ajax":397,"./worker_tile":346,pbf:451,"vector-tile":544}],344:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e){this.id=t,this.urls=e.urls,this.coordinates=e.coordinates,l.getVideo(e.urls,function(t,r){if(t)return this.fire("error",{error:t});var n;this.video=r,this.video.loop=!0,this.video.addEventListener("playing",function(){n=this.map.style.animationLoop.set(1/0),this.map._rerender()}.bind(this)),this.video.addEventListener("pause",function(){this.map.style.animationLoop.cancel(n)}.bind(this)),this.map&&(this.video.play(),this.setCoordinates(e.coordinates)),this.fire("load")}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,roundZoom:!0,getVideo:function(){return this.video},onAdd:function(t){this.map||(this.map=t,this.video&&(this.video.play(),this.setCoordinates(this.coordinates)))},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(!(this.video.readyState<2)&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.video)):(this._prepared=!0,this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.video)),this._currentTime=this.video.currentTime}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"video",urls:this.urls,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],345:[function(t,e,r){"use strict";var n=t("../util/actor"),i=t("../style/style_layer"),a=t("../util/util"),o=t("./vector_tile_worker_source"),s=t("./geojson_worker_source");function l(t){this.self=t,this.actor=new n(t,this);var e={getLayers:function(){return this.layers}.bind(this),getLayerFamilies:function(){return this.layerFamilies}.bind(this)};this.workerSources={vector:new o(this.actor,e),geojson:new s(this.actor,e)},this.self.registerWorkerSource=function(t,r){if(this.workerSources[t])throw new Error('Worker source with name "'+t+'" already registered.');this.workerSources[t]=new r(this.actor,e)}.bind(this)}function c(t){var e={};for(var r in t){var n=t[r],i=n.ref||n.id,a=t[i];a.layout&&"none"===a.layout.visibility||(e[i]=e[i]||[],r===i?e[i].unshift(n):e[i].push(n))}return e}e.exports=function(t){return new l(t)},a.extend(l.prototype,{"set layers":function(t){this.layers={};for(var e=this,r=[],n=0;n<t.length;n++){var a=t[n];"fill"!==a.type&&"line"!==a.type&&"circle"!==a.type&&"symbol"!==a.type||(a.ref?r.push(n):s(a))}for(var o=0;o<r.length;o++)s(t[r[o]]);function s(t){var r=i.create(t,t.ref&&e.layers[t.ref]);r.updatePaintTransitions({},{transition:!1}),e.layers[r.id]=r}this.layerFamilies=c(this.layers)},"update layers":function(t){var e,r,n=this;for(e in t)(r=t[e]).ref&&a(r);for(e in t)(r=t[e]).ref||a(r);function a(t){var e=n.layers[t.ref];n.layers[t.id]?n.layers[t.id].set(t,e):n.layers[t.id]=i.create(t,e),n.layers[t.id].updatePaintTransitions({},{transition:!1})}this.layerFamilies=c(this.layers)},"load tile":function(t,e){var r=t.type||"vector";this.workerSources[r].loadTile(t,e)},"reload tile":function(t,e){var r=t.type||"vector";this.workerSources[r].reloadTile(t,e)},"abort tile":function(t){var e=t.type||"vector";this.workerSources[e].abortTile(t)},"remove tile":function(t){var e=t.type||"vector";this.workerSources[e].removeTile(t)},"redo placement":function(t,e){var r=t.type||"vector";this.workerSources[r].redoPlacement(t,e)},"load worker source":function(t,e){try{this.self.importScripts(t.url),e()}catch(t){e(t)}}})},{"../style/style_layer":353,"../util/actor":396,"../util/util":414,"./geojson_worker_source":331,"./vector_tile_worker_source":343}],346:[function(t,e,r){"use strict";var n=t("../data/feature_index"),i=t("../symbol/collision_tile"),a=t("../data/bucket"),o=t("../symbol/collision_box"),s=t("../util/dictionary_coder"),l=t("../util/util"),c=t("../symbol/symbol_instances"),u=t("../symbol/symbol_quads");function f(t){this.coord=t.coord,this.uid=t.uid,this.zoom=t.zoom,this.tileSize=t.tileSize,this.source=t.source,this.overscaling=t.overscaling,this.angle=t.angle,this.pitch=t.pitch,this.showCollisionBoxes=t.showCollisionBoxes}function h(t){return!t.isEmpty()}function d(t){return t.serialize()}function p(t){var e=[];for(var r in t)t[r].getTransferables(e);return e}function m(t){return t.id}e.exports=f,f.prototype.parse=function(t,e,r,f,v){this.status="parsing",this.data=t,this.collisionBoxArray=new o,this.symbolInstancesArray=new c,this.symbolQuadsArray=new u;var g,y,b,x,_=new i(this.angle,this.pitch,this.collisionBoxArray),w=new n(this.coord,this.overscaling,_,t.layers),M=new s(t.layers?Object.keys(t.layers).sort():["_geojsonTileLayer"]),k=this,A={},T={},E=0;for(var S in e)(y=e[S][0]).source===this.source&&(y.ref||y.minzoom&&this.zoom<y.minzoom||y.maxzoom&&this.zoom>=y.maxzoom||y.layout&&"none"===y.layout.visibility||t.layers&&!t.layers[y.sourceLayer]||((x=a.create({layer:y,index:E++,childLayers:e[S],zoom:this.zoom,overscaling:this.overscaling,showCollisionBoxes:this.showCollisionBoxes,collisionBoxArray:this.collisionBoxArray,symbolQuadsArray:this.symbolQuadsArray,symbolInstancesArray:this.symbolInstancesArray,sourceLayerIndex:M.encode(y.sourceLayer||"_geojsonTileLayer")})).createFilter(),A[y.id]=x,t.layers&&(T[b=y.sourceLayer]=T[b]||{},T[b][y.id]=x)));if(t.layers)for(b in T)1===y.version&&l.warnOnce('Vector tile source "'+this.source+'" layer "'+b+'" does not use vector tile spec v2 and therefore may have some rendering errors.'),(y=t.layers[b])&&L(y,T[b]);else L(t,A);function L(t,e){for(var r=0;r<t.length;r++){var n=t.feature(r);for(var i in n.index=r,e)e[i].filter(n)&&e[i].features.push(n)}}var C=[],P=this.symbolBuckets=[],z=[];for(var O in w.bucketLayerIDs={},A)0!==(x=A[O]).features.length&&(w.bucketLayerIDs[x.index]=x.childLayers.map(m),C.push(x),"symbol"===x.type?P.push(x):z.push(x));var D={},I={},R=0;if(P.length>0){for(g=P.length-1;g>=0;g--)P[g].updateIcons(D),P[g].updateFont(I);for(var N in I)I[N]=Object.keys(I[N]).map(Number);D=Object.keys(D),r.send("get glyphs",{uid:this.uid,stacks:I},function(t,e){I=e,F(t)}),D.length?r.send("get icons",{icons:D},function(t,e){D=e,F(t)}):F()}for(g=z.length-1;g>=0;g--)j(this,z[g]);if(0===P.length)return B();function F(t){if(t)return v(t);if(2===++R){for(var e=P.length-1;e>=0;e--)j(k,P[e]);B()}}function j(t,e){if(e.populateArrays(_,I,D),"symbol"!==e.type)for(var r=0;r<e.features.length;r++){var n=e.features[r];w.insert(n,n.index,e.sourceLayerIndex,e.index)}e.features=null}function B(){k.status="done",k.redoPlacementAfterDone&&(k.redoPlacement(k.angle,k.pitch,null),k.redoPlacementAfterDone=!1);var t=w.serialize(),e=_.serialize(),r=k.collisionBoxArray.serialize(),n=k.symbolInstancesArray.serialize(),i=k.symbolQuadsArray.serialize(),a=[f].concat(t.transferables).concat(e.transferables),o=C.filter(h);v(null,{buckets:o.map(d),featureIndex:t.data,collisionTile:e.data,collisionBoxArray:r,symbolInstancesArray:n,symbolQuadsArray:i,rawTileData:f},p(o).concat(a))}},f.prototype.redoPlacement=function(t,e,r){if("done"!==this.status)return this.redoPlacementAfterDone=!0,this.angle=t,{};for(var n=new i(t,e,this.collisionBoxArray),a=this.symbolBuckets,o=a.length-1;o>=0;o--)a[o].placeFeatures(n,r);var s=n.serialize(),l=a.filter(h);return{result:{buckets:l.map(d),collisionTile:s.data},transferables:p(l).concat(s.transferables)}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/dictionary_coder":404,"../util/util":414}],347:[function(t,e,r){"use strict";function n(){this.n=0,this.times=[]}e.exports=n,n.prototype.stopped=function(){return this.times=this.times.filter(function(t){return t.time>=(new Date).getTime()}),!this.times.length},n.prototype.set=function(t){return this.times.push({id:this.n,time:t+(new Date).getTime()}),this.n++},n.prototype.cancel=function(t){this.times=this.times.filter(function(e){return e.id!==t})}},{}],348:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSpriteURL;function s(t){this.base=t,this.retina=a.devicePixelRatio>1;var e=this.retina?"@2x":"";i.getJSON(o(t,e,".json"),function(t,e){t?this.fire("error",{error:t}):(this.data=e,this.img&&this.fire("load"))}.bind(this)),i.getImage(o(t,e,".png"),function(t,e){if(t)this.fire("error",{error:t});else{for(var r=e.getData(),n=e.data=new Uint8Array(r.length),i=0;i<r.length;i+=4){var a=r[i+3]/255;n[i+0]=r[i+0]*a,n[i+1]=r[i+1]*a,n[i+2]=r[i+2]*a,n[i+3]=r[i+3]}this.img=e,this.data&&this.fire("load")}}.bind(this))}function l(){}e.exports=s,s.prototype=Object.create(n),s.prototype.toJSON=function(){return this.base},s.prototype.loaded=function(){return!(!this.data||!this.img)},s.prototype.resize=function(){if(a.devicePixelRatio>1!==this.retina){var t=new s(this.base);t.on("load",function(){this.img=t.img,this.data=t.data,this.retina=t.retina}.bind(this))}},l.prototype={x:0,y:0,width:0,height:0,pixelRatio:1,sdf:!1},s.prototype.getSpritePosition=function(t){if(!this.loaded())return new l;var e=this.data&&this.data[t];return e&&this.img?e:new l}},{"../util/ajax":397,"../util/browser":398,"../util/evented":406,"../util/mapbox":411}],349:[function(t,e,r){"use strict";var n=t("csscolorparser").parseCSSColor,i=t("../util/util"),a=t("./style_function"),o={};e.exports=function t(e){if(a.isFunctionDefinition(e))return i.extend({},e,{stops:e.stops.map(function(e){return[e[0],t(e[1])]})});if("string"==typeof e){if(!o[e]){var r=n(e);if(!r)throw new Error("Invalid color "+e);o[e]=[r[0]/255*r[3],r[1]/255*r[3],r[2]/255*r[3],r[3]]}return o[e]}throw new Error("Invalid color "+e)}},{"../util/util":414,"./style_function":352,csscolorparser:114}],350:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("./style_layer"),a=t("./image_sprite"),o=t("../symbol/glyph_source"),s=t("../symbol/sprite_atlas"),l=t("../render/line_atlas"),c=t("../util/util"),u=t("../util/ajax"),f=t("../util/mapbox").normalizeStyleURL,h=t("../util/browser"),d=t("../util/dispatcher"),p=t("./animation_loop"),m=t("./validate_style"),v=t("../source/source"),g=t("../source/query_features"),y=t("../source/source_cache"),b=t("./style_spec"),x=t("./style_function");function _(t,e,r){this.animationLoop=e||new p,this.dispatcher=new d(r||1,this),this.spriteAtlas=new s(1024,1024),this.lineAtlas=new 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t;this._groups=[];for(var e=0;e<this._order.length;++e){var r=this._layers[this._order[e]];t&&r.source===t.source||((t=[]).source=r.source,this._groups.push(t)),t.push(r)}},_updateWorkerLayers:function(t){this.dispatcher.broadcast(t?"update layers":"set layers",this._serializeLayers(t))},_serializeLayers:function(t){t=t||this._order;for(var e=[],r={includeRefProperties:!0},n=0;n<t.length;n++)e.push(this._layers[t[n]].serialize(r));return e},_applyClasses:function(t,e){if(this._loaded){t=t||[],e=e||{transition:!0};var r=this.stylesheet.transition||{},n=this._updates.allPaintProps?this._layers:this._updates.paintProps;for(var i in n){var a=this._layers[i],o=this._updates.paintProps[i];if(this._updates.allPaintProps||o.all)a.updatePaintTransitions(t,e,r,this.animationLoop);else for(var s in o)this._layers[i].updatePaintTransition(s,t,e,r,this.animationLoop)}}},_recalculate:function(t){for(var e in this.sources)this.sources[e].used=!1;for(var r in this._updateZoomHistory(t),this.rasterFadeDuration=300,this._layers){var n=this._layers[r];n.recalculate(t,this.zoomHistory),!n.isHidden(t)&&n.source&&(this.sources[n.source].used=!0)}Math.floor(this.z)!==Math.floor(t)&&this.animationLoop.set(300),this.z=t,this.fire("zoom")},_updateZoomHistory:function(t){var e=this.zoomHistory;void 0===e.lastIntegerZoom&&(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=0,e.lastZoom=t),Math.floor(e.lastZoom)<Math.floor(t)?(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=Date.now()):Math.floor(e.lastZoom)>Math.floor(t)&&(e.lastIntegerZoom=Math.floor(t+1),e.lastIntegerZoomTime=Date.now()),e.lastZoom=t},_checkLoaded:function(){if(!this._loaded)throw new Error("Style is not done loading")},update:function(t,e){if(!this._updates.changed)return this;if(this._updates.allLayers)this._groupLayers(),this._updateWorkerLayers();else{var r=Object.keys(this._updates.layers);r.length&&this._updateWorkerLayers(r)}var n,i=Object.keys(this._updates.sources);for(n=0;n<i.length;n++)this._reloadSource(i[n]);for(n=0;n<this._updates.events.length;n++){var a=this._updates.events[n];this.fire(a[0],a[1])}return this._applyClasses(t,e),this._updates.changed&&this.fire("change"),this._resetUpdates(),this},_resetUpdates:function(){this._updates={events:[],layers:{},sources:{},paintProps:{}}},addSource:function(t,e){if(this._checkLoaded(),void 0!==this.sources[t])throw new Error("There is already a source with this ID");if(!e.type)throw new Error("The type property must be defined, but the only the following properties were given: "+Object.keys(e)+".");return["vector","raster","geojson","video","image"].indexOf(e.type)>=0&&this._handleErrors(m.source,"sources."+t,e)?this:(e=new y(t,e,this.dispatcher),this.sources[t]=e,e.style=this,e.on("load",this._forwardSourceEvent).on("error",this._forwardSourceEvent).on("change",this._forwardSourceEvent).on("tile.add",this._forwardTileEvent).on("tile.load",this._forwardTileEvent).on("tile.error",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.add",{source:e}]),this._updates.changed=!0,this)},removeSource:function(t){if(this._checkLoaded(),void 0===this.sources[t])throw new Error("There is no source with this ID");var e=this.sources[t];return delete this.sources[t],delete this._updates.sources[t],e.off("load",this._forwardSourceEvent).off("error",this._forwardSourceEvent).off("change",this._forwardSourceEvent).off("tile.add",this._forwardTileEvent).off("tile.load",this._forwardTileEvent).off("tile.error",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.remove",{source:e}]),this._updates.changed=!0,this},getSource:function(t){return this.sources[t]&&this.sources[t].getSource()},addLayer:function(t,e){if(this._checkLoaded(),!(t instanceof i)){if(this._handleErrors(m.layer,"layers."+t.id,t,!1,{arrayIndex:-1}))return this;var r=t.ref&&this.getLayer(t.ref);t=i.create(t,r)}return this._validateLayer(t),t.on("error",this._forwardLayerEvent),this._layers[t.id]=t,this._order.splice(e?this._order.indexOf(e):1/0,0,t.id),this._updates.allLayers=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.events.push(["layer.add",{layer:t}]),this.updateClasses(t.id)},removeLayer:function(t){this._checkLoaded();var e=this._layers[t];if(void 0===e)throw new Error("There is no layer with this ID");for(var r in this._layers)this._layers[r].ref===t&&this.removeLayer(r);return e.off("error",this._forwardLayerEvent),delete this._layers[t],delete this._updates.layers[t],delete this._updates.paintProps[t],this._order.splice(this._order.indexOf(t),1),this._updates.allLayers=!0,this._updates.events.push(["layer.remove",{layer:e}]),this._updates.changed=!0,this},getLayer:function(t){return this._layers[t]},getReferentLayer:function(t){var e=this.getLayer(t);return e.ref&&(e=this.getLayer(e.ref)),e},setLayerZoomRange:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return n.minzoom===e&&n.maxzoom===r?this:(null!=e&&(n.minzoom=e),null!=r&&(n.maxzoom=r),this._updateLayer(n))},setFilter:function(t,e){this._checkLoaded();var r=this.getReferentLayer(t);return null!==e&&this._handleErrors(m.filter,"layers."+r.id+".filter",e)?this:c.deepEqual(r.filter,e)?this:(r.filter=c.clone(e),this._updateLayer(r))},getFilter:function(t){return this.getReferentLayer(t).filter},setLayoutProperty:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return c.deepEqual(n.getLayoutProperty(e),r)?this:(n.setLayoutProperty(e,r),this._updateLayer(n))},getLayoutProperty:function(t,e){return this.getReferentLayer(t).getLayoutProperty(e)},setPaintProperty:function(t,e,r,n){this._checkLoaded();var i=this.getLayer(t);if(c.deepEqual(i.getPaintProperty(e,n),r))return this;var a=i.isPaintValueFeatureConstant(e);return i.setPaintProperty(e,r,n),!(r&&x.isFunctionDefinition(r)&&"$zoom"!==r.property&&void 0!==r.property)&&a||(this._updates.layers[t]=!0,i.source&&(this._updates.sources[i.source]=!0)),this.updateClasses(t,e)},getPaintProperty:function(t,e,r){return this.getLayer(t).getPaintProperty(e,r)},updateClasses:function(t,e){if(this._updates.changed=!0,t){var r=this._updates.paintProps;r[t]||(r[t]={}),r[t][e||"all"]=!0}else this._updates.allPaintProps=!0;return this},serialize:function(){return c.filterObject({version:this.stylesheet.version,name:this.stylesheet.name,metadata:this.stylesheet.metadata,center:this.stylesheet.center,zoom:this.stylesheet.zoom,bearing:this.stylesheet.bearing,pitch:this.stylesheet.pitch,sprite:this.stylesheet.sprite,glyphs:this.stylesheet.glyphs,transition:this.stylesheet.transition,sources:c.mapObject(this.sources,function(t){return t.serialize()}),layers:this._order.map(function(t){return this._layers[t].serialize()},this)},function(t){return void 0!==t})},_updateLayer:function(t){return this._updates.layers[t.id]=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.changed=!0,this},_flattenRenderedFeatures:function(t){for(var e=[],r=this._order.length-1;r>=0;r--)for(var n=this._order[r],i=0;i<t.length;i++){var a=t[i][n];if(a)for(var o=0;o<a.length;o++)e.push(a[o])}return e},queryRenderedFeatures:function(t,e,r,n){e&&e.filter&&this._handleErrors(m.filter,"queryRenderedFeatures.filter",e.filter,!0);var i={};if(e&&e.layers)for(var a=0;a<e.layers.length;a++){var o=e.layers[a];i[this._layers[o].source]=!0}var s=[];for(var l in this.sources)if(!e.layers||i[l]){var c=this.sources[l],u=g.rendered(c,this._layers,t,e,r,n);s.push(u)}return this._flattenRenderedFeatures(s)},querySourceFeatures:function(t,e){e&&e.filter&&this._handleErrors(m.filter,"querySourceFeatures.filter",e.filter,!0);var r=this.sources[t];return r?g.source(r,e):[]},addSourceType:function(t,e,r){return v.getType(t)?r(new Error('A source type called "'+t+'" already 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r=this.sprite;r.loaded()?e(null,{sprite:r.data,retina:r.retina}):r.on("load",function(){e(null,{sprite:r.data,retina:r.retina})})},"get icons":function(t,e){var r=this.sprite,n=this.spriteAtlas;r.loaded()?(n.setSprite(r),n.addIcons(t.icons,e)):r.on("load",function(){n.setSprite(r),n.addIcons(t.icons,e)})},"get glyphs":function(t,e){var r=t.stacks,n=Object.keys(r).length,i={};for(var a in r)this.glyphSource.getSimpleGlyphs(a,r[a],t.uid,o);function o(t,r,a){t&&console.error(t),i[a]=r,0===--n&&e(null,i)}}})},{"../render/line_atlas":326,"../source/query_features":336,"../source/source":338,"../source/source_cache":339,"../symbol/glyph_source":371,"../symbol/sprite_atlas":376,"../util/ajax":397,"../util/browser":398,"../util/dispatcher":405,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./animation_loop":347,"./image_sprite":348,"./style_function":352,"./style_layer":353,"./style_spec":360,"./validate_style":362}],351:[function(t,e,r){"use strict";var n=t("./style_function"),i=t("./parse_color"),a=t("../util/util");e.exports=function(t,e){this.value=a.clone(e),this.isFunction=n.isFunctionDefinition(e),this.json=JSON.stringify(this.value);var r="color"===t.type&&this.value?i(this.value):e;this.calculate=n[t.function||"piecewise-constant"](r),this.isFeatureConstant=this.calculate.isFeatureConstant,this.isZoomConstant=this.calculate.isZoomConstant,"piecewise-constant"===t.function&&t.transition&&(this.calculate=(o=this.calculate,function(t,e){var r,n,i,a=t.zoom,s=t.zoomHistory,l=t.duration,c=a%1,u=Math.min((Date.now()-s.lastIntegerZoomTime)/l,1),f=1;return a>s.lastIntegerZoom?(r=c+(1-c)*u,f*=2,n=o({zoom:a-1},e),i=o({zoom:a},e)):(r=1-(1-u)*c,i=o({zoom:a},e),n=o({zoom:a+1},e),f/=2),void 0===n||void 0===i?void 0:{from:n,fromScale:f,to:i,toScale:1,t:r}}));var o;if(!this.isFeatureConstant&&!this.isZoomConstant){this.stopZoomLevels=[];for(var s=[],l=this.value.stops,c=0;c<this.value.stops.length;c++){var u=l[c][0].zoom;this.stopZoomLevels.indexOf(u)<0&&(this.stopZoomLevels.push(u),s.push([u,s.length]))}this.calculateInterpolationT=n.interpolated({stops:s,base:e.base})}}},{"../util/util":414,"./parse_color":349,"./style_function":352}],352:[function(t,e,r){"use strict";var n=t("mapbox-gl-function");r.interpolated=function(t){var e=n.interpolated(t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r["piecewise-constant"]=function(t){var e=n["piecewise-constant"](t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r.isFunctionDefinition=n.isFunctionDefinition},{"mapbox-gl-function":274}],353:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./style_transition"),a=t("./style_declaration"),o=t("./style_spec"),s=t("./validate_style"),l=t("./parse_color"),c=t("../util/evented");e.exports=u;function u(t,e){this.set(t,e)}function 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t[i])this.setPaintProperty(r,t[i][r],s)}}if(this.ref)this._layoutDeclarations=e._layoutDeclarations;else for(n in t.layout)this.setLayoutProperty(n,t.layout[n]);for(r in this._paintSpecifications)this.paint[r]=this.getPaintValue(r);for(n in this._layoutSpecifications)this._updateLayoutValue(n)},setLayoutProperty:function(t,e){if(null==e)delete this._layoutDeclarations[t];else{var r="layers."+this.id+".layout."+t;if(this._handleErrors(s.layoutProperty,r,t,e))return;this._layoutDeclarations[t]=new a(this._layoutSpecifications[t],e)}this._updateLayoutValue(t)},getLayoutProperty:function(t){return this._layoutDeclarations[t]&&this._layoutDeclarations[t].value},getLayoutValue:function(t,e,r){var n=this._layoutSpecifications[t],i=this._layoutDeclarations[t];return i?i.calculate(e,r):n.default},setPaintProperty:function(t,e,r){var i="layers."+this.id+(r?'["paint.'+r+'"].':".paint.")+t;if(n.endsWith(t,"-transition"))if(this._paintTransitionOptions[r||""]||(this._paintTransitionOptions[r||""]={}),null===e||void 0===e)delete this._paintTransitionOptions[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintTransitionOptions[r||""][t]=e}else if(this._paintDeclarations[r||""]||(this._paintDeclarations[r||""]={}),null===e||void 0===e)delete this._paintDeclarations[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintDeclarations[r||""][t]=new a(this._paintSpecifications[t],e)}},getPaintProperty:function(t,e){return e=e||"",n.endsWith(t,"-transition")?this._paintTransitionOptions[e]&&this._paintTransitionOptions[e][t]:this._paintDeclarations[e]&&this._paintDeclarations[e][t]&&this._paintDeclarations[e][t].value},getPaintValue:function(t,e,r){var n=this._paintSpecifications[t],i=this._paintTransitions[t];return i?i.calculate(e,r):"color"===n.type&&n.default?l(n.default):n.default},getPaintValueStopZoomLevels:function(t){var e=this._paintTransitions[t];return e?e.declaration.stopZoomLevels:[]},getPaintInterpolationT:function(t,e){return this._paintTransitions[t].declaration.calculateInterpolationT({zoom:e})},isPaintValueFeatureConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isFeatureConstant},isLayoutValueFeatureConstant:function(t){var e=this._layoutDeclarations[t];return!e||e.isFeatureConstant},isPaintValueZoomConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isZoomConstant},isHidden:function(t){return!!(this.minzoom&&t<this.minzoom)||(!!(this.maxzoom&&t>=this.maxzoom)||("none"===this.layout.visibility||0===this.paint[this.type+"-opacity"]))},updatePaintTransitions:function(t,e,r,i){for(var a,o=n.extend({},this._paintDeclarations[""]),s=0;s<t.length;s++)n.extend(o,this._paintDeclarations[t[s]]);for(a in o)this._applyPaintDeclaration(a,o[a],e,r,i);for(a in this._paintTransitions)a in o||this._applyPaintDeclaration(a,null,e,r,i)},updatePaintTransition:function(t,e,r,n,i){for(var a=this._paintDeclarations[""][t],o=0;o<e.length;o++){var s=this._paintDeclarations[e[o]];s&&s[t]&&(a=s[t])}this._applyPaintDeclaration(t,a,r,n,i)},recalculate:function(t,e){for(var r in this._paintTransitions)this.paint[r]=this.getPaintValue(r,{zoom:t,zoomHistory:e});for(var n in this._layoutFunctions)this.layout[n]=this.getLayoutValue(n,{zoom:t,zoomHistory:e})},serialize:function(t){var e={id:this.id,ref:this.ref,metadata:this.metadata,minzoom:this.minzoom,maxzoom:this.maxzoom};for(var r in this._paintDeclarations){e[""===r?"paint":"paint."+r]=n.mapObject(this._paintDeclarations[r],f)}return(!this.ref||t&&t.includeRefProperties)&&n.extend(e,{type:this.type,source:this.source,"source-layer":this.sourceLayer,filter:this.filter,layout:n.mapObject(this._layoutDeclarations,f)}),n.filterObject(e,function(t,e){return void 0!==t&&!("layout"===e&&!Object.keys(t).length)})},_applyPaintDeclaration:function(t,e,r,o,s){var l=r.transition?this._paintTransitions[t]:void 0,c=this._paintSpecifications[t];if(null!==e&&void 0!==e||(e=new a(c,c.default)),!l||l.declaration.json!==e.json){var u=n.extend({duration:300,delay:0},o,this.getPaintProperty(t+"-transition")),f=this._paintTransitions[t]=new i(c,e,l,u);f.instant()||(f.loopID=s.set(f.endTime-Date.now())),l&&s.cancel(l.loopID)}},_updateLayoutValue:function(t){var e=this._layoutDeclarations[t];e&&e.isFunction?this._layoutFunctions[t]=!0:(delete this._layoutFunctions[t],this.layout[t]=this.getLayoutValue(t))},_handleErrors:function(t,e,r,n){return s.emitErrors(this,t.call(s,{key:e,layerType:this.type,objectKey:r,value:n,styleSpec:o,style:{glyphs:!0,sprite:!0}}))}})},{"../util/evented":406,"../util/util":414,"./parse_color":349,"./style_declaration":351,"./style_layer/background_style_layer":354,"./style_layer/circle_style_layer":355,"./style_layer/fill_style_layer":356,"./style_layer/line_style_layer":357,"./style_layer/raster_style_layer":358,"./style_layer/symbol_style_layer":359,"./style_spec":360,"./style_transition":361,"./validate_style":362}],354:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],355:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],356:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValue.call(this,"fill-color",e,r):i.prototype.getPaintValue.call(this,t,e,r)},getPaintValueStopZoomLevels:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValueStopZoomLevels.call(this,"fill-color"):i.prototype.getPaintValueStopZoomLevels.call(this,arguments)},getPaintInterpolationT:function(t,e){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintInterpolationT.call(this,"fill-color",e):i.prototype.getPaintInterpolationT.call(this,t,e)},isPaintValueFeatureConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueFeatureConstant.call(this,"fill-color"):i.prototype.isPaintValueFeatureConstant.call(this,t)},isPaintValueZoomConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueZoomConstant.call(this,"fill-color"):i.prototype.isPaintValueZoomConstant.call(this,t)}}),e.exports=a},{"../../util/util":414,"../style_layer":353}],357:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){var n=i.prototype.getPaintValue.apply(this,arguments);if(n&&"line-dasharray"===t){var a=Math.floor(e.zoom);this._flooredZoom!==a&&(this._flooredZoom=a,this._flooredLineWidth=this.getPaintValue("line-width",e,r)),n.fromScale*=this._flooredLineWidth,n.toScale*=this._flooredLineWidth}return n}})},{"../../util/util":414,"../style_layer":353}],358:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],359:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{isHidden:function(){if(i.prototype.isHidden.apply(this,arguments))return!0;var t=0===this.paint["text-opacity"]||!this.layout["text-field"],e=0===this.paint["icon-opacity"]||!this.layout["icon-image"];return!(!t||!e)},getLayoutValue:function(t,e,r){return("text-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("text-rotation-alignment"))&&("icon-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("icon-rotation-alignment"))?"text-pitch-alignment"!==t||this.getLayoutProperty("text-pitch-alignment")?i.prototype.getLayoutValue.apply(this,arguments):this.getLayoutValue("text-rotation-alignment"):"map"}})},{"../../util/util":414,"../style_layer":353}],360:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/reference/latest.min")},{"mapbox-gl-style-spec/reference/latest.min":297}],361:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate");function a(t,e,r,a){this.declaration=e,this.startTime=this.endTime=(new Date).getTime(),"piecewise-constant"===t.function&&t.transition?this.interp=o:this.interp=i[t.type],this.oldTransition=r,this.duration=a.duration||0,this.delay=a.delay||0,this.instant()||(this.endTime=this.startTime+this.duration+this.delay,this.ease=n.easeCubicInOut),r&&r.endTime<=this.startTime&&delete r.oldTransition}function o(t,e,r){return void 0===(t&&t.to)||void 0===(e&&e.to)?void 0:{from:t.to,fromScale:t.toScale,to:e.to,toScale:e.toScale,t:r}}e.exports=a,a.prototype.instant=function(){return!this.oldTransition||!this.interp||0===this.duration&&0===this.delay},a.prototype.calculate=function(t,e){var r=this.declaration.calculate(n.extend({},t,{duration:this.duration}),e);if(this.instant())return r;var i=t.time||Date.now();if(i<this.endTime){var a=this.oldTransition.calculate(n.extend({},t,{time:this.startTime}),e),o=this.ease((i-this.startTime-this.delay)/this.duration);r=this.interp(a,r,o)}return r}},{"../util/interpolate":408,"../util/util":414}],362:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/lib/validate_style.min"),e.exports.emitErrors=function(t,e){if(e&&e.length){for(var r=0;r<e.length;r++)t.fire("error",{error:new Error(e[r].message)});return!0}return!1},e.exports.throwErrors=function(t,e){if(e)for(var r=0;r<e.length;r++)throw new Error(e[r].message)}},{"mapbox-gl-style-spec/lib/validate_style.min":296}],363:[function(t,e,r){"use strict";var n=t("point-geometry");function i(t,e,r,n){this.x=t,this.y=e,this.angle=r,void 0!==n&&(this.segment=n)}e.exports=i,i.prototype=Object.create(n.prototype),i.prototype.clone=function(){return new i(this.x,this.y,this.angle,this.segment)}},{"point-geometry":458}],364:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){if(void 0===e.segment)return!0;var a=e,o=e.segment+1,s=0;for(;s>-r/2;){if(--o<0)return!1;s-=t[o].dist(a),a=t[o]}s+=t[o].dist(t[o+1]),o++;var l=[],c=0;for(;s<r/2;){var u=t[o-1],f=t[o],h=t[o+1];if(!h)return!1;var d=u.angleTo(f)-f.angleTo(h);for(d=Math.abs((d+3*Math.PI)%(2*Math.PI)-Math.PI),l.push({distance:s,angleDelta:d}),c+=d;s-l[0].distance>n;)c-=l.shift().angleDelta;if(c>i)return!1;o++,s+=f.dist(h)}return!0}},{}],365:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports=function(t,e,r,i,a){for(var o=[],s=0;s<t.length;s++)for(var l,c=t[s],u=0;u<c.length-1;u++){var f=c[u],h=c[u+1];f.x<e&&h.x<e||(f.x<e?f=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round():h.x<e&&(h=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round()),f.y<r&&h.y<r||(f.y<r?f=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round():h.y<r&&(h=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round()),f.x>=i&&h.x>=i||(f.x>=i?f=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round():h.x>=i&&(h=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round()),f.y>=a&&h.y>=a||(f.y>=a?f=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round():h.y>=a&&(h=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round()),l&&f.equals(l[l.length-1])||(l=[f],o.push(l)),l.push(h)))))}return o}},{"point-geometry":458}],366:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int16",name:"x1"},{type:"Int16",name:"y1"},{type:"Int16",name:"x2"},{type:"Int16",name:"y2"},{type:"Float32",name:"maxScale"},{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"},{type:"Int16",name:"bbox0"},{type:"Int16",name:"bbox1"},{type:"Int16",name:"bbox2"},{type:"Int16",name:"bbox3"},{type:"Float32",name:"placementScale"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],367:[function(t,e,r){"use strict";function n(t,e,r,n,i,a,o,s,l,c,u){var f=o.top*s-l,h=o.bottom*s+l,d=o.left*s-l,p=o.right*s+l;if(this.boxStartIndex=t.length,c){var m=h-f,v=p-d;if(m>0)if(m=Math.max(10*s,m),u){var g=e[r.segment+1].sub(e[r.segment])._unit()._mult(v),y=[r.sub(g),r.add(g)];this._addLineCollisionBoxes(t,y,r,0,v,m,n,i,a)}else this._addLineCollisionBoxes(t,e,r,r.segment,v,m,n,i,a)}else t.emplaceBack(r.x,r.y,d,f,p,h,1/0,n,i,a,0,0,0,0,0);this.boxEndIndex=t.length}e.exports=n,n.prototype._addLineCollisionBoxes=function(t,e,r,n,i,a,o,s,l){var c=a/2,u=Math.floor(i/c),f=-a/2,h=this.boxes,d=r,p=n+1,m=f;do{if(--p<0)return h;m-=e[p].dist(d),d=e[p]}while(m>-i/2);for(var v=e[p].dist(e[p+1]),g=0;g<u;g++){for(var y=-i/2+g*c;m+v<y;){if(m+=v,++p+1>=e.length)return h;v=e[p].dist(e[p+1])}var b=y-m,x=e[p],_=e[p+1].sub(x)._unit()._mult(b)._add(x)._round(),w=i/2/Math.max(Math.abs(y-f)-c/2,0);t.emplaceBack(_.x,_.y,-a/2,-a/2,a/2,a/2,w,o,s,l,0,0,0,0,0)}return h}},{}],368:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../data/bucket").EXTENT,a=t("grid-index");function o(t,e,r){if("object"==typeof t){var n=t;r=e,t=n.angle,e=n.pitch,this.grid=new a(n.grid),this.ignoredGrid=new a(n.ignoredGrid)}else this.grid=new a(i,12,6),this.ignoredGrid=new a(i,12,0);this.angle=t,this.pitch=e;var o=Math.sin(t),s=Math.cos(t);if(this.rotationMatrix=[s,-o,o,s],this.reverseRotationMatrix=[s,o,-o,s],this.yStretch=1/Math.cos(e/180*Math.PI),this.yStretch=Math.pow(this.yStretch,1.3),this.collisionBoxArray=r,0===r.length){r.emplaceBack();r.emplaceBack(0,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(i,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,0,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,i,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0)}this.tempCollisionBox=r.get(0),this.edges=[r.get(1),r.get(2),r.get(3),r.get(4)]}e.exports=o,o.prototype.serialize=function(){var t={angle:this.angle,pitch:this.pitch,grid:this.grid.toArrayBuffer(),ignoredGrid:this.ignoredGrid.toArrayBuffer()};return{data:t,transferables:[t.grid,t.ignoredGrid]}},o.prototype.minScale=.25,o.prototype.maxScale=2,o.prototype.placeCollisionFeature=function(t,e,r){for(var i=this.collisionBoxArray,a=this.minScale,o=this.rotationMatrix,s=this.yStretch,l=t.boxStartIndex;l<t.boxEndIndex;l++){var c=i.get(l),u=c.anchorPoint._matMult(o),f=u.x,h=u.y,d=f+c.x1,p=h+c.y1*s,m=f+c.x2,v=h+c.y2*s;if(c.bbox0=d,c.bbox1=p,c.bbox2=m,c.bbox3=v,!e)for(var g=this.grid.query(d,p,m,v),y=0;y<g.length;y++){var b=i.get(g[y]),x=b.anchorPoint._matMult(o);if((a=this.getPlacementScale(a,u,c,x,b))>=this.maxScale)return a}if(r){var _;if(this.angle){var w=this.reverseRotationMatrix,M=new n(c.x1,c.y1).matMult(w),k=new n(c.x2,c.y1).matMult(w),A=new n(c.x1,c.y2).matMult(w),T=new n(c.x2,c.y2).matMult(w);(_=this.tempCollisionBox).anchorPointX=c.anchorPoint.x,_.anchorPointY=c.anchorPoint.y,_.x1=Math.min(M.x,k.x,A.x,T.x),_.y1=Math.min(M.y,k.x,A.x,T.x),_.x2=Math.max(M.x,k.x,A.x,T.x),_.y2=Math.max(M.y,k.x,A.x,T.x),_.maxScale=c.maxScale}else _=c;for(var E=0;E<this.edges.length;E++){var S=this.edges[E];if((a=this.getPlacementScale(a,c.anchorPoint,_,S.anchorPoint,S))>=this.maxScale)return a}}}return a},o.prototype.queryRenderedSymbols=function(t,e,r,i,a){var o={},s=[],l=this.collisionBoxArray,c=this.rotationMatrix,u=new n(t,e)._matMult(c),f=this.tempCollisionBox;f.anchorX=u.x,f.anchorY=u.y,f.x1=0,f.y1=0,f.x2=r-t,f.y2=i-e,f.maxScale=a,a=f.maxScale;for(var h=[u.x+f.x1/a,u.y+f.y1/a*this.yStretch,u.x+f.x2/a,u.y+f.y2/a*this.yStretch],d=this.grid.query(h[0],h[1],h[2],h[3]),p=this.ignoredGrid.query(h[0],h[1],h[2],h[3]),m=0;m<p.length;m++)d.push(p[m]);for(var v=0;v<d.length;v++){var g=l.get(d[v]),y=g.sourceLayerIndex,b=g.featureIndex;if(void 0===o[y]&&(o[y]={}),!o[y][b]){var x=g.anchorPoint.matMult(c);this.getPlacementScale(this.minScale,u,f,x,g)>=a&&(o[y][b]=!0,s.push(d[v]))}}return s},o.prototype.getPlacementScale=function(t,e,r,n,i){var a=e.x-n.x,o=e.y-n.y,s=(i.x1-r.x2)/a,l=(i.x2-r.x1)/a,c=(i.y1-r.y2)*this.yStretch/o,u=(i.y2-r.y1)*this.yStretch/o;(isNaN(s)||isNaN(l))&&(s=l=1),(isNaN(c)||isNaN(u))&&(c=u=1);var f=Math.min(Math.max(s,l),Math.max(c,u)),h=i.maxScale,d=r.maxScale;return f>h&&(f=h),f>d&&(f=d),f>t&&f>=i.placementScale&&(t=f),t},o.prototype.insertCollisionFeature=function(t,e,r){for(var n=r?this.ignoredGrid:this.grid,i=this.collisionBoxArray,a=t.boxStartIndex;a<t.boxEndIndex;a++){var o=i.get(a);o.placementScale=e,e<this.maxScale&&n.insert(a,o.bbox0,o.bbox1,o.bbox2,o.bbox3)}}},{"../data/bucket":301,"grid-index":254,"point-geometry":458}],369:[function(t,e,r){"use strict";var n=t("../util/interpolate"),i=t("../symbol/anchor"),a=t("./check_max_angle");e.exports=function(t,e,r,o,s,l,c,u,f){var h=o?.6*l*c:0,d=Math.max(o?o.right-o.left:0,s?s.right-s.left:0),p=0===t[0].x||t[0].x===f||0===t[0].y||t[0].y===f;e-d*c<e/4&&(e=d*c+e/4);return function t(e,r,o,s,l,c,u,f,h){var d=c/2;var p=0;for(var m=0;m<e.length-1;m++)p+=e[m].dist(e[m+1]);var v=0,g=r-o;var y=[];for(var b=0;b<e.length-1;b++){for(var x=e[b],_=e[b+1],w=x.dist(_),M=_.angleTo(x);g+o<v+w;){var k=((g+=o)-v)/w,A=n(x.x,_.x,k),T=n(x.y,_.y,k);if(A>=0&&A<h&&T>=0&&T<h&&g-d>=0&&g+d<=p){var E=new i(A,T,M,b)._round();s&&!a(e,E,c,s,l)||y.push(E)}}v+=w}f||y.length||u||(y=t(e,v/2,o,s,l,c,u,!0,h));return y}(t,p?e/2*u%e:(d/2+2*l)*c*u%e,e,h,r,d*c,p,!1,f)}},{"../symbol/anchor":363,"../util/interpolate":408,"./check_max_angle":364}],370:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/util"),a=128;function o(){this.width=a,this.height=a,this.bin=new n(this.width,this.height),this.index={},this.ids={},this.data=new Uint8Array(this.width*this.height)}e.exports=o,o.prototype.getGlyphs=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]=[]),n[e].push(r);return n},o.prototype.getRects=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]={}),n[e][r]=this.index[i];return n},o.prototype.addGlyph=function(t,e,r,n){if(!r)return null;var a=e+"#"+r.id;if(this.index[a])return this.ids[a].indexOf(t)<0&&this.ids[a].push(t),this.index[a];if(!r.bitmap)return null;var o=r.width+2*n,s=r.height+2*n,l=o+2,c=s+2;l+=4-l%4,c+=4-c%4;var u=this.bin.packOne(l,c);if(u||(this.resize(),u=this.bin.packOne(l,c)),!u)return i.warnOnce("glyph bitmap overflow"),null;this.index[a]=u,this.ids[a]=[t];for(var f=this.data,h=r.bitmap,d=0;d<s;d++)for(var p=this.width*(u.y+d+1)+u.x+1,m=o*d,v=0;v<o;v++)f[p+v]=h[m+v];return this.dirty=!0,u},o.prototype.resize=function(){var t=this.width,e=this.height;if(!(t>=2048||e>=2048)){this.texture&&(this.gl&&this.gl.deleteTexture(this.texture),this.texture=null),this.width*=4,this.height*=4,this.bin.resize(this.width,this.height);for(var r=new ArrayBuffer(this.width*this.height),n=0;n<e;n++){var i=new Uint8Array(this.data.buffer,e*n,t);new Uint8Array(r,e*n*4,t).set(i)}this.data=new Uint8Array(r)}},o.prototype.bind=function(t){this.gl=t,this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,this.width,this.height,0,t.ALPHA,t.UNSIGNED_BYTE,null))},o.prototype.updateTexture=function(t){this.bind(t),this.dirty&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.ALPHA,t.UNSIGNED_BYTE,this.data),this.dirty=!1)}},{"../util/util":414,"shelf-pack":501}],371:[function(t,e,r){"use strict";var n=t("../util/mapbox").normalizeGlyphsURL,i=t("../util/ajax").getArrayBuffer,a=t("../util/glyphs"),o=t("../symbol/glyph_atlas"),s=t("pbf");function l(t){this.url=t&&n(t),this.atlases={},this.stacks={},this.loading={}}function c(t,e,r){this.advance=t.advance,this.left=t.left-r-1,this.top=t.top+r+1,this.rect=e}e.exports=l,l.prototype.getSimpleGlyphs=function(t,e,r,n){void 0===this.stacks[t]&&(this.stacks[t]={}),void 0===this.atlases[t]&&(this.atlases[t]=new o);for(var i,a={},s=this.stacks[t],l=this.atlases[t],u={},f=0,h=0;h<e.length;h++){var d=e[h];if(s[i=Math.floor(d/256)]){var p=s[i].glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}else void 0===u[i]&&(u[i]=[],f++),u[i].push(d)}f||n(void 0,a,t);var v=function(e,i,o){if(!e)for(var s=this.stacks[t][i]=o.stacks[0],h=0;h<u[i].length;h++){var d=u[i][h],p=s.glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}--f||n(void 0,a,t)}.bind(this);for(var g in u)this.loadRange(t,g,v)},l.prototype.loadRange=function(t,e,r){if(256*e>65535)return r("glyphs > 65535 not supported");void 0===this.loading[t]&&(this.loading[t]={});var n=this.loading[t];if(n[e])n[e].push(r);else{n[e]=[r];var o=function(t,e,r,n){return n=n||"abc",r.replace("{s}",n[t.length%n.length]).replace("{fontstack}",t).replace("{range}",e)}(t,256*e+"-"+(256*e+255),this.url);i(o,function(t,r){for(var i=!t&&new a(new s(new Uint8Array(r))),o=0;o<n[e].length;o++)n[e][o](t,e,i);delete n[e]})}},l.prototype.getGlyphAtlas=function(t){return this.atlases[t]}},{"../symbol/glyph_atlas":370,"../util/ajax":397,"../util/glyphs":407,"../util/mapbox":411,pbf:451}],372:[function(t,e,r){"use strict";e.exports=function(t,e,r){var n,i={},a={},o=[],s=[],l=[],c=0;function u(n){o.push(t[n]),s.push(r[n]),l.push(e[n]),c++}function f(t,e,r){var n=a[t];return delete a[t],a[e]=n,s[n][0].pop(),s[n][0]=s[n][0].concat(r[0]),n}function h(t,e,r){var n=i[e];return delete i[e],i[t]=n,s[n][0].shift(),s[n][0]=r[0].concat(s[n][0]),n}function d(t,e,r){var n=r?e[0][e[0].length-1]:e[0][0];return t+":"+n.x+":"+n.y}for(n=0;n<t.length;n++){var p=r[n],m=e[n];if(m){var v=d(m,p),g=d(m,p,!0);if(v in a&&g in i&&a[v]!==i[g]){var y=h(v,g,p),b=f(v,g,s[y]);delete i[v],delete a[g],a[d(m,s[b],!0)]=b,s[y]=null}else v in a?f(v,g,p):g in i?h(v,g,p):(u(n),i[v]=c-1,a[g]=c-1)}else u(n)}return{features:o,textFeatures:l,geometries:s}}},{}],373:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports={getIconQuads:function(t,e,r,o,s,l,c,u,f){var h,d,p,m,v=e.image.rect,g=s.layout,y=e.left-1,b=y+v.w/e.image.pixelRatio,x=e.top-1,_=x+v.h/e.image.pixelRatio;if("none"!==g["icon-text-fit"]&&c){var w=b-y,M=_-x,k=g["text-size"]/24,A=c.left*k,T=c.right*k,E=c.top*k,S=c.bottom*k,L=T-A,C=S-E,P=g["icon-text-fit-padding"][0],z=g["icon-text-fit-padding"][1],O=g["icon-text-fit-padding"][2],D=g["icon-text-fit-padding"][3],I="width"===g["icon-text-fit"]?.5*(C-M):0,R="height"===g["icon-text-fit"]?.5*(L-w):0,N="width"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?L:w,F="height"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?C:M;h=new n(A+R-D,E+I-P),d=new n(A+R+z+N,E+I-P),p=new n(A+R+z+N,E+I+O+F),m=new n(A+R-D,E+I+O+F)}else h=new n(y,x),d=new n(b,x),p=new n(b,_),m=new n(y,_);var j=s.getLayoutValue("icon-rotate",u,f)*Math.PI/180;if(l){var B=o[t.segment];if(t.y===B.y&&t.x===B.x&&t.segment+1<o.length){var U=o[t.segment+1];j+=Math.atan2(t.y-U.y,t.x-U.x)+Math.PI}else j+=Math.atan2(t.y-B.y,t.x-B.x)}if(j){var V=Math.sin(j),q=Math.cos(j),H=[q,-V,V,q];h=h.matMult(H),d=d.matMult(H),m=m.matMult(H),p=p.matMult(H)}return[new a(new n(t.x,t.y),h,d,m,p,e.image.rect,0,0,i,1/0)]},getGlyphQuads:function(t,e,r,s,l,c){for(var u=l.layout["text-rotate"]*Math.PI/180,f=l.layout["text-keep-upright"],h=e.positionedGlyphs,d=[],p=0;p<h.length;p++){var m=h[p],v=m.glyph,g=v.rect;if(g){var y,b=(m.x+v.advance/2)*r,x=i;c?(x=o(y=[],t,b,s,t.segment,!0),f&&(x=Math.min(x,o(y,t,b,s,t.segment,!1)))):y=[{anchorPoint:new n(t.x,t.y),offset:0,angle:0,maxScale:1/0,minScale:i}];for(var _=m.x+v.left,w=m.y-v.top,M=_+g.w,k=w+g.h,A=new n(_,w),T=new n(M,w),E=new n(_,k),S=new n(M,k),L=0;L<y.length;L++){var C=y[L],P=A,z=T,O=E,D=S;if(u){var I=Math.sin(u),R=Math.cos(u),N=[R,-I,I,R];P=P.matMult(N),z=z.matMult(N),O=O.matMult(N),D=D.matMult(N)}var F=Math.max(C.minScale,x),j=(t.angle+C.offset+2*Math.PI)%(2*Math.PI),B=(C.angle+C.offset+2*Math.PI)%(2*Math.PI);d.push(new a(C.anchorPoint,P,z,O,D,g,j,B,F,C.maxScale))}}}return d},SymbolQuad:a};var i=.5;function a(t,e,r,n,i,a,o,s,l,c){this.anchorPoint=t,this.tl=e,this.tr=r,this.bl=n,this.br=i,this.tex=a,this.anchorAngle=o,this.glyphAngle=s,this.minScale=l,this.maxScale=c}function o(t,e,r,a,o,s){var l=!s;r<0&&(s=!s),s&&o++;var c=new n(e.x,e.y),u=a[o],f=1/0;r=Math.abs(r);for(var h=i;;){var d=c.dist(u),p=r/d,m=Math.atan2(u.y-c.y,u.x-c.x);if(s||(m+=Math.PI),t.push({anchorPoint:c,offset:l?Math.PI:0,minScale:p,maxScale:f,angle:(m+2*Math.PI)%(2*Math.PI)}),p<=h)break;for(c=u;c.equals(u);)if(!(u=a[o+=s?1:-1]))return p;var v=u.sub(c)._unit();c=c.sub(v._mult(d)),f=p}return h}},{"point-geometry":458}],374:[function(t,e,r){"use strict";var n=t("../util/token");e.exports=function(t,e,r){for(var i=[],a=0,o=t.length;a<o;a++){var s=n(t[a].properties,e["text-field"]);if(s){s=s.toString();var l=e["text-transform"];"uppercase"===l?s=s.toLocaleUpperCase():"lowercase"===l&&(s=s.toLocaleLowerCase());for(var c=0;c<s.length;c++)r[s.charCodeAt(c)]=!0;i[a]=s}else i[a]=null}return i}},{"../util/token":413}],375:[function(t,e,r){"use strict";function n(t,e,r,n){this.codePoint=t,this.x=e,this.y=r,this.glyph=n}e.exports={shapeText:function(t,e,r,s,l,c,u,f,h){for(var d=[],p=new function(t,e,r,n,i,a){this.positionedGlyphs=t,this.text=e,this.top=r,this.bottom=n,this.left=i,this.right=a}(d,t,h[1],h[1],h[0],h[0]),m=0,v=0;v<t.length;v++){var g=t.charCodeAt(v),y=e[g];y&&(d.push(new n(g,m,-17,y)),m+=y.advance+f)}return!!d.length&&(function(t,e,r,n,s,l,c,u){var f=null,h=0,d=0,p=0,m=0,v=t.positionedGlyphs;if(n)for(var g=0;g<v.length;g++){var y=v[g];if(y.x-=h,y.y+=r*p,y.x>n&&null!==f){var b=v[f+1].x;m=Math.max(b,m);for(var x=f+1;x<=g;x++)v[x].y+=r,v[x].x-=b;if(c){var _=f;i[v[f].codePoint]&&_--,o(v,e,d,_,c)}d=f+1,f=null,h+=b,p++}a[y.codePoint]&&(f=g)}var w=v[v.length-1],M=w.x+e[w.codePoint].advance;m=Math.max(m,M);var k=(p+1)*r;o(v,e,d,v.length-1,c),function(t,e,r,n,i,a,o,s){for(var l=(e-r)*i+s[0],c=(-n*(o+1)+.5)*a+s[1],u=0;u<t.length;u++)t[u].x+=l,t[u].y+=c}(v,c,s,l,m,r,p,u),t.top+=-l*k,t.bottom=t.top+k,t.left+=-s*m,t.right=t.left+m}(p,e,s,r,l,c,u,h),p)},shapeIcon:function(t,e){if(!t||!t.rect)return null;var r=e["icon-offset"][0],n=e["icon-offset"][1],i=r-t.width/2,a=i+t.width,o=n-t.height/2,s=o+t.height;return new function(t,e,r,n,i){this.image=t,this.top=e,this.bottom=r,this.left=n,this.right=i}(t,o,s,i,a)}};var i={32:!0,8203:!0},a={32:!0,38:!0,43:!0,45:!0,47:!0,173:!0,183:!0,8203:!0,8208:!0,8211:!0};function o(t,e,r,n,i){for(var a=e[t[n].codePoint].advance,o=(t[n].x+a)*i,s=r;s<=n;s++)t[s].x-=o}},{}],376:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/browser"),a=t("../util/util");function o(t,e){this.width=t,this.height=e,this.bin=new n(t,e),this.images={},this.data=!1,this.texture=0,this.filter=0,this.pixelRatio=1,this.dirty=!0}e.exports=o,o.prototype.allocateImage=function(t,e){var r=(t/=this.pixelRatio)+2+(4-(t+2)%4),n=(e/=this.pixelRatio)+2+(4-(e+2)%4),i=this.bin.packOne(r,n);return i||(a.warnOnce("SpriteAtlas out of space."),null)},o.prototype.getImage=function(t,e){if(this.images[t])return this.images[t];if(!this.sprite)return null;var r=this.sprite.getSpritePosition(t);if(!r.width||!r.height)return null;var n=this.allocateImage(r.width,r.height);if(!n)return null;var i=new function(t,e,r,n,i){this.rect=t,this.width=e,this.height=r,this.sdf=n,this.pixelRatio=i}(n,r.width/r.pixelRatio,r.height/r.pixelRatio,r.sdf,r.pixelRatio/this.pixelRatio);return this.images[t]=i,this.copy(n,r,e),i},o.prototype.getPosition=function(t,e){var r=this.getImage(t,e),n=r&&r.rect;if(!n)return null;var i=r.width*r.pixelRatio,a=r.height*r.pixelRatio;return{size:[r.width,r.height],tl:[(n.x+1)/this.width,(n.y+1)/this.height],br:[(n.x+1+i)/this.width,(n.y+1+a)/this.height]}},o.prototype.allocate=function(){if(!this.data){var t=Math.floor(this.width*this.pixelRatio),e=Math.floor(this.height*this.pixelRatio);this.data=new Uint32Array(t*e);for(var r=0;r<this.data.length;r++)this.data[r]=0}},o.prototype.copy=function(t,e,r){if(this.sprite.img.data){var n=new Uint32Array(this.sprite.img.data.buffer);this.allocate();var i=this.data;!function(t,e,r,n,i,a,o,s,l,c,u){var f,h,d=n*e+r,p=s*a+o;if(u)for(p-=a,h=-1;h<=c;d=((++h+c)%c+n)*e+r,p+=a)for(f=-1;f<=l;f++)i[p+f]=t[d+(f+l)%l];else for(h=0;h<c;h++,d+=e,p+=a)for(f=0;f<l;f++)i[p+f]=t[d+f]}(n,this.sprite.img.width,e.x,e.y,i,this.width*this.pixelRatio,(t.x+1)*this.pixelRatio,(t.y+1)*this.pixelRatio,e.width,e.height,r),this.dirty=!0}},o.prototype.setSprite=function(t){t&&(this.pixelRatio=i.devicePixelRatio>1?2:1,this.canvas&&(this.canvas.width=this.width*this.pixelRatio,this.canvas.height=this.height*this.pixelRatio)),this.sprite=t},o.prototype.addIcons=function(t,e){for(var r=0;r<t.length;r++)this.getImage(t[r]);e(null,this.images)},o.prototype.bind=function(t,e){var r=!1;this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),r=!0);var n=e?t.LINEAR:t.NEAREST;n!==this.filter&&(t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,n),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,n),this.filter=n),this.dirty&&(this.allocate(),r?t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width*this.pixelRatio,this.height*this.pixelRatio,0,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)):t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width*this.pixelRatio,this.height*this.pixelRatio,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)),this.dirty=!1)}},{"../util/browser":398,"../util/util":414,"shelf-pack":501}],377:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Uint16",name:"textBoxStartIndex"},{type:"Uint16",name:"textBoxEndIndex"},{type:"Uint16",name:"iconBoxStartIndex"},{type:"Uint16",name:"iconBoxEndIndex"},{type:"Uint16",name:"glyphQuadStartIndex"},{type:"Uint16",name:"glyphQuadEndIndex"},{type:"Uint16",name:"iconQuadStartIndex"},{type:"Uint16",name:"iconQuadEndIndex"},{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int8",name:"index"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],378:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=t("./quads").SymbolQuad,s=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Float32",name:"tlX"},{type:"Float32",name:"tlY"},{type:"Float32",name:"trX"},{type:"Float32",name:"trY"},{type:"Float32",name:"blX"},{type:"Float32",name:"blY"},{type:"Float32",name:"brX"},{type:"Float32",name:"brY"},{type:"Int16",name:"texH"},{type:"Int16",name:"texW"},{type:"Int16",name:"texX"},{type:"Int16",name:"texY"},{type:"Float32",name:"anchorAngle"},{type:"Float32",name:"glyphAngle"},{type:"Float32",name:"maxScale"},{type:"Float32",name:"minScale"}]});i.extendAll(s.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)},get SymbolQuad(){return new o(this.anchorPoint,new a(this.tlX,this.tlY),new a(this.trX,this.trY),new a(this.blX,this.blY),new a(this.brX,this.brY),{x:this.texX,y:this.texY,h:this.texH,w:this.texW,height:this.texH,width:this.texW},this.anchorAngle,this.glyphAngle,this.minScale,this.maxScale)}})},{"../util/struct_array":412,"../util/util":414,"./quads":373,"point-geometry":458}],379:[function(t,e,r){"use strict";var n=t("../util/dom"),i=t("point-geometry"),a={scrollZoom:t("./handler/scroll_zoom"),boxZoom:t("./handler/box_zoom"),dragRotate:t("./handler/drag_rotate"),dragPan:t("./handler/drag_pan"),keyboard:t("./handler/keyboard"),doubleClickZoom:t("./handler/dblclick_zoom"),touchZoomRotate:t("./handler/touch_zoom_rotate")};e.exports=function(t,e){var r=t.getCanvasContainer(),o=null,s=null,l=null;for(var c in a)t[c]=new a[c](t,e),e.interactive&&e[c]&&t[c].enable();function u(){l=null}function f(e,i){var a=n.mousePos(r,i);return t.fire(e,{lngLat:t.unproject(a),point:a,originalEvent:i})}function h(e,a){var o=n.touchPos(r,a),s=o.reduce(function(t,e,r,n){return t.add(e.div(n.length))},new i(0,0));return t.fire(e,{lngLat:t.unproject(s),point:s,lngLats:o.map(function(e){return t.unproject(e)},this),points:o,originalEvent:a})}r.addEventListener("mouseout",function(t){f("mouseout",t)},!1),r.addEventListener("mousedown",function(e){t.stop(),s=n.mousePos(r,e),f("mousedown",e)},!1),r.addEventListener("mouseup",function(e){var r=t.dragRotate&&t.dragRotate.isActive();o&&!r&&f("contextmenu",o);o=null,f("mouseup",e)},!1),r.addEventListener("mousemove",function(e){if(t.dragPan&&t.dragPan.isActive())return;if(t.dragRotate&&t.dragRotate.isActive())return;var n=e.toElement||e.target;for(;n&&n!==r;)n=n.parentNode;if(n!==r)return;f("mousemove",e)},!1),r.addEventListener("touchstart",function(e){if(t.stop(),h("touchstart",e),!e.touches||e.touches.length>1)return;l?(clearTimeout(l),l=null,f("dblclick",e)):l=setTimeout(u,300)},!1),r.addEventListener("touchend",function(t){h("touchend",t)},!1),r.addEventListener("touchmove",function(t){h("touchmove",t)},!1),r.addEventListener("touchcancel",function(t){h("touchcancel",t)},!1),r.addEventListener("click",function(t){n.mousePos(r,t).equals(s)&&f("click",t)},!1),r.addEventListener("dblclick",function(t){f("dblclick",t),t.preventDefault()},!1),r.addEventListener("contextmenu",function(t){o=t,t.preventDefault()},!1)}},{"../util/dom":400,"./handler/box_zoom":385,"./handler/dblclick_zoom":386,"./handler/drag_pan":387,"./handler/drag_rotate":388,"./handler/keyboard":389,"./handler/scroll_zoom":390,"./handler/touch_zoom_rotate":391,"point-geometry":458}],380:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate"),a=t("../util/browser"),o=t("../geo/lng_lat"),s=t("../geo/lng_lat_bounds"),l=t("point-geometry"),c=e.exports=function(){};n.extend(c.prototype,{getCenter:function(){return this.transform.center},setCenter:function(t,e){return this.jumpTo({center:t},e),this},panBy:function(t,e,r){return this.panTo(this.transform.center,n.extend({offset:l.convert(t).mult(-1)},e),r),this},panTo:function(t,e,r){return this.easeTo(n.extend({center:t},e),r)},getZoom:function(){return this.transform.zoom},setZoom:function(t,e){return this.jumpTo({zoom:t},e),this},zoomTo:function(t,e,r){return this.easeTo(n.extend({zoom:t},e),r)},zoomIn:function(t,e){return this.zoomTo(this.getZoom()+1,t,e),this},zoomOut:function(t,e){return this.zoomTo(this.getZoom()-1,t,e),this},getBearing:function(){return this.transform.bearing},setBearing:function(t,e){return this.jumpTo({bearing:t},e),this},rotateTo:function(t,e,r){return this.easeTo(n.extend({bearing:t},e),r)},resetNorth:function(t,e){return this.rotateTo(0,n.extend({duration:1e3},t),e),this},snapToNorth:function(t,e){return Math.abs(this.getBearing())<this._bearingSnap?this.resetNorth(t,e):this},getPitch:function(){return this.transform.pitch},setPitch:function(t,e){return this.jumpTo({pitch:t},e),this},fitBounds:function(t,e,r){e=n.extend({padding:0,offset:[0,0],maxZoom:1/0},e),t=s.convert(t);var i=l.convert(e.offset),a=this.transform,o=a.project(t.getNorthWest()),c=a.project(t.getSouthEast()),u=c.sub(o),f=(a.width-2*e.padding-2*Math.abs(i.x))/u.x,h=(a.height-2*e.padding-2*Math.abs(i.y))/u.y;return e.center=a.unproject(o.add(c).div(2)),e.zoom=Math.min(a.scaleZoom(a.scale*Math.min(f,h)),e.maxZoom),e.bearing=0,e.linear?this.easeTo(e,r):this.flyTo(e,r)},jumpTo:function(t,e){this.stop();var r=this.transform,n=!1,i=!1,a=!1;return"zoom"in t&&r.zoom!==+t.zoom&&(n=!0,r.zoom=+t.zoom),"center"in t&&(r.center=o.convert(t.center)),"bearing"in t&&r.bearing!==+t.bearing&&(i=!0,r.bearing=+t.bearing),"pitch"in t&&r.pitch!==+t.pitch&&(a=!0,r.pitch=+t.pitch),this.fire("movestart",e).fire("move",e),n&&this.fire("zoomstart",e).fire("zoom",e).fire("zoomend",e),i&&this.fire("rotate",e),a&&this.fire("pitch",e),this.fire("moveend",e)},easeTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],duration:500,easing:n.ease},t);var r,a,s=this.transform,c=l.convert(t.offset),u=this.getZoom(),f=this.getBearing(),h=this.getPitch(),d="zoom"in t?+t.zoom:u,p="bearing"in t?this._normalizeBearing(t.bearing,f):f,m="pitch"in t?+t.pitch:h;"center"in t?(r=o.convert(t.center),a=s.centerPoint.add(c)):"around"in t?(r=o.convert(t.around),a=s.locationPoint(r)):(a=s.centerPoint.add(c),r=s.pointLocation(a));var v=s.locationPoint(r);return!1===t.animate&&(t.duration=0),this.zooming=d!==u,this.rotating=f!==p,this.pitching=m!==h,t.noMoveStart||this.fire("movestart",e),this.zooming&&this.fire("zoomstart",e),clearTimeout(this._onEaseEnd),this._ease(function(t){this.zooming&&(s.zoom=i(u,d,t)),this.rotating&&(s.bearing=i(f,p,t)),this.pitching&&(s.pitch=i(h,m,t)),s.setLocationAtPoint(r,v.add(a.sub(v)._mult(t))),this.fire("move",e),this.zooming&&this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){t.delayEndEvents?this._onEaseEnd=setTimeout(this._easeToEnd.bind(this,e),t.delayEndEvents):this._easeToEnd(e)}.bind(this),t),this},_easeToEnd:function(t){var e=this.zooming;this.zooming=!1,this.rotating=!1,this.pitching=!1,e&&this.fire("zoomend",t),this.fire("moveend",t)},flyTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],speed:1.2,curve:1.42,easing:n.ease},t);var r=this.transform,a=l.convert(t.offset),s=this.getZoom(),c=this.getBearing(),u=this.getPitch(),f="center"in t?o.convert(t.center):this.getCenter(),h="zoom"in t?+t.zoom:s,d="bearing"in t?this._normalizeBearing(t.bearing,c):c,p="pitch"in t?+t.pitch:u;Math.abs(r.center.lng)+Math.abs(f.lng)>180&&(r.center.lng>0&&f.lng<0?f.lng+=360:r.center.lng<0&&f.lng>0&&(f.lng-=360));var m=r.zoomScale(h-s),v=r.point,g="center"in t?r.project(f).sub(a.div(m)):v,y=r.worldSize,b=t.curve,x=Math.max(r.width,r.height),_=x/m,w=g.sub(v).mag();if("minZoom"in t){var M=n.clamp(Math.min(t.minZoom,s,h),r.minZoom,r.maxZoom),k=x/r.zoomScale(M-s);b=Math.sqrt(k/w*2)}var A=b*b;function T(t){var e=(_*_-x*x+(t?-1:1)*A*A*w*w)/(2*(t?_:x)*A*w);return Math.log(Math.sqrt(e*e+1)-e)}function E(t){return(Math.exp(t)-Math.exp(-t))/2}function S(t){return(Math.exp(t)+Math.exp(-t))/2}var L=T(0),C=function(t){return S(L)/S(L+b*t)},P=function(t){return x*((S(L)*(E(e=L+b*t)/S(e))-E(L))/A)/w;var e},z=(T(1)-L)/b;if(Math.abs(w)<1e-6){if(Math.abs(x-_)<1e-6)return this.easeTo(t);var O=_<x?-1:1;z=Math.abs(Math.log(_/x))/b,P=function(){return 0},C=function(t){return Math.exp(O*b*t)}}if("duration"in t)t.duration=+t.duration;else{var D="screenSpeed"in t?+t.screenSpeed/b:+t.speed;t.duration=1e3*z/D}return this.zooming=!0,c!==d&&(this.rotating=!0),u!==p&&(this.pitching=!0),this.fire("movestart",e),this.fire("zoomstart",e),this._ease(function(t){var n=t*z,a=P(n);r.zoom=s+r.scaleZoom(1/C(n)),r.center=r.unproject(v.add(g.sub(v).mult(a)),y),this.rotating&&(r.bearing=i(c,d,t)),this.pitching&&(r.pitch=i(u,p,t)),this.fire("move",e),this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){this.zooming=!1,this.rotating=!1,this.pitching=!1,this.fire("zoomend",e),this.fire("moveend",e)},t),this},isEasing:function(){return!!this._abortFn},stop:function(){return this._abortFn&&(this._abortFn(),this._finishEase()),this},_ease:function(t,e,r){this._finishFn=e,this._abortFn=a.timed(function(e){t.call(this,r.easing(e)),1===e&&this._finishEase()},!1===r.animate?0:r.duration,this)},_finishEase:function(){delete this._abortFn;var t=this._finishFn;delete this._finishFn,t.call(this)},_normalizeBearing:function(t,e){t=n.wrap(t,-180,180);var r=Math.abs(t-e);return Math.abs(t-360-e)<r&&(t-=360),Math.abs(t+360-e)<r&&(t+=360),t},_updateEasing:function(t,e,r){var i;if(this.ease){var a=this.ease,o=(Date.now()-a.start)/a.duration,s=a.easing(o+.01)-a.easing(o),l=.27/Math.sqrt(s*s+1e-4)*.01,c=Math.sqrt(.0729-l*l);i=n.bezier(l,c,.25,1)}else i=r?n.bezier.apply(n,r):n.ease;return this.ease={start:(new Date).getTime(),to:Math.pow(2,e),duration:t,easing:i},i}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../util/browser":398,"../util/interpolate":408,"../util/util":414,"point-geometry":458}],381:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}e.exports=o,o.createAttributionString=function(t){var e=[];for(var r in t){var n=t[r];n.attribution&&e.indexOf(n.attribution)<0&&e.push(n.attribution)}return e.sort(function(t,e){return t.length-e.length}),(e=e.filter(function(t,r){for(var n=r+1;n<e.length;n++)if(e[n].indexOf(t)>=0)return!1;return!0})).join(" | ")},o.prototype=a.inherit(n,{options:{position:"bottom-right"},onAdd:function(t){var e=this._container=i.create("div","mapboxgl-ctrl-attrib",t.getContainer());return this._update(),t.on("source.load",this._update.bind(this)),t.on("source.change",this._update.bind(this)),t.on("source.remove",this._update.bind(this)),t.on("moveend",this._updateEditLink.bind(this)),e},_update:function(){this._map.style&&(this._container.innerHTML=o.createAttributionString(this._map.style.sources)),this._editLink=this._container.getElementsByClassName("mapbox-improve-map")[0],this._updateEditLink()},_updateEditLink:function(){if(this._editLink){var t=this._map.getCenter();this._editLink.href="https://www.mapbox.com/map-feedback/#/"+t.lng+"/"+t.lat+"/"+Math.round(this._map.getZoom()+1)}}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],382:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../../util/evented");function a(){}e.exports=a,a.prototype={addTo:function(t){this._map=t;var e=this._container=this.onAdd(t);if(this.options&&this.options.position){var r=this.options.position,n=t._controlCorners[r];e.className+=" mapboxgl-ctrl",-1!==r.indexOf("bottom")?n.insertBefore(e,n.firstChild):n.appendChild(e)}return this},remove:function(){return this._container.parentNode.removeChild(this._container),this.onRemove&&this.onRemove(this._map),this._map=null,this}},n.extend(a.prototype,i)},{"../../util/evented":406,"../../util/util":414}],383:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/browser"),a=t("../../util/dom"),o=t("../../util/util");e.exports=l;var s={enableHighAccuracy:!1,timeout:6e3};function l(t){o.setOptions(this,t)}l.prototype=o.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e=this._container=a.create("div","mapboxgl-ctrl-group",t.getContainer());return i.supportsGeolocation?(this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._geolocateButton=a.create("button","mapboxgl-ctrl-icon mapboxgl-ctrl-geolocate",this._container),this._geolocateButton.type="button",this._geolocateButton.addEventListener("click",this._onClickGeolocate.bind(this)),e):e},_onContextMenu:function(t){t.preventDefault()},_onClickGeolocate:function(){navigator.geolocation.getCurrentPosition(this._success.bind(this),this._error.bind(this),s),this._timeoutId=setTimeout(this._finish.bind(this),1e4)},_success:function(t){this._map.jumpTo({center:[t.coords.longitude,t.coords.latitude],zoom:17,bearing:0,pitch:0}),this.fire("geolocate",t),this._finish()},_error:function(t){this.fire("error",t),this._finish()},_finish:function(){this._timeoutId&&clearTimeout(this._timeoutId),this._timeoutId=void 0}})},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414,"./control":382}],384:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}function s(t){return new MouseEvent(t.type,{button:2,buttons:2,bubbles:!0,cancelable:!0,detail:t.detail,view:t.view,screenX:t.screenX,screenY:t.screenY,clientX:t.clientX,clientY:t.clientY,movementX:t.movementX,movementY:t.movementY,ctrlKey:t.ctrlKey,shiftKey:t.shiftKey,altKey:t.altKey,metaKey:t.metaKey})}e.exports=o,o.prototype=a.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e="mapboxgl-ctrl",r=this._container=i.create("div",e+"-group",t.getContainer());return this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._zoomInButton=this._createButton(e+"-icon "+e+"-zoom-in",t.zoomIn.bind(t)),this._zoomOutButton=this._createButton(e+"-icon "+e+"-zoom-out",t.zoomOut.bind(t)),this._compass=this._createButton(e+"-icon "+e+"-compass",t.resetNorth.bind(t)),this._compassArrow=i.create("div","arrow",this._compass),this._compass.addEventListener("mousedown",this._onCompassDown.bind(this)),this._onCompassMove=this._onCompassMove.bind(this),this._onCompassUp=this._onCompassUp.bind(this),t.on("rotate",this._rotateCompassArrow.bind(this)),this._rotateCompassArrow(),this._el=t.getCanvasContainer(),r},_onContextMenu:function(t){t.preventDefault()},_onCompassDown:function(t){0===t.button&&(i.disableDrag(),document.addEventListener("mousemove",this._onCompassMove),document.addEventListener("mouseup",this._onCompassUp),this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassMove:function(t){0===t.button&&(this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassUp:function(t){0===t.button&&(document.removeEventListener("mousemove",this._onCompassMove),document.removeEventListener("mouseup",this._onCompassUp),i.enableDrag(),this._el.dispatchEvent(s(t)),t.stopPropagation())},_createButton:function(t,e){var r=i.create("button",t,this._container);return r.type="button",r.addEventListener("click",function(){e()}),r},_rotateCompassArrow:function(){var t="rotate("+this._map.transform.angle*(180/Math.PI)+"deg)";this._compassArrow.style.transform=t}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],385:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../geo/lng_lat_bounds"),a=t("../../util/util");function o(t){this._map=t,this._el=t.getCanvasContainer(),this._container=t.getContainer(),a.bindHandlers(this)}e.exports=o,o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onMouseDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onMouseDown),this._enabled=!1)},_onMouseDown:function(t){t.shiftKey&&0===t.button&&(document.addEventListener("mousemove",this._onMouseMove,!1),document.addEventListener("keydown",this._onKeyDown,!1),document.addEventListener("mouseup",this._onMouseUp,!1),n.disableDrag(),this._startPos=n.mousePos(this._el,t),this._active=!0)},_onMouseMove:function(t){var e=this._startPos,r=n.mousePos(this._el,t);this._box||(this._box=n.create("div","mapboxgl-boxzoom",this._container),this._container.classList.add("mapboxgl-crosshair"),this._fireEvent("boxzoomstart",t));var i=Math.min(e.x,r.x),a=Math.max(e.x,r.x),o=Math.min(e.y,r.y),s=Math.max(e.y,r.y);n.setTransform(this._box,"translate("+i+"px,"+o+"px)"),this._box.style.width=a-i+"px",this._box.style.height=s-o+"px"},_onMouseUp:function(t){if(0===t.button){var e=this._startPos,r=n.mousePos(this._el,t),a=new i(this._map.unproject(e),this._map.unproject(r));this._finish(),e.x===r.x&&e.y===r.y?this._fireEvent("boxzoomcancel",t):this._map.fitBounds(a,{linear:!0}).fire("boxzoomend",{originalEvent:t,boxZoomBounds:a})}},_onKeyDown:function(t){27===t.keyCode&&(this._finish(),this._fireEvent("boxzoomcancel",t))},_finish:function(){this._active=!1,document.removeEventListener("mousemove",this._onMouseMove,!1),document.removeEventListener("keydown",this._onKeyDown,!1),document.removeEventListener("mouseup",this._onMouseUp,!1),this._container.classList.remove("mapboxgl-crosshair"),this._box&&(this._box.parentNode.removeChild(this._box),this._box=null),n.enableDrag()},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})}}},{"../../geo/lng_lat_bounds":312,"../../util/dom":400,"../../util/util":414}],386:[function(t,e,r){"use strict";function n(t){this._map=t,this._onDblClick=this._onDblClick.bind(this)}e.exports=n,n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._map.on("dblclick",this._onDblClick),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._map.off("dblclick",this._onDblClick),this._enabled=!1)},_onDblClick:function(t){this._map.zoomTo(this._map.getZoom()+(t.originalEvent.shiftKey?-1:1),{around:t.lngLat},t)}}},{}],387:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.3,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._el.addEventListener("touchstart",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._el.removeEventListener("touchstart",this._onDown),this._enabled=!1)},_onDown:function(t){this._ignoreEvent(t)||this.isActive()||(t.touches?(document.addEventListener("touchmove",this._onMove),document.addEventListener("touchend",this._onTouchEnd)):(document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onMouseUp)),this._active=!1,this._startPos=this._pos=n.mousePos(this._el,t),this._inertia=[[Date.now(),this._pos]])},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("dragstart",t),this._fireEvent("movestart",t));var e=n.mousePos(this._el,t),r=this._map;r.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),e]),r.transform.setLocationAtPoint(r.transform.pointLocation(this._pos),e),this._fireEvent("drag",t),this._fireEvent("move",t),this._pos=e,t.preventDefault()}},_onUp:function(t){if(this.isActive()){this._active=!1,this._fireEvent("dragend",t),this._drainInertiaBuffer();var e=function(){this._fireEvent("moveend",t)}.bind(this),r=this._inertia;if(r.length<2)e();else{var n=r[r.length-1],i=r[0],o=n[1].sub(i[1]),s=(n[0]-i[0])/1e3;if(0===s||n[1].equals(i[1]))e();else{var l=o.mult(.3/s),c=l.mag();c>1400&&(c=1400,l._unit()._mult(c));var u=c/750,f=l.mult(-u/2);this._map.panBy(f,{duration:1e3*u,easing:a,noMoveStart:!0},{originalEvent:t})}}}},_onMouseUp:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onMouseUp))},_onTouchEnd:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onTouchEnd))},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragRotate&&e.dragRotate.isActive())return!0;if(t.touches)return t.touches.length>1;if(t.ctrlKey)return!0;return"mousemove"===t.type?!1&t.buttons:0!==t.button},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],388:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("point-geometry"),a=t("../../util/util");e.exports=s;var o=a.bezier(0,0,.25,1);function s(t,e){this._map=t,this._el=t.getCanvasContainer(),this._bearingSnap=e.bearingSnap,a.bindHandlers(this)}s.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._enabled=!1)},_onDown:function(t){if(!this._ignoreEvent(t)&&!this.isActive()){document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onUp),this._active=!1,this._inertia=[[Date.now(),this._map.getBearing()]],this._startPos=this._pos=n.mousePos(this._el,t),this._center=this._map.transform.centerPoint;var e=this._startPos.sub(this._center);e.mag()<200&&(this._center=this._startPos.add(new i(-200,0)._rotate(e.angle()))),t.preventDefault()}},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("rotatestart",t),this._fireEvent("movestart",t));var e=this._map;e.stop();var r=this._pos,i=n.mousePos(this._el,t),a=this._center,o=r.sub(a).angleWith(i.sub(a))/Math.PI*180,s=e.getBearing()-o,l=this._inertia,c=l[l.length-1];this._drainInertiaBuffer(),l.push([Date.now(),e._normalizeBearing(s,c[1])]),e.transform.bearing=s,this._fireEvent("rotate",t),this._fireEvent("move",t),this._pos=i}},_onUp:function(t){if(!this._ignoreEvent(t)&&(document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onUp),this.isActive())){this._active=!1,this._fireEvent("rotateend",t),this._drainInertiaBuffer();var e=this._map,r=e.getBearing(),n=this._inertia,i=function(){Math.abs(r)<this._bearingSnap?e.resetNorth({noMoveStart:!0},{originalEvent:t}):this._fireEvent("moveend",t)}.bind(this);if(n.length<2)i();else{var a=n[0],s=n[n.length-1],l=n[n.length-2],c=e._normalizeBearing(r,l[1]),u=s[1]-a[1],f=u<0?-1:1,h=(s[0]-a[0])/1e3;if(0!==u&&0!==h){var d=Math.abs(u*(.25/h));d>180&&(d=180);var p=d/180;c+=f*d*(p/2),Math.abs(e._normalizeBearing(c,0))<this._bearingSnap&&(c=e._normalizeBearing(0,c)),e.rotateTo(c,{duration:1e3*p,easing:o,noMoveStart:!0},{originalEvent:t})}else i()}}},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragPan&&e.dragPan.isActive())return!0;if(t.touches)return t.touches.length>1;var r=t.ctrlKey?1:2,n=t.ctrlKey?0:2;return"mousemove"===t.type?t.buttons&0===r:t.button!==n},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414,"point-geometry":458}],389:[function(t,e,r){"use strict";e.exports=n;function n(t){this._map=t,this._el=t.getCanvasContainer(),this._onKeyDown=this._onKeyDown.bind(this)}n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("keydown",this._onKeyDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("keydown",this._onKeyDown),this._enabled=!1)},_onKeyDown:function(t){if(!(t.altKey||t.ctrlKey||t.metaKey)){var e=this._map,r={originalEvent:t};if(!e.isEasing())switch(t.keyCode){case 61:case 107:case 171:case 187:e.zoomTo(Math.round(e.getZoom())+(t.shiftKey?2:1),r);break;case 189:case 109:case 173:e.zoomTo(Math.round(e.getZoom())-(t.shiftKey?2:1),r);break;case 37:t.shiftKey?e.easeTo({bearing:e.getBearing()-2},r):(t.preventDefault(),e.panBy([-80,0],r));break;case 39:t.shiftKey?e.easeTo({bearing:e.getBearing()+2},r):(t.preventDefault(),e.panBy([80,0],r));break;case 38:t.shiftKey?e.easeTo({pitch:e.getPitch()+5},r):(t.preventDefault(),e.panBy([0,-80],r));break;case 40:t.shiftKey?e.easeTo({pitch:Math.max(e.getPitch()-5,0)},r):(t.preventDefault(),e.panBy([0,80],r))}}}}},{}],390:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/browser"),a=t("../../util/util");e.exports=c;var o="undefined"!=typeof navigator?navigator.userAgent.toLowerCase():"",s=-1!==o.indexOf("firefox"),l=-1!==o.indexOf("safari")&&-1===o.indexOf("chrom");function c(t){this._map=t,this._el=t.getCanvasContainer(),a.bindHandlers(this)}c.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("wheel",this._onWheel,!1),this._el.addEventListener("mousewheel",this._onWheel,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("wheel",this._onWheel),this._el.removeEventListener("mousewheel",this._onWheel),this._enabled=!1)},_onWheel:function(t){var e;"wheel"===t.type?(e=t.deltaY,s&&t.deltaMode===window.WheelEvent.DOM_DELTA_PIXEL&&(e/=i.devicePixelRatio),t.deltaMode===window.WheelEvent.DOM_DELTA_LINE&&(e*=40)):"mousewheel"===t.type&&(e=-t.wheelDeltaY,l&&(e/=3));var r=i.now(),a=r-(this._time||0);this._pos=n.mousePos(this._el,t),this._time=r,0!==e&&e%4.000244140625==0?(this._type="wheel",e=Math.floor(e/4)):0!==e&&Math.abs(e)<4?this._type="trackpad":a>400?(this._type=null,this._lastValue=e,this._timeout=setTimeout(this._onTimeout,40)):this._type||(this._type=Math.abs(a*e)<200?"trackpad":"wheel",this._timeout&&(clearTimeout(this._timeout),this._timeout=null,e+=this._lastValue)),t.shiftKey&&e&&(e/=4),this._type&&this._zoom(-e,t),t.preventDefault()},_onTimeout:function(){this._type="wheel",this._zoom(-this._lastValue)},_zoom:function(t,e){if(0!==t){var r=this._map,n=2/(1+Math.exp(-Math.abs(t/100)));t<0&&0!==n&&(n=1/n);var i=r.ease?r.ease.to:r.transform.scale,a=r.transform.scaleZoom(i*n);r.zoomTo(a,{duration:0,around:r.unproject(this._pos),delayEndEvents:200},{originalEvent:e})}}}},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414}],391:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.15,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("touchstart",this._onStart,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("touchstart",this._onStart),this._enabled=!1)},disableRotation:function(){this._rotationDisabled=!0},enableRotation:function(){this._rotationDisabled=!1},_onStart:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]);this._startVec=e.sub(r),this._startScale=this._map.transform.scale,this._startBearing=this._map.transform.bearing,this._gestureIntent=void 0,this._inertia=[],document.addEventListener("touchmove",this._onMove,!1),document.addEventListener("touchend",this._onEnd,!1)}},_onMove:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]),i=e.add(r).div(2),a=e.sub(r),o=a.mag()/this._startVec.mag(),s=this._rotationDisabled?0:180*a.angleWith(this._startVec)/Math.PI,l=this._map;if(this._gestureIntent){var c={duration:0,around:l.unproject(i)};"rotate"===this._gestureIntent&&(c.bearing=this._startBearing+s),"zoom"!==this._gestureIntent&&"rotate"!==this._gestureIntent||(c.zoom=l.transform.scaleZoom(this._startScale*o)),l.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),o,i]),l.easeTo(c,{originalEvent:t})}else{var u=Math.abs(1-o)>.15;Math.abs(s)>4?this._gestureIntent="rotate":u&&(this._gestureIntent="zoom"),this._gestureIntent&&(this._startVec=a,this._startScale=l.transform.scale,this._startBearing=l.transform.bearing)}t.preventDefault()}},_onEnd:function(t){document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onEnd),this._drainInertiaBuffer();var e=this._inertia,r=this._map;if(e.length<2)r.snapToNorth({},{originalEvent:t});else{var n=e[e.length-1],i=e[0],o=r.transform.scaleZoom(this._startScale*n[1]),s=r.transform.scaleZoom(this._startScale*i[1]),l=o-s,c=(n[0]-i[0])/1e3,u=n[2];if(0!==c&&o!==s){var f=.15*l/c;Math.abs(f)>2.5&&(f=f>0?2.5:-2.5);var h=1e3*Math.abs(f/(12*.15)),d=o+f*h/2e3;d<0&&(d=0),r.easeTo({zoom:d,duration:h,easing:a,around:r.unproject(u)},{originalEvent:t})}else r.snapToNorth({},{originalEvent:t})}},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>2&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],392:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util");function i(){n.bindAll(["_onHashChange","_updateHash"],this)}i.prototype={addTo:function(t){return this._map=t,window.addEventListener("hashchange",this._onHashChange,!1),this._map.on("moveend",this._updateHash),this},remove:function(){return window.removeEventListener("hashchange",this._onHashChange,!1),this._map.off("moveend",this._updateHash),delete this._map,this},_onHashChange:function(){var t=location.hash.replace("#","").split("/");return t.length>=3&&(this._map.jumpTo({center:[+t[2],+t[1]],zoom:+t[0],bearing:+(t[3]||0)}),!0)},_updateHash:function(){var t=this._map.getCenter(),e=this._map.getZoom(),r=this._map.getBearing(),n=Math.max(0,Math.ceil(Math.log(e)/Math.LN2)),i="#"+Math.round(100*e)/100+"/"+t.lat.toFixed(n)+"/"+t.lng.toFixed(n)+(r?"/"+Math.round(10*r)/10:"");window.history.replaceState("","",i)}}},{"../util/util":414}],393:[function(t,e,r){"use strict";var n=t("../util/canvas"),i=t("../util/util"),a=t("../util/browser"),o=t("../util/browser").window,s=t("../util/evented"),l=t("../util/dom"),c=t("../style/style"),u=t("../style/animation_loop"),f=t("../render/painter"),h=t("../geo/transform"),d=t("./hash"),p=t("./bind_handlers"),m=t("./camera"),v=t("../geo/lng_lat"),g=t("../geo/lng_lat_bounds"),y=t("point-geometry"),b=t("./control/attribution"),x={center:[0,0],zoom:0,bearing:0,pitch:0,minZoom:0,maxZoom:20,interactive:!0,scrollZoom:!0,boxZoom:!0,dragRotate:!0,dragPan:!0,keyboard:!0,doubleClickZoom:!0,touchZoomRotate:!0,bearingSnap:7,hash:!1,attributionControl:!0,failIfMajorPerformanceCaveat:!1,preserveDrawingBuffer:!1,trackResize:!0,workerCount:Math.max(a.hardwareConcurrency-1,1)},_=e.exports=function(t){if((t=i.extend({},x,t)).workerCount<1)throw new Error("workerCount must an integer greater than or equal to 1.");this._interactive=t.interactive,this._failIfMajorPerformanceCaveat=t.failIfMajorPerformanceCaveat,this._preserveDrawingBuffer=t.preserveDrawingBuffer,this._trackResize=t.trackResize,this._workerCount=t.workerCount,this._bearingSnap=t.bearingSnap,"string"==typeof t.container?this._container=document.getElementById(t.container):this._container=t.container,this.animationLoop=new u,this.transform=new h(t.minZoom,t.maxZoom),t.maxBounds&&this.setMaxBounds(t.maxBounds),i.bindAll(["_forwardStyleEvent","_forwardSourceEvent","_forwardLayerEvent","_forwardTileEvent","_onStyleLoad","_onStyleChange","_onSourceAdd","_onSourceRemove","_onSourceUpdate","_onWindowOnline","_onWindowResize","_update","_render"],this),this._setupContainer(),this._setupPainter(),this.on("move",this._update.bind(this,!1)),this.on("zoom",this._update.bind(this,!0)),this.on("moveend",function(){this.animationLoop.set(300),this._rerender()}.bind(this)),void 0!==o&&(o.addEventListener("online",this._onWindowOnline,!1),o.addEventListener("resize",this._onWindowResize,!1)),p(this,t),this._hash=t.hash&&(new d).addTo(this),this._hash&&this._hash._onHashChange()||this.jumpTo({center:t.center,zoom:t.zoom,bearing:t.bearing,pitch:t.pitch}),this.stacks={},this._classes=[],this.resize(),t.classes&&this.setClasses(t.classes),t.style&&this.setStyle(t.style),t.attributionControl&&this.addControl(new b(t.attributionControl));var e=this.fire.bind(this,"error");this.on("style.error",e),this.on("source.error",e),this.on("tile.error",e),this.on("layer.error",e)};function w(t){t.parentNode&&t.parentNode.removeChild(t)}i.extend(_.prototype,s),i.extend(_.prototype,m.prototype),i.extend(_.prototype,{addControl:function(t){return t.addTo(this),this},addClass:function(t,e){return this._classes.indexOf(t)>=0||""===t?this:(this._classes.push(t),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},removeClass:function(t,e){var r=this._classes.indexOf(t);return r<0||""===t?this:(this._classes.splice(r,1),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},setClasses:function(t,e){for(var r={},n=0;n<t.length;n++)""!==t[n]&&(r[t[n]]=!0);return this._classes=Object.keys(r),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0)},hasClass:function(t){return this._classes.indexOf(t)>=0},getClasses:function(){return this._classes},resize:function(){var t=0,e=0;return this._container&&(t=this._container.offsetWidth||400,e=this._container.offsetHeight||300),this._canvas.resize(t,e),this.transform.resize(t,e),this.painter.resize(t,e),this.fire("movestart").fire("move").fire("resize").fire("moveend")},getBounds:function(){var t=new g(this.transform.pointLocation(new y(0,0)),this.transform.pointLocation(this.transform.size));return(this.transform.angle||this.transform.pitch)&&(t.extend(this.transform.pointLocation(new y(this.transform.size.x,0))),t.extend(this.transform.pointLocation(new y(0,this.transform.size.y)))),t},setMaxBounds:function(t){if(t){var e=g.convert(t);this.transform.lngRange=[e.getWest(),e.getEast()],this.transform.latRange=[e.getSouth(),e.getNorth()],this.transform._constrain(),this._update()}else null!==t&&void 0!==t||(this.transform.lngRange=[],this.transform.latRange=[],this._update());return this},setMinZoom:function(t){if((t=null===t||void 0===t?0:t)>=0&&t<=this.transform.maxZoom)return this.transform.minZoom=t,this._update(),this.getZoom()<t&&this.setZoom(t),this;throw new Error("minZoom must be between 0 and the current maxZoom, inclusive")},setMaxZoom:function(t){if((t=null===t||void 0===t?20:t)>=this.transform.minZoom&&t<=20)return this.transform.maxZoom=t,this._update(),this.getZoom()>t&&this.setZoom(t),this;throw new Error("maxZoom must be between the current minZoom and 20, inclusive")},project:function(t){return this.transform.locationPoint(v.convert(t))},unproject:function(t){return this.transform.pointLocation(y.convert(t))},queryRenderedFeatures:function(){var t,e,r={};return 2===arguments.length?(t=arguments[0],r=arguments[1]):1===arguments.length&&((e=arguments[0])instanceof y||Array.isArray(e))?t=arguments[0]:1===arguments.length&&(r=arguments[0]),this.style.queryRenderedFeatures(this._makeQueryGeometry(t),r,this.transform.zoom,this.transform.angle)},_makeQueryGeometry:function(t){var e;if(void 0===t&&(t=[y.convert([0,0]),y.convert([this.transform.width,this.transform.height])]),t instanceof y||"number"==typeof t[0]){e=[y.convert(t)]}else{var r=[y.convert(t[0]),y.convert(t[1])];e=[r[0],new y(r[1].x,r[0].y),r[1],new y(r[0].x,r[1].y),r[0]]}return e=e.map(function(t){return this.transform.pointCoordinate(t)}.bind(this))},querySourceFeatures:function(t,e){return this.style.querySourceFeatures(t,e)},setStyle:function(t){return this.style&&(this.style.off("load",this._onStyleLoad).off("error",this._forwardStyleEvent).off("change",this._onStyleChange).off("source.add",this._onSourceAdd).off("source.remove",this._onSourceRemove).off("source.load",this._onSourceUpdate).off("source.error",this._forwardSourceEvent).off("source.change",this._onSourceUpdate).off("layer.add",this._forwardLayerEvent).off("layer.remove",this._forwardLayerEvent).off("layer.error",this._forwardLayerEvent).off("tile.add",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.load",this._update).off("tile.error",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent)._remove(),this.off("rotate",this.style._redoPlacement),this.off("pitch",this.style._redoPlacement)),t?(this.style=t instanceof c?t:new c(t,this.animationLoop,this._workerCount),this.style.on("load",this._onStyleLoad).on("error",this._forwardStyleEvent).on("change",this._onStyleChange).on("source.add",this._onSourceAdd).on("source.remove",this._onSourceRemove).on("source.load",this._onSourceUpdate).on("source.error",this._forwardSourceEvent).on("source.change",this._onSourceUpdate).on("layer.add",this._forwardLayerEvent).on("layer.remove",this._forwardLayerEvent).on("layer.error",this._forwardLayerEvent).on("tile.add",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.load",this._update).on("tile.error",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this.on("rotate",this.style._redoPlacement),this.on("pitch",this.style._redoPlacement),this):(this.style=null,this)},getStyle:function(){if(this.style)return this.style.serialize()},addSource:function(t,e){return this.style.addSource(t,e),this._update(!0),this},addSourceType:function(t,e,r){return this.style.addSourceType(t,e,r)},removeSource:function(t){return this.style.removeSource(t),this._update(!0),this},getSource:function(t){return this.style.getSource(t)},addLayer:function(t,e){return this.style.addLayer(t,e),this._update(!0),this},removeLayer:function(t){return this.style.removeLayer(t),this._update(!0),this},getLayer:function(t){return this.style.getLayer(t)},setFilter:function(t,e){return this.style.setFilter(t,e),this._update(!0),this},setLayerZoomRange:function(t,e,r){return this.style.setLayerZoomRange(t,e,r),this._update(!0),this},getFilter:function(t){return this.style.getFilter(t)},setPaintProperty:function(t,e,r,n){return this.style.setPaintProperty(t,e,r,n),this._update(!0),this},getPaintProperty:function(t,e,r){return this.style.getPaintProperty(t,e,r)},setLayoutProperty:function(t,e,r){return this.style.setLayoutProperty(t,e,r),this._update(!0),this},getLayoutProperty:function(t,e){return this.style.getLayoutProperty(t,e)},getContainer:function(){return this._container},getCanvasContainer:function(){return this._canvasContainer},getCanvas:function(){return this._canvas.getElement()},_setupContainer:function(){var t=this._container;t.classList.add("mapboxgl-map");var e=this._canvasContainer=l.create("div","mapboxgl-canvas-container",t);this._interactive&&e.classList.add("mapboxgl-interactive"),this._canvas=new n(this,e);var r=this._controlContainer=l.create("div","mapboxgl-control-container",t),i=this._controlCorners={};["top-left","top-right","bottom-left","bottom-right"].forEach(function(t){i[t]=l.create("div","mapboxgl-ctrl-"+t,r)})},_setupPainter:function(){var t=this._canvas.getWebGLContext({failIfMajorPerformanceCaveat:this._failIfMajorPerformanceCaveat,preserveDrawingBuffer:this._preserveDrawingBuffer});t?this.painter=new f(t,this.transform):this.fire("error",{error:new Error("Failed to initialize WebGL")})},_contextLost:function(t){t.preventDefault(),this._frameId&&a.cancelFrame(this._frameId),this.fire("webglcontextlost",{originalEvent:t})},_contextRestored:function(t){this._setupPainter(),this.resize(),this._update(),this.fire("webglcontextrestored",{originalEvent:t})},loaded:function(){return!this._styleDirty&&!this._sourcesDirty&&!(!this.style||!this.style.loaded())},_update:function(t){return this.style?(this._styleDirty=this._styleDirty||t,this._sourcesDirty=!0,this._rerender(),this):this},_render:function(){try{this.style&&this._styleDirty&&(this._styleDirty=!1,this.style.update(this._classes,this._classOptions),this._classOptions=null,this.style._recalculate(this.transform.zoom)),this.style&&this._sourcesDirty&&(this._sourcesDirty=!1,this.style._updateSources(this.transform)),this.painter.render(this.style,{debug:this.showTileBoundaries,showOverdrawInspector:this._showOverdrawInspector,vertices:this.vertices,rotating:this.rotating,zooming:this.zooming}),this.fire("render"),this.loaded()&&!this._loaded&&(this._loaded=!0,this.fire("load")),this._frameId=null,this.animationLoop.stopped()||(this._styleDirty=!0),(this._sourcesDirty||this._repaint||this._styleDirty)&&this._rerender()}catch(t){this.fire("error",{error:t})}return this},remove:function(){this._hash&&this._hash.remove(),a.cancelFrame(this._frameId),this.setStyle(null),void 0!==o&&o.removeEventListener("resize",this._onWindowResize,!1);var t=this.painter.gl.getExtension("WEBGL_lose_context");t&&t.loseContext(),w(this._canvasContainer),w(this._controlContainer),this._container.classList.remove("mapboxgl-map")},_rerender:function(){this.style&&!this._frameId&&(this._frameId=a.frame(this._render))},_forwardStyleEvent:function(t){this.fire("style."+t.type,i.extend({style:t.target},t))},_forwardSourceEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardLayerEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardTileEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_onStyleLoad:function(t){this.transform.unmodified&&this.jumpTo(this.style.stylesheet),this.style.update(this._classes,{transition:!1}),this._forwardStyleEvent(t)},_onStyleChange:function(t){this._update(!0),this._forwardStyleEvent(t)},_onSourceAdd:function(t){var e=t.source;e.onAdd&&e.onAdd(this),this._forwardSourceEvent(t)},_onSourceRemove:function(t){var e=t.source;e.onRemove&&e.onRemove(this),this._forwardSourceEvent(t)},_onSourceUpdate:function(t){this._update(),this._forwardSourceEvent(t)},_onWindowOnline:function(){this._update()},_onWindowResize:function(){this._trackResize&&this.stop().resize()._update()}}),i.extendAll(_.prototype,{_showTileBoundaries:!1,get showTileBoundaries(){return this._showTileBoundaries},set showTileBoundaries(t){this._showTileBoundaries!==t&&(this._showTileBoundaries=t,this._update())},_showCollisionBoxes:!1,get showCollisionBoxes(){return this._showCollisionBoxes},set showCollisionBoxes(t){this._showCollisionBoxes!==t&&(this._showCollisionBoxes=t,this.style._redoPlacement())},_showOverdrawInspector:!1,get showOverdrawInspector(){return this._showOverdrawInspector},set showOverdrawInspector(t){this._showOverdrawInspector!==t&&(this._showOverdrawInspector=t,this._update())},_repaint:!1,get repaint(){return this._repaint},set repaint(t){this._repaint=t,this._update()},_vertices:!1,get vertices(){return this._vertices},set vertices(t){this._vertices=t,this._update()}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../geo/transform":313,"../render/painter":327,"../style/animation_loop":347,"../style/style":350,"../util/browser":398,"../util/canvas":399,"../util/dom":400,"../util/evented":406,"../util/util":414,"./bind_handlers":379,"./camera":380,"./control/attribution":381,"./hash":392,"point-geometry":458}],394:[function(t,e,r){"use strict";e.exports=o;var n=t("../util/dom"),i=t("../geo/lng_lat"),a=t("point-geometry");function o(t,e){t||(t=n.create("div")),t.classList.add("mapboxgl-marker"),this._el=t,this._offset=a.convert(e&&e.offset||[0,0]),this._update=this._update.bind(this)}o.prototype={addTo:function(t){return this.remove(),this._map=t,t.getCanvasContainer().appendChild(this._el),t.on("move",this._update),this._update(),this},remove:function(){this._map&&(this._map.off("move",this._update),this._map=null);var t=this._el.parentNode;return t&&t.removeChild(this._el),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=i.convert(t),this._update(),this},getElement:function(){return this._el},_update:function(){if(this._map){var t=this._map.project(this._lngLat)._add(this._offset);n.setTransform(this._el,"translate("+t.x+"px,"+t.y+"px)")}}}},{"../geo/lng_lat":311,"../util/dom":400,"point-geometry":458}],395:[function(t,e,r){"use strict";e.exports=s;var n=t("../util/util"),i=t("../util/evented"),a=t("../util/dom"),o=t("../geo/lng_lat");function s(t){n.setOptions(this,t),n.bindAll(["_update","_onClickClose"],this)}s.prototype=n.inherit(i,{options:{closeButton:!0,closeOnClick:!0},addTo:function(t){return this._map=t,this._map.on("move",this._update),this.options.closeOnClick&&this._map.on("click",this._onClickClose),this._update(),this},remove:function(){return this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._container&&(this._container.parentNode.removeChild(this._container),delete this._container),this._map&&(this._map.off("move",this._update),this._map.off("click",this._onClickClose),delete this._map),this.fire("close"),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=o.convert(t),this._update(),this},setText:function(t){return this.setDOMContent(document.createTextNode(t))},setHTML:function(t){var e,r=document.createDocumentFragment(),n=document.createElement("body");for(n.innerHTML=t;e=n.firstChild;)r.appendChild(e);return this.setDOMContent(r)},setDOMContent:function(t){return this._createContent(),this._content.appendChild(t),this._update(),this},_createContent:function(){this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._content=a.create("div","mapboxgl-popup-content",this._container),this.options.closeButton&&(this._closeButton=a.create("button","mapboxgl-popup-close-button",this._content),this._closeButton.type="button",this._closeButton.innerHTML="&#215;",this._closeButton.addEventListener("click",this._onClickClose))},_update:function(){if(this._map&&this._lngLat&&this._content){this._container||(this._container=a.create("div","mapboxgl-popup",this._map.getContainer()),this._tip=a.create("div","mapboxgl-popup-tip",this._container),this._container.appendChild(this._content));var t=this._map.project(this._lngLat).round(),e=this.options.anchor;if(!e){var r=this._container.offsetWidth,n=this._container.offsetHeight;e=t.y<n?["top"]:t.y>this._map.transform.height-n?["bottom"]:[],t.x<r/2?e.push("left"):t.x>this._map.transform.width-r/2&&e.push("right"),e=0===e.length?"bottom":e.join("-")}var i={top:"translate(-50%,0)","top-left":"translate(0,0)","top-right":"translate(-100%,0)",bottom:"translate(-50%,-100%)","bottom-left":"translate(0,-100%)","bottom-right":"translate(-100%,-100%)",left:"translate(0,-50%)",right:"translate(-100%,-50%)"},o=this._container.classList;for(var s in i)o.remove("mapboxgl-popup-anchor-"+s);o.add("mapboxgl-popup-anchor-"+e),a.setTransform(this._container,i[e]+" translate("+t.x+"px,"+t.y+"px)")}},_onClickClose:function(){this.remove()}})},{"../geo/lng_lat":311,"../util/dom":400,"../util/evented":406,"../util/util":414}],396:[function(t,e,r){"use strict";function n(t,e){this.target=t,this.parent=e,this.callbacks={},this.callbackID=0,this.receive=this.receive.bind(this),this.target.addEventListener("message",this.receive,!1)}e.exports=n,n.prototype.receive=function(t){var e,r=t.data,n=r.id;if("<response>"===r.type)e=this.callbacks[r.id],delete this.callbacks[r.id],e&&e(r.error||null,r.data);else if(void 0!==r.id&&this.parent[r.type])this.parent[r.type](r.data,a.bind(this));else if(void 0!==r.id&&this.parent.workerSources){var i=r.type.split(".");this.parent.workerSources[i[0]][i[1]](r.data,a.bind(this))}else this.parent[r.type](r.data);function a(t,e,r){this.postMessage({type:"<response>",id:String(n),error:t?String(t):null,data:e},r)}},n.prototype.send=function(t,e,r,n){var i=null;r&&(this.callbacks[i=this.callbackID++]=r),this.postMessage({type:t,id:String(i),data:e},n)},n.prototype.postMessage=function(t,e){this.target.postMessage(t,e)}},{}],397:[function(t,e,r){"use strict";r.getJSON=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.setRequestHeader("Accept","application/json"),r.onerror=function(t){e(t)},r.onload=function(){if(r.status>=200&&r.status<300&&r.response){var t;try{t=JSON.parse(r.response)}catch(t){return e(t)}e(null,t)}else e(new Error(r.statusText))},r.send(),r},r.getArrayBuffer=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.responseType="arraybuffer",r.onerror=function(t){e(t)},r.onload=function(){r.status>=200&&r.status<300&&r.response?e(null,r.response):e(new Error(r.statusText))},r.send(),r},r.getImage=function(t,e){return r.getArrayBuffer(t,function(t,r){if(t)return e(t);var n=new Image;n.onload=function(){e(null,n),(window.URL||window.webkitURL).revokeObjectURL(n.src)};var i=new Blob([new Uint8Array(r)],{type:"image/png"});return n.src=(window.URL||window.webkitURL).createObjectURL(i),n.getData=function(){var t=document.createElement("canvas"),e=t.getContext("2d");return t.width=n.width,t.height=n.height,e.drawImage(n,0,0),e.getImageData(0,0,n.width,n.height).data},n})},r.getVideo=function(t,e){var r,n,i=document.createElement("video");i.onloadstart=function(){e(null,i)};for(var a=0;a<t.length;a++){var o=document.createElement("source");r=t[a],n=void 0,(n=document.createElement("a")).href=r,(n.protocol!==document.location.protocol||n.host!==document.location.host)&&(i.crossOrigin="Anonymous"),o.src=t[a],i.appendChild(o)}return i.getData=function(){return i},i}},{}],398:[function(t,e,r){"use strict";r.window=window,e.exports.now=window.performance&&window.performance.now?window.performance.now.bind(window.performance):Date.now.bind(Date);var n=window.requestAnimationFrame||window.mozRequestAnimationFrame||window.webkitRequestAnimationFrame||window.msRequestAnimationFrame;r.frame=function(t){return n(t)};var i=window.cancelAnimationFrame||window.mozCancelAnimationFrame||window.webkitCancelAnimationFrame||window.msCancelAnimationFrame;r.cancelFrame=function(t){i(t)},r.timed=function(t,n,i){if(!n)return t.call(i,1),null;var a=!1,o=e.exports.now();return r.frame(function s(l){a||((l=e.exports.now())>=o+n?t.call(i,1):(t.call(i,(l-o)/n),r.frame(s)))}),function(){a=!0}},r.supported=t("mapbox-gl-supported"),r.hardwareConcurrency=navigator.hardwareConcurrency||4,Object.defineProperty(r,"devicePixelRatio",{get:function(){return window.devicePixelRatio}}),r.supportsWebp=!1;var a=document.createElement("img");a.onload=function(){r.supportsWebp=!0},a.src="data:image/webp;base64,UklGRh4AAABXRUJQVlA4TBEAAAAvAQAAAAfQ//73v/+BiOh/AAA=",r.supportsGeolocation=!!navigator.geolocation},{"mapbox-gl-supported":299}],399:[function(t,e,r){"use strict";var n=t("../util"),i=t("mapbox-gl-supported");function a(t,e){this.canvas=document.createElement("canvas"),t&&e&&(this.canvas.style.position="absolute",this.canvas.classList.add("mapboxgl-canvas"),this.canvas.addEventListener("webglcontextlost",t._contextLost.bind(t),!1),this.canvas.addEventListener("webglcontextrestored",t._contextRestored.bind(t),!1),this.canvas.setAttribute("tabindex",0),e.appendChild(this.canvas))}e.exports=a,a.prototype.resize=function(t,e){var r=window.devicePixelRatio||1;this.canvas.width=r*t,this.canvas.height=r*e,this.canvas.style.width=t+"px",this.canvas.style.height=e+"px"},a.prototype.getWebGLContext=function(t){return t=n.extend({},t,i.webGLContextAttributes),this.canvas.getContext("webgl",t)||this.canvas.getContext("experimental-webgl",t)},a.prototype.getElement=function(){return this.canvas}},{"../util":414,"mapbox-gl-supported":299}],400:[function(t,e,r){"use strict";var n=t("point-geometry");r.create=function(t,e,r){var n=document.createElement(t);return e&&(n.className=e),r&&r.appendChild(n),n};var i=document.documentElement.style;function a(t){for(var e=0;e<t.length;e++)if(t[e]in i)return t[e]}var o,s=a(["userSelect","MozUserSelect","WebkitUserSelect","msUserSelect"]);r.disableDrag=function(){s&&(o=i[s],i[s]="none")},r.enableDrag=function(){s&&(i[s]=o)};var l=a(["transform","WebkitTransform"]);function c(t){t.preventDefault(),t.stopPropagation(),window.removeEventListener("click",c,!0)}r.setTransform=function(t,e){t.style[l]=e},r.suppressClick=function(){window.addEventListener("click",c,!0),window.setTimeout(function(){window.removeEventListener("click",c,!0)},0)},r.mousePos=function(t,e){var r=t.getBoundingClientRect();return e=e.touches?e.touches[0]:e,new n(e.clientX-r.left-t.clientLeft,e.clientY-r.top-t.clientTop)},r.touchPos=function(t,e){for(var r=t.getBoundingClientRect(),i=[],a=0;a<e.touches.length;a++)i.push(new n(e.touches[a].clientX-r.left-t.clientLeft,e.touches[a].clientY-r.top-t.clientTop));return i}},{"point-geometry":458}],401:[function(t,e,r){"use strict";var n=t("webworkify");e.exports=function(){return new n(t("../../source/worker"))}},{"../../source/worker":345,webworkify:558}],402:[function(t,e,r){"use strict";var n=t("quickselect");function i(t,e){return e.area-t.area}function a(t){for(var e,r,n=0,i=0,a=t.length,o=a-1;i<a;o=i++)e=t[i],n+=((r=t[o]).x-e.x)*(e.y+r.y);return n}e.exports=function(t,e){var r=t.length;if(r<=1)return[t];for(var o,s,l=[],c=0;c<r;c++){var u=a(t[c]);0!==u&&(t[c].area=Math.abs(u),void 0===s&&(s=u<0),s===u<0?(o&&l.push(o),o=[t[c]]):o.push(t[c]))}if(o&&l.push(o),e>1)for(var f=0;f<l.length;f++)l[f].length<=e||(n(l[f],e,1,l[f].length-1,i),l[f]=l[f].slice(0,e));return l}},{quickselect:475}],403:[function(t,e,r){"use strict";e.exports={API_URL:"https://api.mapbox.com",REQUIRE_ACCESS_TOKEN:!0}},{}],404:[function(t,e,r){"use strict";var n=t("assert");function i(t){this._stringToNumber={},this._numberToString=[];for(var e=0;e<t.length;e++){var r=t[e];this._stringToNumber[r]=e,this._numberToString[e]=r}}e.exports=i,i.prototype.encode=function(t){return n(t in this._stringToNumber),this._stringToNumber[t]},i.prototype.decode=function(t){return n(t<this._numberToString.length),this._numberToString[t]}},{assert:51}],405:[function(t,e,r){"use strict";var n=t("./util"),i=t("./actor"),a=t("./web_worker");function o(t,e){this.actors=[],this.currentActor=0;for(var r=0;r<t;r++){var n=new a,o=new i(n,e);o.name="Worker "+r,this.actors.push(o)}}e.exports=o,o.prototype={broadcast:function(t,e,r){r=r||function(){},n.asyncAll(this.actors,function(r,n){r.send(t,e,n)},r)},send:function(t,e,r,n,i){return("number"!=typeof n||isNaN(n))&&(n=this.currentActor=(this.currentActor+1)%this.actors.length),this.actors[n].send(t,e,r,i),n},remove:function(){for(var t=0;t<this.actors.length;t++)this.actors[t].target.terminate();this.actors=[]}}},{"./actor":396,"./util":414,"./web_worker":401}],406:[function(t,e,r){"use strict";var n=t("./util"),i={on:function(t,e){return this._events=this._events||{},this._events[t]=this._events[t]||[],this._events[t].push(e),this},off:function(t,e){if(!t)return delete this._events,this;if(!this.listens(t))return this;if(e){var r=this._events[t].indexOf(e);r>=0&&this._events[t].splice(r,1),this._events[t].length||delete this._events[t]}else delete this._events[t];return this},once:function(t,e){var r=function(n){this.off(t,r),e.call(this,n)}.bind(this);return this.on(t,r),this},fire:function(t,e){if(!this.listens(t))return n.endsWith(t,"error")&&console.error(e&&e.error||e||"Empty error event"),this;e=n.extend({},e),n.extend(e,{type:t,target:this});for(var r=this._events[t].slice(),i=0;i<r.length;i++)r[i].call(this,e);return this},listens:function(t){return!(!this._events||!this._events[t])}};e.exports=i},{"./util":414}],407:[function(t,e,r){"use strict";function n(t,e,r){if(1===t){var n=r.readMessage(i,{glyphs:{}});e.push(n)}}function i(t,e,r){if(1===t)e.name=r.readString();else if(2===t)e.range=r.readString();else if(3===t){var n=r.readMessage(a,{});e.glyphs[n.id]=n}}function a(t,e,r){1===t?e.id=r.readVarint():2===t?e.bitmap=r.readBytes():3===t?e.width=r.readVarint():4===t?e.height=r.readVarint():5===t?e.left=r.readSVarint():6===t?e.top=r.readSVarint():7===t&&(e.advance=r.readVarint())}e.exports=function(t,e){this.stacks=t.readFields(n,[],e)}},{}],408:[function(t,e,r){"use strict";function n(t,e,r){return t*(1-r)+e*r}e.exports=n,n.number=n,n.vec2=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r)]},n.color=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r),n(t[2],e[2],r),n(t[3],e[3],r)]},n.array=function(t,e,r){return t.map(function(t,i){return n(t,e[i],r)})}},{}],409:[function(t,e,r){"use strict";function n(t,e,r){if(t.length>1){if(i(t,e))return!0;for(var n=0;n<e.length;n++)if(s(e[n],t,r))return!0}for(var a=0;a<t.length;a++)if(s(t[a],e,r))return!0;return!1}function i(t,e){for(var r=0;r<t.length-1;r++)for(var n=t[r],i=t[r+1],a=0;a<e.length-1;a++){if(o(n,i,e[a],e[a+1]))return!0}return!1}function a(t,e,r){return(r.y-t.y)*(e.x-t.x)>(e.y-t.y)*(r.x-t.x)}function o(t,e,r,n){return a(t,r,n)!==a(e,r,n)&&a(t,e,r)!==a(t,e,n)}function s(t,e,r){var n=r*r;if(1===e.length)return t.distSqr(e[0])<n;for(var i=1;i<e.length;i++){if(l(t,e[i-1],e[i])<n)return!0}return!1}function l(t,e,r){var n=e.distSqr(r);if(0===n)return t.distSqr(e);var i=((t.x-e.x)*(r.x-e.x)+(t.y-e.y)*(r.y-e.y))/n;return i<0?t.distSqr(e):i>1?t.distSqr(r):t.distSqr(r.sub(e)._mult(i)._add(e))}function c(t,e){for(var r,n,i,a=!1,o=0;o<t.length;o++)for(var s=0,l=(r=t[o]).length-1;s<r.length;l=s++)n=r[s],i=r[l],n.y>e.y!=i.y>e.y&&e.x<(i.x-n.x)*(e.y-n.y)/(i.y-n.y)+n.x&&(a=!a);return a}function u(t,e){for(var r=!1,n=0,i=t.length-1;n<t.length;i=n++){var a=t[n],o=t[i];a.y>e.y!=o.y>e.y&&e.x<(o.x-a.x)*(e.y-a.y)/(o.y-a.y)+a.x&&(r=!r)}return r}e.exports={multiPolygonIntersectsBufferedMultiPoint:function(t,e,r){for(var n=0;n<t.length;n++)for(var i=t[n],a=0;a<e.length;a++)for(var o=e[a],l=0;l<o.length;l++){var c=o[l];if(u(i,c))return!0;if(s(c,i,r))return!0}return!1},multiPolygonIntersectsMultiPolygon:function(t,e){if(1===t.length&&1===t[0].length)return c(e,t[0][0]);for(var r=0;r<e.length;r++)for(var n=e[r],a=0;a<n.length;a++)if(c(t,n[a]))return!0;for(var o=0;o<t.length;o++){for(var s=t[o],l=0;l<s.length;l++)if(c(e,s[l]))return!0;for(var u=0;u<e.length;u++)if(i(s,e[u]))return!0}return!1},multiPolygonIntersectsBufferedMultiLine:function(t,e,r){for(var i=0;i<e.length;i++)for(var a=e[i],o=0;o<t.length;o++){var s=t[o];if(s.length>=3)for(var l=0;l<a.length;l++)if(u(s,a[l]))return!0;if(n(s,a,r))return!0}return!1}}},{}],410:[function(t,e,r){"use strict";function n(t,e){this.max=t,this.onRemove=e,this.reset()}e.exports=n,n.prototype.reset=function(){for(var t in this.data)this.onRemove(this.data[t]);return this.data={},this.order=[],this},n.prototype.add=function(t,e){if(this.has(t))this.order.splice(this.order.indexOf(t),1),this.data[t]=e,this.order.push(t);else if(this.data[t]=e,this.order.push(t),this.order.length>this.max){var r=this.get(this.order[0]);r&&this.onRemove(r)}return this},n.prototype.has=function(t){return t in this.data},n.prototype.keys=function(){return this.order},n.prototype.get=function(t){if(!this.has(t))return null;var e=this.data[t];return delete this.data[t],this.order.splice(this.order.indexOf(t),1),e},n.prototype.setMaxSize=function(t){for(this.max=t;this.order.length>this.max;){var e=this.get(this.order[0]);e&&this.onRemove(e)}return this}},{}],411:[function(t,e,r){"use strict";var n=t("./config"),i=t("./browser"),a=t("url"),o=t("./util");function s(t,e,r){if(!(r=r||n.ACCESS_TOKEN)&&n.REQUIRE_ACCESS_TOKEN)throw new Error("An API access token is required to use Mapbox GL. See https://www.mapbox.com/developers/api/#access-tokens");if(t=t.replace(/^mapbox:\/\//,n.API_URL+e),t+=-1!==t.indexOf("?")?"&access_token=":"?access_token=",n.REQUIRE_ACCESS_TOKEN){if("s"===r[0])throw new Error("Use a public access token (pk.*) with Mapbox GL JS, not a secret access token (sk.*). See https://www.mapbox.com/developers/api/#access-tokens");t+=r}return t}function l(t){return t?"?"+t:""}e.exports.normalizeStyleURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox:/"+r.pathname+l(r.query),"/styles/v1/",e)},e.exports.normalizeSourceURL=function(t,e){return"mapbox:"!==a.parse(t).protocol?t:s(t+".json","/v4/",e)+"&secure"},e.exports.normalizeGlyphsURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox://"+r.pathname.split("/")[1]+"/{fontstack}/{range}.pbf"+l(r.query),"/fonts/v1/",e)},e.exports.normalizeSpriteURL=function(t,e,r,n){var i=a.parse(t);return"mapbox:"!==i.protocol?(i.pathname+=e+r,a.format(i)):s("mapbox:/"+i.pathname+"/sprite"+e+r+l(i.query),"/styles/v1/",n)},e.exports.normalizeTileURL=function(t,e,r){var s=a.parse(t,!0);if(!e)return t;if("mapbox:"!==a.parse(e).protocol)return t;var l,c=i.supportsWebp?".webp":"$1",u=i.devicePixelRatio>=2||512===r?"@2x":"";return 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l=0,c=0;c<3;++c)l+=Math.pow(r[c]-e[c],2);this.radius.set(t,.5*Math.log(Math.max(l,1e-6))),this.center.set(t,r[0],r[1],r[2])},h.translate=function(t,e,r,n){this.center.move(t,e||0,r||0,n||0)},h.setMatrix=function(t,e){var r=this.computedRotation;s(r,e[0],e[1],e[2],e[4],e[5],e[6],e[8],e[9],e[10]),u(r,r),this.rotation.set(t,r[0],r[1],r[2],r[3]);var n=this.computedMatrix;o(n,e);var i=n[15];if(Math.abs(i)>1e-6){var a=n[12]/i,l=n[13]/i,c=n[14]/i;this.recalcMatrix(t);var f=Math.exp(this.computedRadius[0]);this.center.set(t,a-n[2]*f,l-n[6]*f,c-n[10]*f),this.radius.idle(t)}else this.center.idle(t),this.radius.idle(t)},h.setDistance=function(t,e){e>0&&this.radius.set(t,Math.log(e))},h.setDistanceLimits=function(t,e){t=t>0?Math.log(t):-1/0,e=e>0?Math.log(e):1/0,e=Math.max(e,t),this.radius.bounds[0][0]=t,this.radius.bounds[1][0]=e},h.getDistanceLimits=function(t){var e=this.radius.bounds;return 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translate, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\nuniform float miterLimit, dashLength, miterMode;\n\nvarying vec4 fragColor;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 tangent;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nconst float MAX_LINES = 256.;\nconst float REVERSE_THRESHOLD = -.875;\nconst float MIN_DIST = 1.;\n\n//TODO: possible optimizations: avoid overcalculating all for vertices and calc just one instead\n//TODO: precalculate dot products, normalize things beforehead etc.\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nbool isNaN( float val ){\n  return ( val < 0.0 || 0.0 < val || val == 0.0 ) ? false : true;\n}\n\nvoid main() {\n\tvec2 aCoord = aCoord, bCoord = bCoord, prevCoord = prevCoord, nextCoord = nextCoord;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineBot = 1. - lineTop;\n\tfloat depth = (MAX_LINES - 1. - id) / MAX_LINES;\n\n\tfragColor = (lineStart * aColor + lineEnd * bColor) / 255.;\n\n\tif (isNaN(aCoord.x) || isNaN(aCoord.y) || isNaN(bCoord.x) || isNaN(bCoord.y)) return;\n\n\tif (aCoord == prevCoord) prevCoord = aCoord + normalize(bCoord - aCoord);\n\tif (bCoord == nextCoord) nextCoord = bCoord - normalize(bCoord - aCoord);\n\n\tvec2 prevDiff = aCoord - prevCoord;\n\tvec2 currDiff = bCoord - aCoord;\n\tvec2 nextDiff = nextCoord - bCoord;\n\n\tvec2 prevDirection = normalize(prevDiff);\n\tvec2 currDirection = normalize(currDiff);\n\tvec2 nextDirection = normalize(nextDiff);\n\n\tvec2 prevTangent = normalize(prevDiff * scaleRatio);\n\tvec2 currTangent = normalize(currDiff * scaleRatio);\n\tvec2 nextTangent = normalize(nextDiff * scaleRatio);\n\n\tvec2 prevNormal = vec2(-prevTangent.y, prevTangent.x);\n\tvec2 currNormal = vec2(-currTangent.y, currTangent.x);\n\tvec2 nextNormal = vec2(-nextTangent.y, nextTangent.x);\n\n\tvec2 startJoinDirection = normalize(prevTangent - currTangent);\n\tvec2 endJoinDirection = normalize(currTangent - nextTangent);\n\n\t//collapsed/unidirectional segment cases\n\tif (prevDirection == currDirection) {\n\t\tstartJoinDirection = currNormal;\n\t}\n\tif (nextDirection == currDirection) {\n\t\tendJoinDirection = currNormal;\n\t}\n\tif (aCoord == bCoord) {\n\t\tendJoinDirection = startJoinDirection;\n\t\tcurrNormal = prevNormal;\n\t\tcurrTangent = prevTangent;\n\t}\n\n\ttangent = currTangent;\n\n\t//calculate join shifts relative to normals\n\tfloat startJoinShift = dot(currNormal, startJoinDirection);\n\tfloat endJoinShift = dot(currNormal, endJoinDirection);\n\n\tfloat startMiterRatio = abs(1. / startJoinShift);\n\tfloat endMiterRatio = abs(1. / endJoinShift);\n\n\tvec2 startJoin = startJoinDirection * startMiterRatio;\n\tvec2 endJoin = endJoinDirection * endMiterRatio;\n\n\tvec2 startTopJoin, startBotJoin, endTopJoin, endBotJoin;\n\tstartTopJoin = sign(startJoinShift) * startJoin * .5;\n\tstartBotJoin = -startTopJoin;\n\n\tendTopJoin = sign(endJoinShift) * endJoin * .5;\n\tendBotJoin = -endTopJoin;\n\n\tvec2 aTopCoord = aCoord + normalWidth * startTopJoin;\n\tvec2 bTopCoord = bCoord + normalWidth * endTopJoin;\n\tvec2 aBotCoord = aCoord + normalWidth * startBotJoin;\n\tvec2 bBotCoord = bCoord + normalWidth * endBotJoin;\n\n\t//miter anti-clipping\n\tfloat baClipping = distToLine(bCoord, aCoord, aBotCoord) / dot(normalize(normalWidth * endBotJoin), normalize(normalWidth.yx * vec2(-startBotJoin.y, startBotJoin.x)));\n\tfloat abClipping = distToLine(aCoord, bCoord, bTopCoord) / dot(normalize(normalWidth * startBotJoin), normalize(normalWidth.yx * vec2(-endBotJoin.y, endBotJoin.x)));\n\n\t//prevent close to reverse direction switch\n\tbool prevReverse = dot(currTangent, prevTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, prevNormal)) * min(length(prevDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\tbool nextReverse = dot(currTangent, nextTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, nextNormal)) * min(length(nextDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\n\tif (prevReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * startJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / startMiterRatio, 1.);\n\t\taBotCoord = aCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\taTopCoord = aCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!nextReverse && baClipping > 0. && baClipping < length(normalWidth * endBotJoin)) {\n\t\t//handle miter clipping\n\t\tbTopCoord -= normalWidth * endTopJoin;\n\t\tbTopCoord += normalize(endTopJoin * normalWidth) * baClipping;\n\t}\n\n\tif (nextReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * endJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / endMiterRatio, 1.);\n\t\tbBotCoord = bCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\tbTopCoord = bCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!prevReverse && abClipping > 0. && abClipping < length(normalWidth * startBotJoin)) {\n\t\t//handle miter clipping\n\t\taBotCoord -= normalWidth * startBotJoin;\n\t\taBotCoord += normalize(startBotJoin * normalWidth) * abClipping;\n\t}\n\n\tvec2 aTopPosition = (aTopCoord) * scale + translate;\n\tvec2 aBotPosition = (aBotCoord) * scale + translate;\n\n\tvec2 bTopPosition = (bTopCoord) * scale + translate;\n\tvec2 bBotPosition = (bBotCoord) * scale + translate;\n\n\t//position is normalized 0..1 coord on the screen\n\tvec2 position = (aTopPosition * lineTop + aBotPosition * lineBot) * lineStart + (bTopPosition * lineTop + bBotPosition * lineBot) * lineEnd;\n\n\tstartCoord = aCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\tendCoord = bCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\n\tgl_Position = vec4(position  * 2.0 - 1.0, depth, 1);\n\n\tenableStartMiter = step(dot(currTangent, prevTangent), .5);\n\tenableEndMiter = step(dot(currTangent, nextTangent), .5);\n\n\t//bevel miter cutoffs\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * miterLimit * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * miterLimit * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n\n\t//round miter cutoffs\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * abs(dot(startJoinDirection, currNormal)) * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * abs(dot(endJoinDirection, currNormal)) * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id, miterMode;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nvoid main() {\n\tfloat alpha = 1., distToStart, distToEnd;\n\tfloat cutoff = thickness * .5;\n\n\t//bevel miter\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToStart + 1., 0.), 1.);\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToEnd + 1., 0.), 1.);\n\t\t}\n\t}\n\n\t// round miter\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - startCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - endCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\t}\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * dash;\n}\n"]),attributes:{lineEnd:{buffer:v,divisor:0,stride:8,offset:0},lineTop:{buffer:v,divisor:0,stride:8,offset:4},aColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset},divisor:1},bColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset+4},divisor:1},prevCoord:{buffer:g,stride:8,offset:function(t,e){return 8*e.offset},divisor:1},aCoord:{buffer:g,stride:8,offset:function(t,e){return 8+8*e.offset},divisor:1},bCoord:{buffer:g,stride:8,offset:function(t,e){return 16+8*e.offset},divisor:1},nextCoord:{buffer:g,stride:8,offset:function(t,e){return 24+8*e.offset},divisor:1}}},T)),d=t(a({vert:o(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec2 aCoord, bCoord, aCoordFract, bCoordFract;\nattribute vec4 color;\nattribute float lineEnd, lineTop;\n\nuniform vec2 scale, scaleFract, translate, translateFract, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nconst float MAX_LINES = 256.;\n\nvec2 project(vec2 position, vec2 positionFract, vec2 scale, vec2 scaleFract, vec2 translate, vec2 translateFract) {\n\t// the order is important\n\treturn position * scale + translate\n       + positionFract * scale + translateFract\n       + position * scaleFract\n       + positionFract * scaleFract;\n}\n\nvoid main() {\n\t// vec2 scaleRatio = scale * viewport.zw;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineOffset = lineTop * 2. - 1.;\n\tfloat depth = (MAX_LINES - 1. - id) / (MAX_LINES);\n\n\tvec2 diff = (bCoord + bCoordFract - aCoord - aCoordFract);\n\ttangent = normalize(diff * scaleRatio);\n\tvec2 normal = vec2(-tangent.y, tangent.x);\n\n\tvec2 position = project(aCoord, aCoordFract, scale, scaleFract, translate, translateFract) * lineStart\n\t\t+ project(bCoord, bCoordFract, scale, scaleFract, translate, translateFract) * lineEnd\n\n\t\t+ thickness * normal * .5 * lineOffset / viewport.zw;\n\n\tgl_Position = vec4(position * 2.0 - 1.0, depth, 1);\n\n\tfragColor = color / 255.;\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nvoid main() {\n\tfloat alpha = 1.;\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * 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n.baseCalendar,i(a.prototype,{name:"Mayan",jdEpoch:584282.5,hasYearZero:!0,minMonth:0,firstMonth:0,minDay:0,regionalOptions:{"":{name:"Mayan",epochs:["",""],monthNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],monthNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],dayNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesMin:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],digits:null,dateFormat:"YYYY.m.d",firstDay:0,isRTL:!1,haabMonths:["Pop","Uo","Zip","Zotz","Tzec","Xul","Yaxkin","Mol","Chen","Yax","Zac","Ceh","Mac","Kankin","Muan","Pax","Kayab","Cumku","Uayeb"],tzolkinMonths:["Imix","Ik","Akbal","Kan","Chicchan","Cimi","Manik","Lamat","Muluc","Oc","Chuen","Eb","Ben","Ix","Men","Cib","Caban","Etznab","Cauac","Ahau"]}},leapYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),!1},formatYear:function(t){t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year();var e=Math.floor(t/400);return t%=400,t+=t<0?400:0,e+"."+Math.floor(t/20)+"."+t%20},forYear:function(t){if((t=t.split(".")).length<3)throw"Invalid Mayan year";for(var e=0,r=0;r<t.length;r++){var n=parseInt(t[r],10);if(Math.abs(n)>19||r>0&&n<0)throw"Invalid Mayan year";e=20*e+n}return e},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),18},weekOfYear:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),0},daysInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),360},daysInMonth:function(t,e){return this._validate(t,e,this.minDay,n.local.invalidMonth),20},daysInWeek:function(){return 5},dayOfWeek:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate).day()},weekDay:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),!0},extraInfo:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate).toJD(),a=this._toHaab(i),o=this._toTzolkin(i);return{haabMonthName:this.local.haabMonths[a[0]-1],haabMonth:a[0],haabDay:a[1],tzolkinDayName:this.local.tzolkinMonths[o[0]-1],tzolkinDay:o[0],tzolkinTrecena:o[1]}},_toHaab:function(t){var e=o((t-=this.jdEpoch)+8+340,365);return[Math.floor(e/20)+1,o(e,20)]},_toTzolkin:function(t){return[s((t-=this.jdEpoch)+20,20),s(t+4,13)]},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);return i.day()+20*i.month()+360*i.year()+this.jdEpoch},fromJD:function(t){t=Math.floor(t)+.5-this.jdEpoch;var e=Math.floor(t/360);t%=360,t+=t<0?360:0;var r=Math.floor(t/20),n=t%20;return this.newDate(e,r,n)}}),n.calendars.mayan=a},{"../main":575,"object-assign":443}],569:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new 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n.add(1-(n.dayOfWeek()||7),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInMonth:function(t,e){var r=this._validate(t,e,this.minDay,n.local.invalidMonth);return this.daysPerMonth[r.month()-1]+(12===r.month()&&this.leapYear(r.year())?1:0)},weekDay:function(t,e,r){return(this.dayOfWeek(t,e,r)||7)<6},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidMonth);(t=i.year())<0&&t++;for(var a=i.day(),s=1;s<i.month();s++)a+=this.daysPerMonth[s-1];return a+o.toJD(t+1468,3,13)},fromJD:function(t){t=Math.floor(t+.5);for(var e=Math.floor((t-(this.jdEpoch-1))/366);t>=this.toJD(e+1,1,1);)e++;for(var r=t-Math.floor(this.toJD(e,1,1)+.5)+1,n=1;r>this.daysInMonth(e,n);)r-=this.daysInMonth(e,n),n++;return this.newDate(e,n,r)}}),n.calendars.nanakshahi=a},{"../main":575,"object-assign":443}],570:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new n.baseCalendar,i(a.prototype,{name:"Nepali",jdEpoch:1700709.5,daysPerMonth:[31,31,32,32,31,30,30,29,30,29,30,30],hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,daysPerYear:365,regionalOptions:{"":{name:"Nepali",epochs:["BBS","ABS"],monthNames:["Baisakh","Jestha","Ashadh","Shrawan","Bhadra","Ashwin","Kartik","Mangsir","Paush","Mangh","Falgun","Chaitra"],monthNamesShort:["Bai","Je","As","Shra","Bha","Ash","Kar","Mang","Pau","Ma","Fal","Chai"],dayNames:["Aaitabaar","Sombaar","Manglbaar","Budhabaar","Bihibaar","Shukrabaar","Shanibaar"],dayNamesShort:["Aaita","Som","Mangl","Budha","Bihi","Shukra","Shani"],dayNamesMin:["Aai","So","Man","Bu","Bi","Shu","Sha"],digits:null,dateFormat:"dd/mm/yyyy",firstDay:1,isRTL:!1}},leapYear:function(t){return this.daysInYear(t)!==this.daysPerYear},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){if(t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year(),void 0===this.NEPALI_CALENDAR_DATA[t])return this.daysPerYear;for(var e=0,r=this.minMonth;r<=12;r++)e+=this.NEPALI_CALENDAR_DATA[t][r];return e},daysInMonth:function(t,e){return t.year&&(e=t.month(),t=t.year()),this._validate(t,e,this.minDay,n.local.invalidMonth),void 0===this.NEPALI_CALENDAR_DATA[t]?this.daysPerMonth[e-1]:this.NEPALI_CALENDAR_DATA[t][e]},weekDay:function(t,e,r){return 6!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);t=i.year(),e=i.month(),r=i.day();var a=n.instance(),o=0,s=e,l=t;this._createMissingCalendarData(t);var c=t-(s>9||9===s&&r>=this.NEPALI_CALENDAR_DATA[l][0]?56:57);for(9!==e&&(o=r,s--);9!==s;)s<=0&&(s=12,l--),o+=this.NEPALI_CALENDAR_DATA[l][s],s--;return 9===e?(o+=r-this.NEPALI_CALENDAR_DATA[l][0])<0&&(o+=a.daysInYear(c)):o+=this.NEPALI_CALENDAR_DATA[l][9]-this.NEPALI_CALENDAR_DATA[l][0],a.newDate(c,1,1).add(o,"d").toJD()},fromJD:function(t){var e=n.instance().fromJD(t),r=e.year(),i=e.dayOfYear(),a=r+56;this._createMissingCalendarData(a);for(var o=9,s=this.NEPALI_CALENDAR_DATA[a][0],l=this.NEPALI_CALENDAR_DATA[a][o]-s+1;i>l;)++o>12&&(o=1,a++),l+=this.NEPALI_CALENDAR_DATA[a][o];var c=this.NEPALI_CALENDAR_DATA[a][o]-(l-i);return this.newDate(a,o,c)},_createMissingCalendarData:function(t){var e=this.daysPerMonth.slice(0);e.unshift(17);for(var r=t-1;r<t+2;r++)void 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n.baseCalendar,i(a.prototype,{name:"UmmAlQura",hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,regionalOptions:{"":{name:"Umm al-Qura",epochs:["BH","AH"],monthNames:["Al-Muharram","Safar","Rabi' al-awwal","Rabi' Al-Thani","Jumada Al-Awwal","Jumada Al-Thani","Rajab","Sha'aban","Ramadan","Shawwal","Dhu al-Qi'dah","Dhu al-Hijjah"],monthNamesShort:["Muh","Saf","Rab1","Rab2","Jum1","Jum2","Raj","Sha'","Ram","Shaw","DhuQ","DhuH"],dayNames:["Yawm al-Ahad","Yawm al-Ithnain","Yawm al-Thal\u0101th\u0101\u2019","Yawm al-Arba\u2018\u0101\u2019","Yawm al-Kham\u012bs","Yawm al-Jum\u2018a","Yawm al-Sabt"],dayNamesMin:["Ah","Ith","Th","Ar","Kh","Ju","Sa"],digits:null,dateFormat:"yyyy/mm/dd",firstDay:6,isRTL:!0}},leapYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear);return 355===this.daysInYear(e.year())},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){for(var e=0,r=1;r<=12;r++)e+=this.daysInMonth(t,r);return e},daysInMonth:function(t,e){for(var r=this._validate(t,e,this.minDay,n.local.invalidMonth).toJD()-24e5+.5,i=0,a=0;a<o.length;a++){if(o[a]>r)return o[i]-o[i-1];i++}return 30},weekDay:function(t,e,r){return 5!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate),a=12*(i.year()-1)+i.month()-15292;return i.day()+o[a-1]-1+24e5-.5},fromJD:function(t){for(var e=t-24e5+.5,r=0,n=0;n<o.length&&!(o[n]>e);n++)r++;var i=r+15292,a=Math.floor((i-1)/12),s=a+1,l=i-12*a,c=e-o[r-1]+1;return this.newDate(s,l,c)},isValid:function(t,e,r){var i=n.baseCalendar.prototype.isValid.apply(this,arguments);return i&&(i=(t=null!=t.year?t.year:t)>=1276&&t<=1500),i},_validate:function(t,e,r,i){var a=n.baseCalendar.prototype._validate.apply(this,arguments);if(a.year<1276||a.year>1500)throw i.replace(/\{0\}/,this.local.name);return a}}),n.calendars.ummalqura=a;var 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n=t("object-assign");function i(){this.regionalOptions=[],this.regionalOptions[""]={invalidCalendar:"Calendar {0} not found",invalidDate:"Invalid {0} date",invalidMonth:"Invalid {0} month",invalidYear:"Invalid {0} year",differentCalendars:"Cannot mix {0} and {1} dates"},this.local=this.regionalOptions[""],this.calendars={},this._localCals={}}function a(t,e,r,n){if(this._calendar=t,this._year=e,this._month=r,this._day=n,0===this._calendar._validateLevel&&!this._calendar.isValid(this._year,this._month,this._day))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name)}function o(t,e){return"000000".substring(0,e-(t=""+t).length)+t}function s(){this.shortYearCutoff="+10"}function l(t){this.local=this.regionalOptions[t]||this.regionalOptions[""]}n(i.prototype,{instance:function(t,e){t=(t||"gregorian").toLowerCase(),e=e||"";var r=this._localCals[t+"-"+e];if(!r&&this.calendars[t]&&(r=new this.calendars[t](e),this._localCals[t+"-"+e]=r),!r)throw(this.local.invalidCalendar||this.regionalOptions[""].invalidCalendar).replace(/\{0\}/,t);return r},newDate:function(t,e,r,n,i){return(n=(null!=t&&t.year?t.calendar():"string"==typeof n?this.instance(n,i):n)||this.instance()).newDate(t,e,r)},substituteDigits:function(t){return function(e){return(e+"").replace(/[0-9]/g,function(e){return t[e]})}},substituteChineseDigits:function(t,e){return function(r){for(var n="",i=0;r>0;){var a=r%10;n=(0===a?"":t[a]+e[i])+n,i++,r=Math.floor(r/10)}return 0===n.indexOf(t[1]+e[1])&&(n=n.substr(1)),n||t[0]}}}),n(a.prototype,{newDate:function(t,e,r){return this._calendar.newDate(null==t?this:t,e,r)},year:function(t){return 0===arguments.length?this._year:this.set(t,"y")},month:function(t){return 0===arguments.length?this._month:this.set(t,"m")},day:function(t){return 0===arguments.length?this._day:this.set(t,"d")},date:function(t,e,r){if(!this._calendar.isValid(t,e,r))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name);return this._year=t,this._month=e,this._day=r,this},leapYear:function(){return this._calendar.leapYear(this)},epoch:function(){return this._calendar.epoch(this)},formatYear:function(){return this._calendar.formatYear(this)},monthOfYear:function(){return this._calendar.monthOfYear(this)},weekOfYear:function(){return this._calendar.weekOfYear(this)},daysInYear:function(){return this._calendar.daysInYear(this)},dayOfYear:function(){return this._calendar.dayOfYear(this)},daysInMonth:function(){return this._calendar.daysInMonth(this)},dayOfWeek:function(){return this._calendar.dayOfWeek(this)},weekDay:function(){return this._calendar.weekDay(this)},extraInfo:function(){return this._calendar.extraInfo(this)},add:function(t,e){return this._calendar.add(this,t,e)},set:function(t,e){return this._calendar.set(this,t,e)},compareTo:function(t){if(this._calendar.name!==t._calendar.name)throw(c.local.differentCalendars||c.regionalOptions[""].differentCalendars).replace(/\{0\}/,this._calendar.local.name).replace(/\{1\}/,t._calendar.local.name);var e=this._year!==t._year?this._year-t._year:this._month!==t._month?this.monthOfYear()-t.monthOfYear():this._day-t._day;return 0===e?0:e<0?-1:1},calendar:function(){return this._calendar},toJD:function(){return this._calendar.toJD(this)},fromJD:function(t){return this._calendar.fromJD(t)},toJSDate:function(){return this._calendar.toJSDate(this)},fromJSDate:function(t){return this._calendar.fromJSDate(t)},toString:function(){return(this.year()<0?"-":"")+o(Math.abs(this.year()),4)+"-"+o(this.month(),2)+"-"+o(this.day(),2)}}),n(s.prototype,{_validateLevel:0,newDate:function(t,e,r){return null==t?this.today():(t.year&&(this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),r=t.day(),e=t.month(),t=t.year()),new a(this,t,e,r))},today:function(){return this.fromJSDate(new Date)},epoch:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear).year()<0?this.local.epochs[0]:this.local.epochs[1]},formatYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return(e.year()<0?"-":"")+o(Math.abs(e.year()),4)},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear),12},monthOfYear:function(t,e){var r=this._validate(t,e,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth);return(r.month()+this.monthsInYear(r)-this.firstMonth)%this.monthsInYear(r)+this.minMonth},fromMonthOfYear:function(t,e){var r=(e+this.firstMonth-2*this.minMonth)%this.monthsInYear(t)+this.minMonth;return this._validate(t,r,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth),r},daysInYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return this.leapYear(e)?366:365},dayOfYear:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return n.toJD()-this.newDate(n.year(),this.fromMonthOfYear(n.year(),this.minMonth),this.minDay).toJD()+1},daysInWeek:function(){return 7},dayOfWeek:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return(Math.floor(this.toJD(n))+2)%this.daysInWeek()},extraInfo:function(t,e,r){return this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),{}},add:function(t,e,r){return this._validate(t,this.minMonth,this.minDay,c.local.invalidDate||c.regionalOptions[""].invalidDate),this._correctAdd(t,this._add(t,e,r),e,r)},_add:function(t,e,r){if(this._validateLevel++,"d"===r||"w"===r){var n=t.toJD()+e*("w"===r?this.daysInWeek():1),i=t.calendar().fromJD(n);return this._validateLevel--,[i.year(),i.month(),i.day()]}try{var a=t.year()+("y"===r?e:0),o=t.monthOfYear()+("m"===r?e:0);i=t.day();"y"===r?(t.month()!==this.fromMonthOfYear(a,o)&&(o=this.newDate(a,t.month(),this.minDay).monthOfYear()),o=Math.min(o,this.monthsInYear(a)),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o)))):"m"===r&&(!function(t){for(;o<t.minMonth;)a--,o+=t.monthsInYear(a);for(var e=t.monthsInYear(a);o>e-1+t.minMonth;)a++,o-=e,e=t.monthsInYear(a)}(this),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o))));var s=[a,this.fromMonthOfYear(a,o),i];return this._validateLevel--,s}catch(t){throw 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r,n,a,o,s=i.getFromId(t,e.xref),l=i.getFromId(t,e.yref),c=3*e.arrowsize*e.arrowwidth||0,u=3*e.startarrowsize*e.arrowwidth||0;s&&s.autorange&&(r=c+e.xshift,n=c-e.xshift,a=u+e.xshift,o=u-e.xshift,e.axref===e.xref?(i.expand(s,[s.r2c(e.x)],{ppadplus:r,ppadminus:n}),i.expand(s,[s.r2c(e.ax)],{ppadplus:Math.max(e._xpadplus,a),ppadminus:Math.max(e._xpadminus,o)})):(a=e.ax?a+e.ax:a,o=e.ax?o-e.ax:o,i.expand(s,[s.r2c(e.x)],{ppadplus:Math.max(e._xpadplus,r,a),ppadminus:Math.max(e._xpadminus,n,o)}))),l&&l.autorange&&(r=c-e.yshift,n=c+e.yshift,a=u-e.yshift,o=u+e.yshift,e.ayref===e.yref?(i.expand(l,[l.r2c(e.y)],{ppadplus:r,ppadminus:n}),i.expand(l,[l.r2c(e.ay)],{ppadplus:Math.max(e._ypadplus,a),ppadminus:Math.max(e._ypadminus,o)})):(a=e.ay?a+e.ay:a,o=e.ay?o-e.ay:o,i.expand(l,[l.r2c(e.y)],{ppadplus:Math.max(e._ypadplus,r,a),ppadminus:Math.max(e._ypadminus,n,o)})))})}e.exports=function(t){var e=t._fullLayout,r=n.filterVisible(e.annotations);if(r.length&&t._fullData.length){var s={};for(var l in r.forEach(function(t){s[t.xref]=1,s[t.yref]=1}),s){var c=i.getFromId(t,l);if(c&&c.autorange)return n.syncOrAsync([a,o],t)}}}},{"../../lib":724,"../../plots/cartesian/axes":770,"./draw":587}],583:[function(t,e,r){"use strict";var n=t("../../plotly");function i(t,e){var r,n,i,o,s,l,c,u=t._fullLayout.annotations,f=[],h=[],d=[],p=(e||[]).length;for(r=0;r<u.length;r++)if(o=(i=u[r]).clicktoshow){for(n=0;n<p;n++)if(l=(s=e[n]).xaxis,c=s.yaxis,l._id===i.xref&&c._id===i.yref&&l.d2r(s.x)===a(i._xclick,l)&&c.d2r(s.y)===a(i._yclick,c)){(i.visible?"onout"===o?h:d:f).push(r);break}n===p&&i.visible&&"onout"===o&&h.push(r)}return{on:f,off:h,explicitOff:d}}function a(t,e){return"log"===e.type?e.l2r(t):e.d2r(t)}e.exports={hasClickToShow:function(t,e){var r=i(t,e);return r.on.length>0||r.explicitOff.length>0},onClick:function(t,e){var r,a=i(t,e),o=a.on,s=a.off.concat(a.explicitOff),l={};if(!o.length&&!s.length)return;for(r=0;r<o.length;r++)l["annotations["+o[r]+"].visible"]=!0;for(r=0;r<s.length;r++)l["annotations["+s[r]+"].visible"]=!1;return n.update(t,{},l)}}},{"../../plotly":765}],584:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../color");e.exports=function(t,e,r,a){a("opacity");var o=a("bgcolor"),s=a("bordercolor"),l=i.opacity(s);a("borderpad");var c=a("borderwidth"),u=a("showarrow");if(a("text",u?" ":r._dfltTitle.annotation),a("textangle"),n.coerceFont(a,"font",r.font),a("width"),a("align"),a("height")&&a("valign"),u){var f,h,d=a("arrowside");-1!==d.indexOf("end")&&(f=a("arrowhead"),h=a("arrowsize")),-1!==d.indexOf("start")&&(a("startarrowhead",f),a("startarrowsize",h)),a("arrowcolor",l?e.bordercolor:i.defaultLine),a("arrowwidth",2*(l&&c||1)),a("standoff"),a("startstandoff")}var p=a("hovertext"),m=r.hoverlabel||{};if(p){var v=a("hoverlabel.bgcolor",m.bgcolor||(i.opacity(o)?i.rgb(o):i.defaultLine)),g=a("hoverlabel.bordercolor",m.bordercolor||i.contrast(v));n.coerceFont(a,"hoverlabel.font",{family:m.font.family,size:m.font.size,color:m.font.color||g})}a("captureevents",!!p)}},{"../../lib":724,"../color":598}],585:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib/to_log_range");e.exports=function(t,e,r,a){e=e||{};var o="log"===r&&"linear"===e.type,s="linear"===r&&"log"===e.type;if(o||s)for(var l,c,u=t._fullLayout.annotations,f=e._id.charAt(0),h=0;h<u.length;h++)l=u[h],c="annotations["+h+"].",l[f+"ref"]===e._id&&d(f),l["a"+f+"ref"]===e._id&&d("a"+f);function d(t){var r=l[t],s=null;s=o?i(r,e.range):Math.pow(10,r),n(s)||(s=null),a(c+t,s)}}},{"../../lib/to_log_range":749,"fast-isnumeric":140}],586:[function(t,e,r){"use strict";var n=t("../../plots/array_container_defaults"),i=t("./annotation_defaults");e.exports=function(t,e){n(t,e,{name:"annotations",handleItemDefaults:i})}},{"../../plots/array_container_defaults":767,"./annotation_defaults":579}],587:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../plotly"),a=t("../../plots/plots"),o=t("../../lib"),s=t("../../plots/cartesian/axes"),l=t("../color"),c=t("../drawing"),u=t("../fx"),f=t("../../lib/svg_text_utils"),h=t("../../lib/setcursor"),d=t("../dragelement"),p=t("./draw_arrow_head");function m(t,e){var r=t._fullLayout.annotations[e]||{};v(t,r,e,!1,s.getFromId(t,r.xref),s.getFromId(t,r.yref))}function v(t,e,r,a,s,m){var v,g,y=t._fullLayout,b=t._fullLayout._size,x=t._context.edits;a?(v="annotation-"+a,g=a+".annotations["+r+"]"):(v="annotation",g="annotations["+r+"]"),y._infolayer.selectAll("."+v+'[data-index="'+r+'"]').remove();var _="clip"+y._uid+"_ann"+r;if(e._input&&!1!==e.visible){var w={x:{},y:{}},M=+e.textangle||0,k=y._infolayer.append("g").classed(v,!0).attr("data-index",String(r)).style("opacity",e.opacity),A=k.append("g").classed("annotation-text-g",!0),T=x[e.showarrow?"annotationTail":"annotationPosition"],E=e.captureevents||x.annotationText||T,S=A.append("g").style("pointer-events",E?"all":null).call(h,"default").on("click",function(){t._dragging=!1;var i={index:r,annotation:e._input,fullAnnotation:e,event:n.event};a&&(i.subplotId=a),t.emit("plotly_clickannotation",i)});e.hovertext&&S.on("mouseover",function(){var r=e.hoverlabel,n=r.font,i=this.getBoundingClientRect(),a=t.getBoundingClientRect();u.loneHover({x0:i.left-a.left,x1:i.right-a.left,y:(i.top+i.bottom)/2-a.top,text:e.hovertext,color:r.bgcolor,borderColor:r.bordercolor,fontFamily:n.family,fontSize:n.size,fontColor:n.color},{container:y._hoverlayer.node(),outerContainer:y._paper.node(),gd:t})}).on("mouseout",function(){u.loneUnhover(y._hoverlayer.node())});var L=e.borderwidth,C=e.borderpad,P=L+C,z=S.append("rect").attr("class","bg").style("stroke-width",L+"px").call(l.stroke,e.bordercolor).call(l.fill,e.bgcolor),O=e.width||e.height,D=y._topclips.selectAll("#"+_).data(O?[0]:[]);D.enter().append("clipPath").classed("annclip",!0).attr("id",_).append("rect"),D.exit().remove();var I=e.font,R=S.append("text").classed("annotation-text",!0).text(e.text);x.annotationText?R.call(f.makeEditable,{delegate:S,gd:t}).call(N).on("edit",function(r){e.text=r,this.call(N);var n={};n[g+".text"]=e.text,s&&s.autorange&&(n[s._name+".autorange"]=!0),m&&m.autorange&&(n[m._name+".autorange"]=!0),i.relayout(t,n)}):R.call(N)}else n.selectAll("#"+_).remove();function N(r){return r.call(c.font,I).attr({"text-anchor":{left:"start",right:"end"}[e.align]||"middle"}),f.convertToTspans(r,t,F),r}function F(){var r=R.selectAll("a");1===r.size()&&r.text()===R.text()&&S.insert("a",":first-child").attr({"xlink:xlink:href":r.attr("xlink:href"),"xlink:xlink:show":r.attr("xlink:show")}).style({cursor:"pointer"}).node().appendChild(z.node());var n=S.select(".annotation-text-math-group"),u=!n.empty(),v=c.bBox((u?n:R).node()),E=v.width,C=v.height,I=e.width||E,N=e.height||C,F=Math.round(I+2*P),j=Math.round(N+2*P);function B(t,e){return"auto"===e&&(e=t<1/3?"left":t>2/3?"right":"center"),{center:0,middle:0,left:.5,bottom:-.5,right:-.5,top:.5}[e]}e._w=I,e._h=N;for(var U=!1,V=["x","y"],q=0;q<V.length;q++){var H,G,Y,W,X,Z=V[q],J=e[Z+"ref"]||Z,K=e["a"+Z+"ref"],Q={x:s,y:m}[Z],$=(M+("x"===Z?0:-90))*Math.PI/180,tt=F*Math.cos($),et=j*Math.sin($),rt=Math.abs(tt)+Math.abs(et),nt=e[Z+"anchor"],it=e[Z+"shift"]*("x"===Z?1:-1),at=w[Z];if(Q){var ot=Q.r2fraction(e[Z]);if((t._dragging||!Q.autorange)&&(ot<0||ot>1)&&(K===J?((ot=Q.r2fraction(e["a"+Z]))<0||ot>1)&&(U=!0):U=!0,U))continue;H=Q._offset+Q.r2p(e[Z]),W=.5}else"x"===Z?(Y=e[Z],H=b.l+b.w*Y):(Y=1-e[Z],H=b.t+b.h*Y),W=e.showarrow?.5:Y;if(e.showarrow){at.head=H;var st=e["a"+Z];X=tt*B(.5,e.xanchor)-et*B(.5,e.yanchor),K===J?(at.tail=Q._offset+Q.r2p(st),G=X):(at.tail=H+st,G=X+st),at.text=at.tail+X;var lt=y["x"===Z?"width":"height"];if("paper"===J&&(at.head=o.constrain(at.head,1,lt-1)),"pixel"===K){var ct=-Math.max(at.tail-3,at.text),ut=Math.min(at.tail+3,at.text)-lt;ct>0?(at.tail+=ct,at.text+=ct):ut>0&&(at.tail-=ut,at.text-=ut)}at.tail+=it,at.head+=it}else G=X=rt*B(W,nt),at.text=H+X;at.text+=it,X+=it,G+=it,e["_"+Z+"padplus"]=rt/2+G,e["_"+Z+"padminus"]=rt/2-G,e["_"+Z+"size"]=rt,e["_"+Z+"shift"]=X}if(U)S.remove();else{var ft=0,ht=0;if("left"!==e.align&&(ft=(I-E)*("center"===e.align?.5:1)),"top"!==e.valign&&(ht=(N-C)*("middle"===e.valign?.5:1)),u)n.select("svg").attr({x:P+ft-1,y:P+ht}).call(c.setClipUrl,O?_:null);else{var dt=P+ht-v.top,pt=P+ft-v.left;R.call(f.positionText,pt,dt).call(c.setClipUrl,O?_:null)}D.select("rect").call(c.setRect,P,P,I,N),z.call(c.setRect,L/2,L/2,F-L,j-L),S.call(c.setTranslate,Math.round(w.x.text-F/2),Math.round(w.y.text-j/2)),A.attr({transform:"rotate("+M+","+w.x.text+","+w.y.text+")"});var mt,vt,gt=function(r,n){k.selectAll(".annotation-arrow-g").remove();var u=w.x.head,f=w.y.head,h=w.x.tail+r,v=w.y.tail+n,y=w.x.text+r,_=w.y.text+n,T=o.rotationXYMatrix(M,y,_),E=o.apply2DTransform(T),L=o.apply2DTransform2(T),C=+z.attr("width"),P=+z.attr("height"),O=y-.5*C,D=O+C,I=_-.5*P,R=I+P,N=[[O,I,O,R],[O,R,D,R],[D,R,D,I],[D,I,O,I]].map(L);if(!N.reduce(function(t,e){return t^!!o.segmentsIntersect(u,f,u+1e6,f+1e6,e[0],e[1],e[2],e[3])},!1)){N.forEach(function(t){var e=o.segmentsIntersect(h,v,u,f,t[0],t[1],t[2],t[3]);e&&(h=e.x,v=e.y)});var F=e.arrowwidth,j=e.arrowcolor,B=e.arrowside,U=k.append("g").style({opacity:l.opacity(j)}).classed("annotation-arrow-g",!0),V=U.append("path").attr("d","M"+h+","+v+"L"+u+","+f).style("stroke-width",F+"px").call(l.stroke,l.rgb(j));if(p(V,B,e),x.annotationPosition&&V.node().parentNode&&!a){var q=u,H=f;if(e.standoff){var G=Math.sqrt(Math.pow(u-h,2)+Math.pow(f-v,2));q+=e.standoff*(h-u)/G,H+=e.standoff*(v-f)/G}var Y,W,X,Z=U.append("path").classed("annotation-arrow",!0).classed("anndrag",!0).attr({d:"M3,3H-3V-3H3ZM0,0L"+(h-q)+","+(v-H),transform:"translate("+q+","+H+")"}).style("stroke-width",F+6+"px").call(l.stroke,"rgba(0,0,0,0)").call(l.fill,"rgba(0,0,0,0)");d.init({element:Z.node(),gd:t,prepFn:function(){var t=c.getTranslate(S);W=t.x,X=t.y,Y={},s&&s.autorange&&(Y[s._name+".autorange"]=!0),m&&m.autorange&&(Y[m._name+".autorange"]=!0)},moveFn:function(t,r){var n=E(W,X),i=n[0]+t,a=n[1]+r;S.call(c.setTranslate,i,a),Y[g+".x"]=s?s.p2r(s.r2p(e.x)+t):e.x+t/b.w,Y[g+".y"]=m?m.p2r(m.r2p(e.y)+r):e.y-r/b.h,e.axref===e.xref&&(Y[g+".ax"]=s.p2r(s.r2p(e.ax)+t)),e.ayref===e.yref&&(Y[g+".ay"]=m.p2r(m.r2p(e.ay)+r)),U.attr("transform","translate("+t+","+r+")"),A.attr({transform:"rotate("+M+","+i+","+a+")"})},doneFn:function(){i.relayout(t,Y);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}};if(e.showarrow&&gt(0,0),T)d.init({element:S.node(),gd:t,prepFn:function(){vt=A.attr("transform"),mt={}},moveFn:function(t,r){var n="pointer";if(e.showarrow)e.axref===e.xref?mt[g+".ax"]=s.p2r(s.r2p(e.ax)+t):mt[g+".ax"]=e.ax+t,e.ayref===e.yref?mt[g+".ay"]=m.p2r(m.r2p(e.ay)+r):mt[g+".ay"]=e.ay+r,gt(t,r);else{if(a)return;if(s)mt[g+".x"]=e.x+t/s._m;else{var i=e._xsize/b.w,o=e.x+(e._xshift-e.xshift)/b.w-i/2;mt[g+".x"]=d.align(o+t/b.w,i,0,1,e.xanchor)}if(m)mt[g+".y"]=e.y+r/m._m;else{var l=e._ysize/b.h,c=e.y-(e._yshift+e.yshift)/b.h-l/2;mt[g+".y"]=d.align(c-r/b.h,l,0,1,e.yanchor)}s&&m||(n=d.getCursor(s?.5:mt[g+".x"],m?.5:mt[g+".y"],e.xanchor,e.yanchor))}A.attr({transform:"translate("+t+","+r+")"+vt}),h(S,n)},doneFn:function(){h(S),i.relayout(t,mt);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}}e.exports={draw:function(t){var e=t._fullLayout;e._infolayer.selectAll(".annotation").remove();for(var r=0;r<e.annotations.length;r++)e.annotations[r].visible&&m(t,r);return a.previousPromises(t)},drawOne:m,drawRaw:v}},{"../../lib":724,"../../lib/setcursor":743,"../../lib/svg_text_utils":747,"../../plotly":765,"../../plots/cartesian/axes":770,"../../plots/plots":833,"../color":598,"../dragelement":620,"../drawing":623,"../fx":640,"./draw_arrow_head":588,d3:128}],588:[function(t,e,r){"use strict";var n=t("d3"),i=t("../color"),a=t("./arrow_paths");e.exports=function(t,e,r){var o,s,l,c,u=t.node(),f=a[r.arrowhead||0],h=a[r.startarrowhead||0],d=(r.arrowwidth||1)*(r.arrowsize||1),p=(r.arrowwidth||1)*(r.startarrowsize||1),m=e.indexOf("start")>=0,v=e.indexOf("end")>=0,g=f.backoff*d+r.standoff,y=h.backoff*p+r.startstandoff;if("line"===u.nodeName){o={x:+t.attr("x1"),y:+t.attr("y1")},s={x:+t.attr("x2"),y:+t.attr("y2")};var b=o.x-s.x,x=o.y-s.y;if(c=(l=Math.atan2(x,b))+Math.PI,g&&y&&g+y>Math.sqrt(b*b+x*x))return void 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mt={fullLayout:u,container:u._hoverlayer,outerContainer:u._paperdiv,event:e},vt=t._spikepoints,gt={vLinePoint:K.vLinePoint,hLinePoint:K.hLinePoint};if(t._spikepoints=gt,u._has("cartesian")&&0!==X&&0!==Z.length){var yt=Z.filter(function(t){return t.ya.showspikes}),bt=dt(yt,X);K.hLinePoint=pt(bt);var xt=Z.filter(function(t){return t.xa.showspikes}),_t=dt(xt,X);K.vLinePoint=pt(_t)}if(0===Z.length){var wt=h.unhoverRaw(t,e);return!u._has("cartesian")||null===K.hLinePoint&&null===K.vLinePoint||S(vt)&&E(K,mt),wt}u._has("cartesian")&&S(vt)&&E(K,mt);Z.sort(function(t,e){return t.distance-e.distance});var Mt=t._hoverdata,kt=[];for(R=0;R<Z.length;R++){var At=Z[R];kt.push(m.makeEventData(At,At.trace,At.cd))}t._hoverdata=kt;var Tt="y"===O&&J.length>1,Et=f.combine(u.plot_bgcolor||f.background,u.paper_bgcolor),St={hovermode:O,rotateLabels:Tt,bgColor:Et,container:u._hoverlayer,outerContainer:u._paperdiv,commonLabelOpts:u.hoverlabel,hoverdistance:u.hoverdistance},Lt=k(Z,St,t);if(function(t,e,r){var n,i,a,o,s,l,c,u=0,f=t.map(function(t,n){var i=t[e];return[{i:n,dp:0,pos:t.pos,posref:t.posref,size:t.by*("x"===i._id.charAt(0)?b:1)/2,pmin:0,pmax:"x"===i._id.charAt(0)?r.width:r.height}]}).sort(function(t,e){return t[0].posref-e[0].posref});function h(t){var e=t[0],r=t[t.length-1];if(i=e.pmin-e.pos-e.dp+e.size,a=r.pos+r.dp+r.size-e.pmax,i>.01){for(s=t.length-1;s>=0;s--)t[s].dp+=i;n=!1}if(!(a<.01)){if(i<-.01){for(s=t.length-1;s>=0;s--)t[s].dp-=a;n=!1}if(n){var c=0;for(o=0;o<t.length;o++)(l=t[o]).pos+l.dp+l.size>e.pmax&&c++;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos>e.pmax-1&&(l.del=!0,c--);for(o=0;o<t.length&&!(c<=0);o++)if((l=t[o]).pos<e.pmin+1)for(l.del=!0,c--,a=2*l.size,s=t.length-1;s>=0;s--)t[s].dp-=a;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos+l.dp+l.size>e.pmax&&(l.del=!0,c--)}}}for(;!n&&u<=t.length;){for(u++,n=!0,o=0;o<f.length-1;){var 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i=r[n],a=t._hoverdata[n];if(i.curveNumber!==a.curveNumber||String(i.pointNumber)!==String(a.pointNumber))return!0}return!1}(t,0,Mt))return;Mt&&t.emit("plotly_unhover",{event:e,points:Mt});t.emit("plotly_hover",{event:e,points:t._hoverdata,xaxes:_,yaxes:w,xvals:D,yvals:I})}(t,e,r,a)})},r.loneHover=function(t,e){var r={color:t.color||f.defaultLine,x0:t.x0||t.x||0,x1:t.x1||t.x||0,y0:t.y0||t.y||0,y1:t.y1||t.y||0,xLabel:t.xLabel,yLabel:t.yLabel,zLabel:t.zLabel,text:t.text,name:t.name,idealAlign:t.idealAlign,borderColor:t.borderColor,fontFamily:t.fontFamily,fontSize:t.fontSize,fontColor:t.fontColor,trace:{index:0,hoverinfo:""},xa:{_offset:0},ya:{_offset:0},index:0},i=n.select(e.container),a=e.outerContainer?n.select(e.outerContainer):i,o={hovermode:"closest",rotateLabels:!1,bgColor:e.bgColor||f.background,container:i,outerContainer:a,hoverdistance:v.MAXDIST},s=k([r],o,e.gd);return A(s,o.rotateLabels),s.node()}},{"../../lib":724,"../../lib/events":712,"../../lib/override_cursor":735,"../../lib/svg_text_utils":747,"../../plots/cartesian/axes":770,"../../registry":854,"../color":598,"../dragelement":620,"../drawing":623,"./constants":635,"./helpers":637,d3:128,"fast-isnumeric":140,tinycolor2:526}],639:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e,r,i){r("hoverlabel.bgcolor",(i=i||{}).bgcolor),r("hoverlabel.bordercolor",i.bordercolor),r("hoverlabel.namelength",i.namelength),n.coerceFont(r,"hoverlabel.font",i.font)}},{"../../lib":724}],640:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../dragelement"),o=t("./helpers"),s=t("./layout_attributes");e.exports={moduleType:"component",name:"fx",constants:t("./constants"),schema:{layout:s},attributes:t("./attributes"),layoutAttributes:s,supplyLayoutGlobalDefaults:t("./layout_global_defaults"),supplyDefaults:t("./defaults"),supplyLayoutDefaults:t("./layout_defaults"),calc:t("./calc"),getDistanceFunction:o.getDistanceFunction,getClosest:o.getClosest,inbox:o.inbox,quadrature:o.quadrature,appendArrayPointValue:o.appendArrayPointValue,castHoverOption:function(t,e,r){return i.castOption(t,e,"hoverlabel."+r)},castHoverinfo:function(t,e,r){return i.castOption(t,r,"hoverinfo",function(r){return i.coerceHoverinfo({hoverinfo:r},{_module:t._module},e)})},hover:t("./hover").hover,unhover:a.unhover,loneHover:t("./hover").loneHover,loneUnhover:function(t){var e=i.isD3Selection(t)?t:n.select(t);e.selectAll("g.hovertext").remove(),e.selectAll(".spikeline").remove()},click:t("./click")}},{"../../lib":724,"../dragelement":620,"./attributes":632,"./calc":633,"./click":634,"./constants":635,"./defaults":636,"./helpers":637,"./hover":638,"./layout_attributes":641,"./layout_defaults":642,"./layout_global_defaults":643,d3:128}],641:[function(t,e,r){"use strict";var n=t("./constants"),i=t("../../plots/font_attributes")({editType:"none"});i.family.dflt=n.HOVERFONT,i.size.dflt=n.HOVERFONTSIZE,e.exports={dragmode:{valType:"enumerated",values:["zoom","pan","select","lasso","orbit","turntable"],dflt:"zoom",editType:"modebar"},hovermode:{valType:"enumerated",values:["x","y","closest",!1],editType:"modebar"},hoverdistance:{valType:"integer",min:-1,dflt:20,editType:"none"},spikedistance:{valType:"integer",min:-1,dflt:20,editType:"none"},hoverlabel:{bgcolor:{valType:"color",editType:"none"},bordercolor:{valType:"color",editType:"none"},font:i,namelength:{valType:"integer",min:-1,dflt:15,editType:"none"},editType:"none"}}},{"../../plots/font_attributes":797,"./constants":635}],642:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}var o;a("dragmode"),e._has("cartesian")?(e._isHoriz=function(t){for(var e=!0,r=0;r<t.length;r++){var 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p=a.selectAll("rect."+d.grabAreaMaxClassName).data([0]);p.enter().append("rect").classed(d.grabAreaMaxClassName,!0).attr(f),p.attr("height",n._height)}}e.exports=function(t){var e=t._fullLayout,r=function(t){var e=u.list({_fullLayout:t},"x",!0),r=d.name,n=[];if(t._has("gl2d"))return n;for(var i=0;i<e.length;i++){var a=e[i];a[r]&&a[r].visible&&n.push(a)}return n}(e);var s=e._infolayer.selectAll("g."+d.containerClassName).data(r,function(t){return t._name});s.enter().append("g").classed(d.containerClassName,!0).attr("pointer-events","all"),s.exit().each(function(t){var r=n.select(this),i=t[d.name];r.remove(),e._topdefs.select("#"+i._clipId).remove()}),s.exit().size()&&function(t){for(var e=t._fullLayout._pushmargin||{},r=Object.keys(e),n=0;n<r.length;n++){var i=r[n];-1!==i.indexOf(d.name)&&a.autoMargin(t,i)}}(t),0!==r.length&&s.each(function(r){var s=n.select(this),l=r[d.name],c=e[u.id2name(r.anchor)];if(l.range){var x=l.range,_=r.range;x[0]=r.l2r(Math.min(r.r2l(x[0]),r.r2l(_[0]))),x[1]=r.l2r(Math.max(r.r2l(x[1]),r.r2l(_[1]))),l._input.range=x.slice()}r.cleanRange("rangeslider.range");var w=e.margin,M=e._size,k=r.domain,A=c.domain,T=(r._boundingBox||{}).height||0;l._id=d.name+r._id,l._clipId=l._id+"-"+e._uid,l._width=M.w*(k[1]-k[0]),l._height=(e.height-w.b-w.t)*l.thickness,l._offsetShift=Math.floor(l.borderwidth/2);var E=Math.round(w.l+M.w*k[0]),S=Math.round(w.t+M.h*(1-A[0])+T+l._offsetShift+d.extraPad);s.attr("transform","translate("+E+","+S+")");var L=r.r2l(l.range[0]),C=r.r2l(l.range[1]),P=C-L;l.p2d=function(t){return t/l._width*P+L},l.d2p=function(t){return(t-L)/P*l._width},l._rl=[L,C],s.call(p,t,r,l).call(m,t,r,l).call(v,t,r,l).call(g,t,r,l).call(y,t,r,l).call(b,t,r,l),function(t,e,r,a){var s=t.select("rect."+d.slideBoxClassName).node(),l=t.select("rect."+d.grabAreaMinClassName).node(),c=t.select("rect."+d.grabAreaMaxClassName).node();t.on("mousedown",function(){var u=n.event,d=u.target,p=u.clientX,m=p-t.node().getBoundingClientRect().left,v=a.d2p(r._rl[0]),g=a.d2p(r._rl[1]),y=f.coverSlip();function b(t){var u,f,b,x=+t.clientX-p;switch(d){case s:b="ew-resize",u=v+x,f=g+x;break;case l:b="col-resize",u=v+x,f=g;break;case c:b="col-resize",u=v,f=g+x;break;default:b="ew-resize",u=m,f=m+x}if(f<u){var _=f;f=u,u=_}a._pixelMin=u,a._pixelMax=f,h(n.select(y),b),function(t,e,r,n){function a(t){return r.l2r(o.constrain(t,n._rl[0],n._rl[1]))}var s=a(n.p2d(n._pixelMin)),l=a(n.p2d(n._pixelMax));window.requestAnimationFrame(function(){i.relayout(e,r._name+".range",[s,l])})}(0,e,r,a)}y.addEventListener("mousemove",b),y.addEventListener("mouseup",function t(){y.removeEventListener("mousemove",b);y.removeEventListener("mouseup",t);o.removeElement(y)})})}(s,t,r,l),function(t,e,r,n){var i=d.handleWidth/2;function a(t){return o.constrain(t,0,n._width)}function s(t){return o.constrain(t,-i,n._width+i)}var 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n=t("../annotations/attributes"),i=t("../../traces/scatter/attributes").line,a=t("../drawing/attributes").dash,o=t("../../lib/extend").extendFlat;e.exports={_isLinkedToArray:"shape",visible:{valType:"boolean",dflt:!0,editType:"calcIfAutorange+arraydraw"},type:{valType:"enumerated",values:["circle","rect","path","line"],editType:"calcIfAutorange+arraydraw"},layer:{valType:"enumerated",values:["below","above"],dflt:"above",editType:"arraydraw"},xref:o({},n.xref,{}),x0:{valType:"any",editType:"calcIfAutorange+arraydraw"},x1:{valType:"any",editType:"calcIfAutorange+arraydraw"},yref:o({},n.yref,{}),y0:{valType:"any",editType:"calcIfAutorange+arraydraw"},y1:{valType:"any",editType:"calcIfAutorange+arraydraw"},path:{valType:"string",editType:"calcIfAutorange+arraydraw"},opacity:{valType:"number",min:0,max:1,dflt:1,editType:"arraydraw"},line:{color:o({},i.color,{editType:"arraydraw"}),width:o({},i.width,{editType:"calcIfAutorange+arraydraw"}),dash:o({},a,{editType:"arraydraw"}),editType:"calcIfAutorange+arraydraw"},fillcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"arraydraw"},editType:"arraydraw"}},{"../../lib/extend":713,"../../traces/scatter/attributes":1048,"../annotations/attributes":581,"../drawing/attributes":622}],677:[function(t,e,r){"use 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o,s,u,h,m,v,g,y,b,x,_,w,M,k,A,T,E,S,L,C,P,z,O,D,I,R,N,F,j,B,U=10,V=10,q={element:e.node(),gd:t,prepFn:function(e){D=a.getFromId(t,r.xref),I=a.getFromId(t,r.yref),R=f.getDataToPixel(t,D),N=f.getDataToPixel(t,I,!0),F=f.getPixelToData(t,D),j=f.getPixelToData(t,I,!0);var n="shapes["+i+"]";"path"===r.type?(z=r.path,O=n+".path"):(s=R(r.x0),u=N(r.y0),h=R(r.x1),m=N(r.y1),v=n+".x0",g=n+".y0",y=n+".x1",b=n+".y1");s<h?(w=s,T=n+".x0",C="x0",M=h,E=n+".x1",P="x1"):(w=h,T=n+".x1",C="x1",M=s,E=n+".x0",P="x0");u<m?(x=u,k=n+".y0",S="y0",_=m,A=n+".y1",L="y1"):(x=m,k=n+".y1",S="y1",_=u,A=n+".y0",L="y0");o={},G(e),q.moveFn="move"===B?Y:W},doneFn:function(){c(e),n.relayout(t,o)}},H=q.element.getBoundingClientRect();function G(t){var r=H.right-H.left,n=H.bottom-H.top,i=t.clientX-H.left,a=t.clientY-H.top,o=r>U&&n>V&&!t.shiftKey?l.getCursor(i/r,1-a/n):"move";c(e,o),B=o.split("-")[0]}function Y(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var l=function(t){return j(N(t)+i)};I&&"date"===I.type&&(l=f.encodeDate(l)),r.path=p(z,a,l),o[O]=r.path}else o[v]=r.x0=F(s+n),o[g]=r.y0=j(u+i),o[y]=r.x1=F(h+n),o[b]=r.y1=j(m+i);e.attr("d",d(t,r))}function W(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var s=function(t){return j(N(t)+i)};I&&"date"===I.type&&(s=f.encodeDate(s)),r.path=p(z,a,s),o[O]=r.path}else{var l=~B.indexOf("n")?x+i:x,c=~B.indexOf("s")?_+i:_,u=~B.indexOf("w")?w+n:w,h=~B.indexOf("e")?M+n:M;c-l>V&&(o[k]=r[S]=j(l),o[A]=r[L]=j(c)),h-u>U&&(o[T]=r[C]=F(u),o[E]=r[P]=F(h))}e.attr("d",d(t,r))}l.init(q),e.node().onmousemove=G}(t,m,i,e)}}function d(t,e){var r,n,o,s,l=e.type,c=a.getFromId(t,e.xref),h=a.getFromId(t,e.yref),d=t._fullLayout._size;if(c?(r=f.shapePositionToRange(c),n=function(t){return c._offset+c.r2p(r(t,!0))}):n=function(t){return d.l+d.w*t},h?(o=f.shapePositionToRange(h),s=function(t){return h._offset+h.r2p(o(t,!0))}):s=function(t){return d.t+d.h*(1-t)},"path"===l)return c&&"date"===c.type&&(n=f.decodeDate(n)),h&&"date"===h.type&&(s=f.decodeDate(s)),function(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,a=t.charAt(0),o=u.paramIsX[a],s=u.paramIsY[a],l=u.numParams[a],c=t.substr(1).replace(u.paramRE,function(t){return o[n]?t=e(t):s[n]&&(t=r(t)),++n>l&&(t="X"),t});return n>l&&(c=c.replace(/[\s,]*X.*/,""),i.log("Ignoring extra params in segment "+t)),a+c})}(e.path,n,s);var p=n(e.x0),m=n(e.x1),v=s(e.y0),g=s(e.y1);if("line"===l)return"M"+p+","+v+"L"+m+","+g;if("rect"===l)return"M"+p+","+v+"H"+m+"V"+g+"H"+p+"Z";var y=(p+m)/2,b=(v+g)/2,x=Math.abs(y-p),_=Math.abs(b-v),w="A"+x+","+_,M=y+x+","+b;return"M"+M+w+" 0 1,1 "+(y+","+(b-_))+w+" 0 0,1 "+M+"Z"}function p(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,i=t.charAt(0),a=u.paramIsX[i],o=u.paramIsY[i],s=u.numParams[i];return i+t.substr(1).replace(u.paramRE,function(t){return n>=s?t:(a[n]?t=e(t):o[n]&&(t=r(t)),n++,t)})})}e.exports={draw:function(t){var e=t._fullLayout;e._shapeUpperLayer.selectAll("path").remove(),e._shapeLowerLayer.selectAll("path").remove(),e._shapeSubplotLayers.selectAll("path").remove();for(var r=0;r<e.shapes.length;r++)e.shapes[r].visible&&h(t,r)},drawOne:h}},{"../../lib":724,"../../lib/setcursor":743,"../../plotly":765,"../../plots/cartesian/axes":770,"../color":598,"../dragelement":620,"../drawing":623,"./constants":678,"./helpers":681}],681:[function(t,e,r){"use strict";r.rangeToShapePosition=function(t){return"log"===t.type?t.r2d:function(t){return t}},r.shapePositionToRange=function(t){return"log"===t.type?t.d2r:function(t){return t}},r.decodeDate=function(t){return function(e){return e.replace&&(e=e.replace("_"," ")),t(e)}},r.encodeDate=function(t){return function(e){return t(e).replace(" ","_")}},r.getDataToPixel=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.shapePositionToRange(e);i=function(t){return e._offset+e.r2p(o(t,!0))},"date"===e.type&&(i=r.decodeDate(i))}else i=n?function(t){return a.t+a.h*(1-t)}:function(t){return a.l+a.w*t};return i},r.getPixelToData=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.rangeToShapePosition(e);i=function(t){return o(e.p2r(t-e._offset))}}else i=n?function(t){return 1-(t-a.t)/a.h}:function(t){return(t-a.l)/a.w};return i}},{}],682:[function(t,e,r){"use strict";var n=t("./draw");e.exports={moduleType:"component",name:"shapes",layoutAttributes:t("./attributes"),supplyLayoutDefaults:t("./defaults"),includeBasePlot:t("../../plots/cartesian/include_components")("shapes"),calcAutorange:t("./calc_autorange"),draw:n.draw,drawOne:n.drawOne}},{"../../plots/cartesian/include_components":780,"./attributes":676,"./calc_autorange":677,"./defaults":679,"./draw":680}],683:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../plots/cartesian/axes"),a=t("./attributes"),o=t("./helpers");e.exports=function(t,e,r,s,l){function c(r,i){return n.coerce(t,e,a,r,i)}if(s=s||{},!c("visible",!(l=l||{}).itemIsNotPlainObject))return 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n=t("../../plots/font_attributes"),i=t("../../plots/pad_attributes"),a=t("../../lib/extend").extendDeepAll,o=t("../../plot_api/edit_types").overrideAll,s=t("../../plots/animation_attributes"),l=t("./constants");e.exports=o({_isLinkedToArray:"slider",visible:{valType:"boolean",dflt:!0},active:{valType:"number",min:0,dflt:0},steps:{_isLinkedToArray:"step",method:{valType:"enumerated",values:["restyle","relayout","animate","update","skip"],dflt:"restyle"},args:{valType:"info_array",freeLength:!0,items:[{valType:"any"},{valType:"any"},{valType:"any"}]},label:{valType:"string"},value:{valType:"string"},execute:{valType:"boolean",dflt:!0}},lenmode:{valType:"enumerated",values:["fraction","pixels"],dflt:"fraction"},len:{valType:"number",min:0,dflt:1},x:{valType:"number",min:-2,max:3,dflt:0},pad:a({},i,{},{t:{dflt:20}}),xanchor:{valType:"enumerated",values:["auto","left","center","right"],dflt:"left"},y:{valType:"number",min:-2,max:3,dflt:0},yanchor:{valType:"enumerated",values:["auto","top","middle","bottom"],dflt:"top"},transition:{duration:{valType:"number",min:0,dflt:150},easing:{valType:"enumerated",values:s.transition.easing.values,dflt:"cubic-in-out"}},currentvalue:{visible:{valType:"boolean",dflt:!0},xanchor:{valType:"enumerated",values:["left","center","right"],dflt:"left"},offset:{valType:"number",dflt:10},prefix:{valType:"string"},suffix:{valType:"string"},font:n({})},font:n({}),activebgcolor:{valType:"color",dflt:l.gripBgActiveColor},bgcolor:{valType:"color",dflt:l.railBgColor},bordercolor:{valType:"color",dflt:l.railBorderColor},borderwidth:{valType:"number",min:0,dflt:l.railBorderWidth},ticklen:{valType:"number",min:0,dflt:l.tickLength},tickcolor:{valType:"color",dflt:l.tickColor},tickwidth:{valType:"number",min:0,dflt:1},minorticklen:{valType:"number",min:0,dflt:l.minorTickLength}},"arraydraw","from-root")},{"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/animation_attributes":766,"../../plots/font_attributes":797,"../../plots/pad_attributes":832,"./constants":685}],685:[function(t,e,r){"use 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s=e/n;this.vbar.call(a.setTranslate,t,e+s*this._vbarTranslateMax)}}},{"../../lib":724,"../color":598,"../drawing":623,d3:128}],696:[function(t,e,r){"use strict";e.exports={FROM_BL:{left:0,center:.5,right:1,bottom:0,middle:.5,top:1},FROM_TL:{left:0,center:.5,right:1,bottom:1,middle:.5,top:0},FROM_BR:{left:1,center:.5,right:0,bottom:0,middle:.5,top:1},LINE_SPACING:1.3,MID_SHIFT:.35,OPPOSITE_SIDE:{left:"right",right:"left",top:"bottom",bottom:"top"}}},{}],697:[function(t,e,r){"use strict";e.exports={COMPARISON_OPS:["=","!=","<",">=",">","<="],COMPARISON_OPS2:["=","<",">=",">","<="],INTERVAL_OPS:["[]","()","[)","(]","][",")(","](",")["],SET_OPS:["{}","}{"],CONSTRAINT_REDUCTION:{"=":"=","<":"<","<=":"<",">":">",">=":">","[]":"[]","()":"[]","[)":"[]","(]":"[]","][":"][",")(":"][","](":"][",")[":"]["}}},{}],698:[function(t,e,r){"use strict";e.exports={solid:[1],dot:[1,1],dash:[4,1],longdash:[8,1],dashdot:[4,1,1,1],longdashdot:[8,1,1,1]}},{}],699:[function(t,e,r){"use 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x<=_?[a,y,r[2]]:[v,b,r[2]]}(M,r,S);isFinite(k[0])&&isFinite(k[1])&&isFinite(k[2])||(k=S),e.rotate(k),S=k}}else r=p(e,T=x);h.of(this,arguments)({type:"zoom"})}),A=h.of(this,arguments),d++||A({type:"zoomstart"})}).on("zoomend",function(){var r;n.select(this).style(l),v.call(f,"zoom",null),r=h.of(this,arguments),--d||r({type:"zoomend"}),u(t,e,b)}).on("zoom.redraw",function(){t.render()}),n.rebind(f,h,"on")}function p(t,e){var r=t.invert(e);return r&&isFinite(r[0])&&isFinite(r[1])&&function(t){var e=t[0]*a,r=t[1]*a,n=Math.cos(r);return[n*Math.cos(e),n*Math.sin(e),Math.sin(r)]}(r)}function m(t,e,r,n){var i=v(r-t),a=v(n-e);return Math.sqrt(i*i+a*a)}function v(t){return(t%360+540)%360-180}function g(t,e,r){var n=r*a,i=t.slice(),o=0===e?1:0,s=2===e?1:2,l=Math.cos(n),c=Math.sin(n);return i[o]=t[o]*l-t[s]*c,i[s]=t[s]*l+t[o]*c,i}function y(t,e){for(var r=0,n=0,i=t.length;n<i;++n)r+=t[n]*e[n];return r}e.exports=function(t,e){var r=t.projection;return(e._isScoped?f:e._isClipped?d:h)(t,r)}},{"../../lib":724,d3:128}],807:[function(t,e,r){"use strict";var n=t("../registry"),i=t("./cartesian/constants").SUBPLOT_PATTERN;r.getSubplotCalcData=function(t,e,r){var i=n.subplotsRegistry[e];if(!i)return[];for(var a=i.attr,o=[],s=0;s<t.length;s++){var l=t[s];l[0].trace[a]===r&&o.push(l)}return o},r.getModuleCalcData=function(t,e){var r=[],i="string"==typeof e?n.getModule(e):e;if(!i)return r;for(var a=0;a<t.length;a++){var o=t[a],s=o[0].trace;s._module===i&&!0===s.visible&&r.push(o)}return r},r.getSubplotData=function(t,e,r){if(!n.subplotsRegistry[e])return[];var a,o,s,l=n.subplotsRegistry[e].attr,c=[];if("gl2d"===e){var u=r.match(i);o="x"+u[1],s="y"+u[2]}for(var f=0;f<t.length;f++)a=t[f],"gl2d"===e&&n.traceIs(a,"gl2d")?a[l[0]]===o&&a[l[1]]===s&&c.push(a):a[l]===r&&c.push(a);return c}},{"../registry":854,"./cartesian/constants":775}],808:[function(t,e,r){"use strict";var n=t("mouse-change"),i=t("mouse-wheel"),a=t("mouse-event-offset"),o=t("../cartesian/constants"),s=t("has-passive-events");e.exports=function(t){var e=t.mouseContainer,r=t.glplot,l=new function(t,e){this.element=t,this.plot=e,this.mouseListener=null,this.wheelListener=null,this.lastInputTime=Date.now(),this.lastPos=[0,0],this.boxEnabled=!1,this.boxInited=!1,this.boxStart=[0,0],this.boxEnd=[0,0],this.dragStart=[0,0]}(e,r);function c(){t.xaxis.autorange=!1,t.yaxis.autorange=!1}function u(e,n,i){var a,s,u=t.calcDataBox(),f=r.viewBox,h=l.lastPos[0],d=l.lastPos[1],p=o.MINDRAG*r.pixelRatio,m=o.MINZOOM*r.pixelRatio;function v(e,r,n){var i=Math.min(r,n),a=Math.max(r,n);i!==a?(u[e]=i,u[e+2]=a,l.dataBox=u,t.setRanges(u)):(t.selectBox.selectBox=[0,0,1,1],t.glplot.setDirty())}switch(n*=r.pixelRatio,i*=r.pixelRatio,i=f[3]-f[1]-i,t.fullLayout.dragmode){case"zoom":if(e){var g=n/(f[2]-f[0])*(u[2]-u[0])+u[0],y=i/(f[3]-f[1])*(u[3]-u[1])+u[1];l.boxInited||(l.boxStart[0]=g,l.boxStart[1]=y,l.dragStart[0]=n,l.dragStart[1]=i),l.boxEnd[0]=g,l.boxEnd[1]=y,l.boxInited=!0,l.boxEnabled||l.boxStart[0]===l.boxEnd[0]&&l.boxStart[1]===l.boxEnd[1]||(l.boxEnabled=!0);var b=Math.abs(l.dragStart[0]-n)<m,x=Math.abs(l.dragStart[1]-i)<m;if(!function(){for(var e=t.graphDiv._fullLayout._axisConstraintGroups,r=t.xaxis._id,n=t.yaxis._id,i=0;i<e.length;i++)if(-1!==e[i][r]){if(-1!==e[i][n])return!0;break}return!1}()||b&&x)b&&(l.boxEnd[0]=l.boxStart[0]),x&&(l.boxEnd[1]=l.boxStart[1]);else{a=l.boxEnd[0]-l.boxStart[0],s=l.boxEnd[1]-l.boxStart[1];var _=(u[3]-u[1])/(u[2]-u[0]);Math.abs(a*_)>Math.abs(s)?(l.boxEnd[1]=l.boxStart[1]+Math.abs(a)*_*(s>=0?1:-1),l.boxEnd[1]<u[1]?(l.boxEnd[1]=u[1],l.boxEnd[0]=l.boxStart[0]+(u[1]-l.boxStart[1])/Math.abs(_)):l.boxEnd[1]>u[3]&&(l.boxEnd[1]=u[3],l.boxEnd[0]=l.boxStart[0]+(u[3]-l.boxStart[1])/Math.abs(_))):(l.boxEnd[0]=l.boxStart[0]+Math.abs(s)/_*(a>=0?1:-1),l.boxEnd[0]<u[0]?(l.boxEnd[0]=u[0],l.boxEnd[1]=l.boxStart[1]+(u[0]-l.boxStart[0])*Math.abs(_)):l.boxEnd[0]>u[2]&&(l.boxEnd[0]=u[2],l.boxEnd[1]=l.boxStart[1]+(u[2]-l.boxStart[0])*Math.abs(_)))}}else l.boxEnabled?(a=l.boxStart[0]!==l.boxEnd[0],s=l.boxStart[1]!==l.boxEnd[1],a||s?(a&&(v(0,l.boxStart[0],l.boxEnd[0]),t.xaxis.autorange=!1),s&&(v(1,l.boxStart[1],l.boxEnd[1]),t.yaxis.autorange=!1),t.relayoutCallback()):t.glplot.setDirty(),l.boxEnabled=!1,l.boxInited=!1):l.boxInited&&(l.boxInited=!1);break;case"pan":l.boxEnabled=!1,l.boxInited=!1,e?(l.panning||(l.dragStart[0]=n,l.dragStart[1]=i),Math.abs(l.dragStart[0]-n)<p&&(n=l.dragStart[0]),Math.abs(l.dragStart[1]-i)<p&&(i=l.dragStart[1]),a=(h-n)*(u[2]-u[0])/(r.viewBox[2]-r.viewBox[0]),s=(d-i)*(u[3]-u[1])/(r.viewBox[3]-r.viewBox[1]),u[0]+=a,u[2]+=a,u[1]+=s,u[3]+=s,t.setRanges(u),l.panning=!0,l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations()):l.panning&&(l.panning=!1,t.relayoutCallback())}l.lastPos[0]=n,l.lastPos[1]=i}return l.mouseListener=n(e,u),e.addEventListener("touchstart",function(t){var r=a(t.changedTouches[0],e);u(0,r[0],r[1]),u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchmove",function(t){t.preventDefault();var r=a(t.changedTouches[0],e);u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchend",function(t){u(0,l.lastPos[0],l.lastPos[1]),t.preventDefault()},!!s&&{passive:!1}),l.wheelListener=i(e,function(e,n){if(!t.scrollZoom)return!1;var i=t.calcDataBox(),a=r.viewBox,o=l.lastPos[0],s=l.lastPos[1],u=Math.exp(5*n/(a[3]-a[1])),f=o/(a[2]-a[0])*(i[2]-i[0])+i[0],h=s/(a[3]-a[1])*(i[3]-i[1])+i[1];return i[0]=(i[0]-f)*u+f,i[2]=(i[2]-f)*u+f,i[1]=(i[1]-h)*u+h,i[3]=(i[3]-h)*u+h,t.setRanges(i),l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations(),t.relayoutCallback(),!0},!0),l}},{"../cartesian/constants":775,"has-passive-events":256,"mouse-change":424,"mouse-event-offset":425,"mouse-wheel":427}],809:[function(t,e,r){"use strict";var n=t("../cartesian/axes"),i=t("../../lib/html2unicode"),a=t("../../lib/str2rgbarray");function o(t){this.scene=t,this.gl=t.gl,this.pixelRatio=t.pixelRatio,this.screenBox=[0,0,1,1],this.viewBox=[0,0,1,1],this.dataBox=[-1,-1,1,1],this.borderLineEnable=[!1,!1,!1,!1],this.borderLineWidth=[1,1,1,1],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.ticks=[[],[]],this.tickEnable=[!0,!0,!1,!1],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labels=["x","y"],this.labelEnable=[!0,!0,!1,!1],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelPad=[15,15,15,15],this.labelSize=[12,12],this.labelFont=["sans-serif","sans-serif"],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.title="",this.titleEnable=!0,this.titleCenter=[0,0,0,0],this.titleAngle=0,this.titleColor=[0,0,0,1],this.titleFont="sans-serif",this.titleSize=18,this.gridLineEnable=[!0,!0],this.gridLineColor=[[0,0,0,.5],[0,0,0,.5]],this.gridLineWidth=[1,1],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[1,1],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderColor=!1,this.backgroundColor=[0,0,0,0],this.static=this.scene.staticPlot}var s=o.prototype,l=["xaxis","yaxis"];s.merge=function(t){var e,r,n,o,s,c,u,f,h,d,p;for(this.titleEnable=!1,this.backgroundColor=a(t.plot_bgcolor),d=0;d<2;++d){var m=(e=l[d]).charAt(0);for(n=(r=t[this.scene[e]._name]).title===this.scene.fullLayout._dfltTitle[m]?"":r.title,p=0;p<=2;p+=2)this.labelEnable[d+p]=!1,this.labels[d+p]=i(n),this.labelColor[d+p]=a(r.titlefont.color),this.labelFont[d+p]=r.titlefont.family,this.labelSize[d+p]=r.titlefont.size,this.labelPad[d+p]=this.getLabelPad(e,r),this.tickEnable[d+p]=!1,this.tickColor[d+p]=a((r.tickfont||{}).color),this.tickAngle[d+p]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180,this.tickPad[d+p]=this.getTickPad(r),this.tickMarkLength[d+p]=0,this.tickMarkWidth[d+p]=r.tickwidth||0,this.tickMarkColor[d+p]=a(r.tickcolor),this.borderLineEnable[d+p]=!1,this.borderLineColor[d+p]=a(r.linecolor),this.borderLineWidth[d+p]=r.linewidth||0;u=this.hasSharedAxis(r),s=this.hasAxisInDfltPos(e,r)&&!u,c=this.hasAxisInAltrPos(e,r)&&!u,o=r.mirror||!1,f=u?-1!==String(o).indexOf("all"):!!o,h=u?"allticks"===o:-1!==String(o).indexOf("ticks"),s?this.labelEnable[d]=!0:c&&(this.labelEnable[d+2]=!0),s?this.tickEnable[d]=r.showticklabels:c&&(this.tickEnable[d+2]=r.showticklabels),(s||f)&&(this.borderLineEnable[d]=r.showline),(c||f)&&(this.borderLineEnable[d+2]=r.showline),(s||h)&&(this.tickMarkLength[d]=this.getTickMarkLength(r)),(c||h)&&(this.tickMarkLength[d+2]=this.getTickMarkLength(r)),this.gridLineEnable[d]=r.showgrid,this.gridLineColor[d]=a(r.gridcolor),this.gridLineWidth[d]=r.gridwidth,this.zeroLineEnable[d]=r.zeroline,this.zeroLineColor[d]=a(r.zerolinecolor),this.zeroLineWidth[d]=r.zerolinewidth}},s.hasSharedAxis=function(t){var e=this.scene,r=e.fullLayout._subplots.gl2d;return 0!==n.findSubplotsWithAxis(r,t).indexOf(e.id)},s.hasAxisInDfltPos=function(t,e){var r=e.side;return"xaxis"===t?"bottom"===r:"yaxis"===t?"left"===r:void 0},s.hasAxisInAltrPos=function(t,e){var r=e.side;return"xaxis"===t?"top"===r:"yaxis"===t?"right"===r:void 0},s.getLabelPad=function(t,e){var r=e.titlefont.size,n=e.showticklabels;return"xaxis"===t?"top"===e.side?r*(1.5+(n?1:0))-10:r*(1.5+(n?.5:0))-10:"yaxis"===t?"right"===e.side?10+r*(1.5+(n?1:.5)):10+r*(1.5+(n?.5:0)):void 0},s.getTickPad=function(t){return"outside"===t.ticks?10+t.ticklen:15},s.getTickMarkLength=function(t){if(!t.ticks)return 0;var e=t.ticklen;return"inside"===t.ticks?-e:e},e.exports=function(t){return new o(t)}},{"../../lib/html2unicode":722,"../../lib/str2rgbarray":746,"../cartesian/axes":770}],810:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("./scene2d"),a=t("../layout_attributes"),o=t("../../constants/xmlns_namespaces"),s=t("../cartesian/constants"),l=t("../cartesian"),c=t("../../components/fx/layout_attributes"),u=t("../get_data").getSubplotData;r.name="gl2d",r.attr=["xaxis","yaxis"],r.idRoot=["x","y"],r.idRegex=s.idRegex,r.attrRegex=s.attrRegex,r.attributes=t("../cartesian/attributes"),r.supplyLayoutDefaults=function(t,e,r){e._has("cartesian")||l.supplyLayoutDefaults(t,e,r)},r.layoutAttrOverrides=n(l.layoutAttributes,"plot","from-root"),r.baseLayoutAttrOverrides=n({plot_bgcolor:a.plot_bgcolor,hoverlabel:c.hoverlabel},"plot","nested"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl2d,a=0;a<n.length;a++){var o=n[a],s=e._plots[o],l=u(r,"gl2d",o),c=s._scene2d;void 0===c&&(c=new i({id:o,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),s._scene2d=c),c.plot(l,t.calcdata,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl2d||[],a=0;a<i.length;a++){var o=i[a],s=n._plots[o];if(s._scene2d)0===u(t,"gl2d",o).length&&(s._scene2d.destroy(),delete n._plots[o])}l.clean.apply(this,arguments)},r.drawFramework=function(t){t._context.staticPlot||l.drawFramework(t)},r.toSVG=function(t){for(var e=t._fullLayout,r=e._subplots.gl2d,n=0;n<r.length;n++){var i=e._plots[r[n]]._scene2d,a=i.toImage("png");e._glimages.append("svg:image").attr({xmlns:o.svg,"xlink:href":a,x:0,y:0,width:"100%",height:"100%",preserveAspectRatio:"none"}),i.destroy()}},r.updateFx=function(t){for(var e=t._subplots.gl2d,r=0;r<e.length;r++){t._plots[e[r]]._scene2d.updateFx(t.dragmode)}}},{"../../components/fx/layout_attributes":641,"../../constants/xmlns_namespaces":704,"../../plot_api/edit_types":754,"../cartesian":781,"../cartesian/attributes":769,"../cartesian/constants":775,"../get_data":807,"../layout_attributes":824,"./scene2d":811}],811:[function(t,e,r){"use strict";var n,i,a=t("../../registry"),o=t("../../plots/cartesian/axes"),s=t("../../components/fx"),l=t("gl-plot2d"),c=t("gl-spikes2d"),u=t("gl-select-box"),f=t("webgl-context"),h=t("./convert"),d=t("./camera"),p=t("../../lib/html2unicode"),m=t("../../lib/show_no_webgl_msg"),v=t("../cartesian/constraints"),g=v.enforce,y=v.clean,b=["xaxis","yaxis"],x=t("../cartesian/constants").SUBPLOT_PATTERN;function _(t,e){this.container=t.container,this.graphDiv=t.graphDiv,this.pixelRatio=t.plotGlPixelRatio||window.devicePixelRatio,this.id=t.id,this.staticPlot=!!t.staticPlot,this.scrollZoom=this.graphDiv._context.scrollZoom,this.fullData=null,this.updateRefs(e),this.makeFramework(),this.glplotOptions=h(this),this.glplotOptions.merge(e),this.glplot=l(this.glplotOptions),this.camera=d(this),this.traces={},this.spikes=c(this.glplot),this.selectBox=u(this.glplot,{innerFill:!1,outerFill:!0}),this.lastButtonState=0,this.pickResult=null,this.isMouseOver=!0,this.bounds=[1/0,1/0,-1/0,-1/0],this.stopped=!1,this.redraw=this.draw.bind(this),this.redraw()}e.exports=_;var w=_.prototype;w.makeFramework=function(){if(this.staticPlot){if(!(i||(n=document.createElement("canvas"),i=f({canvas:n,preserveDrawingBuffer:!1,premultipliedAlpha:!0,antialias:!0}))))throw new Error("Error creating static canvas/context for image server");this.canvas=n,this.gl=i}else{var t=this.container.querySelector(".gl-canvas-focus"),e=f({canvas:t,preserveDrawingBuffer:!0,premultipliedAlpha:!0});e||m(this),this.canvas=t,this.gl=e}var r=this.canvas;r.style.width="100%",r.style.height="100%",r.style.position="absolute",r.style.top="0px",r.style.left="0px",r.style["pointer-events"]="none",this.updateSize(r),r.className+=" user-select-none";var a=this.svgContainer=document.createElementNS("http://www.w3.org/2000/svg","svg");a.style.position="absolute",a.style.top=a.style.left="0px",a.style.width=a.style.height="100%",a.style["z-index"]=20,a.style["pointer-events"]="none";var o=this.mouseContainer=document.createElement("div");o.style.position="absolute",o.style["pointer-events"]="auto",this.pickCanvas=this.container.querySelector(".gl-canvas-pick");var s=this.container;s.appendChild(a),s.appendChild(o);var l=this;o.addEventListener("mouseout",function(){l.isMouseOver=!1,l.unhover()}),o.addEventListener("mouseover",function(){l.isMouseOver=!0})},w.toImage=function(t){t||(t="png"),this.stopped=!0,this.staticPlot&&this.container.appendChild(n),this.updateSize(this.canvas);var e=this.glplot.gl,r=e.drawingBufferWidth,i=e.drawingBufferHeight;e.clearColor(1,1,1,0),e.clear(e.COLOR_BUFFER_BIT|e.DEPTH_BUFFER_BIT),this.glplot.setDirty(),this.glplot.draw(),e.bindFramebuffer(e.FRAMEBUFFER,null);var a=new Uint8Array(r*i*4);e.readPixels(0,0,r,i,e.RGBA,e.UNSIGNED_BYTE,a);for(var o=0,s=i-1;o<s;++o,--s)for(var l=0;l<r;++l)for(var c=0;c<4;++c){var u=a[4*(r*o+l)+c];a[4*(r*o+l)+c]=a[4*(r*s+l)+c],a[4*(r*s+l)+c]=u}var f=document.createElement("canvas");f.width=r,f.height=i;var h,d=f.getContext("2d"),p=d.createImageData(r,i);switch(p.data.set(a),d.putImageData(p,0,0),t){case"jpeg":h=f.toDataURL("image/jpeg");break;case"webp":h=f.toDataURL("image/webp");break;default:h=f.toDataURL("image/png")}return 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i={lastInputTime:this.camera.lastInputTime};i[e._name]=e.range.slice(0),i[r._name]=r.range.slice(0),t.emit("plotly_relayout",i)},w.cameraChanged=function(){var t=this.camera;this.glplot.setDataBox(this.calcDataBox());var e=this.computeTickMarks();(function(t,e){for(var r=0;r<2;++r){var n=t[r],i=e[r];if(n.length!==i.length)return!0;for(var a=0;a<n.length;++a)if(n[a].x!==i[a].x)return!0}return!1})(e,this.glplotOptions.ticks)&&(this.glplotOptions.ticks=e,this.glplotOptions.dataBox=t.dataBox,this.glplot.update(this.glplotOptions),this.handleAnnotations())},w.handleAnnotations=function(){for(var t=this.graphDiv,e=this.fullLayout.annotations,r=0;r<e.length;r++){var n=e[r];n.xref===this.xaxis._id&&n.yref===this.yaxis._id&&a.getComponentMethod("annotations","drawOne")(t,r)}},w.destroy=function(){if(this.glplot){var t=this.traces;t&&Object.keys(t).map(function(e){t[e].dispose(),delete 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e=this.xaxis,r=this.yaxis,n=e.l2r,i=r.l2r;e.range=[n(t[0]),n(t[2])],r.range=[i(t[1]),i(t[3])]},w.updateTraces=function(t,e){var r,n,i,a=Object.keys(this.traces);this.fullData=t;t:for(r=0;r<a.length;r++){var o=a[r],s=this.traces[o];for(n=0;n<t.length;n++)if((i=t[n]).uid===o&&i.type===s.type)continue t;s.dispose(),delete this.traces[o]}for(r=0;r<t.length;r++){i=t[r];var l=e[r],c=this.traces[i.uid];c?c.update(i,l):(c=i._module.plot(this,i,l),this.traces[i.uid]=c)}this.glplot.objects.sort(function(t,e){return t._trace.index-e._trace.index})},w.updateFx=function(t){"lasso"===t||"select"===t?(this.pickCanvas.style["pointer-events"]="none",this.mouseContainer.style["pointer-events"]="none"):(this.pickCanvas.style["pointer-events"]="auto",this.mouseContainer.style["pointer-events"]="auto"),this.mouseContainer.style.cursor="pan"===t?"move":"zoom"===t?"crosshair":null},w.emitPointAction=function(t,e){for(var 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v=this.fullData[m.trace.index]||{},g=m.pointIndex,y=s.castHoverinfo(v,i,g);if(y&&"all"!==y){var b=y.split("+");-1===b.indexOf("x")&&(m.traceCoord[0]=void 0),-1===b.indexOf("y")&&(m.traceCoord[1]=void 0),-1===b.indexOf("z")&&(m.traceCoord[2]=void 0),-1===b.indexOf("text")&&(m.textLabel=void 0),-1===b.indexOf("name")&&(m.name=void 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n=t("../../plot_api/edit_types").overrideAll,i=t("../../components/fx/layout_attributes"),a=t("./scene"),o=t("../get_data").getSubplotData,s=t("../../lib"),l=t("../../constants/xmlns_namespaces");r.name="gl3d",r.attr="scene",r.idRoot="scene",r.idRegex=r.attrRegex=s.counterRegex("scene"),r.attributes=t("./layout/attributes"),r.layoutAttributes=t("./layout/layout_attributes"),r.baseLayoutAttrOverrides=n({hoverlabel:i.hoverlabel},"plot","nested"),r.supplyLayoutDefaults=t("./layout/defaults"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl3d,i=0;i<n.length;i++){var l=n[i],c=o(r,"gl3d",l),u=e[l],f=u._scene;f||(f=new a({id:l,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),u._scene=f),f.cameraInitial||(f.cameraInitial=s.extendDeep({},u.camera)),f.plot(c,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl3d||[],a=0;a<i.length;a++){var 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d=l[h];c=t[d]||{},u=e[d]={_id:d[0]+r.scene,_name:d},o(c,u,f,r.data),s(c,u,f,{font:r.font,letter:d[0],data:r.data,showGrid:!0,bgColor:r.bgColor,calendar:r.calendar},r.fullLayout),f("gridcolor",n(u.color,r.bgColor,13600/187).toRgbString()),f("title",d[0]),u.setScale=i.noop,f("showspikes")&&(f("spikesides"),f("spikethickness"),f("spikecolor",u.color)),f("showaxeslabels"),f("showbackground")&&f("backgroundcolor")}}},{"../../../lib":724,"../../cartesian/axis_defaults":772,"../../cartesian/type_defaults":794,"./axis_attributes":815,tinycolor2:526}],817:[function(t,e,r){"use strict";var n=t("../../../lib/html2unicode"),i=t("../../../lib/str2rgbarray"),a=["xaxis","yaxis","zaxis"];function o(){this.bounds=[[-10,-10,-10],[10,10,10]],this.ticks=[[],[],[]],this.tickEnable=[!0,!0,!0],this.tickFont=["sans-serif","sans-serif","sans-serif"],this.tickSize=[12,12,12],this.tickAngle=[0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[18,18,18],this.labels=["x","y","z"],this.labelEnable=[!0,!0,!0],this.labelFont=["Open Sans","Open Sans","Open Sans"],this.labelSize=[20,20,20],this.labelAngle=[0,0,0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[30,30,30],this.lineEnable=[!0,!0,!0],this.lineMirror=[!1,!1,!1],this.lineWidth=[1,1,1],this.lineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.lineTickEnable=[!0,!0,!0],this.lineTickMirror=[!1,!1,!1],this.lineTickLength=[10,10,10],this.lineTickWidth=[1,1,1],this.lineTickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.gridEnable=[!0,!0,!0],this.gridWidth=[1,1,1],this.gridColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroEnable=[!0,!0,!0],this.zeroLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroLineWidth=[2,2,2],this.backgroundEnable=[!0,!0,!0],this.backgroundColor=[[.8,.8,.8,.5],[.8,.8,.8,.5],[.8,.8,.8,.5]],this._defaultTickPad=this.tickPad.slice(),this._defaultLabelPad=this.labelPad.slice(),this._defaultLineTickLength=this.lineTickLength.slice()}o.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[a[e]];r.visible?(this.labels[e]=n(r.title),"titlefont"in r&&(r.titlefont.color&&(this.labelColor[e]=i(r.titlefont.color)),r.titlefont.family&&(this.labelFont[e]=r.titlefont.family),r.titlefont.size&&(this.labelSize[e]=r.titlefont.size)),"showline"in r&&(this.lineEnable[e]=r.showline),"linecolor"in r&&(this.lineColor[e]=i(r.linecolor)),"linewidth"in r&&(this.lineWidth[e]=r.linewidth),"showgrid"in r&&(this.gridEnable[e]=r.showgrid),"gridcolor"in r&&(this.gridColor[e]=i(r.gridcolor)),"gridwidth"in r&&(this.gridWidth[e]=r.gridwidth),"log"===r.type?this.zeroEnable[e]=!1:"zeroline"in r&&(this.zeroEnable[e]=r.zeroline),"zerolinecolor"in r&&(this.zeroLineColor[e]=i(r.zerolinecolor)),"zerolinewidth"in r&&(this.zeroLineWidth[e]=r.zerolinewidth),"ticks"in r&&r.ticks?this.lineTickEnable[e]=!0:this.lineTickEnable[e]=!1,"ticklen"in r&&(this.lineTickLength[e]=this._defaultLineTickLength[e]=r.ticklen),"tickcolor"in r&&(this.lineTickColor[e]=i(r.tickcolor)),"tickwidth"in r&&(this.lineTickWidth[e]=r.tickwidth),"tickangle"in r&&(this.tickAngle[e]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180),"showticklabels"in r&&(this.tickEnable[e]=r.showticklabels),"tickfont"in r&&(r.tickfont.color&&(this.tickColor[e]=i(r.tickfont.color)),r.tickfont.family&&(this.tickFont[e]=r.tickfont.family),r.tickfont.size&&(this.tickSize[e]=r.tickfont.size)),"mirror"in r?-1!==["ticks","all","allticks"].indexOf(r.mirror)?(this.lineTickMirror[e]=!0,this.lineMirror[e]=!0):!0===r.mirror?(this.lineTickMirror[e]=!1,this.lineMirror[e]=!0):(this.lineTickMirror[e]=!1,this.lineMirror[e]=!1):this.lineMirror[e]=!1,"showbackground"in r&&!1!==r.showbackground?(this.backgroundEnable[e]=!0,this.backgroundColor[e]=i(r.backgroundcolor)):this.backgroundEnable[e]=!1):(this.tickEnable[e]=!1,this.labelEnable[e]=!1,this.lineEnable[e]=!1,this.lineTickEnable[e]=!1,this.gridEnable[e]=!1,this.zeroEnable[e]=!1,this.backgroundEnable[e]=!1)}},e.exports=function(t){var e=new o;return e.merge(t),e}},{"../../../lib/html2unicode":722,"../../../lib/str2rgbarray":746}],818:[function(t,e,r){"use strict";var n=t("../../../lib"),i=t("../../../components/color"),a=t("../../../registry"),o=t("../../subplot_defaults"),s=t("./axis_defaults"),l=t("./layout_attributes");function c(t,e,r,n){for(var o=r("bgcolor"),l=i.combine(o,n.paper_bgcolor),c=["up","center","eye"],u=0;u<c.length;u++)r("camera."+c[u]+".x"),r("camera."+c[u]+".y"),r("camera."+c[u]+".z");var f=!!r("aspectratio.x")&&!!r("aspectratio.y")&&!!r("aspectratio.z"),h=r("aspectmode",f?"manual":"auto");f||(t.aspectratio=e.aspectratio={x:1,y:1,z:1},"manual"===h&&(e.aspectmode="auto"),t.aspectmode=e.aspectmode),s(t,e,{font:n.font,scene:n.id,data:n.fullData,bgColor:l,calendar:n.calendar,fullLayout:n.fullLayout}),a.getComponentMethod("annotations3d","handleDefaults")(t,e,n),r("dragmode",n.getDfltFromLayout("dragmode")),r("hovermode",n.getDfltFromLayout("hovermode"))}e.exports=function(t,e,r){var i=e._basePlotModules.length>1;o(t,e,r,{type:"gl3d",attributes:l,handleDefaults:c,fullLayout:e,font:e.font,fullData:r,getDfltFromLayout:function(e){if(!i)return n.validate(t[e],l[e])?t[e]:void 0},paper_bgcolor:e.paper_bgcolor,calendar:e.calendar})}},{"../../../components/color":598,"../../../lib":724,"../../../registry":854,"../../subplot_defaults":846,"./axis_defaults":816,"./layout_attributes":819}],819:[function(t,e,r){"use strict";var n=t("./axis_attributes"),i=t("../../domain_attributes"),a=t("../../../lib/extend").extendFlat,o=t("../../../lib").counterRegex;function s(t,e,r){return{x:{valType:"number",dflt:t,editType:"camera"},y:{valType:"number",dflt:e,editType:"camera"},z:{valType:"number",dflt:r,editType:"camera"},editType:"camera"}}e.exports={_arrayAttrRegexps:[o("scene",".annotations",!0)],bgcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"plot"},camera:{up:a(s(0,0,1),{}),center:a(s(0,0,0),{}),eye:a(s(1.25,1.25,1.25),{}),editType:"camera"},domain:i({name:"scene",editType:"plot"}),aspectmode:{valType:"enumerated",values:["auto","cube","data","manual"],dflt:"auto",editType:"plot",impliedEdits:{"aspectratio.x":void 0,"aspectratio.y":void 0,"aspectratio.z":void 0}},aspectratio:{x:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},y:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},z:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},editType:"plot",impliedEdits:{aspectmode:"manual"}},xaxis:n,yaxis:n,zaxis:n,dragmode:{valType:"enumerated",values:["orbit","turntable","zoom","pan",!1],dflt:"turntable",editType:"plot"},hovermode:{valType:"enumerated",values:["closest",!1],dflt:"closest",editType:"modebar"},editType:"plot",_deprecated:{cameraposition:{valType:"info_array",editType:"camera"}}}},{"../../../lib":724,"../../../lib/extend":713,"../../domain_attributes":796,"./axis_attributes":815}],820:[function(t,e,r){"use strict";var n=t("../../../lib/str2rgbarray"),i=["xaxis","yaxis","zaxis"];function a(){this.enabled=[!0,!0,!0],this.colors=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.drawSides=[!0,!0,!0],this.lineWidth=[1,1,1]}a.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[i[e]];r.visible?(this.enabled[e]=r.showspikes,this.colors[e]=n(r.spikecolor),this.drawSides[e]=r.spikesides,this.lineWidth[e]=r.spikethickness):(this.enabled[e]=!1,this.drawSides[e]=!1)}},e.exports=function(t){var e=new a;return e.merge(t),e}},{"../../../lib/str2rgbarray":746}],821:[function(t,e,r){"use strict";e.exports=function(t){for(var e=t.axesOptions,r=t.glplot.axesPixels,l=t.fullSceneLayout,c=[[],[],[]],u=0;u<3;++u){var f=l[o[u]];if(f._length=(r[u].hi-r[u].lo)*r[u].pixelsPerDataUnit/t.dataScale[u],Math.abs(f._length)===1/0)c[u]=[];else{f._input_range=f.range.slice(),f.range[0]=r[u].lo/t.dataScale[u],f.range[1]=r[u].hi/t.dataScale[u],f._m=1/(t.dataScale[u]*r[u].pixelsPerDataUnit),f.range[0]===f.range[1]&&(f.range[0]-=1,f.range[1]+=1);var h=f.tickmode;if("auto"===f.tickmode){f.tickmode="linear";var d=f.nticks||i.constrain(f._length/40,4,9);n.autoTicks(f,Math.abs(f.range[1]-f.range[0])/d)}for(var p=n.calcTicks(f),m=0;m<p.length;++m)p[m].x=p[m].x*t.dataScale[u],p[m].text=a(p[m].text);c[u]=p,f.tickmode=h}}e.ticks=c;for(var u=0;u<3;++u){s[u]=.5*(t.glplot.bounds[0][u]+t.glplot.bounds[1][u]);for(var m=0;m<2;++m)e.bounds[m][u]=t.glplot.bounds[m][u]}t.contourLevels=function(t){for(var e=new Array(3),r=0;r<3;++r){for(var n=t[r],i=new Array(n.length),a=0;a<n.length;++a)i[a]=n[a].x;e[r]=i}return e}(c)};var n=t("../../cartesian/axes"),i=t("../../../lib"),a=t("../../../lib/html2unicode"),o=["xaxis","yaxis","zaxis"],s=[0,0,0]},{"../../../lib":724,"../../../lib/html2unicode":722,"../../cartesian/axes":770}],822:[function(t,e,r){"use strict";function n(t,e){var r,n,i=[0,0,0,0];for(r=0;r<4;++r)for(n=0;n<4;++n)i[n]+=t[4*r+n]*e[r];return i}e.exports=function(t,e){return n(t.projection,n(t.view,n(t.model,[e[0],e[1],e[2],1])))}},{}],823:[function(t,e,r){"use strict";var n,i,a=t("gl-plot3d"),o=t("webgl-context"),s=t("has-passive-events"),l=t("../../registry"),c=t("../../lib"),u=t("../../plots/cartesian/axes"),f=t("../../components/fx"),h=t("../../lib/str2rgbarray"),d=t("../../lib/show_no_webgl_msg"),p=t("./camera"),m=t("./project"),v=t("./layout/convert"),g=t("./layout/spikes"),y=t("./layout/tick_marks");function b(t,e,r,l){var h={canvas:r,gl:l,container:t.container,axes:t.axesOptions,spikes:t.spikeOptions,pickRadius:10,snapToData:!0,autoScale:!0,autoBounds:!1};if(t.staticMode){if(!(i||(n=document.createElement("canvas"),i=o({canvas:n,preserveDrawingBuffer:!0,premultipliedAlpha:!0,antialias:!0}))))throw new Error("error creating static canvas/context for image server");h.pixelRatio=t.pixelRatio,h.gl=i,h.canvas=n}try{t.glplot=a(h)}catch(e){d(t)}var v=function(t){if(!1!==t.fullSceneLayout.dragmode){var e={};e[t.id+".camera"]=A(t.camera),t.saveCamera(t.graphDiv.layout),t.graphDiv.emit("plotly_relayout",e)}};if(t.glplot.canvas.addEventListener("mouseup",v.bind(null,t)),t.glplot.canvas.addEventListener("wheel",v.bind(null,t),!!s&&{passive:!1}),t.staticMode||t.glplot.canvas.addEventListener("webglcontextlost",function(t){c.warn("Lost WebGL context."),t.preventDefault()}),!t.camera){var g=t.fullSceneLayout.camera;t.camera=p(t.container,{center:[g.center.x,g.center.y,g.center.z],eye:[g.eye.x,g.eye.y,g.eye.z],up:[g.up.x,g.up.y,g.up.z],zoomMin:.1,zoomMax:100,mode:"orbit"})}return t.glplot.camera=t.camera,t.glplot.oncontextloss=function(){t.recoverContext()},t.glplot.onrender=function(t){var e,r=t.svgContainer,n=t.container.getBoundingClientRect(),i=n.width,a=n.height;r.setAttributeNS(null,"viewBox","0 0 "+i+" "+a),r.setAttributeNS(null,"width",i),r.setAttributeNS(null,"height",a),y(t),t.glplot.axes.update(t.axesOptions);for(var o,s=Object.keys(t.traces),l=null,c=t.glplot.selection,h=0;h<s.length;++h)"skip"!==(e=t.traces[s[h]]).data.hoverinfo&&e.handlePick(c)&&(l=e),e.setContourLevels&&e.setContourLevels();function d(e,r){var n=t.fullSceneLayout[e];return u.tickText(n,n.d2l(r),"hover").text}if(null!==l){var p=m(t.glplot.cameraParams,c.dataCoordinate);e=l.data;var v=c.index,g=f.castHoverinfo(e,t.fullLayout,v),b=d("xaxis",c.traceCoordinate[0]),x=d("yaxis",c.traceCoordinate[1]),_=d("zaxis",c.traceCoordinate[2]);if("all"!==g){var w=g.split("+");-1===w.indexOf("x")&&(b=void 0),-1===w.indexOf("y")&&(x=void 0),-1===w.indexOf("z")&&(_=void 0),-1===w.indexOf("text")&&(c.textLabel=void 0),-1===w.indexOf("name")&&(l.name=void 0)}t.fullSceneLayout.hovermode&&f.loneHover({x:(.5+.5*p[0]/p[3])*i,y:(.5-.5*p[1]/p[3])*a,xLabel:b,yLabel:x,zLabel:_,text:c.textLabel,name:l.name,color:f.castHoverOption(e,v,"bgcolor")||l.color,borderColor:f.castHoverOption(e,v,"bordercolor"),fontFamily:f.castHoverOption(e,v,"font.family"),fontSize:f.castHoverOption(e,v,"font.size"),fontColor:f.castHoverOption(e,v,"font.color")},{container:r,gd:t.graphDiv});var M={x:c.traceCoordinate[0],y:c.traceCoordinate[1],z:c.traceCoordinate[2],data:e._input,fullData:e,curveNumber:e.index,pointNumber:v};f.appendArrayPointValue(M,e,v);var k={points:[M]};c.buttons&&c.distance<5?t.graphDiv.emit("plotly_click",k):t.graphDiv.emit("plotly_hover",k),o=k}else f.loneUnhover(r),t.graphDiv.emit("plotly_unhover",o);t.drawAnnotations(t)}.bind(null,t),t.traces={},!0}function x(t,e){var r=document.createElement("div"),n=t.container;this.graphDiv=t.graphDiv;var i=document.createElementNS("http://www.w3.org/2000/svg","svg");i.style.position="absolute",i.style.top=i.style.left="0px",i.style.width=i.style.height="100%",i.style["z-index"]=20,i.style["pointer-events"]="none",r.appendChild(i),this.svgContainer=i,r.id=t.id,r.style.position="absolute",r.style.top=r.style.left="0px",r.style.width=r.style.height="100%",n.appendChild(r),this.fullLayout=e,this.id=t.id||"scene",this.fullSceneLayout=e[this.id],this.plotArgs=[[],{},{}],this.axesOptions=v(e[this.id]),this.spikeOptions=g(e[this.id]),this.container=r,this.staticMode=!!t.staticPlot,this.pixelRatio=t.plotGlPixelRatio||2,this.dataScale=[1,1,1],this.contourLevels=[[],[],[]],this.convertAnnotations=l.getComponentMethod("annotations3d","convert"),this.drawAnnotations=l.getComponentMethod("annotations3d","draw"),b(this)}var _=x.prototype;_.recoverContext=function(){var t=this,e=this.glplot.gl,r=this.glplot.canvas;this.glplot.dispose(),requestAnimationFrame(function n(){e.isContextLost()?requestAnimationFrame(n):b(t,t.fullLayout,r,e)?t.plot.apply(t,t.plotArgs):c.error("Catastrophic and unrecoverable WebGL error. Context lost.")})};var w=["xaxis","yaxis","zaxis"];function M(t,e,r,n,i,a){var o;if(!Array.isArray(e))return i[0][n]=Math.min(i[0][n],0),void(i[1][n]=Math.max(i[1][n],r-1));for(var s=0;s<(r||e.length);++s)if(Array.isArray(e[s]))for(var l=0;l<e[s].length;++l)o=t.d2l(e[s][l],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o));else o=t.d2l(e[s],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o))}function k(t,e,r){var n=t.fullSceneLayout;M(n.xaxis,e.x,e._xlength,0,r,e.xcalendar),M(n.yaxis,e.y,e._ylength,1,r,e.ycalendar),M(n.zaxis,e.z,e._zlength,2,r,e.zcalendar)}function A(t){return{up:{x:t.up[0],y:t.up[1],z:t.up[2]},center:{x:t.center[0],y:t.center[1],z:t.center[2]},eye:{x:t.eye[0],y:t.eye[1],z:t.eye[2]}}}_.plot=function(t,e,r){if(this.plotArgs=[t,e,r],!this.glplot.contextLost){var n,i,a,o,s,l,c=e[this.id],u=r[this.id];c.bgcolor?this.glplot.clearColor=h(c.bgcolor):this.glplot.clearColor=[0,0,0,0],this.glplot.snapToData=!0,this.fullLayout=e,this.fullSceneLayout=c,this.glplotLayout=c,this.axesOptions.merge(c),this.spikeOptions.merge(c),this.setCamera(c.camera),this.updateFx(c.dragmode,c.hovermode),this.glplot.update({}),this.setConvert(s),t?Array.isArray(t)||(t=[t]):t=[];var f=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(a=0;a<t.length;++a)!0===(n=t[a]).visible&&k(this,n,f);var d=[1,1,1];for(o=0;o<3;++o)f[0][o]>f[1][o]?d[o]=1:f[1][o]===f[0][o]?d[o]=1:d[o]=1/(f[1][o]-f[0][o]);for(this.dataScale=d,this.convertAnnotations(this),a=0;a<t.length;++a)!0===(n=t[a]).visible&&((i=this.traces[n.uid])?i.update(n):(i=n._module.plot(this,n),this.traces[n.uid]=i),i.name=n.name);var p=Object.keys(this.traces);t:for(a=0;a<p.length;++a){for(o=0;o<t.length;++o)if(t[o].uid===p[a]&&!0===t[o].visible)continue t;(i=this.traces[p[a]]).dispose(),delete this.traces[p[a]]}this.glplot.objects.sort(function(t,e){return t._trace.data.index-e._trace.data.index});var m=[[0,0,0],[0,0,0]],v=[],g={};for(a=0;a<3;++a){if((l=(s=c[w[a]]).type)in g?(g[l].acc*=d[a],g[l].count+=1):g[l]={acc:d[a],count:1},s.autorange){m[0][a]=1/0,m[1][a]=-1/0;var y=this.glplot.objects,b=this.fullSceneLayout.annotations||[],x=s._name.charAt(0);for(o=0;o<y.length;o++){var _=y[o].bounds;m[0][a]=Math.min(m[0][a],_[0][a]/d[a]),m[1][a]=Math.max(m[1][a],_[1][a]/d[a])}for(o=0;o<b.length;o++){var M=b[o];if(M.visible){var A=s.r2l(M[x]);m[0][a]=Math.min(m[0][a],A),m[1][a]=Math.max(m[1][a],A)}}if("rangemode"in s&&"tozero"===s.rangemode&&(m[0][a]=Math.min(m[0][a],0),m[1][a]=Math.max(m[1][a],0)),m[0][a]>m[1][a])m[0][a]=-1,m[1][a]=1;else{var T=m[1][a]-m[0][a];m[0][a]-=T/32,m[1][a]+=T/32}}else{var E=s.range;m[0][a]=s.r2l(E[0]),m[1][a]=s.r2l(E[1])}m[0][a]===m[1][a]&&(m[0][a]-=1,m[1][a]+=1),v[a]=m[1][a]-m[0][a],this.glplot.bounds[0][a]=m[0][a]*d[a],this.glplot.bounds[1][a]=m[1][a]*d[a]}var S=[1,1,1];for(a=0;a<3;++a){var L=g[l=(s=c[w[a]]).type];S[a]=Math.pow(L.acc,1/L.count)/d[a]}var C;if("auto"===c.aspectmode)C=Math.max.apply(null,S)/Math.min.apply(null,S)<=4?S:[1,1,1];else if("cube"===c.aspectmode)C=[1,1,1];else if("data"===c.aspectmode)C=S;else{if("manual"!==c.aspectmode)throw new Error("scene.js aspectRatio was not one of the enumerated types");var P=c.aspectratio;C=[P.x,P.y,P.z]}c.aspectratio.x=u.aspectratio.x=C[0],c.aspectratio.y=u.aspectratio.y=C[1],c.aspectratio.z=u.aspectratio.z=C[2],this.glplot.aspect=C;var z=c.domain||null,O=e._size||null;if(z&&O){var D=this.container.style;D.position="absolute",D.left=O.l+z.x[0]*O.w+"px",D.top=O.t+(1-z.y[1])*O.h+"px",D.width=O.w*(z.x[1]-z.x[0])+"px",D.height=O.h*(z.y[1]-z.y[0])+"px"}this.glplot.redraw()}},_.destroy=function(){this.glplot&&(this.camera.mouseListener.enabled=!1,this.container.removeEventListener("wheel",this.camera.wheelListener),this.camera=this.glplot.camera=null,this.glplot.dispose(),this.container.parentNode.removeChild(this.container),this.glplot=null)},_.getCamera=function(){return this.glplot.camera.view.recalcMatrix(this.camera.view.lastT()),A(this.glplot.camera)},_.setCamera=function(t){var e;this.glplot.camera.lookAt.apply(this,[[(e=t).eye.x,e.eye.y,e.eye.z],[e.center.x,e.center.y,e.center.z],[e.up.x,e.up.y,e.up.z]])},_.saveCamera=function(t){var e=this.getCamera(),r=c.nestedProperty(t,this.id+".camera"),n=r.get(),i=!1;function a(t,e,r,n){var i=["up","center","eye"],a=["x","y","z"];return e[i[r]]&&t[i[r]][a[n]]===e[i[r]][a[n]]}if(void 0===n)i=!0;else for(var 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e=t._subplots.mapbox,r=0;r<e.length;r++){t[e[r]]._subplot.updateFx(t)}}},{"../../constants/xmlns_namespaces":704,"../../lib":724,"../../plots/get_data":807,"./constants":825,"./layout_attributes":829,"./layout_defaults":830,"./mapbox":831,"mapbox-gl":315}],828:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./convert_text_opts");function a(t,e){this.mapbox=t,this.map=t.map,this.uid=t.uid+"-layer"+e,this.idSource=this.uid+"-source",this.idLayer=this.uid+"-layer",this.sourceType=null,this.source=null,this.layerType=null,this.below=null,this.visible=!1}var o=a.prototype;function s(t){var e=t.source;return n.isPlainObject(e)||"string"==typeof e&&e.length>0}o.update=function(t){this.visible?this.needsNewSource(t)?(this.updateLayer(t),this.updateSource(t)):this.needsNewLayer(t)&&this.updateLayer(t):(this.updateSource(t),this.updateLayer(t)),this.updateStyle(t),this.visible=s(t)},o.needsNewSource=function(t){return this.sourceType!==t.sourcetype||this.source!==t.source||this.layerType!==t.type},o.needsNewLayer=function(t){return this.layerType!==t.type||this.below!==t.below},o.updateSource=function(t){var e=this.map;if(e.getSource(this.idSource)&&e.removeSource(this.idSource),this.sourceType=t.sourcetype,this.source=t.source,s(t)){var r=function(t){var e,r=t.sourcetype,n=t.source,i={type:r};"geojson"===r?e="data":"vector"===r&&(e="string"==typeof n?"url":"tiles");return i[e]=n,i}(t);e.addSource(this.idSource,r)}},o.updateLayer=function(t){var e=this.map;if(e.getLayer(this.idLayer)&&e.removeLayer(this.idLayer),this.layerType=t.type,s(t)){e.addLayer({id:this.idLayer,source:this.idSource,"source-layer":t.sourcelayer||"",type:t.type},t.below);this.mapbox.setOptions(this.idLayer,"setLayoutProperty",{visibility:"visible"})}},o.updateStyle=function(t){var e=function(t){var e={},r={};switch(t.type){case"circle":n.extendFlat(r,{"circle-radius":t.circle.radius,"circle-color":t.color,"circle-opacity":t.opacity});break;case"line":n.extendFlat(r,{"line-width":t.line.width,"line-color":t.color,"line-opacity":t.opacity});break;case"fill":n.extendFlat(r,{"fill-color":t.color,"fill-outline-color":t.fill.outlinecolor,"fill-opacity":t.opacity});break;case"symbol":var a=t.symbol,o=i(a.textposition,a.iconsize);n.extendFlat(e,{"icon-image":a.icon+"-15","icon-size":a.iconsize/10,"text-field":a.text,"text-size":a.textfont.size,"text-anchor":o.anchor,"text-offset":o.offset}),n.extendFlat(r,{"icon-color":t.color,"text-color":a.textfont.color,"text-opacity":t.opacity})}return{layout:e,paint:r}}(t);s(t)&&(this.mapbox.setOptions(this.idLayer,"setLayoutProperty",e.layout),this.mapbox.setOptions(this.idLayer,"setPaintProperty",e.paint))},o.dispose=function(){var t=this.map;t.removeLayer(this.idLayer),t.removeSource(this.idSource)},e.exports=function(t,e,r){var n=new a(t,e);return n.update(r),n}},{"../../lib":724,"./convert_text_opts":826}],829:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/color").defaultLine,a=t("../domain_attributes"),o=t("../font_attributes"),s=t("../../traces/scatter/attributes").textposition,l=t("../../plot_api/edit_types").overrideAll,c=o({});c.family.dflt="Open Sans Regular, Arial Unicode MS 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n=t("mapbox-gl"),i=t("../../components/fx"),a=t("../../lib"),o=t("../../components/dragelement"),s=t("../cartesian/select"),l=t("./constants"),c=t("./layout_attributes"),u=t("./layers");function f(t){this.id=t.id,this.gd=t.gd,this.container=t.container,this.isStatic=t.staticPlot;var e=t.fullLayout;this.uid=e._uid+"-"+this.id,this.opts=e[this.id],this.div=null,this.xaxis=null,this.yaxis=null,this.createFramework(e),this.map=null,this.accessToken=null,this.styleObj=null,this.traceHash={},this.layerList=[]}var h=f.prototype;function d(t){var e=c.style.values,r=c.style.dflt,n={};return a.isPlainObject(t)?(n.id=t.id,n.style=t):"string"==typeof t?(n.id=t,n.style=-1!==e.indexOf(t)?p(t):t):(n.id=r,n.style=p(r)),n}function p(t){return l.styleUrlPrefix+t+"-"+l.styleUrlSuffix}function m(t){return[t.lon,t.lat]}e.exports=function(t){return new f(t)},h.plot=function(t,e,r){var n,i=this,a=i.opts=e[this.id];i.map&&a.accesstoken!==i.accessToken&&(i.map.remove(),i.map=null,i.styleObj=null,i.traceHash=[],i.layerList={}),n=i.map?new Promise(function(r,n){i.updateMap(t,e,r,n)}):new Promise(function(r,n){i.createMap(t,e,r,n)}),r.push(n)},h.createMap=function(t,e,r,o){var s=this,c=s.gd,u=s.opts,f=s.styleObj=d(u.style);s.accessToken=u.accesstoken;var h=s.map=new n.Map({container:s.div,style:f.style,center:m(u.center),zoom:u.zoom,bearing:u.bearing,pitch:u.pitch,interactive:!s.isStatic,preserveDrawingBuffer:s.isStatic,doubleClickZoom:!1,boxZoom:!1}),p=l.controlContainerClassName,v=s.div.getElementsByClassName(p)[0];function g(){i.loneUnhover(e._toppaper)}s.div.removeChild(v),h._canvas.canvas.style.left="0px",h._canvas.canvas.style.top="0px",s.rejectOnError(o),h.once("load",function(){s.updateData(t),s.updateLayout(e),s.resolveOnRender(r)}),s.isStatic||(h.on("moveend",function(t){if(s.map){var e=s.getView();if(u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,t.originalEvent){var r={};r[s.id]=a.extendFlat({},e),c.emit("plotly_relayout",r)}}}),h.on("mousemove",function(t){var e=s.div.getBoundingClientRect();t.clientX=t.point.x+e.left,t.clientY=t.point.y+e.top,t.target.getBoundingClientRect=function(){return e},s.xaxis.p2c=function(){return t.lngLat.lng},s.yaxis.p2c=function(){return t.lngLat.lat},i.hover(c,t,s.id)}),h.on("click",function(t){i.click(c,t.originalEvent)}),h.on("dragstart",g),h.on("zoomstart",g),h.on("dblclick",function(){var t=s.viewInitial;h.setCenter(m(t.center)),h.setZoom(t.zoom),h.setBearing(t.bearing),h.setPitch(t.pitch);var e=s.getView();u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,c.emit("plotly_doubleclick",null)}))},h.updateMap=function(t,e,r,n){var i=this,a=i.map;i.rejectOnError(n);var o=d(i.opts.style);i.styleObj.id!==o.id?(i.styleObj=o,a.setStyle(o.style),a.style.once("load",function(){i.traceHash={},i.updateData(t),i.updateLayout(e),i.resolveOnRender(r)})):(i.updateData(t),i.updateLayout(e),i.resolveOnRender(r))},h.updateData=function(t){var e,r,n,i,a=this.traceHash;for(n=0;n<t.length;n++){var o=t[n];(e=a[(r=o[0].trace).uid])?e.update(o):r._module&&(a[r.uid]=r._module.plot(this,o))}var s=Object.keys(a);t:for(n=0;n<s.length;n++){var l=s[n];for(i=0;i<t.length;i++)if(l===(r=t[i][0].trace).uid)continue t;(e=a[l]).dispose(),delete a[l]}},h.updateLayout=function(t){var e=this.map,r=this.opts;e.setCenter(m(r.center)),e.setZoom(r.zoom),e.setBearing(r.bearing),e.setPitch(r.pitch),this.updateLayers(),this.updateFramework(t),this.updateFx(t),this.map.resize()},h.resolveOnRender=function(t){var e=this.map;e.on("render",function r(){e.loaded()&&(e.off("render",r),t())})},h.rejectOnError=function(t){var e=this.map;function r(){t(new 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y=h.select(".legend-marks").selectAll("path.legend-mark").data(o);y.enter().append("path").classed("legend-mark",!0),y.attr({transform:function(t,e){return"translate("+[c/2,v(e)+c/2]+")"},d:function(t,e){var r,i,a,o=t.symbol;return a=3*(i=c),"line"===(r=o)?"M"+[[-i/2,-i/12],[i/2,-i/12],[i/2,i/12],[-i/2,i/12]]+"Z":-1!=n.svg.symbolTypes.indexOf(r)?n.svg.symbol().type(r).size(a)():n.svg.symbol().type("square").size(a)()},fill:function(t,e){return m(e)}}),y.exit().remove()}var b=n.svg.axis().scale(v).orient("right"),x=h.select("g.legend-axis").attr({transform:"translate("+[u?e.colorBandWidth:c,c/2]+")"}).call(b);return x.selectAll(".domain").style({fill:"none",stroke:"none"}),x.selectAll("line").style({fill:"none",stroke:u?e.textColor:"none"}),x.selectAll("text").style({fill:e.textColor,"font-size":e.fontSize}).text(function(t,e){return o[e].name}),r}return r.config=function(e){return arguments.length?(i(t,e),this):t},n.rebind(r,e,"on"),r},o.Legend.defaultConfig=function(t,e){return{data:["a","b","c"],legendConfig:{elements:[{symbol:"line",color:"red"},{symbol:"square",color:"yellow"},{symbol:"diamond",color:"limegreen"}],height:150,colorBandWidth:30,fontSize:12,container:"body",isContinuous:null,textColor:"grey",reverseOrder:!1}}},o.tooltipPanel=function(){var t,e,r,a={container:null,hasTick:!1,fontSize:12,color:"white",padding:5},s="tooltip-"+o.tooltipPanel.uid++,l=10,c=function(){var n=(t=a.container.selectAll("g."+s).data([0])).enter().append("g").classed(s,!0).style({"pointer-events":"none",display:"none"});return r=n.append("path").style({fill:"white","fill-opacity":.9}).attr({d:"M0 0"}),e=n.append("text").attr({dx:a.padding+l,dy:.3*+a.fontSize}),c};return c.text=function(i){var o=n.hsl(a.color).l,s=o>=.5?"#aaa":"white",u=o>=.5?"black":"white",f=i||"";e.style({fill:u,"font-size":a.fontSize+"px"}).text(f);var h=a.padding,d=e.node().getBBox(),p={fill:a.color,stroke:s,"stroke-width":"2px"},m=d.width+2*h+l,v=d.height+2*h;return r.attr({d:"M"+[[l,-v/2],[l,-v/4],[a.hasTick?0:l,0],[l,v/4],[l,v/2],[m,v/2],[m,-v/2]].join("L")+"Z"}).style(p),t.attr({transform:"translate("+[l,-v/2+2*h]+")"}),t.style({display:"block"}),c},c.move=function(e){if(t)return t.attr({transform:"translate("+[e[0],e[1]]+")"}).style({display:"block"}),c},c.hide=function(){if(t)return t.style({display:"none"}),c},c.show=function(){if(t)return t.style({display:"block"}),c},c.config=function(t){return i(a,t),c},c},o.tooltipPanel.uid=1,o.adapter={},o.adapter.plotly=function(){var t={convert:function(t,e){var r={};if(t.data&&(r.data=t.data.map(function(t,r){var n=i({},t);return[[n,["marker","color"],["color"]],[n,["marker","opacity"],["opacity"]],[n,["marker","line","color"],["strokeColor"]],[n,["marker","line","dash"],["strokeDash"]],[n,["marker","line","width"],["strokeSize"]],[n,["marker","symbol"],["dotType"]],[n,["marker","size"],["dotSize"]],[n,["marker","barWidth"],["barWidth"]],[n,["line","interpolation"],["lineInterpolation"]],[n,["showlegend"],["visibleInLegend"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e||delete n.marker,e&&delete n.groupId,e?("LinePlot"===n.geometry?(n.type="scatter",!0===n.dotVisible?(delete n.dotVisible,n.mode="lines+markers"):n.mode="lines"):"DotPlot"===n.geometry?(n.type="scatter",n.mode="markers"):"AreaChart"===n.geometry?n.type="area":"BarChart"===n.geometry&&(n.type="bar"),delete 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s=i({},t.layout);if([[s,["plot_bgcolor"],["backgroundColor"]],[s,["showlegend"],["showLegend"]],[s,["radialaxis"],["radialAxis"]],[s,["angularaxis"],["angularAxis"]],[s.angularaxis,["showline"],["gridLinesVisible"]],[s.angularaxis,["showticklabels"],["labelsVisible"]],[s.angularaxis,["nticks"],["ticksCount"]],[s.angularaxis,["tickorientation"],["tickOrientation"]],[s.angularaxis,["ticksuffix"],["ticksSuffix"]],[s.angularaxis,["range"],["domain"]],[s.angularaxis,["endpadding"],["endPadding"]],[s.radialaxis,["showline"],["gridLinesVisible"]],[s.radialaxis,["tickorientation"],["tickOrientation"]],[s.radialaxis,["ticksuffix"],["ticksSuffix"]],[s.radialaxis,["range"],["domain"]],[s.angularAxis,["showline"],["gridLinesVisible"]],[s.angularAxis,["showticklabels"],["labelsVisible"]],[s.angularAxis,["nticks"],["ticksCount"]],[s.angularAxis,["tickorientation"],["tickOrientation"]],[s.angularAxis,["ticksuffix"],["ticksSuffix"]],[s.angularAxis,["range"],["domain"]],[s.angularAxis,["endpadding"],["endPadding"]],[s.radialAxis,["showline"],["gridLinesVisible"]],[s.radialAxis,["tickorientation"],["tickOrientation"]],[s.radialAxis,["ticksuffix"],["ticksSuffix"]],[s.radialAxis,["range"],["domain"]],[s.font,["outlinecolor"],["outlineColor"]],[s.legend,["traceorder"],["reverseOrder"]],[s,["labeloffset"],["labelOffset"]],[s,["defaultcolorrange"],["defaultColorRange"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e?(void 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r=t._fullLayout,n="clip"+r._uid+e;this.clipIds.circle=n+"-circle",this.clipPaths.circle=r._clips.append("clipPath").attr("id",this.clipIds.circle),this.clipPaths.circle.append("path"),this.framework=r._polarlayer.append("g").attr("class",e),this.radialTickLayout=null,this.angularTickLayout=null}var E=T.prototype;function S(t,e,r){f.setConvert(t,r),t._min=e._min,t._max=e._max,t.setScale()}function L(t){var e=t.ticks+String(t.ticklen)+String(t.showticklabels);return"side"in t&&(e+=t.side),e}function C(t,e){if(z(e))return c.symbolFuncs[0](t);var r=t*Math.cos(x(e[0])),n=-t*Math.sin(x(e[0])),i=t*Math.cos(x(e[1])),a=-t*Math.sin(x(e[1]));return"M"+[r,n]+"A"+[t,t]+" "+(Math.abs(e[1]-e[0])<=180?[0,0,0]:[0,1,0])+" "+[i,a]}function P(t,e){return C(t,e)+(z(e)?"":"L0,0Z")}function z(t){return 360===Math.abs(t[1]-t[0])}function O(t,e,r){return e?(t.attr("display",null),t.attr(r)):t&&t.attr("display","none"),t}function D(t,e){return"translate("+t+","+e+")"}function I(t){return"rotate("+t+")"}function 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e,r,n,i,a=t[0],o=t[1]-a,s=w(a),l=s+o,c=Math.cos(x(s)),u=Math.sin(x(s)),f=Math.cos(x(l)),h=Math.sin(x(l));i=s<=90&&l>=90||s>90&&l>=450?1:u<=0&&h<=0?0:Math.max(u,h);e=s<=180&&l>=180||s>180&&l>=540?-1:c>=0&&f>=0?0:Math.min(c,f);r=s<=270&&l>=270||s>270&&l>=630?-1:u>=0&&h>=0?0:Math.min(u,h);n=l>=360?1:c<=0&&f<=0?0:Math.max(c,f);return[e,r,n,i]}(g),b=y[2]-y[0],_=y[3]-y[1],M=v/m,k=Math.abs(_/b);M>k?(s=m,p=(v-(u=m*k))/i.h/2,h=[a[0],a[1]],d=[o[0]+p,o[1]-p]):(u=v,p=(m-(s=v/k))/i.w/2,h=[a[0]+p,a[1]-p],d=[o[0],o[1]]),r.xLength2=s,r.yLength2=u,r.xDomain2=h,r.yDomain2=d;var A=r.xOffset2=i.l+i.w*h[0],T=r.yOffset2=i.t+i.h*(1-d[1]),E=r.radius=s/b,S=r.cx=A-E*y[0],L=r.cy=T+E*y[3],C=r.cxx=S-A,z=r.cyy=L-T;r.updateRadialAxis(t,e),r.updateRadialAxisTitle(t,e),r.updateAngularAxis(t,e);var O=r.radialAxis.range,I=O[1]-O[0],R=r.xaxis={type:"linear",_id:"x",range:[y[0]*I,y[2]*I],domain:h};f.setConvert(R,t),R.setScale();var 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r=this,i=r.gd,l=r.layers,u=r.radius,p=r.cx,m=r.cy,v=r.cxx,y=r.cyy,b=e.sector,w=A.angularDragBoxSize,T=d.makeDragger(l,"path","angulardrag","move"),E={element:T,gd:i};function S(t,e){return Math.atan2(y+w-e,t-v-w)}n.select(T).attr("d",function(t,e,r){var n,i,a,o=Math.abs(r[1]-r[0])<=180?0:1;function s(t,e){return[t*Math.cos(e),-t*Math.sin(e)]}function l(t,e,r){return"A"+[t,t]+" "+[0,o,r]+" "+s(t,e)}return z(r)?(n=0,a=2*Math.PI,i=Math.PI,"M"+s(t,n)+l(t,i,0)+l(t,a,0)+"ZM"+s(e,n)+l(e,i,1)+l(e,a,1)+"Z"):(n=x(r[0]),a=x(r[1]),"M"+s(t,n)+"L"+s(e,n)+l(e,a,0)+"L"+s(t,a)+l(t,n,1)+"Z")}(u,u+w,b)).attr("transform",D(p,m)).call(g,"move");var L,C,P,O,R,N,F=l.frontplot.select(".scatterlayer").selectAll(".trace"),j=F.selectAll(".point"),B=F.selectAll(".textpoint");function U(t,e){var a=S(L+t,C+e),u=_(a-N);O=P+u,l.frontplot.attr("transform",D(r.xOffset2,r.yOffset2)+I([-u,v,y])),r.clipPaths.circle.select("path").attr("transform",D(v,y)+I(u)),j.each(function(){var 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n={};n.attributes=t("./attributes"),n.layoutAttributes=t("./layout_attributes"),n.supplyDefaults=t("./defaults").supplyDefaults,n.supplyLayoutDefaults=t("./layout_defaults").supplyLayoutDefaults,n.calc=t("./calc"),n.setPositions=t("./set_positions").setPositions,n.plot=t("./plot").plot,n.style=t("./style"),n.hoverPoints=t("./hover").hoverPoints,n.selectPoints=t("./select"),n.moduleType="trace",n.name="box",n.basePlotModule=t("../../plots/cartesian"),n.categories=["cartesian","symbols","oriented","box-violin","showLegend"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"./attributes":877,"./calc":878,"./defaults":879,"./hover":880,"./layout_attributes":882,"./layout_defaults":883,"./plot":884,"./select":885,"./set_positions":886,"./style":887}],882:[function(t,e,r){"use 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.wdPos||0,h=a.bPosPxOffset||0,d=r.whiskerwidth||0,p=r.notched||!1,m=p?1-2*r.notchwidth:1;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.box").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","box").each(function(t){var e=t.pos,a=l.c2p(e+u,!0)+h,v=l.c2p(e+u-o,!0)+h,g=l.c2p(e+u+s,!0)+h,y=l.c2p(e+u-f,!0)+h,b=l.c2p(e+u+f,!0)+h,x=l.c2p(e+u-o*m,!0)+h,_=l.c2p(e+u+s*m,!0)+h,w=c.c2p(t.q1,!0),M=c.c2p(t.q3,!0),k=i.constrain(c.c2p(t.med,!0),Math.min(w,M)+1,Math.max(w,M)-1),A=c.c2p(!1===r.boxpoints?t.min:t.lf,!0),T=c.c2p(!1===r.boxpoints?t.max:t.uf,!0),E=c.c2p(t.ln,!0),S=c.c2p(t.un,!0);"h"===r.orientation?n.select(this).attr("d","M"+k+","+x+"V"+_+"M"+w+","+v+"V"+g+(p?"H"+E+"L"+k+","+_+"L"+S+","+g:"")+"H"+M+"V"+v+(p?"H"+S+"L"+k+","+x+"L"+E+","+v:"")+"ZM"+w+","+a+"H"+A+"M"+M+","+a+"H"+T+(0===d?"":"M"+A+","+y+"V"+b+"M"+T+","+y+"V"+b)):n.select(this).attr("d","M"+x+","+k+"H"+_+"M"+v+","+w+"H"+g+(p?"V"+E+"L"+_+","+k+"L"+g+","+S:"")+"V"+M+"H"+v+(p?"V"+S+"L"+x+","+k+"L"+v+","+E:"")+"ZM"+a+","+w+"V"+A+"M"+a+","+M+"V"+T+(0===d?"":"M"+y+","+A+"H"+b+"M"+y+","+T+"H"+b))})}function f(t,e,r,n){var u=e.x,f=e.y,h=n.bdPos,d=n.bPos,p=r.boxpoints||r.points;o=2e9,t.selectAll("g.points").data(function(t){return 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.bPosPxOffset||0;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.mean").data(i.identity).enter().append("path").attr("class","mean").style({fill:"none","vector-effect":"non-scaling-stroke"}).each(function(t){var e=l.c2p(t.pos+u,!0)+f,i=l.c2p(t.pos+u-o,!0)+f,a=l.c2p(t.pos+u+s,!0)+f,h=c.c2p(t.mean,!0),d=c.c2p(t.mean-t.sd,!0),p=c.c2p(t.mean+t.sd,!0);"h"===r.orientation?n.select(this).attr("d","M"+h+","+i+"V"+a+("sd"===r.boxmean?"m0,0L"+d+","+e+"L"+h+","+i+"L"+p+","+e+"Z":"")):n.select(this).attr("d","M"+i+","+h+"H"+a+("sd"===r.boxmean?"m0,0L"+e+","+d+"L"+i+","+h+"L"+e+","+p+"Z":""))})}e.exports={plot:function(t,e,r){var i=t._fullLayout,a=e.xaxis,o=e.yaxis;e.plot.select(".boxlayer").selectAll("g.trace.boxes").data(r).enter().append("g").attr("class","trace boxes").each(function(t){var e,r,s=t[0],l=s.t,c=s.trace,d=s.node3=n.select(this),p=i._numBoxes,m="group"===i.boxmode&&p>1,v=l.dPos*(1-i.boxgap)*(1-i.boxgroupgap)/(m?p:1),g=m?2*l.dPos*((l.num+.5)/p-.5)*(1-i.boxgap):0,y=v*c.whiskerwidth;!0!==c.visible||l.empty?n.select(this).remove():("h"===c.orientation?(e=o,r=a):(e=a,r=o),l.bPos=g,l.bdPos=v,l.wdPos=y,u(d,{pos:e,val:r},c,l),c.boxpoints&&f(d,{x:a,y:o},c,l),c.boxmean&&h(d,{pos:e,val:r},c,l))})},plotBoxAndWhiskers:u,plotPoints:f,plotBoxMean:h}},{"../../components/drawing":623,"../../lib":724,d3:128}],885:[function(t,e,r){"use strict";e.exports=function(t,e){var r,n,i=t.cd,a=t.xaxis,o=t.yaxis,s=[];if(!1===e)for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++)i[r].pts[n].selected=0;else for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++){var l=i[r].pts[n],c=a.c2p(l.x),u=o.c2p(l.y);e.contains([c,u])?(s.push({pointNumber:l.i,x:a.c2d(l.x),y:o.c2d(l.y)}),l.selected=1):l.selected=0}return s}},{}],886:[function(t,e,r){"use strict";var n=t("../../plots/cartesian/axes"),i=t("../../lib"),a=["v","h"];function o(t,e,r,a,o){var s,l,c,u=e.calcdata,f=e._fullLayout,h=[],d="violin"===t?"_numViolins":"_numBoxes";for(s=0;s<r.length;s++)for(c=u[r[s]],l=0;l<c.length;l++)h.push(c[l].pos);if(h.length){var p=i.distinctVals(h),m=p.minDiff/2;for(h.length===p.vals.length&&(f[d]=1),n.minDtick(a,p.minDiff,p.vals[0],!0),s=0;s<r.length;s++)(c=u[r[s]])[0].t.dPos=m;var v=(1-f[t+"gap"])*(1-f[t+"groupgap"])*m/f[d];n.expand(a,p.vals,{vpadminus:m+o[0]*v,vpadplus:m+o[1]*v})}}e.exports={setPositions:function(t,e){for(var r=t.calcdata,n=e.xaxis,i=e.yaxis,s=0;s<a.length;s++){for(var l=a[s],c="h"===l?i:n,u=[],f=0,h=0,d=0;d<r.length;d++){var p=r[d],m=p[0].t,v=p[0].trace;!0!==v.visible||"box"!==v.type||m.empty||v.orientation!==l||v.xaxis!==n._id||v.yaxis!==i._id||(u.push(d),!1!==v.boxpoints&&(f=Math.max(f,v.jitter-v.pointpos-1),h=Math.max(h,v.jitter+v.pointpos-1)))}o("box",t,u,c,[f,h])}},setPositionOffset:o}},{"../../lib":724,"../../plots/cartesian/axes":770}],887:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/color"),a=t("../../components/drawing");e.exports=function(t,e){var r=e?e[0].node3:n.select(t).selectAll("g.trace.boxes");r.style("opacity",function(t){return t[0].trace.opacity}),r.each(function(e){var r=n.select(this),o=e[0].trace,s=o.line.width;r.selectAll("path.box").style("stroke-width",s+"px").call(i.stroke,o.line.color).call(i.fill,o.fillcolor),r.selectAll("path.mean").style({"stroke-width":s,"stroke-dasharray":2*s+"px,"+s+"px"}).call(i.stroke,o.line.color);var l=r.selectAll("path.point");a.pointStyle(l,o,t),a.selectedPointStyle(l,o)})}},{"../../components/color":598,"../../components/drawing":623,d3:128}],888:[function(t,e,r){"use strict";var n=t("../../lib").extendFlat,i=t("../ohlc/attributes"),a=t("../box/attributes");function o(t){return{name:i.increasing.name,showlegend:i.increasing.showlegend,line:{color:n({},a.line.color,{dflt:t}),width:a.line.width,editType:"style"},fillcolor:a.fillcolor,editType:"style"}}e.exports={x:i.x,open:i.open,high:i.high,low:i.low,close:i.close,line:{width:n({},a.line.width,{}),editType:"style"},increasing:o(i.increasing.line.color.dflt),decreasing:o(i.decreasing.line.color.dflt),text:i.text,whiskerwidth:n({},a.whiskerwidth,{dflt:0})}},{"../../lib":724,"../box/attributes":877,"../ohlc/attributes":1006}],889:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../ohlc/ohlc_defaults"),a=t("../ohlc/direction_defaults"),o=t("../ohlc/helpers"),s=t("./attributes");function 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c=t[i],u=c.dim1,f=u.crossfilterDimensionIndex,h=c.canvasX,p=c.canvasY,g=c.dim2.crossfilterDimensionIndex,y=c.panelSizeX,b=c.panelSizeY,w=h+y;if(e||!V[f]||V[f][0]!==h||V[f][1]!==w){V[f]=[h,w];var M=q(f,g,h,p,y,b,u.crossfilterDimensionIndex,r||u.scatter?1:0,i,a,o);E.clearOnly=n,v(F,B,E,e?d.blockLineCount:C,C,M)}}},readPixel:function(t,e){return F.read({x:t,y:e,width:1,height:1,data:p}),p},readPixels:function(t,e,r,n){var i=new Uint8Array(4*r*n);return F.read({x:t,y:e,width:r,height:n,data:i}),i},destroy:function(){t.style["pointer-events"]="none",j.destroy()}}}},{"./constants":1017,glslify:253}],1021:[function(t,e,r){"use strict";var n=t("./lines"),i=t("./constants"),a=t("../../lib"),o=t("d3"),s=t("../../components/drawing"),l=t("../../lib/gup").keyFun,c=t("../../lib/gup").repeat,u=t("../../lib/gup").unwrap;function f(t){return!("visible"in t)||t.visible}function h(t){var e=t.range?t.range[0]:o.min(t.values),r=t.range?t.range[1]:o.max(t.values);return!isNaN(e)&&isFinite(e)||(e=0),!isNaN(r)&&isFinite(r)||(r=0),e===r&&(void 0===e?(e=0,r=1):0===e?(e-=1,r+=1):(e*=.9,r*=1.1)),[e,r]}function d(t,e){var r,n,i,a,o;for(r=0,i=1/0,a=(n=t.range())[0];r<n.length;r++){if((o=Math.abs(n[r]-e))>i)return a;i=o,a=n[r]}return n[n.length-1]}function p(t){return o.scale.linear().domain(h(t))}function m(t,e,r){var n=u(e),s=n.trace,l=n.lineColor,c=n.cscale,h=s.line,d=s.domain,m=s.dimensions,v=t.width,g=s.labelfont,y=s.tickfont,b=s.rangefont,x=a.extendDeep({},h,{color:l.map(p({values:l,range:[h.cmin,h.cmax]})),blockLineCount:i.blockLineCount,canvasOverdrag:i.overdrag*i.canvasPixelRatio}),_=Math.floor(v*(d.x[1]-d.x[0])),w=Math.floor(t.height*(d.y[1]-d.y[0])),M=t.margin||{l:80,r:80,t:100,b:80},k=_,A=w;return{key:r,colCount:m.filter(f).length,dimensions:m,tickDistance:i.tickDistance,unitToColor:function(t){var e=t.map(function(t){return t[0]}),r=t.map(function(t){return 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m[e.label]=(c||0)+1,{key:e.label+(c?"__"+c:""),label:e.label,tickFormat:e.tickformat,tickvals:e.tickvals,ticktext:e.ticktext,ordinal:!!e.tickvals,scatter:i.scatter||e.scatter,xIndex:n,crossfilterDimensionIndex:n,visibleIndex:e._index,height:r,values:e.values,paddedUnitValues:e.values.map(l).map(u),xScale:s,x:s(n),canvasX:s(n)*a,unitScale:function(t,e){return o.scale.linear().range([t-e,e])}(r,i.verticalPadding),domainScale:function(t,e,r){var n=h(r),i=r.ticktext;return r.tickvals?o.scale.ordinal().domain(r.tickvals.map(function(t,e){return function(r,n){if(e){var i=e[n];return null===i||void 0===i?t(r):i}return t(r)}}(o.format(r.tickformat),i))).range(r.tickvals.map(function(t){return(t-n[0])/(n[1]-n[0])}).map(function(r){return t-e+r*(e-(t-e))})):o.scale.linear().domain(n).range([t-e,e])}(r,i.verticalPadding,e),ordinalScale:function(t){var e=h(t);return t.tickvals&&o.scale.ordinal().domain(t.tickvals).range(t.tickvals.map(function(t){return(t-e[0])/(e[1]-e[0])}))}(e),domainToUnitScale:l,filter:e.constraintrange?e.constraintrange.map(l):[0,1],parent:d,model:t}}),d}function g(t){t.classed(i.cn.axisExtentText,!0).attr("text-anchor","middle").style("cursor","default").style("user-select","none")}e.exports=function(t,e,r,f,h,p){var y=!1,b=!0;var x=f.filter(function(t){return u(t).trace.visible}).map(m.bind(0,h)).map(v);r.each(function(t,e){return a.extendFlat(t,x[e])});var _=r.selectAll(".gl-canvas").each(function(t){t.viewModel=x[0],t.model=t.viewModel?t.viewModel.model:null}),w={renderers:[],dimensions:[]},M=null;_.filter(function(t){return t.pick}).style("pointer-events","auto").on("mousemove",function(t){if(b&&t.lineLayer&&p&&p.hover){var e=o.event,r=this.width,n=this.height,i=o.mouse(this),a=i[0],s=i[1];if(a<0||s<0||a>=r||s>=n)return;var l=t.lineLayer.readPixel(a,n-1-s),c=0!==l[3],u=c?l[2]+256*(l[1]+256*l[0]):null,f={x:a,y:s,clientX:e.clientX,clientY:e.clientY,dataIndex:t.model.key,curveNumber:u};u!==M&&(c?p.hover(f):p.unhover&&p.unhover(f),M=u)}}),_.style("opacity",function(t){return t.pick?.01:1}),e.style("background","rgba(255, 255, 255, 0)");var k=e.selectAll("."+i.cn.parcoords).data(x,l);k.exit().remove(),k.enter().append("g").classed(i.cn.parcoords,!0).attr("overflow","visible").style("box-sizing","content-box").style("position","absolute").style("left",0).style("overflow","visible").style("shape-rendering","crispEdges").style("pointer-events","none").call(function(t){var e=t.selectAll("defs").data(c,l);e.enter().append("defs");var r=e.selectAll("#"+i.id.filterBarPattern).data(c,l);r.enter().append("pattern").attr("id",i.id.filterBarPattern).attr("patternUnits","userSpaceOnUse"),r.attr("x",-i.bar.width).attr("width",i.bar.capturewidth).attr("height",function(t){return t.model.height});var n=r.selectAll("rect").data(c,l);n.enter().append("rect").attr("shape-rendering","crispEdges"),n.attr("height",function(t){return t.model.height}).attr("width",i.bar.width).attr("x",i.bar.width/2).attr("fill",i.bar.fillcolor).attr("fill-opacity",i.bar.fillopacity).attr("stroke",i.bar.strokecolor).attr("stroke-opacity",i.bar.strokeopacity).attr("stroke-width",i.bar.strokewidth)}),k.attr("width",function(t){return t.model.width+t.model.pad.l+t.model.pad.r}).attr("height",function(t){return t.model.height+t.model.pad.t+t.model.pad.b}).attr("transform",function(t){return"translate("+t.model.translateX+","+t.model.translateY+")"});var A=k.selectAll("."+i.cn.parcoordsControlView).data(c,l);A.enter().append("g").classed(i.cn.parcoordsControlView,!0).style("box-sizing","content-box"),A.attr("transform",function(t){return"translate("+t.model.pad.l+","+t.model.pad.t+")"});var T=A.selectAll("."+i.cn.yAxis).data(function(t){return t.dimensions},l);function E(t){return t.dimensions.some(function(t){return 0!==t.filter[0]||1!==t.filter[1]})}function S(t,e){return(i.scatter?function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=i,o=0;o<i;o++)for(var s=0;s<i;s++){var l=r[s+o*i]||(r[s+o*i]={}),c=n[s],u=n[s+1];l.dim1=n[o+1],l.dim2=u,l.canvasX=c.canvasX,l.panelSizeX=u.canvasX-c.canvasX,l.panelSizeY=e.model.canvasHeight/a,l.y=o*l.panelSizeY,l.canvasY=e.model.canvasHeight-l.y-l.panelSizeY}}:function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=0;a<1;a++)for(var o=0;o<i;o++){var s=r[o+a*i]||(r[o+a*i]={}),l=n[o],c=n[o+1];s.dim1=l,s.dim2=c,s.canvasX=l.canvasX,s.panelSizeX=c.canvasX-l.canvasX,s.panelSizeY=e.model.canvasHeight/1,s.y=a*s.panelSizeY,s.canvasY=e.model.canvasHeight-s.y-s.panelSizeY}})(t,e)}T.enter().append("g").classed(i.cn.yAxis,!0).each(function(t){w.dimensions.push(t)}),A.each(function(t){S(T,t)}),_.filter(function(t){return!!t.viewModel}).each(function(t){t.lineLayer=n(this,t,i.scatter),t.viewModel[t.key]=t.lineLayer,w.renderers.push(function(){t.lineLayer.render(t.viewModel.panels,!0)}),t.lineLayer.render(t.viewModel.panels,!t.context)}),T.attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),T.call(o.behavior.drag().origin(function(t){return t}).on("drag",function(t){var e=t.parent;b=!1,y||(t.x=Math.max(-i.overdrag,Math.min(t.model.width+i.overdrag,o.event.x)),t.canvasX=t.x*t.model.canvasPixelRatio,T.sort(function(t,e){return t.x-e.x}).each(function(e,r){e.xIndex=r,e.x=t===e?e.x:e.xScale(e.xIndex),e.canvasX=e.x*e.model.canvasPixelRatio}),S(T,e),T.filter(function(e){return 0!==Math.abs(t.xIndex-e.xIndex)}).attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),o.select(this).attr("transform","translate("+t.x+", 0)"),T.each(function(r,n,i){i===t.parent.key&&(e.dimensions[n]=r)}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer.render&&e.focusLayer.render(e.panels))}).on("dragend",function(t){var e=t.parent;y?"ending"===y&&(y=!1):(t.x=t.xScale(t.xIndex),t.canvasX=t.x*t.model.canvasPixelRatio,S(T,e),o.select(this).attr("transform",function(t){return"translate("+t.x+", 0)"}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer&&e.focusLayer.render(e.panels),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,p&&p.axesMoved&&p.axesMoved(e.key,e.dimensions.map(function(t){return t.crossfilterDimensionIndex})))})),T.exit().remove();var L=T.selectAll("."+i.cn.axisOverlays).data(c,l);L.enter().append("g").classed(i.cn.axisOverlays,!0),L.selectAll("."+i.cn.axis).remove();var C=L.selectAll("."+i.cn.axis).data(c,l);C.enter().append("g").classed(i.cn.axis,!0),C.each(function(t){var e=t.model.height/t.model.tickDistance,r=t.domainScale,n=r.domain();o.select(this).call(o.svg.axis().orient("left").tickSize(4).outerTickSize(2).ticks(e,t.tickFormat).tickValues(t.ordinal?n:null).tickFormat(t.ordinal?function(t){return t}:null).scale(r)),s.font(C.selectAll("text"),t.model.tickFont)}),C.selectAll(".domain, .tick>line").attr("fill","none").attr("stroke","black").attr("stroke-opacity",.25).attr("stroke-width","1px"),C.selectAll("text").style("text-shadow","1px 1px 1px #fff, -1px -1px 1px #fff, 1px -1px 1px #fff, -1px 1px 1px #fff").style("cursor","default").style("user-select","none");var P=L.selectAll("."+i.cn.axisHeading).data(c,l);P.enter().append("g").classed(i.cn.axisHeading,!0);var z=P.selectAll("."+i.cn.axisTitle).data(c,l);z.enter().append("text").classed(i.cn.axisTitle,!0).attr("text-anchor","middle").style("cursor","ew-resize").style("user-select","none").style("pointer-events","auto"),z.attr("transform","translate(0,"+-i.axisTitleOffset+")").text(function(t){return t.label}).each(function(t){s.font(z,t.model.labelFont)});var O=L.selectAll("."+i.cn.axisExtent).data(c,l);O.enter().append("g").classed(i.cn.axisExtent,!0);var D=O.selectAll("."+i.cn.axisExtentTop).data(c,l);D.enter().append("g").classed(i.cn.axisExtentTop,!0),D.attr("transform","translate(0,"+-i.axisExtentOffset+")");var I=D.selectAll("."+i.cn.axisExtentTopText).data(c,l);function R(t){return t.ordinal?function(){return""}:o.format(t.tickFormat)}I.enter().append("text").classed(i.cn.axisExtentTopText,!0).call(g),I.text(function(t){return R(t)(t.domainScale.domain().slice(-1)[0])}).each(function(t){s.font(I,t.model.rangeFont)});var N=O.selectAll("."+i.cn.axisExtentBottom).data(c,l);N.enter().append("g").classed(i.cn.axisExtentBottom,!0),N.attr("transform",function(t){return"translate(0,"+(t.model.height+i.axisExtentOffset)+")"});var F=N.selectAll("."+i.cn.axisExtentBottomText).data(c,l);F.enter().append("text").classed(i.cn.axisExtentBottomText,!0).attr("dy","0.75em").call(g),F.text(function(t){return R(t)(t.domainScale.domain()[0])}).each(function(t){s.font(F,t.model.rangeFont)});var j=L.selectAll("."+i.cn.axisBrush).data(c,l),B=j.enter().append("g").classed(i.cn.axisBrush,!0);j.each(function(t){t.brush||(t.brush=o.svg.brush().y(t.unitScale).on("brushstart",q).on("brush",H).on("brushend",G),0===t.filter[0]&&1===t.filter[1]||t.brush.extent(t.filter),o.select(this).call(t.brush))}),B.selectAll("rect").attr("x",-i.bar.capturewidth/2).attr("width",i.bar.capturewidth),B.selectAll("rect.extent").attr("fill","url(#"+i.id.filterBarPattern+")").style("cursor","ns-resize").filter(function(t){return 0===t.filter[0]&&1===t.filter[1]}).attr("y",-100),B.selectAll(".resize rect").attr("height",i.bar.handleheight).attr("opacity",0).style("visibility","visible"),B.selectAll(".resize.n rect").style("cursor","n-resize").attr("y",i.bar.handleoverlap-i.bar.handleheight),B.selectAll(".resize.s rect").style("cursor","s-resize").attr("y",i.bar.handleoverlap);var U=!1,V=!1;function q(){U=!0,y=!0}function H(t){b=!1;var e=t.parent,r=t.brush.extent(),n=e.dimensions,i=n[t.xIndex].filter,a=U&&r[0]===r[1];a&&(t.brush.clear(),o.select(this).select("rect.extent").attr("y",-100));var s=a?[0,1]:r.slice();if(s[0]!==i[0]||s[1]!==i[1]){n[t.xIndex].filter=s,e.focusLayer&&e.focusLayer.render(e.panels,!0);var l=E(e);!V&&l?(e.contextLayer&&e.contextLayer.render(e.panels,!0),V=!0):V&&!l&&(e.contextLayer&&e.contextLayer.render(e.panels,!0,!0),V=!1)}U=!1}function G(t){var e=t.parent,r=t.brush.extent(),n=r[0]===r[1],i=e.dimensions[t.xIndex].filter;if(!n&&t.ordinal&&(i[0]=d(t.ordinalScale,i[0]),i[1]=d(t.ordinalScale,i[1]),i[0]===i[1]&&(i[0]=Math.max(0,i[0]-.05),i[1]=Math.min(1,i[1]+.05)),o.select(this).transition().duration(150).call(t.brush.extent(i)),e.focusLayer.render(e.panels,!0)),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,y="ending",p&&p.filterChanged){var a=t.domainToUnitScale.invert,s=i.map(a);p.filterChanged(e.key,t.visibleIndex,s)}}return w}},{"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1017,"./lines":1020,d3:128}],1022:[function(t,e,r){(function(r){"use strict";var n=t("./parcoords"),i=t("regl");e.exports=function(t,e){var a=t._fullLayout,o=a._toppaper,s=a._paperdiv,l=a._glcontainer;a._glcanvas.each(function(e){e.regl||(e.regl=i({canvas:this,attributes:{antialias:!e.pick,preserveDrawingBuffer:!0},pixelRatio:t._context.plotGlPixelRatio||r.devicePixelRatio}))});var c={},u={},f=a._size;e.forEach(function(e,r){c[r]=t.data[r].dimensions,u[r]=t.data[r].dimensions.slice()});n(s,o,l,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{filterChanged:function(e,r,n){var i=u[e][r],a=i.constraintrange;a&&2===a.length||(a=i.constraintrange=[]),a[0]=n[0],a[1]=n[1],t.emit("plotly_restyle")},hover:function(e){t.emit("plotly_hover",e)},unhover:function(e){t.emit("plotly_unhover",e)},axesMoved:function(e,r){function n(t){return!("visible"in t)||t.visible}function i(t,e,r){var n=e.indexOf(r),i=t.indexOf(n);return-1===i&&(i+=e.length),i}var a=function(t){return function(e,n){return i(r,t,e)-i(r,t,n)}}(u[e].filter(n));c[e].sort(a),u[e].filter(function(t){return!n(t)}).sort(function(t){return u[e].indexOf(t)}).forEach(function(t){c[e].splice(c[e].indexOf(t),1),c[e].splice(u[e].indexOf(t),0,t)}),t.emit("plotly_restyle")}})}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof 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n=t("../../components/color/attributes"),i=t("../../plots/font_attributes"),a=t("../../plots/attributes"),o=t("../../plots/domain_attributes"),s=t("../../lib/extend").extendFlat,l=i({editType:"calc",colorEditType:"style"});e.exports={labels:{valType:"data_array",editType:"calc"},label0:{valType:"number",dflt:0,editType:"calc"},dlabel:{valType:"number",dflt:1,editType:"calc"},values:{valType:"data_array",editType:"calc"},marker:{colors:{valType:"data_array",editType:"calc"},line:{color:{valType:"color",dflt:n.defaultLine,arrayOk:!0,editType:"style"},width:{valType:"number",min:0,dflt:0,arrayOk:!0,editType:"style"},editType:"calc"},editType:"calc"},text:{valType:"data_array",editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},scalegroup:{valType:"string",dflt:"",editType:"calc"},textinfo:{valType:"flaglist",flags:["label","text","value","percent"],extras:["none"],editType:"calc"},hoverinfo:s({},a.hoverinfo,{flags:["label","text","value","percent","name"]}),textposition:{valType:"enumerated",values:["inside","outside","auto","none"],dflt:"auto",arrayOk:!0,editType:"calc"},textfont:s({},l,{}),insidetextfont:s({},l,{}),outsidetextfont:s({},l,{}),domain:o({name:"pie",trace:!0,editType:"calc"}),hole:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},sort:{valType:"boolean",dflt:!0,editType:"calc"},direction:{valType:"enumerated",values:["clockwise","counterclockwise"],dflt:"counterclockwise",editType:"calc"},rotation:{valType:"number",min:-360,max:360,dflt:0,editType:"calc"},pull:{valType:"number",min:0,max:1,dflt:0,arrayOk:!0,editType:"calc"}}},{"../../components/color/attributes":597,"../../lib/extend":713,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1024:[function(t,e,r){"use 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r,n,u,f,h,d=e.values,p=Array.isArray(d)&&d.length,m=e.labels,v=e.marker.colors||[],g=[],y=t._fullLayout,b=y.colorway,x=y._piecolormap,_={},w=0,M=y.hiddenlabels||[];if(y._piecolorway||b===o.defaults||(y._piecolorway=c(b)),e.dlabel)for(m=new Array(d.length),r=0;r<d.length;r++)m[r]=String(e.label0+r*e.dlabel);function k(t,e){return!!t&&(!!(t=a(t)).isValid()&&(t=o.addOpacity(t,t.getAlpha()),x[e]||(x[e]=t),t))}var A=(p?d:m).length;for(r=0;r<A;r++){if(p){if(n=d[r],!i(n))continue;if((n=+n)<0)continue}else n=1;void 0!==(u=m[r])&&""!==u||(u=r);var T=_[u=String(u)];void 0===T?(_[u]=g.length,(f=-1!==M.indexOf(u))||(w+=n),g.push({v:n,label:u,color:k(v[r]),i:r,pts:[r],hidden:f})):((h=g[T]).v+=n,h.pts.push(r),h.hidden||(w+=n),!1===h.color&&v[r]&&(h.color=k(v[r],u)))}for(e.sort&&g.sort(function(t,e){return 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void(e.visible=!1);o("label0"),o("dlabel")}o("marker.line.width")&&o("marker.line.color"),o("marker.colors"),o("scalegroup");var u=o("text"),f=o("textinfo",Array.isArray(u)?"text+percent":"percent");if(o("hovertext"),f&&"none"!==f){var h=o("textposition"),d=Array.isArray(h)||"auto"===h,p=d||"inside"===h,m=d||"outside"===h;if(p||m){var v=s(o,"textfont",a.font);p&&s(o,"insidetextfont",v),m&&s(o,"outsidetextfont",v)}}o("domain.x"),o("domain.y"),o("hole"),o("sort"),o("direction"),o("rotation"),o("pull")}},{"../../lib":724,"./attributes":1023}],1027:[function(t,e,r){"use strict";var n=t("../../components/fx/helpers").appendArrayMultiPointValues;e.exports=function(t,e){var r={curveNumber:e.index,pointNumbers:t.pts,data:e._input,fullData:e,label:t.label,color:t.color,value:t.v,v:t.v};return 1===t.pts.length&&(r.pointNumber=r.i=t.pts[0]),n(r,e,t.pts),r}},{"../../components/fx/helpers":637}],1028:[function(t,e,r){"use strict";var n=t("../../lib");r.formatPiePercent=function(t,e){var r=(100*t).toPrecision(3);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)+"%"},r.formatPieValue=function(t,e){var r=t.toPrecision(10);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)},r.getFirstFilled=function(t,e){if(Array.isArray(t))for(var r=0;r<e.length;r++){var n=t[e[r]];if(n||0===n)return n}},r.castOption=function(t,e){return Array.isArray(t)?r.getFirstFilled(t,e):t||void 0}},{"../../lib":724}],1029:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.supplyLayoutDefaults=t("./layout_defaults"),n.layoutAttributes=t("./layout_attributes"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.styleOne=t("./style_one"),n.moduleType="trace",n.name="pie",n.basePlotModule=t("./base_plot"),n.categories=["pie","showLegend"],n.meta={},e.exports=n},{"./attributes":1023,"./base_plot":1024,"./calc":1025,"./defaults":1026,"./layout_attributes":1030,"./layout_defaults":1031,"./plot":1032,"./style":1033,"./style_one":1034}],1030:[function(t,e,r){"use strict";e.exports={hiddenlabels:{valType:"data_array",editType:"calc"}}},{}],1031:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e){var r,a;r="hiddenlabels",n.coerce(t,e,i,r,a)}},{"../../lib":724,"./layout_attributes":1030}],1032:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/fx"),a=t("../../components/color"),o=t("../../components/drawing"),s=t("../../lib/svg_text_utils"),l=t("./helpers"),c=t("./event_data");function u(t,e){if(t.v===e.vTotal&&!e.trace.hole)return 1;var r=Math.PI*Math.min(t.v/e.vTotal,.5);return Math.min(1/(1+1/Math.sin(r)),(1-e.trace.hole)/2)}function f(t,e){var r=e.pxmid[0],n=e.pxmid[1],i=t.width/2,a=t.height/2;return r<0&&(i*=-1),n<0&&(a*=-1),{scale:1,rCenter:1,rotate:0,x:i+Math.abs(a)*(i>0?1:-1)/2,y:a/(1+r*r/(n*n)),outside:!0}}e.exports=function(t,e){var r=t._fullLayout;!function(t,e){var r,n,i,a,o,s,l,c,u,f=[];for(i=0;i<t.length;i++){if(o=t[i][0],s=o.trace,r=e.w*(s.domain.x[1]-s.domain.x[0]),n=e.h*(s.domain.y[1]-s.domain.y[0]),l=s.pull,Array.isArray(l))for(l=0,a=0;a<s.pull.length;a++)s.pull[a]>l&&(l=s.pull[a]);o.r=Math.min(r,n)/(2+2*l),o.cx=e.l+e.w*(s.domain.x[1]+s.domain.x[0])/2,o.cy=e.t+e.h*(2-s.domain.y[1]-s.domain.y[0])/2,s.scalegroup&&-1===f.indexOf(s.scalegroup)&&f.push(s.scalegroup)}for(a=0;a<f.length;a++){for(u=1/0,c=f[a],i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(u=Math.min(u,o.r*o.r/o.vTotal));for(i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(o.r=Math.sqrt(u*o.vTotal))}}(e,r._size);var h=r._pielayer.selectAll("g.trace").data(e);h.enter().append("g").attr({"stroke-linejoin":"round",class:"trace"}),h.exit().remove(),h.order(),h.each(function(e){var h=n.select(this),d=e[0],p=d.trace;!function(t){var 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o=t._fullLayout,s=t._fullData[p.index];if(!t._dragging&&!1!==o.hovermode){var f=s.hoverinfo;if(Array.isArray(f)&&(f=i.castHoverinfo({hoverinfo:[l.castOption(f,e.pts)],_module:p._module},o,0)),"all"===f&&(f="label+text+value+percent+name"),"none"!==f&&"skip"!==f&&f){var m=u(e,d),v=a+e.pxmid[0]*(1-m),g=h+e.pxmid[1]*(1-m),y=r.separators,_=[];if(-1!==f.indexOf("label")&&_.push(e.label),-1!==f.indexOf("text")){var w=l.castOption(s.hovertext||s.text,e.pts);w&&_.push(w)}-1!==f.indexOf("value")&&_.push(l.formatPieValue(e.v,y)),-1!==f.indexOf("percent")&&_.push(l.formatPiePercent(e.v/d.vTotal,y));var M=p.hoverlabel,k=M.font;i.loneHover({x0:v-m*d.r,x1:v+m*d.r,y:g,text:_.join("<br>"),name:-1!==f.indexOf("name")?s.name:void 0,idealAlign:e.pxmid[0]<0?"left":"right",color:l.castOption(M.bgcolor,e.pts)||e.color,borderColor:l.castOption(M.bordercolor,e.pts),fontFamily:l.castOption(k.family,e.pts),fontSize:l.castOption(k.size,e.pts),fontColor:l.castOption(k.color,e.pts)},{container:o._hoverlayer.node(),outerContainer:o._paper.node(),gd:t}),b=!0}t.emit("plotly_hover",{points:[c(e,s)],event:n.event}),x=!0}}).on("mouseout",function(r){var a=t._fullLayout,o=t._fullData[p.index];x&&(r.originalEvent=n.event,t.emit("plotly_unhover",{points:[c(e,o)],event:n.event}),x=!1),b&&(i.loneUnhover(a._hoverlayer.node()),b=!1)}).on("click",function(){var r=t._fullLayout,a=t._fullData[p.index];t._dragging||!1===r.hovermode||(t._hoverdata=[c(e,a)],i.click(t,n.event))}),p.pull){var _=+l.castOption(p.pull,e.pts)||0;_>0&&(a+=_*e.pxmid[0],h+=_*e.pxmid[1])}e.cxFinal=a,e.cyFinal=h;var w=p.hole;if(e.v===d.vTotal){var M="M"+(a+e.px0[0])+","+(h+e.px0[1])+S(e.px0,e.pxmid,!0,1)+S(e.pxmid,e.px0,!0,1)+"Z";w?y.attr("d","M"+(a+w*e.px0[0])+","+(h+w*e.px0[1])+S(e.px0,e.pxmid,!1,w)+S(e.pxmid,e.px0,!1,w)+"Z"+M):y.attr("d",M)}else{var k=S(e.px0,e.px1,!0,1);if(w){var A=1-w;y.attr("d","M"+(a+w*e.px1[0])+","+(h+w*e.px1[1])+S(e.px1,e.px0,!1,w)+"l"+A*e.px0[0]+","+A*e.px0[1]+k+"Z")}else y.attr("d","M"+a+","+h+"l"+e.px0[0]+","+e.px0[1]+k+"Z")}var T=l.castOption(p.textposition,e.pts),E=g.selectAll("g.slicetext").data(e.text&&"none"!==T?[0]:[]);E.enter().append("g").classed("slicetext",!0),E.exit().remove(),E.each(function(){var r=n.select(this).selectAll("text").data([0]);r.enter().append("text").attr("data-notex",1),r.exit().remove(),r.text(e.text).attr({class:"slicetext",transform:"","text-anchor":"middle"}).call(o.font,"outside"===T?p.outsidetextfont:p.insidetextfont).call(s.convertToTspans,t);var i,l=o.bBox(r.node());"outside"===T?i=f(l,e):(i=function(t,e,r){var n=Math.sqrt(t.width*t.width+t.height*t.height),i=t.width/t.height,a=Math.PI*Math.min(e.v/r.vTotal,.5),o=1-r.trace.hole,s=u(e,r),l={scale:s*r.r*2/n,rCenter:1-s,rotate:0};if(l.scale>=1)return l;var c=i+1/(2*Math.tan(a)),f=r.r*Math.min(1/(Math.sqrt(c*c+.5)+c),o/(Math.sqrt(i*i+o/2)+i)),h={scale:2*f/t.height,rCenter:Math.cos(f/r.r)-f*i/r.r,rotate:(180/Math.PI*e.midangle+720)%180-90},d=1/i,p=d+1/(2*Math.tan(a)),m=r.r*Math.min(1/(Math.sqrt(p*p+.5)+p),o/(Math.sqrt(d*d+o/2)+d)),v={scale:2*m/t.width,rCenter:Math.cos(m/r.r)-m/i/r.r,rotate:(180/Math.PI*e.midangle+810)%180-90},g=v.scale>h.scale?v:h;return l.scale<1&&g.scale>l.scale?g:l}(l,e,d),"auto"===T&&i.scale<1&&(r.call(o.font,p.outsidetextfont),p.outsidetextfont.family===p.insidetextfont.family&&p.outsidetextfont.size===p.insidetextfont.size||(l=o.bBox(r.node())),i=f(l,e)));var c=a+e.pxmid[0]*i.rCenter+(i.x||0),m=h+e.pxmid[1]*i.rCenter+(i.y||0);i.outside&&(e.yLabelMin=m-l.height/2,e.yLabelMid=m,e.yLabelMax=m+l.height/2,e.labelExtraX=0,e.labelExtraY=0,v=!0),r.attr("transform","translate("+c+","+m+")"+(i.scale<1?"scale("+i.scale+")":"")+(i.rotate?"rotate("+i.rotate+")":"")+"translate("+-(l.left+l.right)/2+","+-(l.top+l.bottom)/2+")")})}function S(t,r,n,i){return"a"+i*d.r+","+i*d.r+" 0 "+e.largeArc+(n?" 1 ":" 0 ")+i*(r[0]-t[0])+","+i*(r[1]-t[1])}}),v&&function(t,e){var r,n,i,a,o,s,c,u,f,h,d,p,m;function v(t,e){return t.pxmid[1]-e.pxmid[1]}function g(t,e){return e.pxmid[1]-t.pxmid[1]}function y(t,r){r||(r={});var i,u,f,d,p,m,v=r.labelExtraY+(n?r.yLabelMax:r.yLabelMin),g=n?t.yLabelMin:t.yLabelMax,y=n?t.yLabelMax:t.yLabelMin,b=t.cyFinal+o(t.px0[1],t.px1[1]),x=v-g;if(x*c>0&&(t.labelExtraY=x),Array.isArray(e.pull))for(u=0;u<h.length;u++)(f=h[u])===t||(l.castOption(e.pull,t.pts)||0)>=(l.castOption(e.pull,f.pts)||0)||((t.pxmid[1]-f.pxmid[1])*c>0?(d=f.cyFinal+o(f.px0[1],f.px1[1]),(x=d-g-t.labelExtraY)*c>0&&(t.labelExtraY+=x)):(y+t.labelExtraY-b)*c>0&&(i=3*s*Math.abs(u-h.indexOf(t)),p=f.cxFinal+a(f.px0[0],f.px1[0]),(m=p+i-(t.cxFinal+t.pxmid[0])-t.labelExtraX)*s>0&&(t.labelExtraX+=m)))}for(n=0;n<2;n++)for(i=n?v:g,o=n?Math.max:Math.min,c=n?1:-1,r=0;r<2;r++){for(a=r?Math.max:Math.min,s=r?1:-1,(u=t[n][r]).sort(i),f=t[1-n][r],h=f.concat(u),p=[],d=0;d<u.length;d++)void 0!==u[d].yLabelMid&&p.push(u[d]);for(m=!1,d=0;n&&d<f.length;d++)if(void 0!==f[d].yLabelMid){m=f[d];break}for(d=0;d<p.length;d++){var b=d&&p[d-1];m&&!d&&(b=m),y(p[d],b)}}}(m,p),h.each(function(t){if(t.labelExtraX||t.labelExtraY){var e=n.select(this),r=e.select("g.slicetext text");r.attr("transform","translate("+t.labelExtraX+","+t.labelExtraY+")"+r.attr("transform"));var i=t.cxFinal+t.pxmid[0],o="M"+i+","+(t.cyFinal+t.pxmid[1]),s=(t.yLabelMax-t.yLabelMin)*(t.pxmid[0]<0?-1:1)/4;if(t.labelExtraX){var l=t.labelExtraX*t.pxmid[1]/t.pxmid[0],c=t.yLabelMid+t.labelExtraY-(t.cyFinal+t.pxmid[1]);Math.abs(l)>Math.abs(c)?o+="l"+c*t.pxmid[0]/t.pxmid[1]+","+c+"H"+(i+t.labelExtraX+s):o+="l"+t.labelExtraX+","+l+"v"+(c-l)+"h"+s}else o+="V"+(t.yLabelMid+t.labelExtraY)+"h"+s;e.append("path").classed("textline",!0).call(a.stroke,p.outsidetextfont.color).attr({"stroke-width":Math.min(2,p.outsidetextfont.size/8),d:o,fill:"none"})}})})}),setTimeout(function(){h.selectAll("tspan").each(function(){var t=n.select(this);t.attr("dy")&&t.attr("dy",t.attr("dy"))})},0)}},{"../../components/color":598,"../../components/drawing":623,"../../components/fx":640,"../../lib/svg_text_utils":747,"./event_data":1027,"./helpers":1028,d3:128}],1033:[function(t,e,r){"use strict";var n=t("d3"),i=t("./style_one");e.exports=function(t){t._fullLayout._pielayer.selectAll(".trace").each(function(t){var e=t[0].trace,r=n.select(this);r.style({opacity:e.opacity}),r.selectAll("path.surface").each(function(t){n.select(this).call(i,t,e)})})}},{"./style_one":1034,d3:128}],1034:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./helpers").castOption;e.exports=function(t,e,r){var a=r.marker.line,o=i(a.color,e.pts)||n.defaultLine,s=i(a.width,e.pts)||0;t.style({"stroke-width":s}).call(n.fill,e.color).call(n.stroke,o)}},{"../../components/color":598,"./helpers":1028}],1035:[function(t,e,r){"use strict";var n=t("../scatter/attributes");e.exports={x:n.x,y:n.y,xy:{valType:"data_array",editType:"calc"},indices:{valType:"data_array",editType:"calc"},xbounds:{valType:"data_array",editType:"calc"},ybounds:{valType:"data_array",editType:"calc"},text:n.text,marker:{color:{valType:"color",arrayOk:!1,editType:"calc"},opacity:{valType:"number",min:0,max:1,dflt:1,arrayOk:!1,editType:"calc"},blend:{valType:"boolean",dflt:null,editType:"calc"},sizemin:{valType:"number",min:.1,max:2,dflt:.5,editType:"calc"},sizemax:{valType:"number",min:.1,dflt:20,editType:"calc"},border:{color:{valType:"color",arrayOk:!1,editType:"calc"},arearatio:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},editType:"calc"},editType:"calc"}}},{"../scatter/attributes":1048}],1036:[function(t,e,r){"use strict";var n=t("gl-pointcloud2d"),i=t("../../lib/str2rgbarray"),a=t("../scatter/get_trace_color"),o=["xaxis","yaxis"];function s(t,e){this.scene=t,this.uid=e,this.type="pointcloud",this.pickXData=[],this.pickYData=[],this.xData=[],this.yData=[],this.textLabels=[],this.color="rgb(0, 0, 0)",this.name="",this.hoverinfo="all",this.idToIndex=new Int32Array(0),this.bounds=[0,0,0,0],this.pointcloudOptions={positions:new Float32Array(0),idToIndex:this.idToIndex,sizemin:.5,sizemax:12,color:[0,0,0,1],areaRatio:1,borderColor:[0,0,0,1]},this.pointcloud=n(t.glplot,this.pointcloudOptions),this.pointcloud._trace=this}var l=s.prototype;l.handlePick=function(t){var e=this.idToIndex[t.pointId];return{trace:this,dataCoord:t.dataCoord,traceCoord:this.pickXYData?[this.pickXYData[2*e],this.pickXYData[2*e+1]]:[this.pickXData[e],this.pickYData[e]],textLabel:Array.isArray(this.textLabels)?this.textLabels[e]:this.textLabels,color:this.color,name:this.name,pointIndex:e,hoverinfo:this.hoverinfo}},l.update=function(t){this.index=t.index,this.textLabels=t.text,this.name=t.name,this.hoverinfo=t.hoverinfo,this.bounds=[1/0,1/0,-1/0,-1/0],this.updateFast(t),this.color=a(t,{})},l.updateFast=function(t){var e,r,n,a,o,s,l=this.xData=this.pickXData=t.x,c=this.yData=this.pickYData=t.y,u=this.pickXYData=t.xy,f=t.xbounds&&t.ybounds,h=t.indices,d=this.bounds;if(u){if(n=u,e=u.length>>>1,f)d[0]=t.xbounds[0],d[2]=t.xbounds[1],d[1]=t.ybounds[0],d[3]=t.ybounds[1];else for(s=0;s<e;s++)a=n[2*s],o=n[2*s+1],a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);if(h)r=h;else for(r=new Int32Array(e),s=0;s<e;s++)r[s]=s}else for(e=l.length,n=new Float32Array(2*e),r=new Int32Array(e),s=0;s<e;s++)a=l[s],o=c[s],r[s]=s,n[2*s]=a,n[2*s+1]=o,a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);this.idToIndex=r,this.pointcloudOptions.idToIndex=r,this.pointcloudOptions.positions=n;var p=i(t.marker.color),m=i(t.marker.border.color),v=t.opacity*t.marker.opacity;p[3]*=v,this.pointcloudOptions.color=p;var g=t.marker.blend;if(null===g){g=l.length<100||c.length<100}this.pointcloudOptions.blend=g,m[3]*=v,this.pointcloudOptions.borderColor=m;var y=t.marker.sizemin,b=Math.max(t.marker.sizemax,t.marker.sizemin);this.pointcloudOptions.sizeMin=y,this.pointcloudOptions.sizeMax=b,this.pointcloudOptions.areaRatio=t.marker.border.arearatio,this.pointcloud.update(this.pointcloudOptions),this.expandAxesFast(d,b/2)},l.expandAxesFast=function(t,e){for(var r,n,i,a=e||.5,s=0;s<2;s++)(n=(r=this.scene[o[s]])._min)||(n=[]),n.push({val:t[s],pad:a}),(i=r._max)||(i=[]),i.push({val:t[s+2],pad:a})},l.dispose=function(){this.pointcloud.dispose()},e.exports=function(t,e){var r=new s(t,e.uid);return r.update(e),r}},{"../../lib/str2rgbarray":746,"../scatter/get_trace_color":1058,"gl-pointcloud2d":212}],1037:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}a("x"),a("y"),a("xbounds"),a("ybounds"),t.xy&&t.xy instanceof Float32Array&&(e.xy=t.xy),t.indices&&t.indices instanceof Int32Array&&(e.indices=t.indices),a("text"),a("marker.color",r),a("marker.opacity"),a("marker.blend"),a("marker.sizemin"),a("marker.sizemax"),a("marker.border.color",r),a("marker.border.arearatio")}},{"../../lib":724,"./attributes":1035}],1038:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("../scatter3d/calc"),n.plot=t("./convert"),n.moduleType="trace",n.name="pointcloud",n.basePlotModule=t("../../plots/gl2d"),n.categories=["gl","gl2d","showLegend"],n.meta={},e.exports=n},{"../../plots/gl2d":810,"../scatter3d/calc":1074,"./attributes":1035,"./convert":1036,"./defaults":1037}],1039:[function(t,e,r){"use strict";var n=t("../../plots/font_attributes"),i=t("../../plots/attributes"),a=t("../../components/color/attributes"),o=t("../../components/fx/attributes"),s=t("../../plots/domain_attributes"),l=t("../../lib/extend").extendFlat,c=t("../../plot_api/edit_types").overrideAll;e.exports=c({hoverinfo:l({},i.hoverinfo,{flags:["label","text","value","percent","name"]}),hoverlabel:o.hoverlabel,domain:s({name:"sankey",trace:!0}),orientation:{valType:"enumerated",values:["v","h"],dflt:"h"},valueformat:{valType:"string",dflt:".3s"},valuesuffix:{valType:"string",dflt:""},arrangement:{valType:"enumerated",values:["snap","perpendicular","freeform","fixed"],dflt:"snap"},textfont:n({}),node:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:.5,arrayOk:!0}},pad:{valType:"number",arrayOk:!1,min:0,dflt:20},thickness:{valType:"number",arrayOk:!1,min:1,dflt:20}},link:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:0,arrayOk:!0}},source:{valType:"data_array",dflt:[]},target:{valType:"data_array",dflt:[]},value:{valType:"data_array",dflt:[]}}},"calc","nested")},{"../../components/color/attributes":597,"../../components/fx/attributes":632,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1040:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("../../plots/get_data").getModuleCalcData,a=t("./plot"),o=t("../../components/fx/layout_attributes");r.name="sankey",r.baseLayoutAttrOverrides=n({hoverlabel:o.hoverlabel},"plot","nested"),r.plot=function(t){var e=i(t.calcdata,"sankey");a(t,e)},r.clean=function(t,e,r,n){var i=n._has&&n._has("sankey"),a=e._has&&e._has("sankey");i&&!a&&n._paperdiv.selectAll(".sankey").remove()}},{"../../components/fx/layout_attributes":641,"../../plot_api/edit_types":754,"../../plots/get_data":807,"./plot":1045}],1041:[function(t,e,r){"use strict";var n=t("strongly-connected-components"),i=t("../../lib"),a=t("../../lib/gup").wrap;e.exports=function(t,e){return function(t,e,r){for(var i=t.map(function(){return[]}),a=0;a<Math.min(e.length,r.length);a++){if(e[a]===r[a])return!0;i[e[a]].push(r[a])}return n(i).components.some(function(t){return t.length>1})}(e.node.label,e.link.source,e.link.target)&&(i.error("Circularity is present in the Sankey data. Removing all nodes and links."),e.link.label=[],e.link.source=[],e.link.target=[],e.link.value=[],e.link.color=[],e.node.label=[],e.node.color=[]),a({link:e.link,node:e.node})}},{"../../lib":724,"../../lib/gup":721,"strongly-connected-components":517}],1042:[function(t,e,r){"use strict";e.exports={nodeTextOffsetHorizontal:4,nodeTextOffsetVertical:3,nodePadAcross:10,sankeyIterations:50,forceIterations:5,forceTicksPerFrame:10,duration:500,ease:"cubic-in-out",cn:{sankey:"sankey",sankeyLinks:"sankey-links",sankeyLink:"sankey-link",sankeyNodeSet:"sankey-node-set",sankeyNode:"sankey-node",nodeRect:"node-rect",nodeCapture:"node-capture",nodeCentered:"node-entered",nodeLabelGuide:"node-label-guide",nodeLabel:"node-label",nodeLabelTextPath:"node-label-text-path"}}},{}],1043:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("../../components/color"),o=t("tinycolor2");e.exports=function(t,e,r,s){function l(r,a){return n.coerce(t,e,i,r,a)}l("node.label"),l("node.pad"),l("node.thickness"),l("node.line.color"),l("node.line.width");var c=s.colorway;l("node.color",e.node.label.map(function(t,e){return a.addOpacity(function(t){return c[t%c.length]}(e),.8)})),l("link.label"),l("link.source"),l("link.target"),l("link.value"),l("link.line.color"),l("link.line.width"),l("link.color",e.link.value.map(function(){return o(s.paper_bgcolor).getLuminance()<.333?"rgba(255, 255, 255, 0.6)":"rgba(0, 0, 0, 0.2)"})),l("domain.x"),l("domain.y"),l("orientation"),l("valueformat"),l("valuesuffix"),l("arrangement"),n.coerceFont(l,"textfont",n.extendFlat({},s.font));e.node.label.some(function(t,r){return-1===e.link.source.indexOf(r)&&-1===e.link.target.indexOf(r)})&&n.warn("Some of the nodes are neither sources nor targets, they will not be displayed.")}},{"../../components/color":598,"../../lib":724,"./attributes":1039,tinycolor2:526}],1044:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("./calc"),n.plot=t("./plot"),n.moduleType="trace",n.name="sankey",n.basePlotModule=t("./base_plot"),n.categories=["noOpacity"],n.meta={},e.exports=n},{"./attributes":1039,"./base_plot":1040,"./calc":1041,"./defaults":1043,"./plot":1045}],1045:[function(t,e,r){"use strict";var n=t("d3"),i=t("./render"),a=t("../../components/fx"),o=t("../../components/color"),s=t("../../lib"),l=t("./constants").cn,c=s._;function u(t){return""!==t}function f(t,e){return t.filter(function(t){return t.key===e.traceId})}function h(t,e){n.select(t).select("path").style("fill-opacity",e),n.select(t).select("rect").style("fill-opacity",e)}function d(t){n.select(t).select("text.name").style("fill","black")}function p(t){return function(e){return-1!==t.node.sourceLinks.indexOf(e.link)||-1!==t.node.targetLinks.indexOf(e.link)}}function m(t){return function(e){return-1!==e.node.sourceLinks.indexOf(t.link)||-1!==e.node.targetLinks.indexOf(t.link)}}function v(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(y.bind(0,e,r,!1))}function g(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(b.bind(0,e,r,!1))}function y(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",.4),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",.4),r&&f(e,t).selectAll("."+l.sankeyNode).filter(m(t)).call(v)}function b(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",function(t){return t.tinyColorAlpha}),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",function(t){return t.tinyColorAlpha}),r&&f(e,t).selectAll(l.sankeyNode).filter(m(t)).call(g)}function x(t,e){var r=t.hoverlabel||{},n=s.nestedProperty(r,e).get();return!Array.isArray(n)&&n}e.exports=function(t,e){var r=t._fullLayout,s=r._paper,f=r._size,p=c(t,"source:")+" ",m=c(t,"target:")+" ",_=c(t,"incoming flow count:")+" ",w=c(t,"outgoing flow count:")+" ";i(s,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{linkEvents:{hover:function(e,r,i){n.select(e).call(y.bind(0,r,i,!0)),t.emit("plotly_hover",{event:n.event,points:[r.link]})},follow:function(e,i){var s=i.link.trace,l=t._fullLayout._paperdiv.node().getBoundingClientRect(),c=e.getBoundingClientRect(),f=c.left+c.width/2,v=c.top+c.height/2,g=a.loneHover({x:f-l.left,y:v-l.top,name:n.format(i.valueFormat)(i.link.value)+i.valueSuffix,text:[i.link.label||"",p+i.link.source.label,m+i.link.target.label].filter(u).join("<br>"),color:x(s,"bgcolor")||o.addOpacity(i.tinyColorHue,1),borderColor:x(s,"bordercolor"),fontFamily:x(s,"font.family"),fontSize:x(s,"font.size"),fontColor:x(s,"font.color"),idealAlign:n.event.x<f?"right":"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.65),d(g)},unhover:function(e,i,o){n.select(e).call(b.bind(0,i,o,!0)),t.emit("plotly_unhover",{event:n.event,points:[i.link]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r){var i=r.link;i.originalEvent=n.event,t._hoverdata=[i],a.click(t,{target:!0})}},nodeEvents:{hover:function(e,r,i){n.select(e).call(v,r,i),t.emit("plotly_hover",{event:n.event,points:[r.node]})},follow:function(e,i){var o=i.node.trace,s=n.select(e).select("."+l.nodeRect),c=t._fullLayout._paperdiv.node().getBoundingClientRect(),f=s.node().getBoundingClientRect(),p=f.left-2-c.left,m=f.right+2-c.left,v=f.top+f.height/4-c.top,g=a.loneHover({x0:p,x1:m,y:v,name:n.format(i.valueFormat)(i.node.value)+i.valueSuffix,text:[i.node.label,_+i.node.targetLinks.length,w+i.node.sourceLinks.length].filter(u).join("<br>"),color:x(o,"bgcolor")||i.tinyColorHue,borderColor:x(o,"bordercolor"),fontFamily:x(o,"font.family"),fontSize:x(o,"font.size"),fontColor:x(o,"font.color"),idealAlign:"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.85),d(g)},unhover:function(e,i,o){n.select(e).call(g,i,o),t.emit("plotly_unhover",{event:n.event,points:[i.node]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r,i){var o=r.node;o.originalEvent=n.event,t._hoverdata=[o],n.select(e).call(g,r,i),a.click(t,{target:!0})}}})}},{"../../components/color":598,"../../components/fx":640,"../../lib":724,"./constants":1042,"./render":1046,d3:128}],1046:[function(t,e,r){"use strict";var n=t("./constants"),i=t("d3"),a=t("tinycolor2"),o=t("../../components/color"),s=t("../../components/drawing"),l=t("@plotly/d3-sankey").sankey,c=t("d3-force"),u=t("../../lib"),f=t("../../lib/gup").keyFun,h=t("../../lib/gup").repeat,d=t("../../lib/gup").unwrap;function p(t){t.lastDraggedX=t.x,t.lastDraggedY=t.y}function m(t){return function(e){return e.node.originalX===t.node.originalX}}function v(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y+t[e].dy/2}function g(t){t.attr("transform",function(t){return"translate("+t.node.x.toFixed(3)+", "+(t.node.y-t.node.dy/2).toFixed(3)+")"})}function y(t){var e=t.sankey.nodes();!function(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y-t[e].dy/2}(e);var r=t.sankey.link()(t.link);return v(e),r}function b(t){t.call(g)}function x(t,e){t.call(b),e.attr("d",y)}function _(t){t.attr("width",function(t){return t.visibleWidth}).attr("height",function(t){return t.visibleHeight})}function w(t){return t.link.dy>1||t.linkLineWidth>0}function M(t){return"translate("+t.translateX+","+t.translateY+")"+(t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)")}function k(t){return"translate("+(t.horizontal?0:t.labelY)+" "+(t.horizontal?t.labelY:0)+")"}function A(t){return i.svg.line()([[t.horizontal?t.left?-t.sizeAcross:t.visibleWidth+n.nodeTextOffsetHorizontal:n.nodeTextOffsetHorizontal,0],[t.horizontal?t.left?-n.nodeTextOffsetHorizontal:t.sizeAcross:t.visibleHeight-n.nodeTextOffsetHorizontal,0]])}function T(t){return t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)"}function E(t){return t.horizontal?"scale(1 1)":"scale(-1 1)"}function S(t){return t.darkBackground&&!t.horizontal?"rgb(255,255,255)":"rgb(0,0,0)"}function L(t){return t.horizontal&&t.left?"100%":"0%"}function C(t,e,r){t.on(".basic",null).on("mouseover.basic",function(t){t.interactionState.dragInProgress||(r.hover(this,t,e),t.interactionState.hovered=[this,t])}).on("mousemove.basic",function(t){t.interactionState.dragInProgress||(r.follow(this,t),t.interactionState.hovered=[this,t])}).on("mouseout.basic",function(t){t.interactionState.dragInProgress||(r.unhover(this,t,e),t.interactionState.hovered=!1)}).on("click.basic",function(t){t.interactionState.hovered&&(r.unhover(this,t,e),t.interactionState.hovered=!1),t.interactionState.dragInProgress||r.select(this,t,e)})}function P(t,e,r){var a=i.behavior.drag().origin(function(t){return t.node}).on("dragstart",function(i){if("fixed"!==i.arrangement&&(u.raiseToTop(this),i.interactionState.dragInProgress=i.node,p(i.node),i.interactionState.hovered&&(r.nodeEvents.unhover.apply(0,i.interactionState.hovered),i.interactionState.hovered=!1),"snap"===i.arrangement)){var a=i.traceId+"|"+Math.floor(i.node.originalX);i.forceLayouts[a]?i.forceLayouts[a].alpha(1):function(t,e,r){var i=r.sankey.nodes().filter(function(t){return t.originalX===r.node.originalX});r.forceLayouts[e]=c.forceSimulation(i).alphaDecay(0).force("collide",c.forceCollide().radius(function(t){return t.dy/2+r.nodePad/2}).strength(1).iterations(n.forceIterations)).force("constrain",function(t,e,r,i){return function(){for(var t=0,a=0;a<r.length;a++){var o=r[a];o===i.interactionState.dragInProgress?(o.x=o.lastDraggedX,o.y=o.lastDraggedY):(o.vx=(o.originalX-o.x)/n.forceTicksPerFrame,o.y=Math.min(i.size-o.dy/2,Math.max(o.dy/2,o.y))),t=Math.max(t,Math.abs(o.vx),Math.abs(o.vy))}!i.interactionState.dragInProgress&&t<.1&&i.forceLayouts[e].alpha()>0&&i.forceLayouts[e].alpha(0)}}(0,e,i,r)).stop()}(0,a,i),function(t,e,r,i){window.requestAnimationFrame(function a(){for(var o=0;o<n.forceTicksPerFrame;o++)r.forceLayouts[i].tick();r.sankey.relayout(),x(t.filter(m(r)),e),r.forceLayouts[i].alpha()>0&&window.requestAnimationFrame(a)})}(t,e,i,a)}}).on("drag",function(r){if("fixed"!==r.arrangement){var n=i.event.x,a=i.event.y;"snap"===r.arrangement?(r.node.x=n,r.node.y=a):("freeform"===r.arrangement&&(r.node.x=n),r.node.y=Math.max(r.node.dy/2,Math.min(r.size-r.node.dy/2,a))),p(r.node),"snap"!==r.arrangement&&(r.sankey.relayout(),x(t.filter(m(r)),e))}}).on("dragend",function(t){t.interactionState.dragInProgress=!1});t.on(".drag",null).call(a)}e.exports=function(t,e,r,i){var c=t.selectAll("."+n.cn.sankey).data(e.filter(function(t){return d(t).trace.visible}).map(function(t,e,r){for(var i,a=d(e).trace,o=a.domain,s=a.node,c=a.link,f=a.arrangement,h="h"===a.orientation,p=a.node.pad,m=a.node.thickness,g=a.node.line.color,y=a.node.line.width,b=a.link.line.color,x=a.link.line.width,_=a.valueformat,w=a.valuesuffix,M=a.textfont,k=t.width*(o.x[1]-o.x[0]),A=t.height*(o.y[1]-o.y[0]),T=s.label.map(function(t,e){return{pointNumber:e,label:t,color:u.isArray(s.color)?s.color[e]:s.color}}),E=c.value.map(function(t,e){return{pointNumber:e,label:c.label[e],color:u.isArray(c.color)?c.color[e]:c.color,source:c.source[e],target:c.target[e],value:t}}),S=l().size(h?[k,A]:[A,k]).nodeWidth(m).nodePadding(p).nodes(T).links(E).layout(n.sankeyIterations),L=S.nodes(),C=0;C<L.length;C++)(i=L[C]).width=k,i.height=A;return v(T),{key:r,trace:a,guid:Math.floor(1e12*(1+Math.random())),horizontal:h,width:k,height:A,nodePad:p,nodeLineColor:g,nodeLineWidth:y,linkLineColor:b,linkLineWidth:x,valueFormat:_,valueSuffix:w,textFont:M,translateX:o.x[0]*k+t.margin.l,translateY:t.height-o.y[1]*t.height+t.margin.t,dragParallel:h?A:k,dragPerpendicular:h?k:A,nodes:T,links:E,arrangement:f,sankey:S,forceLayouts:{},interactionState:{dragInProgress:!1,hovered:!1}}}.bind(null,r)),f);c.exit().remove(),c.enter().append("g").classed(n.cn.sankey,!0).style("box-sizing","content-box").style("position","absolute").style("left",0).style("shape-rendering","geometricPrecision").style("pointer-events","auto").style("box-sizing","content-box").attr("transform",M),c.transition().ease(n.ease).duration(n.duration).attr("transform",M);var p=c.selectAll("."+n.cn.sankeyLinks).data(h,f);p.enter().append("g").classed(n.cn.sankeyLinks,!0).style("fill","none");var m=p.selectAll("."+n.cn.sankeyLink).data(function(t){return t.sankey.links().filter(function(t){return t.value}).map(function(t,e,r){var n=a(r.color),i=r.source.label+"|"+r.target.label,s=t[i];t[i]=(s||0)+1;var l=i+"__"+t[i];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:l,traceId:e.key,link:r,tinyColorHue:o.tinyRGB(n),tinyColorAlpha:n.getAlpha(),linkLineColor:e.linkLineColor,linkLineWidth:e.linkLineWidth,valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,interactionState:e.interactionState}}.bind(null,{},t))},f);m.enter().append("path").classed(n.cn.sankeyLink,!0).attr("d",y).call(C,c,i.linkEvents),m.style("stroke",function(t){return w(t)?o.tinyRGB(a(t.linkLineColor)):t.tinyColorHue}).style("stroke-opacity",function(t){return w(t)?o.opacity(t.linkLineColor):t.tinyColorAlpha}).style("stroke-width",function(t){return w(t)?t.linkLineWidth:1}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),m.transition().ease(n.ease).duration(n.duration).attr("d",y),m.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var b=c.selectAll("."+n.cn.sankeyNodeSet).data(h,f);b.enter().append("g").classed(n.cn.sankeyNodeSet,!0),b.style("cursor",function(t){switch(t.arrangement){case"fixed":return"default";case"perpendicular":return"ns-resize";default:return"move"}});var x=b.selectAll("."+n.cn.sankeyNode).data(function(t){var e=t.sankey.nodes();return function(t){var e,r=[];for(e=0;e<t.length;e++)t[e].originalX=t[e].x,t[e].originalY=t[e].y,-1===r.indexOf(t[e].x)&&r.push(t[e].x);for(r.sort(function(t,e){return t-e}),e=0;e<t.length;e++)t[e].originalLayerIndex=r.indexOf(t[e].originalX),t[e].originalLayer=t[e].originalLayerIndex/(r.length-1)}(e),e.filter(function(t){return t.value}).map(function(t,e,r){var i=a(r.color),s=n.nodePadAcross,l=e.nodePad/2,c=r.dx,u=Math.max(.5,r.dy),f=r.label,h=t[f];t[f]=(h||0)+1;var d=f+"__"+t[f];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:d,traceId:e.key,node:r,nodePad:e.nodePad,nodeLineColor:e.nodeLineColor,nodeLineWidth:e.nodeLineWidth,textFont:e.textFont,size:e.horizontal?e.height:e.width,visibleWidth:Math.ceil(c),visibleHeight:u,zoneX:-s,zoneY:-l,zoneWidth:c+2*s,zoneHeight:u+2*l,labelY:e.horizontal?r.dy/2+1:r.dx/2+1,left:1===r.originalLayer,sizeAcross:e.width,forceLayouts:e.forceLayouts,horizontal:e.horizontal,darkBackground:i.getBrightness()<=128,tinyColorHue:o.tinyRGB(i),tinyColorAlpha:i.getAlpha(),valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,arrangement:e.arrangement,uniqueNodeLabelPathId:[e.guid,e.key,d].join(" "),interactionState:e.interactionState}}.bind(null,{},t))},f);x.enter().append("g").classed(n.cn.sankeyNode,!0).call(g).call(C,c,i.nodeEvents),x.call(P,m,i),x.transition().ease(n.ease).duration(n.duration).call(g),x.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var z=x.selectAll("."+n.cn.nodeRect).data(h);z.enter().append("rect").classed(n.cn.nodeRect,!0).call(_),z.style("stroke-width",function(t){return t.nodeLineWidth}).style("stroke",function(t){return o.tinyRGB(a(t.nodeLineColor))}).style("stroke-opacity",function(t){return o.opacity(t.nodeLineColor)}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),z.transition().ease(n.ease).duration(n.duration).call(_);var O=x.selectAll("."+n.cn.nodeCapture).data(h);O.enter().append("rect").classed(n.cn.nodeCapture,!0).style("fill-opacity",0),O.attr("x",function(t){return t.zoneX}).attr("y",function(t){return t.zoneY}).attr("width",function(t){return t.zoneWidth}).attr("height",function(t){return t.zoneHeight});var D=x.selectAll("."+n.cn.nodeCentered).data(h);D.enter().append("g").classed(n.cn.nodeCentered,!0).attr("transform",k),D.transition().ease(n.ease).duration(n.duration).attr("transform",k);var I=D.selectAll("."+n.cn.nodeLabelGuide).data(h);I.enter().append("path").classed(n.cn.nodeLabelGuide,!0).attr("id",function(t){return t.uniqueNodeLabelPathId}).attr("d",A).attr("transform",T),I.transition().ease(n.ease).duration(n.duration).attr("d",A).attr("transform",T);var R=D.selectAll("."+n.cn.nodeLabel).data(h);R.enter().append("text").classed(n.cn.nodeLabel,!0).attr("transform",E).style("user-select","none").style("cursor","default").style("fill","black"),R.style("text-shadow",function(t){return t.horizontal?"-1px 1px 1px #fff, 1px 1px 1px #fff, 1px -1px 1px #fff, -1px -1px 1px #fff":"none"}).each(function(t){s.font(R,t.textFont)}),R.transition().ease(n.ease).duration(n.duration).attr("transform",E);var N=R.selectAll("."+n.cn.nodeLabelTextPath).data(h);N.enter().append("textPath").classed(n.cn.nodeLabelTextPath,!0).attr("alignment-baseline","middle").attr("xlink:href",function(t){return"#"+t.uniqueNodeLabelPathId}).attr("startOffset",L).style("fill",S),N.text(function(t){return t.horizontal||t.node.dy>5?t.node.label:""}).attr("text-anchor",function(t){return t.horizontal&&t.left?"end":"start"}),N.transition().ease(n.ease).duration(n.duration).attr("startOffset",L).style("fill",S)}},{"../../components/color":598,"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1042,"@plotly/d3-sankey":41,d3:128,"d3-force":124,tinycolor2:526}],1047:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){for(var r=0;r<t.length;r++)t[r].i=r;n.mergeArray(e.text,t,"tx"),n.mergeArray(e.hovertext,t,"htx"),n.mergeArray(e.customdata,t,"data"),n.mergeArray(e.textposition,t,"tp"),e.textfont&&(n.mergeArray(e.textfont.size,t,"ts"),n.mergeArray(e.textfont.color,t,"tc"),n.mergeArray(e.textfont.family,t,"tf"));var i=e.marker;if(i){n.mergeArray(i.size,t,"ms"),n.mergeArray(i.opacity,t,"mo"),n.mergeArray(i.symbol,t,"mx"),n.mergeArray(i.color,t,"mc");var a=i.line;i.line&&(n.mergeArray(a.color,t,"mlc"),n.mergeArray(a.width,t,"mlw"));var o=i.gradient;o&&"none"!==o.type&&(n.mergeArray(o.type,t,"mgt"),n.mergeArray(o.color,t,"mgc"))}}},{"../../lib":724}],1048:[function(t,e,r){"use strict";var n=t("../../components/colorscale/color_attributes"),i=t("../../components/errorbars/attributes"),a=t("../../components/colorbar/attributes"),o=t("../../plots/font_attributes"),s=t("../../components/drawing/attributes").dash,l=t("../../components/drawing"),c=(t("./constants"),t("../../lib/extend").extendFlat);e.exports={x:{valType:"data_array",editType:"calc+clearAxisTypes"},x0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dx:{valType:"number",dflt:1,editType:"calc"},y:{valType:"data_array",editType:"calc+clearAxisTypes"},y0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dy:{valType:"number",dflt:1,editType:"calc"},text:{valType:"string",dflt:"",arrayOk:!0,editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},mode:{valType:"flaglist",flags:["lines","markers","text"],extras:["none"],editType:"calc"},hoveron:{valType:"flaglist",flags:["points","fills"],editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},shape:{valType:"enumerated",values:["linear","spline","hv","vh","hvh","vhv"],dflt:"linear",editType:"plot"},smoothing:{valType:"number",min:0,max:1.3,dflt:1,editType:"plot"},dash:c({},s,{editType:"style"}),simplify:{valType:"boolean",dflt:!0,editType:"plot"},editType:"plot"},connectgaps:{valType:"boolean",dflt:!1,editType:"calc"},cliponaxis:{valType:"boolean",dflt:!0,editType:"plot"},fill:{valType:"enumerated",values:["none","tozeroy","tozerox","tonexty","tonextx","toself","tonext"],dflt:"none",editType:"calc"},fillcolor:{valType:"color",editType:"style"},marker:c({symbol:{valType:"enumerated",values:l.symbolList,dflt:"circle",arrayOk:!0,editType:"style"},opacity:{valType:"number",min:0,max:1,arrayOk:!0,editType:"style"},size:{valType:"number",min:0,dflt:6,arrayOk:!0,editType:"calcIfAutorange"},maxdisplayed:{valType:"number",min:0,dflt:0,editType:"plot"},sizeref:{valType:"number",dflt:1,editType:"calc"},sizemin:{valType:"number",min:0,dflt:0,editType:"calc"},sizemode:{valType:"enumerated",values:["diameter","area"],dflt:"diameter",editType:"calc"},showscale:{valType:"boolean",dflt:!1,editType:"calc"},colorbar:a,line:c({width:{valType:"number",min:0,arrayOk:!0,editType:"style"},editType:"calc"},n("marker.line")),gradient:{type:{valType:"enumerated",values:["radial","horizontal","vertical","none"],arrayOk:!0,dflt:"none",editType:"calc"},color:{valType:"color",arrayOk:!0,editType:"calc"},editType:"calc"},editType:"calc"},n("marker")),selected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},unselected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},textposition:{valType:"enumerated",values:["top left","top center","top right","middle left","middle center","middle right","bottom left","bottom center","bottom right"],dflt:"middle center",arrayOk:!0,editType:"calc"},textfont:o({editType:"calc",colorEditType:"style",arrayOk:!0}),r:{valType:"data_array",editType:"calc"},t:{valType:"data_array",editType:"calc"},error_y:i,error_x:i}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../components/drawing":623,"../../components/drawing/attributes":622,"../../components/errorbars/attributes":625,"../../lib/extend":713,"../../plots/font_attributes":797,"./constants":1054}],1049:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("./subtypes"),s=t("./colorscale_calc"),l=t("./arrays_to_calcdata"),c=t("./calc_selection");function u(t,e){if(o.hasMarkers(t)){var r,n=t.marker,a=1.6*(t.marker.sizeref||1);if(r="area"===t.marker.sizemode?function(t){return Math.max(Math.sqrt((t||0)/a),3)}:function(t){return Math.max((t||0)/a,3)},Array.isArray(n.size)){var s={type:"linear"};i.setConvert(s);for(var l=s.makeCalcdata(t.marker,"size"),c=new Array(e),u=0;u<e;u++)c[u]=r(l[u]);return c}return r(n.size)}}e.exports={calc:function(t,e){var r=i.getFromId(t,e.xaxis||"x"),f=i.getFromId(t,e.yaxis||"y"),h=r.makeCalcdata(e,"x"),d=f.makeCalcdata(e,"y"),p=e._length;r._minDtick=0,f._minDtick=0;var m={padded:!0},v={padded:!0},g=u(e,p);g&&(m.ppad=v.ppad=g),!("tozerox"===e.fill||"tonextx"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?e.error_y.visible||-1===["tonexty","tozeroy"].indexOf(e.fill)&&(o.hasMarkers(e)||o.hasText(e))||(m.padded=!1,m.ppad=0):m.tozero=!0,!("tozeroy"===e.fill||"tonexty"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?-1!==["tonextx","tozerox"].indexOf(e.fill)&&(v.padded=!1):v.tozero=!0,i.expand(r,h,m),i.expand(f,d,v);for(var y=new Array(p),b=0;b<p;b++)y[b]=n(h[b])&&n(d[b])?{x:h[b],y:d[b]}:{x:a,y:a},e.ids&&(y[b].id=String(e.ids[b]));return l(y,e),s(e),c(y,e),t.firstscatter=!1,y},calcMarkerSize:u}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"./arrays_to_calcdata":1047,"./calc_selection":1050,"./colorscale_calc":1053,"./subtypes":1070,"fast-isnumeric":140}],1050:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){Array.isArray(e.selectedpoints)&&n.tagSelected(t,e)}},{"../../lib":724}],1051:[function(t,e,r){"use strict";e.exports=function(t){for(var e=0;e<t.length;e++){var r=t[e];if("scatter"===r.type){var n=r.fill;if("none"!==n&&"toself"!==n&&(r.opacity=void 0,"tonexty"===n||"tonextx"===n))for(var i=e-1;i>=0;i--){var a=t[i];if("scatter"===a.type&&a.xaxis===r.xaxis&&a.yaxis===r.yaxis){a.opacity=void 0;break}}}}}},{}],1052:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib"),a=t("../../plots/plots"),o=t("../../components/colorscale"),s=t("../../components/colorbar/draw");e.exports=function(t,e){var r=e[0].trace,l=r.marker,c="cb"+r.uid;if(t._fullLayout._infolayer.selectAll("."+c).remove(),void 0!==l&&l.showscale){var u=l.color,f=l.cmin,h=l.cmax;n(f)||(f=i.aggNums(Math.min,null,u)),n(h)||(h=i.aggNums(Math.max,null,u));var d=e[0].t.cb=s(t,c),p=o.makeColorScaleFunc(o.extractScale(l.colorscale,f,h),{noNumericCheck:!0});d.fillcolor(p).filllevels({start:f,end:h,size:(h-f)/254}).options(l.colorbar)()}else a.autoMargin(t,c)}},{"../../components/colorbar/draw":602,"../../components/colorscale":613,"../../lib":724,"../../plots/plots":833,"fast-isnumeric":140}],1053:[function(t,e,r){"use strict";var n=t("../../components/colorscale/has_colorscale"),i=t("../../components/colorscale/calc"),a=t("./subtypes");e.exports=function(t){a.hasLines(t)&&n(t,"line")&&i(t,t.line.color,"line","c"),a.hasMarkers(t)&&(n(t,"marker")&&i(t,t.marker.color,"marker","c"),n(t,"marker.line")&&i(t,t.marker.line.color,"marker.line","c"))}},{"../../components/colorscale/calc":605,"../../components/colorscale/has_colorscale":612,"./subtypes":1070}],1054:[function(t,e,r){"use strict";e.exports={PTS_LINESONLY:20,minTolerance:.2,toleranceGrowth:10,maxScreensAway:20}},{}],1055:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("./constants"),o=t("./subtypes"),s=t("./xy_defaults"),l=t("./marker_defaults"),c=t("./line_defaults"),u=t("./line_shape_defaults"),f=t("./text_defaults"),h=t("./fillcolor_defaults"),d=t("../../components/errorbars/defaults");e.exports=function(t,e,r,p){function m(r,a){return n.coerce(t,e,i,r,a)}var v=s(t,e,p,m),g=v<a.PTS_LINESONLY?"lines+markers":"lines";if(v){m("text"),m("hovertext"),m("mode",g),o.hasLines(e)&&(c(t,e,r,p,m),u(t,e,m),m("connectgaps"),m("line.simplify")),o.hasMarkers(e)&&l(t,e,r,p,m,{gradient:!0}),o.hasText(e)&&f(t,e,p,m);var y=[];(o.hasMarkers(e)||o.hasText(e))&&(m("cliponaxis"),m("marker.maxdisplayed"),y.push("points")),m("fill"),"none"!==e.fill&&(h(t,e,r,m),o.hasLines(e)||u(t,e,m)),"tonext"!==e.fill&&"toself"!==e.fill||y.push("fills"),m("hoveron",y.join("+")||"points"),d(t,e,r,{axis:"y"}),d(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,m)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"./attributes":1048,"./constants":1054,"./fillcolor_defaults":1057,"./line_defaults":1061,"./line_shape_defaults":1063,"./marker_defaults":1066,"./subtypes":1070,"./text_defaults":1071,"./xy_defaults":1072}],1056:[function(t,e,r){"use strict";var n=t("../../lib");function i(t){return t||0===t}e.exports=function(t,e,r){var a=Array.isArray(r)?function(t){r.push(t)}:function(t){r.text=t},o=n.extractOption(t,e,"htx","hovertext");if(i(o))return a(o);var s=n.extractOption(t,e,"tx","text");return i(s)?a(s):void 0}},{"../../lib":724}],1057:[function(t,e,r){"use strict";var n=t("../../components/color");e.exports=function(t,e,r,i){var a=!1;if(e.marker){var o=e.marker.color,s=(e.marker.line||{}).color;o&&!Array.isArray(o)?a=o:s&&!Array.isArray(s)&&(a=s)}i("fillcolor",n.addOpacity((e.line||{}).color||a||r,.5))}},{"../../components/color":598}],1058:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./subtypes");e.exports=function(t,e){var r,a;if("lines"===t.mode)return(r=t.line.color)&&n.opacity(r)?r:t.fillcolor;if("none"===t.mode)return t.fill?t.fillcolor:"";var o=e.mcc||(t.marker||{}).color,s=e.mlcc||((t.marker||{}).line||{}).color;return(a=o&&n.opacity(o)?o:s&&n.opacity(s)&&(e.mlw||((t.marker||{}).line||{}).width)?s:"")?n.opacity(a)<.3?n.addOpacity(a,.3):a:(r=(t.line||{}).color)&&n.opacity(r)&&i.hasLines(t)&&t.line.width?r:t.fillcolor}},{"../../components/color":598,"./subtypes":1070}],1059:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/fx"),a=t("../../components/errorbars"),o=t("./get_trace_color"),s=t("../../components/color"),l=t("./fill_hover_text"),c=i.constants.MAXDIST;e.exports=function(t,e,r,u){var f=t.cd,h=f[0].trace,d=t.xa,p=t.ya,m=d.c2p(e),v=p.c2p(r),g=[m,v],y=h.hoveron||"",b=-1!==h.mode.indexOf("markers")?3:.5;if(-1!==y.indexOf("points")){var x=i.getDistanceFunction(u,function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(d.c2p(t.x)-m);return n<e?r*n/e:n-e+r},function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(p.c2p(t.y)-v);return n<e?r*n/e:n-e+r},function(t){var 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s.opacity(h.fillcolor)?V=h.fillcolor:s.opacity((h.line||{}).color)&&(V=h.line.color),n.extendFlat(t,{distance:c+10,x0:N,x1:F,y0:U,y1:U,color:V}),delete t.index,h.text&&!Array.isArray(h.text)?t.text=String(h.text):t.text=h.name,[t]}}}},{"../../components/color":598,"../../components/errorbars":629,"../../components/fx":640,"../../lib":724,"./fill_hover_text":1056,"./get_trace_color":1058}],1060:[function(t,e,r){"use strict";var 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r=[i(t.x,t.error_x,e[0]),i(t.y,t.error_y,e[1]),i(t.z,t.error_z,e[2])],n=function(t){for(var e=0;e<t.length;e++)if(t[e])return t[e].length;return 0}(r);if(0===n)return null;for(var a=new Array(n),o=0;o<n;o++){for(var s=[[0,0,0],[0,0,0]],l=0;l<3;l++)if(r[l])for(var c=0;c<2;c++)s[c][l]=r[l][o][c];a[o]=s}return a}},{"../../components/errorbars/compute_error":627}],1076:[function(t,e,r){"use strict";var n=t("gl-line3d"),i=t("gl-scatter3d"),a=t("gl-error3d"),o=t("gl-mesh3d"),s=t("delaunay-triangulate"),l=t("../../lib"),c=t("../../lib/str2rgbarray"),u=t("../../lib/gl_format_color"),f=t("../scatter/make_bubble_size_func"),h=t("../../constants/gl3d_dashes"),d=t("../../constants/gl3d_markers"),p=t("./calc_errors");function m(t,e){this.scene=t,this.uid=e,this.linePlot=null,this.scatterPlot=null,this.errorBars=null,this.textMarkers=null,this.delaunayMesh=null,this.color=null,this.mode="",this.dataPoints=[],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.textLabels=null,this.data=null}var 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m=function(t,e,r){var n,i=(r+1)%3,a=(r+2)%3,o=[],l=[];for(n=0;n<t.length;++n){var c=t[n];!isNaN(c[i])&&isFinite(c[i])&&!isNaN(c[a])&&isFinite(c[a])&&(o.push([c[i],c[a]]),l.push(n))}var u=s(o);for(n=0;n<u.length;++n)for(var f=u[n],h=0;h<f.length;++h)f[h]=l[f[h]];return{positions:t,cells:u,meshColor:e}}(d.position,d.delaunayColor,d.delaunayAxis);m.opacity=t.opacity,this.delaunayMesh?this.delaunayMesh.update(m):(m.gl=u,this.delaunayMesh=o(m),this.delaunayMesh._trace=this,this.scene.glplot.add(this.delaunayMesh))}else 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n=t("../../registry"),i=t("../../lib"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/text_defaults"),c=t("../../components/errorbars/defaults"),u=t("./attributes");e.exports=function(t,e,r,f){function h(r,n){return i.coerce(t,e,u,r,n)}if(function(t,e,r,i){var a=0,o=r("x"),s=r("y"),l=r("z");n.getComponentMethod("calendars","handleTraceDefaults")(t,e,["x","y","z"],i),o&&s&&l&&(a=Math.min(o.length,s.length,l.length),e._xlength=e._ylength=e._zlength=a);return a}(t,e,h,f)){h("text"),h("hovertext"),h("mode"),a.hasLines(e)&&(h("connectgaps"),s(t,e,r,f,h)),a.hasMarkers(e)&&o(t,e,r,f,h,{noSelect:!0}),a.hasText(e)&&l(t,e,f,h,{noSelect:!0});var d=(e.line||{}).color,p=(e.marker||{}).color;h("surfaceaxis")>=0&&h("surfacecolor",d||p);for(var m=["x","y","z"],v=0;v<3;++v){var g="projection."+m[v];h(g+".show")&&(h(g+".opacity"),h(g+".scale"))}c(t,e,r,{axis:"z"}),c(t,e,r,{axis:"y",inherit:"z"}),c(t,e,r,{axis:"x",inherit:"z"})}else 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n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/colorbar/attributes"),s=t("../../lib/extend").extendFlat,l=n.marker,c=n.line,u=l.line;e.exports={carpet:{valType:"string",editType:"calc"},a:{valType:"data_array",editType:"calc"},b:{valType:"data_array",editType:"calc"},mode:s({},n.mode,{dflt:"markers"}),text:s({},n.text,{}),line:{color:c.color,width:c.width,dash:c.dash,shape:s({},c.shape,{values:["linear","spline"]}),smoothing:c.smoothing,editType:"calc"},connectgaps:n.connectgaps,fill:s({},n.fill,{values:["none","toself","tonext"]}),fillcolor:n.fillcolor,marker:s({symbol:l.symbol,opacity:l.opacity,maxdisplayed:l.maxdisplayed,size:l.size,sizeref:l.sizeref,sizemin:l.sizemin,sizemode:l.sizemode,line:s({width:u.width,editType:"calc"},a("marker".line)),gradient:l.gradient,editType:"calc"},a("marker"),{showscale:l.showscale,colorbar:o}),textfont:n.textfont,textposition:n.textposition,selected:n.selected,unselected:n.unselected,hoverinfo:s({},i.hoverinfo,{flags:["a","b","text","name"]}),hoveron:n.hoveron}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1080:[function(t,e,r){"use 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n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/line_shape_defaults"),c=t("../scatter/text_defaults"),u=t("../scatter/fillcolor_defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}d("carpet"),e.xaxis="x",e.yaxis="y";var p,m=d("a"),v=d("b");if(p=Math.min(m.length,v.length)){m&&p<m.length&&(e.a=m.slice(0,p)),v&&p<v.length&&(e.b=v.slice(0,p)),d("text"),d("mode",p<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(s(t,e,r,h,d),l(t,e,d),d("connectgaps")),a.hasMarkers(e)&&o(t,e,r,h,d,{gradient:!0}),a.hasText(e)&&c(t,e,h,d);var g=[];(a.hasMarkers(e)||a.hasText(e))&&(d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(u(t,e,r,d),a.hasLines(e)||l(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1079}],1082:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){var a=n[i];return t.a=a.a,t.b=a.b,t}},{}],1083:[function(t,e,r){"use strict";var n=t("../scatter/hover");e.exports=function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var o=a[0];if(void 0===o.index){var s=1-o.y0/t.ya._length,l=t.xa._length,c=l*s/2,u=l-c;return o.x0=Math.max(Math.min(o.x0,u),c),o.x1=Math.max(Math.min(o.x1,u),c),a}var f=o.cd[o.index];o.a=f.a,o.b=f.b,o.xLabelVal=void 0,o.yLabelVal=void 0;var h=o.trace,d=h._carpet,p=(f.hi||h.hoverinfo).split("+"),m=[];-1!==p.indexOf("all")&&(p=["a","b"]),-1!==p.indexOf("a")&&w(d.aaxis,f.a),-1!==p.indexOf("b")&&w(d.baxis,f.b);var v=d.ab2ij([f.a,f.b]),g=Math.floor(v[0]),y=v[0]-g,b=Math.floor(v[1]),x=v[1]-b,_=d.evalxy([],g,b,y,x);return m.push("y: "+_[1].toFixed(3)),o.extraText=m.join("<br>"),a}function w(t,e){var r;r=t.labelprefix&&t.labelprefix.length>0?t.labelprefix.replace(/ = $/,""):t._hovertitle,m.push(r+": "+e.toFixed(3)+t.labelsuffix)}}},{"../scatter/hover":1059}],1084:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("../scatter/style").style,n.hoverPoints=t("./hover"),n.selectPoints=t("../scatter/select"),n.eventData=t("./event_data"),n.moduleType="trace",n.name="scattercarpet",n.basePlotModule=t("../../plots/cartesian"),n.categories=["carpet","symbols","markerColorscale","showLegend","carpetDependent"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"../scatter/colorbar":1052,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1079,"./calc":1080,"./defaults":1081,"./event_data":1082,"./hover":1083,"./plot":1085}],1085:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../plots/cartesian/axes"),a=t("../../components/drawing");e.exports=function(t,e,r){var o,s,l,c=r[0][0].carpet,u={xaxis:i.getFromId(t,c.xaxis||"x"),yaxis:i.getFromId(t,c.yaxis||"y"),plot:e.plot};for(n(t,u,r),o=0;o<r.length;o++)s=r[o][0].trace,l=u.plot.selectAll("g.trace"+s.uid+" .js-line"),a.setClipUrl(l,c._clipPathId)}},{"../../components/drawing":623,"../../plots/cartesian/axes":770,"../scatter/plot":1067}],1086:[function(t,e,r){"use strict";var n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/drawing/attributes").dash,s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=n.marker,u=n.line,f=c.line;e.exports=l({lon:{valType:"data_array"},lat:{valType:"data_array"},locations:{valType:"data_array"},locationmode:{valType:"enumerated",values:["ISO-3","USA-states","country 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n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../scatter/colorscale_calc"),o=t("../scatter/arrays_to_calcdata"),s=t("../scatter/calc_selection"),l=t("../../lib")._;e.exports=function(t,e){for(var r=Array.isArray(e.locations),c=r?e.locations.length:e._length,u=new Array(c),f=0;f<c;f++){var h=u[f]={};if(r){var d=e.locations[f];h.loc="string"==typeof d?d:null}else{var p=e.lon[f],m=e.lat[f];n(p)&&n(m)?h.lonlat=[+p,+m]:h.lonlat=[i,i]}}return o(u,e),a(e),s(u,e),c&&(u[0].t={labels:{lat:l(t,"lat:")+" ",lon:l(t,"lon:")+" "}}),u}},{"../../constants/numerical":702,"../../lib":724,"../scatter/arrays_to_calcdata":1047,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1088:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/text_defaults"),l=t("../scatter/fillcolor_defaults"),c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}!function(t,e,r){var n,i,a=0,o=r("locations");if(o)return r("locationmode"),a=o.length;return n=r("lon")||[],i=r("lat")||[],a=Math.min(n.length,i.length),e._length=a,a}(0,e,f)?e.visible=!1:(f("text"),f("hovertext"),f("mode"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps")),i.hasMarkers(e)&&a(t,e,r,u,f,{gradient:!0}),i.hasText(e)&&s(t,e,u,f),f("fill"),"none"!==e.fill&&l(t,e,r,f))}},{"../../lib":724,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1086}],1089:[function(t,e,r){"use strict";e.exports=function(t,e){return t.lon=e.lon,t.lat=e.lat,t.location=e.loc?e.loc:null,t}},{}],1090:[function(t,e,r){"use strict";var n=t("../../components/fx"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("../scatter/get_trace_color"),s=t("../scatter/fill_hover_text"),l=t("./attributes");e.exports=function(t,e,r){var c=t.cd,u=c[0].trace,f=t.xa,h=t.ya,d=t.subplot,p=d.projection.isLonLatOverEdges,m=d.project;if(n.getClosest(c,function(t){var n=t.lonlat;if(n[0]===a)return 1/0;if(p(n))return 1/0;var i=m(n),o=m([e,r]),s=Math.abs(i[0]-o[0]),l=Math.abs(i[1]-o[1]),c=Math.max(3,t.mrc||0);return Math.max(Math.sqrt(s*s+l*l)-c,1-3/c)},t),!1!==t.index){var v=c[t.index],g=v.lonlat,y=[f.c2p(g),h.c2p(g)],b=v.mrc||1;return t.x0=y[0]-b,t.x1=y[0]+b,t.y0=y[1]-b,t.y1=y[1]+b,t.loc=v.loc,t.lon=g[0],t.lat=g[1],t.color=o(u,v),t.extraText=function(t,e,r,n){var a=e.hi||t.hoverinfo,o="all"===a?l.hoverinfo.flags:a.split("+"),c=-1!==o.indexOf("location")&&Array.isArray(t.locations),u=-1!==o.indexOf("lon"),f=-1!==o.indexOf("lat"),h=-1!==o.indexOf("text"),d=[];function p(t){return i.tickText(r,r.c2l(t),"hover").text+"\xb0"}c?d.push(e.loc):u&&f?d.push("("+p(e.lonlat[0])+", "+p(e.lonlat[1])+")"):u?d.push(n.lon+p(e.lonlat[0])):f&&d.push(n.lat+p(e.lonlat[1]));h&&s(e,t,d);return d.join("<br>")}(u,v,d.mockAxis,c[0].t.labels),[t]}}},{"../../components/fx":640,"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/fill_hover_text":1056,"../scatter/get_trace_color":1058,"./attributes":1086}],1091:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.hoverPoints=t("./hover"),n.eventData=t("./event_data"),n.selectPoints=t("./select"),n.moduleType="trace",n.name="scattergeo",n.basePlotModule=t("../../plots/geo"),n.categories=["geo","symbols","markerColorscale","showLegend","scatter-like"],n.meta={},e.exports=n},{"../../plots/geo":801,"../scatter/colorbar":1052,"./attributes":1086,"./calc":1087,"./defaults":1088,"./event_data":1089,"./hover":1090,"./plot":1092,"./select":1093,"./style":1094}],1092:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../../constants/numerical").BADNUM,o=t("../../lib/topojson_utils").getTopojsonFeatures,s=t("../../lib/geo_location_utils").locationToFeature,l=t("../../lib/geojson_utils"),c=t("../scatter/subtypes"),u=t("./style");function f(t,e){var r=t[0].trace;if(Array.isArray(r.locations))for(var n=o(r,e),i=r.locationmode,l=0;l<t.length;l++){var c=t[l],u=s(i,c.loc,n);c.lonlat=u?u.properties.ct:[a,a]}}e.exports=function(t,e,r){for(var o=0;o<r.length;o++)f(r[o],e.topojson);function s(t,e){t.lonlat[0]===a&&n.select(e).remove()}var h=e.layers.frontplot.select(".scatterlayer").selectAll("g.trace.scattergeo").data(r,function(t){return t[0].trace.uid});h.enter().append("g").attr("class","trace scattergeo"),h.exit().remove(),h.selectAll("*").remove(),h.each(function(e){var r=e[0].node3=n.select(this),a=e[0].trace;if(c.hasLines(a)||"none"!==a.fill){var o=l.calcTraceToLineCoords(e),f="none"!==a.fill?l.makePolygon(o):l.makeLine(o);r.selectAll("path.js-line").data([{geojson:f,trace:a}]).enter().append("path").classed("js-line",!0).style("stroke-miterlimit",2)}c.hasMarkers(a)&&r.selectAll("path.point").data(i.identity).enter().append("path").classed("point",!0).each(function(t){s(t,this)}),c.hasText(a)&&r.selectAll("g").data(i.identity).enter().append("g").append("text").each(function(t){s(t,this)}),u(t,e)})}},{"../../constants/numerical":702,"../../lib":724,"../../lib/geo_location_utils":716,"../../lib/geojson_utils":717,"../../lib/topojson_utils":750,"../scatter/subtypes":1070,"./style":1094,d3:128}],1093:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h)&&!n.hasText(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1094:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/drawing"),a=t("../../components/color"),o=t("../scatter/style").stylePoints;e.exports=function(t,e){e&&function(t,e){var r=e[0].trace,s=e[0].node3;s.style("opacity",e[0].trace.opacity),o(s,r,t),s.selectAll("path.js-line").style("fill","none").each(function(t){var e=n.select(this),r=t.trace,o=r.line||{};e.call(a.stroke,o.color).call(i.dashLine,o.dash||"",o.width||0),"none"!==r.fill&&e.call(a.fill,r.fillcolor)})}(t,e)}},{"../../components/color":598,"../../components/drawing":623,"../scatter/style":1069,d3:128}],1095:[function(t,e,r){"use strict";var n=t("../../plots/attributes"),i=t("../scatter/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../constants/gl2d_dashes"),s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=i.line,u=i.marker,f=u.line,h=e.exports=l({x:i.x,x0:i.x0,dx:i.dx,y:i.y,y0:i.y0,dy:i.dy,text:s({},i.text,{}),mode:{valType:"flaglist",flags:["lines","markers"],extras:["none"]},line:{color:c.color,width:c.width,dash:{valType:"enumerated",values:Object.keys(o),dflt:"solid"}},marker:s({},a("marker"),{symbol:u.symbol,size:u.size,sizeref:u.sizeref,sizemin:u.sizemin,sizemode:u.sizemode,opacity:u.opacity,showscale:u.showscale,colorbar:u.colorbar,line:s({},a("marker.line"),{width:f.width})}),connectgaps:i.connectgaps,fill:i.fill,fillcolor:i.fillcolor,hoveron:i.hoveron,selected:{marker:i.selected.marker},unselected:{marker:i.unselected.marker},opacity:s({},n.opacity,{editType:"calc"}),error_y:i.error_y,error_x:i.error_x},"calc","nested");h.x.editType=h.y.editType=h.x0.editType=h.y0.editType="calc+clearAxisTypes"},{"../../components/colorscale/color_attributes":606,"../../constants/gl2d_dashes":698,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../scatter/attributes":1048}],1096:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/xy_defaults"),s=t("../scatter/marker_defaults"),l=t("../scatter/line_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../../components/errorbars/defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=!!t.marker&&/-open/.test(t.marker.symbol),m=a.isBubble(t),v=o(t,e,h,d);if(v){d("text"),d("mode",v<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(d("connectgaps"),l(t,e,r,h,d));var g=[];a.hasMarkers(e)&&(s(t,e,r,h,d),d("marker.line.width",p||m?1:0),g.push("points")),d("fill"),"none"!==e.fill&&c(t,e,r,d),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),u(t,e,r,{axis:"y"}),u(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/xy_defaults":1072,"./attributes":1095}],1097:[function(t,e,r){(function(r){"use strict";var n=t("../../lib"),i=t("../scatter/get_trace_color"),a=t("../../components/errorbars"),o=t("object-assign"),s=t("../../plots/cartesian/axes"),l=t("kdgrass"),c=t("../../components/fx"),u=t("../scatter/subtypes"),f=t("../scatter/colorscale_calc"),h=t("../../components/drawing"),d=t("../scatter/make_bubble_size_func"),p=t("../../constants/gl2d_dashes"),m=t("../../lib/gl_format_color"),v=t("../scatter/link_traces"),g=t("regl-scatter2d"),y=t("regl-line2d"),b=t("regl-error2d"),x=t("color-normalize"),_=t("svg-path-sdf"),w=t("regl"),M=t("array-range"),k=t("../scatter/fill_hover_text"),A=t("fast-isnumeric"),T=c.constants.MAXDIST,E=200,S=20,L=S/20,C={},P=h.symbolFuncs[0](.05*S),z=1e5,O=/-dot/;function D(t,e,r,n){var 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t=this.map;t.removeLayer(this.idLayerFill),t.removeLayer(this.idLayerLine),t.removeLayer(this.idLayerCircle),t.removeLayer(this.idLayerSymbol),t.removeSource(this.idSourceFill),t.removeSource(this.idSourceLine),t.removeSource(this.idSourceCircle),t.removeSource(this.idSourceSymbol)},e.exports=function(t,e){var r=new i(t,e[0].trace.uid);return r.update(e),r}},{"./convert":1099}],1105:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1106:[function(t,e,r){"use strict";var n=t("../../lib/extend").extendFlat,i=t("../scatter/attributes"),a=t("../../plots/attributes"),o=i.line;e.exports={mode:i.mode,r:{valType:"data_array",editType:"calc+clearAxisTypes"},theta:{valType:"data_array",editType:"calc+clearAxisTypes"},thetaunit:{valType:"enumerated",values:["radians","degrees","gradians"],dflt:"degrees",editType:"calc+clearAxisTypes"},text:i.text,hovertext:i.hovertext,line:{color:o.color,width:o.width,dash:o.dash,shape:n({},o.shape,{values:["linear","spline"]}),smoothing:o.smoothing,editType:"calc"},connectgaps:i.connectgaps,marker:i.marker,cliponaxis:n({},i.cliponaxis,{dflt:!1}),textposition:i.textposition,textfont:i.textfont,fill:n({},i.fill,{values:["none","toself","tonext"]}),fillcolor:i.fillcolor,hoverinfo:n({},a.hoverinfo,{flags:["r","theta","text","name"]}),hoveron:i.hoveron,selected:i.selected,unselected:i.unselected}},{"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1107:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../../plots/cartesian/axes"),o=t("../scatter/colorscale_calc"),s=t("../scatter/arrays_to_calcdata"),l=t("../scatter/calc_selection"),c=t("../scatter/calc").calcMarkerSize;e.exports=function(t,e){var r,u=t._fullLayout,f=e.subplot,h=u[f].radialaxis,d=u[f].angularaxis,p=h.makeCalcdata(e,"r"),m=d.makeCalcdata(e,"theta"),v=e._length,g=new Array(v);for(var y=0;y<v;y++){var b=p[y],x=m[y],_=g[y]={};n(b)&&n(x)?(_.r=b,_.theta=x,_.rad=(r=x,d.c2rad(r,e.thetaunit))):_.r=i}var w=c(e,v);return a.expand(h,p,{ppad:w}),"linear"!==d.type&&(d.autorange=!0,a.expand(d,m),delete d.autorange),o(e),s(g,e),l(g,e),g}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/arrays_to_calcdata":1047,"../scatter/calc":1049,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1108:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/line_shape_defaults"),l=t("../scatter/text_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../scatter/constants").PTS_LINESONLY,f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=d("r"),m=d("theta"),v=p&&m?Math.min(p.length,m.length):0;if(v){e._length=v,d("thetaunit"),d("mode",v<u?"lines+markers":"lines"),d("text"),d("hovertext"),i.hasLines(e)&&(o(t,e,r,h,d),s(t,e,d),d("connectgaps")),i.hasMarkers(e)&&a(t,e,r,h,d,{gradient:!0}),i.hasText(e)&&l(t,e,h,d);var g=[];(i.hasMarkers(e)||i.hasText(e))&&(d("cliponaxis"),d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(c(t,e,r,d),i.hasLines(e)||s(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1106}],1109:[function(t,e,r){"use strict";var n=t("../scatter/hover"),i=t("../../plots/cartesian/axes"),a=t("../../lib");function o(t,e,r){var n=r.radialAxis,o=r.angularAxis,s=(t.hi||e.hoverinfo).split("+"),l=[];n._hovertitle="r",o._hovertitle="\u03b8";var c,u=o._c2rad(t.theta,e.thetaunit);function f(t,e){l.push(t._hovertitle+": "+i.tickText(t,e,"hover").text)}return c="linear"===o.type&&e.thetaunit!==o.thetaunit?"degrees"===o.thetaunit?a.rad2deg(u):u:t.theta,-1!==s.indexOf("all")&&(s=["r","theta"]),-1!==s.indexOf("r")&&f(n,n.c2r(t.r)),-1!==s.indexOf("theta")&&f(o,c),l.join("<br>")}e.exports={hoverPoints:function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var s=a[0];if(void 0===s.index)return a;var l=t.subplot,c=s.cd[s.index],u=s.trace;if(l.isPtWithinSector(c))return s.xLabelVal=void 0,s.yLabelVal=void 0,s.extraText=o(c,u,l),a}},makeHoverPointText:o}},{"../../lib":724,"../../plots/cartesian/axes":770,"../scatter/hover":1059}],1110:[function(t,e,r){"use strict";e.exports={moduleType:"trace",name:"scatterpolar",basePlotModule:t("../../plots/polar"),categories:["polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:t("./calc"),plot:t("./plot"),style:t("../scatter/style").style,hoverPoints:t("./hover").hoverPoints,selectPoints:t("../scatter/select"),meta:{}}},{"../../plots/polar":836,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1106,"./calc":1107,"./defaults":1108,"./hover":1109,"./plot":1111}],1111:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../constants/numerical").BADNUM;e.exports=function(t,e,r){var a,o,s,l={xaxis:e.xaxis,yaxis:e.yaxis,plot:e.framework,layerClipId:e._hasClipOnAxisFalse?e.clipIds.circle:null},c=e.radialAxis,u=c.range;for(s=u[0]>u[1]?function(t){return t<=0}:function(t){return t>=0},a=0;a<r.length;a++)for(o=0;o<r[a].length;o++){var f=r[a][o],h=f.r;if(h!==i){var d=c.c2r(h)-u[0];if(s(d)){var p=f.rad;f.x=d*Math.cos(p),f.y=d*Math.sin(p);continue}f.intoCenter=[e.cxx,e.cyy]}f.x=i,f.y=i}n(t,l,r)}},{"../../constants/numerical":702,"../scatter/plot":1067}],1112:[function(t,e,r){"use strict";var n=t("../scatterpolar/attributes"),i=t("../scattergl/attributes");e.exports={mode:n.mode,r:n.r,theta:n.theta,thetaunit:n.thetaunit,text:n.text,line:i.line,connectgaps:i.connectgaps,marker:i.marker,fill:i.fill,fillcolor:i.fillcolor,hoverinfo:n.hoverinfo,hoveron:n.hoveron,selected:n.selected,unselected:n.unselected}},{"../scattergl/attributes":1095,"../scatterpolar/attributes":1106}],1113:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/fillcolor_defaults"),l=t("../scatter/constants").PTS_LINESONLY,c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}var h=f("r"),d=f("theta"),p=h&&d?Math.min(h.length,d.length):0;if(p){e._length=p,f("thetaunit"),f("mode",p<l?"lines+markers":"lines"),f("text"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps"));var m=[];i.hasMarkers(e)&&(a(t,e,r,u,f),m.push("points")),f("fill"),"none"!==e.fill&&s(t,e,r,f),"tonext"!==e.fill&&"toself"!==e.fill||m.push("fills"),f("hoveron",m.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,f)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"./attributes":1112}],1114:[function(t,e,r){"use strict";var n=t("kdgrass"),i=t("fast-isnumeric"),a=t("../scattergl"),o=t("../scatter/colorscale_calc"),s=t("../../plots/cartesian/axes"),l=t("../scatterpolar/hover").makeHoverPointText,c=t("../scatter/subtypes");e.exports={moduleType:"trace",name:"scatterpolargl",basePlotModule:t("../../plots/polar"),categories:["gl","regl","polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:function(t,e){var r=t._fullLayout,n=e.subplot,i=r[n].radialaxis,a=r[n].angularaxis,l=i.makeCalcdata(e,"r"),c=a.makeCalcdata(e,"theta"),u={};return e._length<l.length&&(l=l.slice(0,e._length)),e._length<c.length&&(c=c.slice(0,e._length)),o(e),u.r=l,u.theta=c,s.expand(i,l,{tozero:!0}),"linear"!==a.type&&(a.autorange=!0,s.expand(a,c),delete a.autorange),[{x:!1,y:!1,t:u,trace:e}]},plot:function(t,e,r){var o=e.radialAxis,s=e.angularAxis,l=o.range,u=a.sceneUpdate(t,e);return u.clear(),r.forEach(function(f,h){if(f&&f[0]&&f[0].trace){var d,p,m,v,g,y=f[0],b=y.trace,x=y.t,_=x.r,w=x.theta,M=_.slice(),k=w.slice();for(d=0;d<_.length;d++)p=_[d],v=w[d],g=s.c2rad(v,b.thetaunit),e.isPtWithinSector({r:p,rad:g})||(M[d]=NaN,k[d]=NaN);var A,T=_.length,E=new Array(2*T),S=Array(T),L=Array(T);for(d=0;d<T;d++)p=M[d],v=k[d],i(p)&&i(v)&&p>=0?(m=o.c2r(p)-l[0],A=v,g=s.c2rad(A,b.thetaunit),S[d]=E[2*d]=m*Math.cos(g),L[d]=E[2*d+1]=m*Math.sin(g)):S[d]=L[d]=E[2*d]=E[2*d+1]=NaN;var C=a.sceneOptions(t,e,b,E);C.fill&&!u.fill2d&&(u.fill2d=!0),C.marker&&!u.scatter2d&&(u.scatter2d=!0),C.line&&!u.line2d&&(u.line2d=!0),!C.errorX&&!C.errorY||u.error2d||(u.error2d=!0),c.hasMarkers(b)&&(C.selected.positions=C.unselected.positions=C.marker.positions),u.lineOptions.push(C.line),u.errorXOptions.push(C.errorX),u.errorYOptions.push(C.errorY),u.fillOptions.push(C.fill),u.markerOptions.push(C.marker),u.selectedOptions.push(C.selected),u.unselectedOptions.push(C.unselected),u.count=r.length,x.scene=u,x.index=h,x.x=S,x.y=L,x.rawx=S,x.rawy=L,x.r=_,x.theta=w,x.positions=E,x.count=T,x.tree=n(E,512)}}),a.plot(t,e,r)},hoverPoints:function(t,e,r,n){var i=t.cd[0].t,o=i.r,s=i.theta,c=a.hoverPoints(t,e,r,n);if(c&&!1!==c[0].index){var u=c[0];if(void 0===u.index)return c;var f=t.subplot,h=f.angularAxis,d=u.cd[u.index],p=u.trace;if(d.r=o[u.index],d.theta=s[u.index],d.rad=h.c2rad(d.theta,p.thetaunit),f.isPtWithinSector(d))return u.xLabelVal=void 0,u.yLabelVal=void 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n=t("../../lib/extend").extendFlat;r.splitToPanels=function(t){var e=[0,0],r=n({},t,{key:"header",type:"header",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!0,values:t.calcdata.headerCells.values[t.specIndex],rowBlocks:t.calcdata.headerRowBlocks,calcdata:n({},t.calcdata,{cells:t.calcdata.headerCells})});return[n({},t,{key:"cells1",type:"cells",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),n({},t,{key:"cells2",type:"cells",page:1,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),r]},r.splitToCells=function(t){var e=function(t){var e=t.rowBlocks[t.page],r=e?e.rows[0].rowIndex:0,n=e?r+e.rows.length:0;return[r,n]}(t);return(t.values||[]).slice(e[0],e[1]).map(function(r,n){return{keyWithinBlock:n+("string"==typeof r&&r.match(/[<$&> 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n=t("../box/attributes"),i=t("../../lib/extend").extendFlat;e.exports={y:n.y,x:n.x,x0:n.x0,y0:n.y0,name:n.name,orientation:i({},n.orientation,{}),bandwidth:{valType:"number",min:0,editType:"calc"},scalegroup:{valType:"string",dflt:"",editType:"calc"},scalemode:{valType:"enumerated",values:["width","count"],dflt:"width",editType:"calc"},spanmode:{valType:"enumerated",values:["soft","hard","manual"],dflt:"soft",editType:"calc"},span:{valType:"info_array",items:[{valType:"any",editType:"calc"},{valType:"any",editType:"calc"}],editType:"calc"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},editType:"plot"},fillcolor:n.fillcolor,points:i({},n.boxpoints,{}),jitter:i({},n.jitter,{}),pointpos:i({},n.pointpos,{}),marker:n.marker,text:n.text,box:{visible:{valType:"boolean",dflt:!1,editType:"plot"},width:{valType:"number",min:0,max:1,dflt:.25,editType:"plot"},fillcolor:{valType:"color",editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"style"},editType:"plot"},meanline:{visible:{valType:"boolean",dflt:!1,editType:"plot"},color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"plot"},side:{valType:"enumerated",values:["both","positive","negative"],dflt:"both",editType:"plot"},selected:n.selected,unselected:n.unselected,hoveron:{valType:"flaglist",flags:["violins","points","kde"],dflt:"violins+points+kde",extras:["all"],editType:"style"}}},{"../../lib/extend":713,"../box/attributes":877}],1138:[function(t,e,r){"use 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r=t[0],a=r.t,s=r.trace,d=r.node3=n.select(this),p=c._numViolins,m="group"===c.violinmode&&p>1,v=a.bdPos=a.dPos*(1-c.violingap)*(1-c.violingroupgap)/(m?p:1),g=a.bPos=m?2*a.dPos*((a.num+.5)/p-.5)*(1-c.violingap):0;if(!0!==s.visible||a.empty)n.select(this).remove();else{var y=e[a.valLetter+"axis"],b=e[a.posLetter+"axis"],x="both"===s.side,_=x||"positive"===s.side,w=x||"negative"===s.side,M=s.box&&s.box.visible,k=s.meanline&&s.meanline.visible,A=c._violinScaleGroupStats[s.scalegroup];if(d.selectAll("path.violin").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","violin").each(function(t){var e,r,i,o,l,c,u,f,d=n.select(this),p=t.density,m=p.length,M=t.pos+g,k=b.c2p(M);switch(s.scalemode){case"width":e=A.maxWidth/v;break;case"count":e=A.maxWidth/v*(A.maxCount/t.pts.length)}if(_){for(u=new Array(m),l=0;l<m;l++)(f=u[l]={})[a.posLetter]=M+p[l].v/e,f[a.valLetter]=p[l].t;r=h(u)}if(w){for(u=new 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-/**
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-/**
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- * @param {*} value The value to be converted
- * @param {*} scope The current scope of the value
- * @param {*} unit The unit of the value
- * @returns Decimally shifted value
- */
-function toReadableUnits(value, scope = '', unit = '') {
-  var scopes = ['p', 'n', 'u', 'm', '', 'K', 'M', 'G', 'T', 'P', 'E']; // Units: pico, nano, micro, milli, 0, Kilo, Mega, Giga, Tera, Peta, Exa
-  var scopeIndex = scopes.indexOf(scope);
-
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-
-/**
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- * @param {string} currentUnit The unit of the input value (default: 'B')
- * @returns Bytes in a readable scope
- */
-function toReadableByteUnits(value, currentUnit = 'B') {
-  var units = ['B', 'KB', 'MB', 'GB', 'TB', 'PB', 'EB']; // Units: Byte, Kilobyte, Megabyte, etc.
-  var unit_index = units.indexOf(currentUnit);
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-  while (value >= 1024 && unit_index < units.length - 1) {
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-/**
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- * @return Number of converted time
- */
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-    var units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years']   // Units of time
-    var steps = [1000.0, 1000.0, 1000.0, 60.0, 60.0, 24.0, 7.0, 4.35, 12.0]                // (Average) magnitude change between units
-
-    var givenUnitPos = units.indexOf(unit)
-    var targetUnitPos = units.indexOf(targetUnit)
-
-
-    // Obtain conversion rates in the given range
-    if (targetUnitPos > givenUnitPos) {
-      steps.slice(givenUnitPos, targetUnitPos).forEach( function(it) { value /= it} )
-    }
-    else if (targetUnitPos < givenUnitPos) {
-      steps.slice(targetUnitPos, givenUnitPos).forEach( function(it) { value *= it} )
-    }
-
-    return value
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-
-/**
- * Converts a time value to a human-readable string
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- * @param {*} unit Given unit of time
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- * @param {*} largestUnit The largest unit to convert to
- * @param {*} threshold The minimum value for the conversion to be included in the output
- * @return A human-readable string representation of the time value
- */
-function toReadableTimeUnits(value, unit = 'ms', smallestUnit = 's', largestUnit = 'years', threshold = null) {
-  const units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years'];
-  const steps = [1000, 1000, 1000, 60, 60, 24, 7, 4.35, 12];
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-  const smallestIdx = units.indexOf(smallestUnit);
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-
-  let remaining = convertTime(value, unit, units[largestIdx]);
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-    } else {
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-      remaining = 0;
-    }
-
-    if ((threshold === null && unitValue > 0) || (threshold !== null && unitValue > threshold)) {
-      let label = (unitValue === 1 && ['days', 'weeks', 'months', 'years'].includes(units[i]))
-        ? units[i].slice(0, -1)
-        : units[i];
-      let formatted = parseFloat(unitValue).toString();
-      parts.push(`${formatted}${label}`);
-    }
-  }
-
-  // Carry-over: if the last unit is exactly the conversion factor, increment previous unit
-  if (parts.length && smallestIdx > 0) {
-    let lastPart = parts[parts.length - 1];
-    let lastValue = parseFloat(lastPart.replace(/[^\d.]/g, ''));
-    let lastUnit = lastPart.replace(/[\d.]/g, '');
-    let conversionFactor = steps[smallestIdx - 1];
-    if (lastValue === conversionFactor) {
-      parts.pop();
-      let prevPart = parts[parts.length - 1];
-      let prevNum = parseFloat(prevPart.replace(/[^\d.]/g, ''));
-      let prevUnit = prevPart.replace(/[\d.]/g, '');
-      let newPrev = prevNum + 1;
-      parts[parts.length - 1] = `${parseFloat(newPrev).toString()}${prevUnit}`;
-    }
-  }
-
-  return parts.length ? parts.join(' ') : `0${smallestUnit}`;
-}
-
-//
-// Render functions
-//
-
-/**
- * Perform checks on the data before using other methods to process
- *
- * @param {*} data The data (number/string/...)
- * @param {*} type Type of the data
- * @param {function} parseFunction Function to parse the data
- * @returns
- */
-function check_data(data, type, parseFunction) {
-  if (type === 'sort') {
-    return parseFunction(data);
-  }
-  if($('#nf-table-humanreadable').val() == 'false'){
-    return data;
-  }
-  if (data == '-' || data == 0){
-    return data;
-  }
-  return null
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-
-/**
- * Render CO2 equivalents in desired output format
- *
- * @param {*} value CO2 equivalents in milli-grams
- * @param {*} type Type of the data
- * @returns CO2 equivalents as a readable unit
- */
-function make_co2e(value, type){
-  return check_data(value, type, parseFloat) ?? toReadableUnits(value, 'm', 'g');
-}
-
-/**
- * Render energy in desired output format
- *
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- * @param {*} type Type of the data
- * @returns Energy as a readable unit
- */
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-/**
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- *
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- * @param {*} type Type of the data
- * @returns The readable time
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-/**
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-  return check_data(data, type, parseFloat) ?? toReadableUnits(ci, 'm', 'gCO<sub>2</sub>e/kWh');
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-/**
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- * @returns The memory at a readable scale
- */
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-/**
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- */
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- * @param {*} type Type of the data
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-        // min equals max ==> show just a value
-        window.statsByProcess[processName][metricName] = [ metrics[metricName]['min'] ];
-      }
-      else {
-          // otherwise show all values
-          window.statsByProcess[processName][metricName] = ['min', 'q1', 'q2', 'q3', 'max'].map(stat => metrics[metricName][stat])
-      }
-      if (metricName == "time") {
-        window.statsByProcess[processName][metricName] = window.statsByProcess[processName][metricName].map(function(d,i){
-          return moment.duration(d).asMinutes().toFixed(1);
-        });
-      }
-    }
-  }
-
-  // Plot histograms of resource usage
-  var plot_data_total = [];
-  var plot_data_non_cached = [];
-  for(var processName in window.statsByProcess){
-
-    // Extract process statistics
-    var stats = window.statsByProcess[processName];
-
-    // Add CO2 Boxplot to plot
-    plot_data_total.push(
-      {
-        x:processName, y: norm_units(stats.co2e), name: processName,
-        type:'box', boxmean: true, boxpoints: false
-      }
-    );
-
-    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
-    plot_data_total.push(
-      {
-        x:processName, y: norm_units(stats.energy), name: processName,
-        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
-        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
-      }
-    );
-
-    // Add outline of CO2 emissions from non-cached processes to plot
-    plot_data_non_cached.push(
-      {
-        x:processName, y: norm_units(stats.co2e_non_cached), name: processName,
-        type:'box', boxmean: true, boxpoints: false,
-      }
-    );
-
-    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
-    plot_data_non_cached.push(
-      {
-        x:processName, y: norm_units(stats.energy_non_cached), name: processName,
-        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
-        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
-      }
-    );
-  }
-
-  var layout = {
-    title: 'CO<sub>2</sub> emission & energy consumption',
-    legend: {
-      x: 1.1
-    },
-    xaxis: {
-      title: 'Processes',
-    },
-    yaxis: {
-      title: 'CO2e emission (g)',
-      rangemode: 'tozero',
-    },
-    yaxis2: {
-      title: 'Energy consumption (Wh)',
-      rangemode: 'tozero',
-      gridcolor: 'rgba(0, 0, 0, 0)', // transparent grid lines
-      overlaying: 'y',
-      side: 'right',
-    },
-    boxmode: 'group',
-  };
-
-  Plotly.newPlot('co2e-total-plot', plot_data_total, layout);
-  Plotly.newPlot('co2e-non-cached-plot', plot_data_non_cached, layout);
-
-  //
-  // Table creation functions
-  //
-
-  /**
-   * Function to create the table of tasks
-   */
-  function make_tasks_table(){
-    // reset
-      if ( $.fn.dataTable.isDataTable( '#tasks_table' ) ) {
-        $('#tasks_table').DataTable().destroy();
-      }
-
-      // Column titles
-      var energyConsumptionTitle = 'energy consumption (mWh)'; // Default column title
-      var co2EmissionsTitle = 'CO₂e emissions (mg)';
-      if ($('#nf-table-humanreadable').val() == 'true') {
-        energyConsumptionTitle = 'energy consumption'; // Change the column title if the button is selected
-        co2EmissionsTitle = 'CO₂e emissions';
-      }
-
-      var table = $('#tasks_table').DataTable({
-        data: window.data.trace,
-        columns: [
-          { title: 'task_id', data: 'task_id' },
-          { title: 'process', data: 'process' },
-          { title: 'tag', data: 'tag' },
-          { title: 'status', data: 'status', render: function(data, type, row){
-              var s = {
-                COMPLETED: 'success',
-                CACHED: 'secondary',
-                ABORTED: 'danger',
-                FAILED: 'danger'
-              }
-              return '<span class="badge badge-'+s[data]+'">'+data+'</span>';
-            }
-          },
-          { title: 'hash', data: 'hash', render:  function(data, type, row){
-              var script = '';
-              var lines = data.split("\n");
-              var ws_re = /^(\s+)/g;
-              var flws_match = ws_re.exec(lines[1]);
-              if(flws_match == null){
-                script = data;
-              } else {
-                for(var j=0; j<lines.length; j++){
-                  script += lines[j].replace(new RegExp('^'+flws_match[1]), '').replace(/\s+$/,'') + "\n";
-                }
-              }
-              return '<code>'+script+'</code>';
-            }
-          },
-          { title: energyConsumptionTitle, data: 'energy', type: 'num', render: make_energy },
-          { title: co2EmissionsTitle, data: 'co2e', type: 'num', render: make_co2e },
-          { title: `${co2EmissionsTitle} (market)`, data: 'co2eMarket', type: 'num', render: make_co2e },
-          { title: 'carbon intensity', data: 'ci', type: 'num', render: make_carbon_intensity },
-          { title: 'allocated cpus', data: 'cpus', type: 'num' },
-          { title: '%cpu', data: 'cpuUsage', type: 'num', render: make_core_usage_factor },
-          { title: 'allocated memory', data: 'memory', type: 'num', render: make_memory },
-          { title: 'realtime', data: 'time', type: 'num', render: make_time },
-          { title: 'power draw (in W/core)', data: 'powerdrawCPU', type: 'num', render: make_power_draw_cpu },
-          { title: 'cpu model', data: 'cpu_model' },
-        ],
-        "deferRender": true,
-        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
-        "scrollX": true,
-        "colReorder": true,
-        "columnDefs": [
-          { className: "id", "targets": [ 0,1,2,3 ] },
-          { className: "meta", "targets": [ 4,7,8,9,10,11 ] },
-          { className: "metrics", "targets": [ 5,6 ] }
-        ],
-        "buttons": [
-          {
-            extend: 'colvisGroup',
-            text: 'Metrics',
-            show: [ '.id', '.metrics' ],
-            hide: [ '.meta' ],
-          },
-          {
-            extend: 'colvisGroup',
-            text: 'Metadata',
-            show: [ '.id', '.meta'],
-            hide: [ '.metrics' ],
-          },
-          {
-            extend: 'colvisGroup',
-            text: 'All',
-            show: ':hidden',
-          },
-        ]
-      });
-
-      // Insert column filter button group
-      table.buttons().container()
-        .prependTo( $('#tasks_table_filter') );
-
-      // Column filter button group onClick event to highlight active filter
-      $('.buttons-colvisGroup').click(function(){
-        var def = 'btn-secondary';
-        var sel = 'btn-primary';
-        $('.buttons-colvisGroup').removeClass(sel).addClass(def);
-        $(this).addClass(sel).removeClass(def);
-      });
-
-      // Default filter highlight
-      $(".buttons-colvisGroup:contains('All')").click();
-  }
-
-  // Executor for task table creation (on page load)
-  if( window.data.trace==null ) {
-      // Hide tasks table if too many tasks are present
-      $('#tasks-present-table').remove()
-  }
-  else {
-      $('#tasks-omitted-table').remove()
-      // Dropdown changed about raw / human readable values in table
-      $('#nf-table-humanreadable').change(function(){
-        make_tasks_table();
-      });
-      // Make the table on page load
-      make_tasks_table();
-  }
-
-  /**
-   * Function to create the table of options / configurations
-   */
-  function make_options_table(){
-    // reset
-    if ( $.fn.dataTable.isDataTable( '#options_table' ) ) {
-      $('#options_table').DataTable().destroy();
-    }
-
-    var table = $('#options_table').DataTable({
-      data: window.options,
-      columns: [
-          { title: "Option", data: "option" },
-          { title: "Value", data: "value" }
-        ],
-        "deferRender": true,
-        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
-    });
-  }
-
-  // Executor for options table creation (on page load)
-  make_options_table();
-});
-
-  // Nextflow report data
-  window.data = {"trace":[{"task_id":"6","hash":"63\/c1b5a4","native_id":"3942212","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:13.894","start":"2025-10-17 15:38:13.966","complete":"2025-10-17 15:38:15.371","duration":"1.5s","realtime":"0ms","%cpu":"35.4%","%mem":"0.0%","rss":"3 MB","vmem":"5.4 MB","peak_rss":"3 MB","peak_vmem":"5.4 MB","rchar":"74.8 KB","wchar":"3.5 KB","syscr":"201","syscw":"105","read_bytes":"52 KB","write_bytes":"4.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/63\/c1b5a4228808870070d846151335af","script":"\n    famsa -gt_export \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_FAMSA-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"35.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"13","hash":"b2\/868270","native_id":"3942234","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"toxin-ref args: -gt_upgma_-medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:13.913","start":"2025-10-17 15:38:13.985","complete":"2025-10-17 15:38:15.462","duration":"1.5s","realtime":"0ms","%cpu":"41.5%","%mem":"0.0%","rss":"2.9 MB","vmem":"5.4 MB","peak_rss":"2.9 MB","peak_vmem":"5.4 MB","rchar":"78.5 KB","wchar":"3.7 KB","syscr":"201","syscw":"105","read_bytes":"0","write_bytes":"4.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b2\/868270283d98027f9195c5b3e8945f","script":"\n    famsa -gt_export \\\n        -gt upgma -medoidtree \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"16","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"41.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"2","hash":"d7\/9634ad","native_id":"3942249","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-27978155697a3671f3ef9aead4b5c823a02cc0b7:548df772fe13c0232a7eab1bc1deb98b495a05ab-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:13.928","start":"2025-10-17 15:38:13.993","complete":"2025-10-17 15:38:18.355","duration":"4.4s","realtime":"3s","%cpu":"69.8%","%mem":"0.9%","rss":"70.2 MB","vmem":"1.1 GB","peak_rss":"70.2 MB","peak_vmem":"1.1 GB","rchar":"15.7 MB","wchar":"623 B","syscr":"1384","syscw":"19","read_bytes":"18.6 MB","write_bytes":"4.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/d7\/9634ad5f79a0a0b7f3e953d2efa223","script":"\n    calc_seqstats.py seatoxin-ref         setoxin-ref.fa         \"seatoxin-ref_seqstats.csv\"         \"seatoxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"548","inv_ctxt":"327","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"5.657291440375","co2e":"2.71549989138","co2eMarket":"-","time":"8.333333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"69.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"1","hash":"04\/d2fa32","native_id":"3942285","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR","module":"-","container":"community.wave.seqera.io\/library\/coreutils_grep_gzip_lbzip2_pruned:838ba80435a629f8","tag":"seatoxin-ref.tar.gz","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:13.956","start":"2025-10-17 15:38:14.000","complete":"2025-10-17 15:38:15.890","duration":"1.9s","realtime":"211ms","%cpu":"38.6%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.6 MB","peak_rss":"3.2 MB","peak_vmem":"4.6 MB","rchar":"721.2 KB","wchar":"684.8 KB","syscr":"323","syscw":"74","read_bytes":"144 KB","write_bytes":"223.5 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/04\/d2fa32297709021c35bbbac3d3a68e","script":"\n    mkdir seatoxin-ref\n\n    ## Ensures --strip-components only applied when top level of tar contents is a directory\n    ## If just files or multiple directories, place all in prefix\n    if [[ $(tar -taf seatoxin-ref.tar.gz | grep -o -P \"^.*?\\\/\" | uniq | wc -l) -eq 1 ]]; then\n        tar \\\n            -C seatoxin-ref --strip-components 1 \\\n            -xavf \\\n             \\\n            seatoxin-ref.tar.gz \\\n            \n    else\n        tar \\\n            -C seatoxin-ref \\\n            -xavf \\\n             \\\n            seatoxin-ref.tar.gz \\\n            \n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR\":\n        untar: $(echo $(tar --version 2>&1) | sed \'s\/^.*(GNU tar) \/\/; s\/ Copyright.*$\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.249316966625","co2e":"0.11967214398","co2eMarket":"-","time":"5.86111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"38.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"11","hash":"09\/3b3d9c","native_id":"3942456","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/mafft:7.525--h031d066_1","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:15.402","start":"2025-10-17 15:38:15.482","complete":"2025-10-17 15:38:17.791","duration":"2.4s","realtime":"1s","%cpu":"48.5%","%mem":"0.0%","rss":"6 MB","vmem":"8.6 MB","peak_rss":"6 MB","peak_vmem":"8.6 MB","rchar":"1010.4 KB","wchar":"9.8 KB","syscr":"1531","syscw":"141","read_bytes":"60 KB","write_bytes":"22.5 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/09\/3b3d9cc763bf3ae1090e0b4c959a95","script":"\n    mafft \\\n        --thread 2 \\\n        --retree 0 \\\n         \\\n        --treeout toxin-ref.fa > log.txt\n\n    mv *.tree toxin-ref_MAFFT-args-default.dnd.tmp\n\n    # remove all prefixes added by mafft which make the output incompatible with other tools\n    awk \'{gsub(\/^[0-9]+_\/, \"\"); print}\' toxin-ref_MAFFT-args-default.dnd.tmp > toxin-ref_MAFFT-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"21","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.405034834625","co2e":"0.67441672062","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"48.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"8","hash":"91\/391252","native_id":"3942471","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/mafft:7.525--h031d066_1","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:15.486","start":"2025-10-17 15:38:15.564","complete":"2025-10-17 15:38:17.728","duration":"2.2s","realtime":"1s","%cpu":"52.6%","%mem":"0.0%","rss":"6.3 MB","vmem":"8.6 MB","peak_rss":"6.3 MB","peak_vmem":"8.6 MB","rchar":"998.4 KB","wchar":"4.1 KB","syscr":"1531","syscw":"140","read_bytes":"100 KB","write_bytes":"20.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/91\/391252a674316c7f6ee8e6a7dbf771","script":"\n    mafft \\\n        --thread 2 \\\n        --retree 0 \\\n         \\\n        --treeout setoxin-ref.fa > log.txt\n\n    mv *.tree seatoxin-ref_MAFFT-args-default.dnd.tmp\n\n    # remove all prefixes added by mafft which make the output incompatible with other tools\n    awk \'{gsub(\/^[0-9]+_\/, \"\"); print}\' seatoxin-ref_MAFFT-args-default.dnd.tmp > seatoxin-ref_MAFFT-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"19","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.49756956425","co2e":"0.71883339084","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"52.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"3","hash":"cc\/9ed30f","native_id":"3942564","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:15.906","start":"2025-10-17 15:38:15.991","complete":"2025-10-17 15:38:18.651","duration":"2.7s","realtime":"1s","%cpu":"60.3%","%mem":"0.1%","rss":"10.6 MB","vmem":"16.9 MB","peak_rss":"10.6 MB","peak_vmem":"16.9 MB","rchar":"4.3 MB","wchar":"481 B","syscr":"909","syscw":"21","read_bytes":"2.9 MB","write_bytes":"4.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/cc\/9ed30f4fe47653c9fc382cf6f57b72","script":"\n    py_fasta_validator \\\n        -f setoxin-ref.fa \\\n        2> \"seatoxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to seatoxin-ref.error.log\"\n\n    if [ $(cat \"seatoxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"seatoxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"seatoxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"seatoxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"45","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.671354300375","co2e":"0.80225006418","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"60.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"9","hash":"18\/15794f","native_id":"3943002","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-27978155697a3671f3ef9aead4b5c823a02cc0b7:548df772fe13c0232a7eab1bc1deb98b495a05ab-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:17.738","start":"2025-10-17 15:38:17.792","complete":"2025-10-17 15:38:21.349","duration":"3.6s","realtime":"2s","%cpu":"99.0%","%mem":"1.0%","rss":"78.3 MB","vmem":"1.1 GB","peak_rss":"78.3 MB","peak_vmem":"1.1 GB","rchar":"15.7 MB","wchar":"882 B","syscr":"1384","syscw":"19","read_bytes":"4 KB","write_bytes":"4.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/18\/15794f34b664c1cb5423e7887022cb","script":"\n    calc_seqstats.py toxin-ref         toxin-ref.fa         \"toxin-ref_seqstats.csv\"         \"toxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"26","inv_ctxt":"449","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"5.0895837405","co2e":"2.44300019544","co2eMarket":"-","time":"5.555556E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"99.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"10","hash":"9c\/4a6d30","native_id":"3943021","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:17.802","start":"2025-10-17 15:38:17.891","complete":"2025-10-17 15:38:19.735","duration":"1.9s","realtime":"1s","%cpu":"33.9%","%mem":"0.1%","rss":"7 MB","vmem":"14.2 MB","peak_rss":"7 MB","peak_vmem":"14.2 MB","rchar":"167.7 KB","wchar":"17.2 KB","syscr":"396","syscw":"30","read_bytes":"52 KB","write_bytes":"28.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/9c\/4a6d301f5fefb83d28022415fa5665","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > \"toxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"29","inv_ctxt":"4","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.075520919375","co2e":"0.5162500413","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"33.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"14","hash":"c6\/adef86","native_id":"3943153","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:18.386","start":"2025-10-17 15:38:18.468","complete":"2025-10-17 15:38:20.190","duration":"1.8s","realtime":"0ms","%cpu":"53.8%","%mem":"0.0%","rss":"3.1 MB","vmem":"5.4 MB","peak_rss":"3.1 MB","peak_vmem":"5.4 MB","rchar":"75.9 KB","wchar":"3 KB","syscr":"201","syscw":"75","read_bytes":"0","write_bytes":"4.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/c6\/adef86ad2990167cbfae0be810c265","script":"\n    famsa -gt_export \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_FAMSA-args-default.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"4","hash":"b8\/c1b643","native_id":"3943203","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:18.663","start":"2025-10-17 15:38:18.752","complete":"2025-10-17 15:38:20.729","duration":"2.1s","realtime":"1s","%cpu":"35.2%","%mem":"0.0%","rss":"3.2 MB","vmem":"5.4 MB","peak_rss":"3.2 MB","peak_vmem":"5.4 MB","rchar":"147.6 KB","wchar":"1.7 KB","syscr":"396","syscw":"26","read_bytes":"0","write_bytes":"13.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b8\/c1b643d8a8f06cef54d801c4a35184","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in setoxin-ref.fa         -output=sim_idscore         > \"seatoxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"4","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.1048611995","co2e":"0.53033337576","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"35.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"12","hash":"84\/935af3","native_id":"3943314","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:19.800","start":"2025-10-17 15:38:19.835","complete":"2025-10-17 15:38:21.590","duration":"1.8s","realtime":"0ms","%cpu":"48.9%","%mem":"0.1%","rss":"8.1 MB","vmem":"85.9 MB","peak_rss":"8.1 MB","peak_vmem":"148.4 MB","rchar":"70.4 KB","wchar":"2.7 KB","syscr":"174","syscw":"18","read_bytes":"80 KB","write_bytes":"4.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/84\/935af333d51426c239c5ad2065feb0","script":"\n    clustalo \\\n        -i toxin-ref.fa \\\n        --guidetree-out toxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"34","inv_ctxt":"32","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"48.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"5","hash":"f5\/bf27a4","native_id":"3943396","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"seatoxin-ref args: -gt_upgma_-medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:20.208","start":"2025-10-17 15:38:20.290","complete":"2025-10-17 15:38:22.043","duration":"1.8s","realtime":"0ms","%cpu":"45.9%","%mem":"0.0%","rss":"2.9 MB","vmem":"5.4 MB","peak_rss":"2.9 MB","peak_vmem":"5.4 MB","rchar":"77.4 KB","wchar":"3.5 KB","syscr":"201","syscw":"105","read_bytes":"0","write_bytes":"4.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/f5\/bf27a4ac87ab0098fcfd1a47f7cd0c","script":"\n    famsa -gt_export \\\n        -gt upgma -medoidtree \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"45.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"7","hash":"15\/5f2ac1","native_id":"3943479","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:20.770","start":"2025-10-17 15:38:20.829","complete":"2025-10-17 15:38:22.552","duration":"1.8s","realtime":"0ms","%cpu":"59.0%","%mem":"0.0%","rss":"3 MB","vmem":"5.4 MB","peak_rss":"3 MB","peak_vmem":"5.4 MB","rchar":"68.1 KB","wchar":"833 B","syscr":"174","syscw":"18","read_bytes":"0","write_bytes":"4.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/15\/5f2ac15c26656afd4c1eda1bb79f9c","script":"\n    clustalo \\\n        -i setoxin-ref.fa \\\n        --guidetree-out seatoxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"59.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"15","hash":"ac\/f17128","native_id":"3943722","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:21.366","start":"2025-10-17 15:38:21.450","complete":"2025-10-17 15:38:23.512","duration":"2.1s","realtime":"1s","%cpu":"71.8%","%mem":"0.1%","rss":"12.7 MB","vmem":"19.2 MB","peak_rss":"12.7 MB","peak_vmem":"19.2 MB","rchar":"4.3 MB","wchar":"481 B","syscr":"909","syscw":"21","read_bytes":"0","write_bytes":"4.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ac\/f171288f49a5b075a7dded3a2e428b","script":"\n    py_fasta_validator \\\n        -f toxin-ref.fa \\\n        2> \"toxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to toxin-ref.error.log\"\n\n    if [ $(cat \"toxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"toxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"toxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"toxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"17","inv_ctxt":"61","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.93090293225","co2e":"0.92683340748","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"71.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"16","hash":"44\/242579","native_id":"3943778","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"seatoxin-ref tree: FAMSA","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:21.625","start":"2025-10-17 15:38:21.690","complete":"2025-10-17 15:38:30.399","duration":"8.8s","realtime":"7s","%cpu":"83.5%","%mem":"0.5%","rss":"47.2 MB","vmem":"276.9 MB","peak_rss":"47.2 MB","peak_vmem":"276.9 MB","rchar":"17.5 MB","wchar":"224.3 KB","syscr":"16614","syscw":"2548","read_bytes":"5.9 MB","write_bytes":"659.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/44\/242579aeaefb8a4cd6a2639d6afde8","script":"\n    magus \\\n        -np 2 \\\n        -i setoxin-ref.fa \\\n        -d .\/ \\\n        -o seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln \\\n        -t seatoxin-ref_FAMSA-args-default.dnd \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"805","inv_ctxt":"358","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"15.36475659325","co2e":"7.37508316476","co2eMarket":"-","time":"0.0019444444","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"83.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"17","hash":"8e\/dcc998","native_id":"3943874","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:22.067","start":"2025-10-17 15:38:22.144","complete":"2025-10-17 15:38:23.901","duration":"1.8s","realtime":"0ms","%cpu":"126.3%","%mem":"0.1%","rss":"7.3 MB","vmem":"1.1 GB","peak_rss":"7.3 MB","peak_vmem":"1.1 GB","rchar":"89.7 KB","wchar":"5.6 KB","syscr":"210","syscw":"115","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/8e\/dcc998ecad069c29fd35191bea9d21","script":"\n    famsa -gt import toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd \\\n         \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"15","inv_ctxt":"19","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"126.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"20","hash":"02\/b5d862","native_id":"3944000","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:22.578","start":"2025-10-17 15:38:22.711","complete":"2025-10-17 15:38:24.922","duration":"2.3s","realtime":"1s","%cpu":"39.9%","%mem":"0.1%","rss":"6.8 MB","vmem":"14.2 MB","peak_rss":"6.8 MB","peak_vmem":"14.2 MB","rchar":"934.5 KB","wchar":"234.5 KB","syscr":"582","syscw":"45","read_bytes":"292 KB","write_bytes":"255.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/02\/b5d86213fa1b24e35aefc01333ff23","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1sh1.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1sh1.pdb                  > \"1sh1.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"33","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.210937596875","co2e":"0.5812500465","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"22","hash":"4a\/6cc074","native_id":"3944086","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:23.540","start":"2025-10-17 15:38:23.611","complete":"2025-10-17 15:38:26.060","duration":"2.5s","realtime":"1s","%cpu":"49.0%","%mem":"0.0%","rss":"2.9 MB","vmem":"5.4 MB","peak_rss":"2.9 MB","peak_vmem":"5.4 MB","rchar":"928.2 KB","wchar":"232.1 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"252.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/4a\/6cc074951a9bda6d270d34a06fb4f2","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1ahl.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1ahl.pdb                  > \"1ahl.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"8","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.41631955775","co2e":"0.67983338772","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"49.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"18","hash":"cd\/57377d","native_id":"3944155","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:23.917","start":"2025-10-17 15:38:24.002","complete":"2025-10-17 15:38:26.418","duration":"2.5s","realtime":"0ms","%cpu":"44.4%","%mem":"0.0%","rss":"3.1 MB","vmem":"5.4 MB","peak_rss":"3.1 MB","peak_vmem":"5.4 MB","rchar":"941.3 KB","wchar":"237 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"257.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/cd\/57377dc490458f4171954b893aed55","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1apf.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1apf.pdb                  > \"1apf.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"21","hash":"e4\/9d98f8","native_id":"3944284","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:24.968","start":"2025-10-17 15:38:25.023","complete":"2025-10-17 15:38:27.385","duration":"2.4s","realtime":"0ms","%cpu":"50.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"5.4 MB","peak_rss":"3.1 MB","peak_vmem":"5.4 MB","rchar":"904.5 KB","wchar":"223.2 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"243.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/e4\/9d98f850d8eb17ba549b1fb3acbee6","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1atx.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1atx.pdb                  > \"1atx.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"9","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"50.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"19","hash":"95\/7af10d","native_id":"3944452","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:26.077","start":"2025-10-17 15:38:26.159","complete":"2025-10-17 15:38:28.002","duration":"1.9s","realtime":"0ms","%cpu":"53.2%","%mem":"0.1%","rss":"7 MB","vmem":"14.2 MB","peak_rss":"7 MB","peak_vmem":"14.2 MB","rchar":"899.2 KB","wchar":"221.3 KB","syscr":"582","syscw":"45","read_bytes":"0","write_bytes":"241.9 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/95\/7af10dd098fd25836311414adc5f45","script":"\n    export TEMP=\'.\/\'\n    mkdir old\n    mv 1bds.pdb old\/\n    t_coffee -other_pg extract_from_pdb         -infile old\/1bds.pdb                  > \"1bds.pdb\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"33","inv_ctxt":"27","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"23","hash":"7f\/41a79a","native_id":"3944527","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:26.439","start":"2025-10-17 15:38:26.518","complete":"2025-10-17 15:38:27.926","duration":"1.5s","realtime":"78ms","%cpu":"50.0%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"145 KB","wchar":"1.5 KB","syscr":"330","syscw":"33","read_bytes":"64 KB","write_bytes":"170 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7f\/41a79a3f057ca25d5fd125920bd18f","script":"\n    echo \"toxin-ref\" > tmp\n    grep ^TOT toxin-ref.txt | cut -f4 >> tmp\n    #remove empty spaces\n    sed -i \'s\/ \/\/g\' tmp\n\n    echo \"id,perc_sim\" > toxin-ref.sim_tot\n    cat tmp | tr \'\\n\' \',\' | awk \'gsub(\/,$\/,x)\' >>  toxin-ref.sim_tot\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n        cat: $(echo $(cat --version 2>&1) | sed \'s\/^.*coreutils) \/\/; s\/ .*$\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"14","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.112233506","co2e":"0.05387208288","co2eMarket":"-","time":"2.16667E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"50.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"24","hash":"52\/5f8a8e","native_id":"3944665","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"toxin-ref tree: FAMSA","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:27.400","start":"2025-10-17 15:38:27.485","complete":"2025-10-17 15:38:35.460","duration":"8.1s","realtime":"6s","%cpu":"91.9%","%mem":"0.6%","rss":"51.6 MB","vmem":"282.2 MB","peak_rss":"51.6 MB","peak_vmem":"282.2 MB","rchar":"18 MB","wchar":"595.7 KB","syscr":"16671","syscw":"5270","read_bytes":"0","write_bytes":"874.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/52\/5f8a8ee1e74371e2e2ba9178b4135a","script":"\n    magus \\\n        -np 2 \\\n        -i toxin-ref.fa \\\n        -d .\/ \\\n        -o toxin-ref_FAMSA-args-default_MAGUS-args-default.aln \\\n        -t toxin-ref_FAMSA-args-default.dnd \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"475","inv_ctxt":"456","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"14.3072919528125","co2e":"6.86750013735","co2eMarket":"-","time":"0.0016666667","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"91.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"25","hash":"69\/45937d","native_id":"3944726","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:27.934","start":"2025-10-17 15:38:28.003","complete":"2025-10-17 15:38:30.109","duration":"2.2s","realtime":"149ms","%cpu":"28.4%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"129.5 KB","wchar":"1.5 KB","syscr":"330","syscw":"33","read_bytes":"0","write_bytes":"179 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/69\/45937d045598995cc9a6db67e7619d","script":"\n    echo \"seatoxin-ref\" > tmp\n    grep ^TOT seatoxin-ref.txt | cut -f4 >> tmp\n    #remove empty spaces\n    sed -i \'s\/ \/\/g\' tmp\n\n    echo \"id,perc_sim\" > seatoxin-ref.sim_tot\n    cat tmp | tr \'\\n\' \',\' | awk \'gsub(\/,$\/,x)\' >>  seatoxin-ref.sim_tot\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n        cat: $(echo $(cat --version 2>&1) | sed \'s\/^.*coreutils) \/\/; s\/ .*$\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"11","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.1417569825","co2e":"0.0680433516","co2eMarket":"-","time":"4.13889E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"28.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"26","hash":"02\/8e36da","native_id":"3944741","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/csvtk:0.31.0--h9ee0642_0","tag":"summary_seqstats","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:28.029","start":"2025-10-17 15:38:28.101","complete":"2025-10-17 15:38:30.184","duration":"2.2s","realtime":"0ms","%cpu":"47.6%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"73.9 KB","wchar":"531 B","syscr":"186","syscw":"19","read_bytes":"16 KB","write_bytes":"209 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/02\/8e36da97c40755ab69095a27066935","script":"\n    csvtk \\\n        concat \\\n         \\\n        --num-cpus 2 \\\n        --delimiter \",\" \\\n        --out-delimiter \",\" \\\n        --out-file summary_seqstats.csv \\\n        inputs\/csv1\/seatoxin-ref_seqstats_summary.csv inputs\/csv2\/toxin-ref_seqstats_summary.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS\":\n        csvtk: $(echo $( csvtk version | sed -e \"s\/csvtk v\/\/g\" ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"47.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"27","hash":"1c\/6d6917","native_id":"3945040","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref tree: CLUSTALO  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:30.116","start":"2025-10-17 15:38:30.184","complete":"2025-10-17 15:38:32.394","duration":"2.3s","realtime":"0ms","%cpu":"46.1%","%mem":"0.1%","rss":"7.8 MB","vmem":"13.4 MB","peak_rss":"7.8 MB","peak_vmem":"13.4 MB","rchar":"694.1 KB","wchar":"29 KB","syscr":"802","syscw":"118","read_bytes":"684 KB","write_bytes":"93.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/1c\/6d691772dc7257a4904d7f6b001b54","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq toxin-ref.fa         -reg_tree toxin-ref_CLUSTALO-args-default.dnd                  -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"58","inv_ctxt":"18","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"46.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"28","hash":"5f\/949425","native_id":"3945071","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:30.202","start":"2025-10-17 15:38:30.284","complete":"2025-10-17 15:38:31.785","duration":"1.6s","realtime":"0ms","%cpu":"53.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"88.3 KB","wchar":"4.1 KB","syscr":"210","syscw":"115","read_bytes":"0","write_bytes":"401 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5f\/949425e8cc31c5e46ddbd916fe208f","script":"\n    famsa -gt import seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd \\\n         \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"31","hash":"7a\/7de8b8","native_id":"3945132","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-5cd0277547c6b33133225c8ce14c0cf2a4396ea2:0a70b6d89a3e06fbdc4a735461e8b98ff32ee5de-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:30.419","start":"2025-10-17 15:38:30.502","complete":"2025-10-17 15:38:32.025","duration":"1.6s","realtime":"0ms","%cpu":"47.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"106.8 KB","wchar":"2 KB","syscr":"248","syscw":"33","read_bytes":"80 KB","write_bytes":"397 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7a\/7de8b8bffc97f8a9aa0da39046eaf6","script":"\n    error_handler() {\n    exit_code=$?\n        if [ $exit_code -eq 132 ]; then\n            echo \"KALIGN failed because is incompatible with some CPU types, see https:\/\/github.com\/TimoLassmann\/kalign\/issues\/46.\"\n        else\n            trap - ERR\n            return $exit_code\n        fi\n    }\n\n    trap \'error_handler\' ERR\n\n    unpigz -cdf setoxin-ref.fa | \\\n    kalign \\\n         \\\n        -n 2 \\\n        -o seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN\":\n        kalign: $(echo $(kalign -v) | sed \'s\/kalign \/\/g\' )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"47.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"29","hash":"05\/d3df2e","native_id":"3945301","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref tree: CLUSTALO  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:31.802","start":"2025-10-17 15:38:31.885","complete":"2025-10-17 15:38:34.031","duration":"2.2s","realtime":"1s","%cpu":"43.9%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"676.2 KB","wchar":"16.4 KB","syscr":"802","syscw":"103","read_bytes":"0","write_bytes":"85 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/05\/d3df2e2e6def6012c3be58a6b8a90a","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq setoxin-ref.fa         -reg_tree seatoxin-ref_CLUSTALO-args-default.dnd                  -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.301215381875","co2e":"0.6245833833","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"50","hash":"b6\/63d553","native_id":"3945352","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:32.045","start":"2025-10-17 15:38:32.125","complete":"2025-10-17 15:38:42.276","duration":"10.2s","realtime":"8s","%cpu":"171.0%","%mem":"0.3%","rss":"28.2 MB","vmem":"541.4 MB","peak_rss":"28.2 MB","peak_vmem":"544.2 MB","rchar":"759.9 KB","wchar":"35.3 KB","syscr":"943","syscw":"141","read_bytes":"48 KB","write_bytes":"138.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b6\/63d55356a422f916a7d9a432289eb7","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq toxin-ref.fa                           -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"976","inv_ctxt":"2106","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"33.35833299975","co2e":"16.01199983988","co2eMarket":"-","time":"0.0022222222","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"171.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"53","hash":"fd\/9167c6","native_id":"3945446","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN","module":"-","container":"community.wave.seqera.io\/library\/t-coffee_tmalign_pigz:be7dac2ae6aba380","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:32.440","start":"2025-10-17 15:38:32.495","complete":"2025-10-17 15:38:39.378","duration":"6.9s","realtime":"5.2s","%cpu":"67.6%","%mem":"1.2%","rss":"98.6 MB","vmem":"120.3 MB","peak_rss":"98.6 MB","peak_vmem":"120.3 MB","rchar":"3.1 MB","wchar":"2.8 MB","syscr":"1507","syscw":"1513","read_bytes":"1.4 MB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fd\/9167c6773c404197c4350b5b964a4b","script":"\n    export TEMP=\'.\/\'\n    export TMP_4_TCOFFEE=\".\/\"\n    export HOME=\".\/\"\n    t_coffee -seq toxin-ref.fa                           -output fasta_aln         -thread 2         -outfile toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln         \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1364","inv_ctxt":"1844","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"9.595516887","co2e":"4.60584810576","co2eMarket":"-","time":"0.0014516667","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"67.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"30","hash":"c8\/fa1032","native_id":"3945758","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:34.073","start":"2025-10-17 15:38:34.132","complete":"2025-10-17 15:38:35.904","duration":"1.8s","realtime":"0ms","%cpu":"36.8%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"88.2 KB","wchar":"4.1 KB","syscr":"208","syscw":"115","read_bytes":"0","write_bytes":"401 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/c8\/fa1032d2e6434d6e742a57ceec973c","script":"\n    famsa  \\\n         \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"36.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"52","hash":"fa\/3a57d1","native_id":"3945929","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN","module":"-","container":"community.wave.seqera.io\/library\/t-coffee_tmalign_pigz:be7dac2ae6aba380","tag":"seatoxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:35.511","start":"2025-10-17 15:38:35.560","complete":"2025-10-17 15:38:39.540","duration":"4s","realtime":"2.2s","%cpu":"23.3%","%mem":"0.3%","rss":"27.1 MB","vmem":"31.5 MB","peak_rss":"27.1 MB","peak_vmem":"31.5 MB","rchar":"422 KB","wchar":"145.9 KB","syscr":"730","syscw":"684","read_bytes":"160 KB","write_bytes":"136.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fa\/3a57d1c0c7266a81ce7cf2769d3fcb","script":"\n    export TEMP=\'.\/\'\n    export TMP_4_TCOFFEE=\".\/\"\n    export HOME=\".\/\"\n    t_coffee -seq setoxin-ref.fa                           -output fasta_aln         -thread 2         -outfile seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln         \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"481","inv_ctxt":"93","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.8766228163125","co2e":"0.90077895183","co2eMarket":"-","time":"6.233333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"23.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"48","hash":"e2\/340e4a","native_id":"3945978","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"toxin-ref tree: DEFAULT  args: --dpparttree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:35.908","start":"2025-10-17 15:38:36.005","complete":"2025-10-17 15:38:38.311","duration":"2.4s","realtime":"1s","%cpu":"39.0%","%mem":"0.0%","rss":"6.1 MB","vmem":"8.6 MB","peak_rss":"6.1 MB","peak_vmem":"8.6 MB","rchar":"991.1 KB","wchar":"11.2 KB","syscr":"1497","syscw":"259","read_bytes":"164 KB","write_bytes":"13.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/e2\/340e4a87e39b27af4beb10ce3ffae1","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        --dpparttree \\\n        toxin-ref.fa \\\n        > toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"21","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.19062509525","co2e":"0.57150004572","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"51","hash":"5e\/94a732","native_id":"3946274","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref tree: DEFAULT  args: -reg_nseq_3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:38.318","start":"2025-10-17 15:38:38.412","complete":"2025-10-17 15:38:48.200","duration":"9.9s","realtime":"8s","%cpu":"187.9%","%mem":"0.3%","rss":"28.2 MB","vmem":"541.6 MB","peak_rss":"28.2 MB","peak_vmem":"604.7 MB","rchar":"4.8 MB","wchar":"52.7 KB","syscr":"2908","syscw":"352","read_bytes":"0","write_bytes":"334.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5e\/94a7321f77b7de2641403ad259703a","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq toxin-ref.fa                           -reg_nseq 3 -reg  -reg_method famsa_msa -output fasta_aln         -reg_thread 2         -outfile toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1082","inv_ctxt":"1740","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"36.409721858125","co2e":"17.4766664919","co2eMarket":"-","time":"0.0022222222","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"187.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"49","hash":"a5\/6574f9","native_id":"3946456","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.4.1--h9ee0642_0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:39.389","start":"2025-10-17 15:38:39.480","complete":"2025-10-17 15:38:41.190","duration":"1.8s","realtime":"0ms","%cpu":"75.7%","%mem":"0.1%","rss":"13.3 MB","vmem":"1.1 GB","peak_rss":"14.2 MB","peak_vmem":"1.1 GB","rchar":"89.3 KB","wchar":"5.5 KB","syscr":"208","syscw":"115","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a5\/6574f9be8e1623ad49486203d12d9f","script":"\n    famsa  \\\n         \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"11","inv_ctxt":"31","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"75.7","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"41","hash":"3e\/bcfb71","native_id":"3946498","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-5cd0277547c6b33133225c8ce14c0cf2a4396ea2:0a70b6d89a3e06fbdc4a735461e8b98ff32ee5de-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:39.544","start":"2025-10-17 15:38:39.641","complete":"2025-10-17 15:38:41.324","duration":"1.8s","realtime":"0ms","%cpu":"28.2%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"109.1 KB","wchar":"4.6 KB","syscr":"248","syscw":"33","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3e\/bcfb71e2ba1668565e422982c6dfb5","script":"\n    error_handler() {\n    exit_code=$?\n        if [ $exit_code -eq 132 ]; then\n            echo \"KALIGN failed because is incompatible with some CPU types, see https:\/\/github.com\/TimoLassmann\/kalign\/issues\/46.\"\n        else\n            trap - ERR\n            return $exit_code\n        fi\n    }\n\n    trap \'error_handler\' ERR\n\n    unpigz -cdf toxin-ref.fa | \\\n    kalign \\\n         \\\n        -n 2 \\\n        -o toxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN\":\n        kalign: $(echo $(kalign -v) | sed \'s\/kalign \/\/g\' )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"7","inv_ctxt":"4","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"28.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"47","hash":"27\/a1c836","native_id":"3946657","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:41.197","start":"2025-10-17 15:38:41.290","complete":"2025-10-17 15:38:44.118","duration":"2.9s","realtime":"1s","%cpu":"37.5%","%mem":"0.1%","rss":"7.3 MB","vmem":"9.6 MB","peak_rss":"7.3 MB","peak_vmem":"9.6 MB","rchar":"991 KB","wchar":"10.5 KB","syscr":"1498","syscw":"226","read_bytes":"0","write_bytes":"21.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/27\/a1c8363fd72a4bfeb3154778799ff6","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        toxin-ref.fa \\\n        > toxin-ref_DEFAULT-args-default_MAFFT-args-default.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"25","inv_ctxt":"22","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.156770925875","co2e":"0.55525004442","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"33","hash":"5c\/65869a","native_id":"3946687","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:41.334","start":"2025-10-17 15:38:41.423","complete":"2025-10-17 15:38:43.850","duration":"2.5s","realtime":"1s","%cpu":"37.6%","%mem":"0.1%","rss":"7.4 MB","vmem":"9.6 MB","peak_rss":"7.4 MB","peak_vmem":"9.6 MB","rchar":"979 KB","wchar":"4.3 KB","syscr":"1498","syscw":"164","read_bytes":"16 KB","write_bytes":"20.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5c\/65869a6e7c77799f32c6e57d9337d0","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        setoxin-ref.fa \\\n        > seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"28","inv_ctxt":"29","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.1590278705","co2e":"0.55633337784","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"36","hash":"96\/cd03b6","native_id":"3946899","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-8eb01a3c2755c935d070dd03ff2dee698eeb4466:ceb6e65e00346ed20d0d8078dddf9858a7af0fe2-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:42.280","start":"2025-10-17 15:38:42.376","complete":"2025-10-17 15:38:43.773","duration":"1.5s","realtime":"0ms","%cpu":"40.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"115.5 KB","wchar":"2.2 KB","syscr":"299","syscw":"1353","read_bytes":"96 KB","write_bytes":"396 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/96\/cd03b633776a524f2d36b08d8cd805","script":"\n    muscle \\\n        -super5 setoxin-ref.fa \\\n         \\\n        -threads 2 \\\n        -output seatoxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln\n\n\n    # output may be multiple files if -perm all is set\n    # compress these individually if set to compress output\n    if false; then\n        pigz -p 2 *.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN\":\n        muscle: $(muscle -version | head -n 1 | cut -d \' \' -f 2 | sed \'s\/.linux64\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"43","hash":"6f\/fae71b","native_id":"3947111","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:43.779","start":"2025-10-17 15:38:43.852","complete":"2025-10-17 15:39:05.255","duration":"21.5s","realtime":"8s","%cpu":"100.2%","%mem":"0.5%","rss":"44.6 MB","vmem":"622.9 MB","peak_rss":"44.6 MB","peak_vmem":"686.9 MB","rchar":"18.9 MB","wchar":"643.2 KB","syscr":"18110","syscw":"5611","read_bytes":"32 KB","write_bytes":"940.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6f\/fae71b875764d25e5f50c38c2dc350","script":"\n    magus \\\n        -np 2 \\\n        -i toxin-ref.fa \\\n        -d .\/ \\\n        -o toxin-ref_DEFAULT-args-default_MAGUS-args-default.aln \\\n         \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"475","inv_ctxt":"686","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"20.57499979425","co2e":"9.87599990124","co2eMarket":"-","time":"0.0022222222","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"100.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"37","hash":"77\/1442cd","native_id":"3947127","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-12eba4a074f913c639117640936668f5a6a01da6:425707898cf4f85051b77848be253b88f1d2298a-0","tag":"seatoxin-ref tree: DEFAULT  args: --dpparttree","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:43.858","start":"2025-10-17 15:38:43.951","complete":"2025-10-17 15:38:46.541","duration":"2.7s","realtime":"0ms","%cpu":"38.8%","%mem":"0.0%","rss":"6.3 MB","vmem":"8.6 MB","peak_rss":"6.3 MB","peak_vmem":"8.6 MB","rchar":"979 KB","wchar":"4.4 KB","syscr":"1497","syscw":"168","read_bytes":"0","write_bytes":"12.4 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/77\/1442cd131e38dddab926cf84748204","script":"\n    mafft \\\n        --thread 2 \\\n         \\\n         \\\n         \\\n         \\\n         \\\n        --dpparttree \\\n        setoxin-ref.fa \\\n        > seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN\":\n        mafft: $(mafft --version 2>&1 | sed \'s\/^v\/\/\' | sed \'s\/ (.*)\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"17","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"38.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"42","hash":"ad\/36d18c","native_id":"3947190","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-4cefc38542f86c17596c29b35a059de10387c6a7:adbe4fbad680f9beb083956d79128039a727e7b3-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:44.125","start":"2025-10-17 15:38:44.218","complete":"2025-10-17 15:38:45.908","duration":"1.8s","realtime":"0ms","%cpu":"44.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"102.2 KB","wchar":"2.1 KB","syscr":"227","syscw":"20","read_bytes":"764 KB","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ad\/36d18c3927b1daaf2b33159fe61e8f","script":"\n    clustalo         -i toxin-ref.fa                                                      --threads=2                  -o toxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN\":\n        clustalo: $( clustalo --version )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"44","hash":"5e\/d57124","native_id":"3947430","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-8eb01a3c2755c935d070dd03ff2dee698eeb4466:ceb6e65e00346ed20d0d8078dddf9858a7af0fe2-0","tag":"toxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:45.913","start":"2025-10-17 15:38:46.008","complete":"2025-10-17 15:38:47.864","duration":"2s","realtime":"0ms","%cpu":"64.9%","%mem":"0.1%","rss":"8 MB","vmem":"11.3 MB","peak_rss":"8 MB","peak_vmem":"11.4 MB","rchar":"117.2 KB","wchar":"4.1 KB","syscr":"322","syscw":"1837","read_bytes":"0","write_bytes":"1.8 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5e\/d57124124b734ad16a8ff190a77b30","script":"\n    muscle \\\n        -super5 toxin-ref.fa \\\n         \\\n        -threads 2 \\\n        -output toxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln\n\n\n    # output may be multiple files if -perm all is set\n    # compress these individually if set to compress output\n    if false; then\n        pigz -p 2 *.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN\":\n        muscle: $(muscle -version | head -n 1 | cut -d \' \' -f 2 | sed \'s\/.linux64\/\/\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"9","inv_ctxt":"56","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"64.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"32","hash":"4e\/ed5324","native_id":"3947551","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-4cefc38542f86c17596c29b35a059de10387c6a7:adbe4fbad680f9beb083956d79128039a727e7b3-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:46.547","start":"2025-10-17 15:38:46.642","complete":"2025-10-17 15:38:48.189","duration":"1.6s","realtime":"0ms","%cpu":"26.2%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"99.9 KB","wchar":"731 B","syscr":"227","syscw":"20","read_bytes":"0","write_bytes":"401 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/4e\/ed5324e3886c50b562aaa986fa5dc7","script":"\n    clustalo         -i setoxin-ref.fa                                                      --threads=2                  -o seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN\":\n        clustalo: $( clustalo --version )\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"26.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"34","hash":"4a\/a882d6","native_id":"3947725","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-ae4ea1182e75371808710b6c081bef8b228c4815:10b41722a6b9471a0945fe6baeb9aff444d8eb1d-0","tag":"seatoxin-ref tree: DEFAULT","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:47.871","start":"2025-10-17 15:38:47.965","complete":"2025-10-17 15:39:05.427","duration":"17.6s","realtime":"6s","%cpu":"85.0%","%mem":"0.5%","rss":"44.4 MB","vmem":"272.6 MB","peak_rss":"44.4 MB","peak_vmem":"336.6 MB","rchar":"18.3 MB","wchar":"241.4 KB","syscr":"18068","syscw":"2789","read_bytes":"0","write_bytes":"714.7 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/4a\/a882d6173a23c114fd660881acef0b","script":"\n    magus \\\n        -np 2 \\\n        -i setoxin-ref.fa \\\n        -d .\/ \\\n        -o seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.aln \\\n         \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN\":\n        MAGUS: $(magus --version)\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"572","inv_ctxt":"333","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"13.372916934125","co2e":"6.41900012838","co2eMarket":"-","time":"0.0016666667","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"85.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"35","hash":"6d\/a52445","native_id":"3947780","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:48.200","start":"2025-10-17 15:38:48.301","complete":"2025-10-17 15:38:51.322","duration":"3.1s","realtime":"1s","%cpu":"98.0%","%mem":"0.4%","rss":"35.1 MB","vmem":"46 MB","peak_rss":"35.1 MB","peak_vmem":"46 MB","rchar":"739.2 KB","wchar":"18 KB","syscr":"943","syscw":"126","read_bytes":"0","write_bytes":"121.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6d\/a52445ee20069dade26e364700fab4","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq setoxin-ref.fa                           -reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln         -reg_thread 2         -outfile seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"72","inv_ctxt":"48","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.522222424","co2e":"1.21066676352","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"98.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"39","hash":"86\/ee78df","native_id":"3947782","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref tree: DEFAULT  args: -reg_nseq_3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:48.212","start":"2025-10-17 15:38:48.302","complete":"2025-10-17 15:38:51.209","duration":"3s","realtime":"1s","%cpu":"107.1%","%mem":"0.2%","rss":"19.6 MB","vmem":"25.1 MB","peak_rss":"19.6 MB","peak_vmem":"25.1 MB","rchar":"1.1 MB","wchar":"29.4 KB","syscr":"1162","syscw":"152","read_bytes":"0","write_bytes":"153.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/86\/ee78df29096e45a68f93a09d40c92f","script":"\n    export TEMP=\'.\/\'\n    t_coffee -reg         -seq setoxin-ref.fa                           -reg_nseq 3 -reg  -reg_method famsa_msa -output fasta_aln         -reg_thread 2         -outfile seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln\n\n    if [ \"false\" = true ]; then\n        pigz -cp 2 < stdout > seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz\n        rm stdout\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"81","inv_ctxt":"29","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.727604384875","co2e":"1.30925010474","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"107.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"46","hash":"57\/c0ad2f","native_id":"3948219","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN","module":"-","container":"quay.io\/nf-core\/multiplesequencealign_upp2:4.5.5","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:38:51.218","start":"2025-10-17 15:38:51.310","complete":"2025-10-17 15:39:05.362","duration":"14.1s","realtime":"5.7s","%cpu":"90.0%","%mem":"1.7%","rss":"132.6 MB","vmem":"743.9 MB","peak_rss":"133.2 MB","peak_vmem":"807.9 MB","rchar":"19.9 MB","wchar":"423.1 KB","syscr":"17729","syscw":"3221","read_bytes":"8.1 MB","write_bytes":"788.9 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/57\/c0ad2f4eec7301fd57e8c3c5f8ec3c","script":"\n\n    if [ \"docker\" = \'singularity\' ]; then\n        export CONDA_PREFIX=\"\/opt\/conda\/\"\n        export PASTA_TOOLS_DEVDIR=\"\/opt\/conda\/bin\/\"\n    fi\n\n    run_upp.py \\\n        -m amino \\\n        -x 2 \\\n        -s toxin-ref.fa \\\n        -d . \\\n        -o toxin-ref_DEFAULT-args-default_UPP-args-default \\\n        -p .\/upp-temporary\n\n    mv toxin-ref_DEFAULT-args-default_UPP-args-default_alignment.fasta toxin-ref_DEFAULT-args-default_UPP-args-default.aln\n\n    if false; then\n        pigz -p 2 toxin-ref_DEFAULT-args-default_UPP-args-default.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN\":\n        upp: $(run_upp.py -v | grep \"run_upp\" | cut -f2 -d\" \")\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1334","inv_ctxt":"601","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"13.300666854","co2e":"6.38432008992","co2eMarket":"-","time":"0.0015777778","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"90.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"40","hash":"14\/c768d2","native_id":"3948280","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN","module":"-","container":"registry.hub.docker.com\/felbecker\/learnmsa:2.0.9","tag":"toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","status":"FAILED","exit":"125","submit":"2025-10-17 15:38:51.328","start":"2025-10-17 15:38:51.422","complete":"2025-10-17 15:41:31.501","duration":"2m 40s","realtime":"2m 40s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/14\/c768d2a548be1c5a557721aec4e4a1","script":"\n    learnMSA \\\n        -i toxin-ref.fa \\\n        -o \"toxin-ref_DEFAULT-args-default_LEARNMSA-args---use_language_model_--sequence_weights.aln\" \\\n        --use_language_model --sequence_weights\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN\":\n        learnmsa: $(learnMSA -h | grep \'version\' | awk -F \'version \' \'{print $2}\' | awk \'{print $1}\' | sed \'s\/)\/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1067.97149540575","co2e":"512.62631779476","co2eMarket":"-","time":"0.0444663889","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","cpu_model":"-"}, {"task_id":"38","hash":"bc\/9b5fae","native_id":"3949584","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN","module":"-","container":"registry.hub.docker.com\/felbecker\/learnmsa:2.0.9","tag":"seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","status":"FAILED","exit":"125","submit":"2025-10-17 15:39:05.261","start":"2025-10-17 15:39:05.356","complete":"2025-10-17 15:41:15.312","duration":"2m 10s","realtime":"2m 10s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/bc\/9b5fae3e26729c55fb1b9354fc9550","script":"\n    learnMSA \\\n        -i setoxin-ref.fa \\\n        -o \"seatoxin-ref_DEFAULT-args-default_LEARNMSA-args---use_language_model_--sequence_weights.aln\" \\\n        --use_language_model --sequence_weights\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN\":\n        learnmsa: $(learnMSA -h | grep \'version\' | awk -F \'version \' \'{print $2}\' | awk \'{print $1}\' | sed \'s\/)\/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"867.00506415575","co2e":"416.16243079476","co2eMarket":"-","time":"0.0360988889","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","cpu_model":"-"}, {"task_id":"45","hash":"0f\/6d0d55","native_id":"3949615","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN","module":"-","container":"quay.io\/nf-core\/multiplesequencealign_upp2:4.5.5","tag":"seatoxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:05.368","start":"2025-10-17 15:39:05.428","complete":"2025-10-17 15:39:13.097","duration":"7.7s","realtime":"6.3s","%cpu":"65.5%","%mem":"1.7%","rss":"133.6 MB","vmem":"746.2 MB","peak_rss":"135 MB","peak_vmem":"810.4 MB","rchar":"17.1 MB","wchar":"185.7 KB","syscr":"12598","syscw":"1698","read_bytes":"1.2 MB","write_bytes":"484 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/0f\/6d0d55f5c2f5b3154b95cf1fcef25f","script":"\n\n    if [ \"docker\" = \'singularity\' ]; then\n        export CONDA_PREFIX=\"\/opt\/conda\/\"\n        export PASTA_TOOLS_DEVDIR=\"\/opt\/conda\/bin\/\"\n    fi\n\n    run_upp.py \\\n        -m amino \\\n        -x 2 \\\n        -s setoxin-ref.fa \\\n        -d . \\\n        -o seatoxin-ref_DEFAULT-args-default_UPP-args-default \\\n        -p .\/upp-temporary\n\n    mv seatoxin-ref_DEFAULT-args-default_UPP-args-default_alignment.fasta seatoxin-ref_DEFAULT-args-default_UPP-args-default.aln\n\n    if false; then\n        pigz -p 2 seatoxin-ref_DEFAULT-args-default_UPP-args-default.aln\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN\":\n        upp: $(run_upp.py -v | grep \"run_upp\" | cut -f2 -d\" \")\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"891","inv_ctxt":"543","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"11.2259768686875","co2e":"5.38846889697","co2eMarket":"-","time":"0.0017433333","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"65.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"54","hash":"ad\/561d6d","native_id":"3949638","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:05.434","start":"2025-10-17 15:39:05.527","complete":"2025-10-17 15:39:08.662","duration":"3.2s","realtime":"177ms","%cpu":"34.1%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"125.2 KB","wchar":"4.2 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ad\/561d6df39984543a9cccf199449239","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$total_gaps,$avg_gaps\" >> toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"8","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.1911662754375","co2e":"0.09175981221","co2eMarket":"-","time":"4.91667E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"34.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"55","hash":"b8\/f98978","native_id":"3950005","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:08.675","start":"2025-10-17 15:39:08.763","complete":"2025-10-17 15:39:11.782","duration":"3.1s","realtime":"1s","%cpu":"39.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"86.8 KB","wchar":"1.2 KB","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"903 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/b8\/f98978b8ccf766537323ffa5e2a572","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"2","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.197395929125","co2e":"0.57475004598","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"56","hash":"99\/0324ab","native_id":"3950334","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:11.832","start":"2025-10-17 15:39:11.882","complete":"2025-10-17 15:39:16.630","duration":"4.8s","realtime":"4s","%cpu":"81.0%","%mem":"0.9%","rss":"75.3 MB","vmem":"91.3 MB","peak_rss":"75.3 MB","peak_vmem":"91.3 MB","rchar":"3 MB","wchar":"2.7 MB","syscr":"1399","syscw":"1382","read_bytes":"32 KB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/99\/0324ab042a9ef2138d5e98ade6f255","script":"\n    export TEMP=\'.\/\'\n    filename=toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    if [[ $(basename toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln) == *.gz ]] ; then\n        unpigz -f toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n        filename=toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"203","inv_ctxt":"734","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"8.554166581125","co2e":"4.10599995894","co2eMarket":"-","time":"0.0011111111","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"81.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"58","hash":"a7\/e5e123","native_id":"3950505","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:13.104","start":"2025-10-17 15:39:13.199","complete":"2025-10-17 15:39:15.639","duration":"2.5s","realtime":"0ms","%cpu":"57.9%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"292.4 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a7\/e5e1231ed2af4a57783db30e639b27","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"57.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"57","hash":"51\/0da7d0","native_id":"3950939","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:15.643","start":"2025-10-17 15:39:15.739","complete":"2025-10-17 15:39:18.167","duration":"2.5s","realtime":"1s","%cpu":"46.5%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"292.4 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/51\/0da7d0c7d3e969fa6ce6d9aace1386","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.359895942125","co2e":"0.65275005222","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"46.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"60","hash":"23\/8d7873","native_id":"3951134","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:16.641","start":"2025-10-17 15:39:16.729","complete":"2025-10-17 15:39:19.618","duration":"3s","realtime":"167ms","%cpu":"34.0%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"390.2 KB","wchar":"2.3 KB","syscr":"501","syscw":"47","read_bytes":"80 KB","write_bytes":"276 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/23\/8d78739cb774d83c33164bd2a84878","script":"\n    # Extract plddt per protein\n    echo \"id,seq_id,plddt\" > seatoxin-ref_full_plddt.csv\n    for structure in $(ls *.pdb); do\n        protein_name=$(basename \"$structure\" .pdb)\n        avg=$(awk \'{if($1==\"ATOM\" && $3==\"CA\") print $11}\' \"$structure\" | awk \'{sum+=$1} END {print sum\/NR}\')\n        echo \"seatoxin-ref,$protein_name,$avg\" >> seatoxin-ref_full_plddt.csv\n    done\n\n    # Extract plddt summary\n    echo \"id,plddt\" > seatoxin-ref_plddt_summary.csv\n    plddt=$(awk -F, \'NR>1 {sum+=$2} END {print sum\/NR}\' seatoxin-ref_full_plddt.csv); echo \"seatoxin-ref,$plddt\" >> seatoxin-ref_plddt_summary.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"13","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.179988932","co2e":"0.08639468736","co2eMarket":"-","time":"4.63889E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"34.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"59","hash":"c7\/8b49aa","native_id":"3951218","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB","module":"-","container":"community.wave.seqera.io\/library\/foldmason:2.7bd21ed--e7f739473ad6578d","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:18.174","start":"2025-10-17 15:39:18.267","complete":"2025-10-17 15:39:22.021","duration":"3.8s","realtime":"500ms","%cpu":"30.1%","%mem":"0.1%","rss":"11.2 MB","vmem":"38.9 MB","peak_rss":"11.2 MB","peak_vmem":"38.9 MB","rchar":"355.2 KB","wchar":"6.3 KB","syscr":"330","syscw":"126","read_bytes":"192 KB","write_bytes":"4.6 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/c7\/8b49aa316c9b67574ed672ba44a390","script":"\n    foldmason createdb \\\n        1sh1.pdb 1ahl.pdb 1apf.pdb 1atx.pdb 1bds.pdb \\\n        seatoxin-ref \\\n         \\\n        --threads 2\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB\":\n        foldmason: $(foldmason | grep \"foldmason Version:\" | cut -d\":\" -f 2 | awk \'{$1=$1;print}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"54","inv_ctxt":"13","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.4948785118125","co2e":"0.23754168567","co2eMarket":"-","time":"1.388889E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"30.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"61","hash":"34\/be4e8a","native_id":"3951544","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:19.624","start":"2025-10-17 15:39:19.719","complete":"2025-10-17 15:39:24.028","duration":"4.4s","realtime":"58ms","%cpu":"49.2%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"114.4 KB","wchar":"884 B","syscr":"307","syscw":"38","read_bytes":"64 KB","write_bytes":"180 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/34\/be4e8a3c457f4763c239095ed717e6","script":"\n    # Prepare templates\n    for structure in $(ls *.pdb); do\n        id=`echo $structure| awk  {\'gsub(\".pdb\", \"\", $0); print\'}`\n        echo -e \">\"$id \"_P_\" \"${id}\" >>seatoxin-ref_template.txt\n    done\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"19","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0824082765","co2e":"0.03955597272","co2eMarket":"-","time":"1.61111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"49.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"62","hash":"42\/0d4086","native_id":"3951796","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS","module":"-","container":"quay.io\/biocontainers\/csvtk:0.31.0--h9ee0642_0","tag":"summary_simstats","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:22.026","start":"2025-10-17 15:39:22.121","complete":"2025-10-17 15:39:25.553","duration":"3.5s","realtime":"0ms","%cpu":"43.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"73.8 KB","wchar":"468 B","syscr":"186","syscw":"19","read_bytes":"16 KB","write_bytes":"141 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/42\/0d4086b9997f7d6f326850e65c1463","script":"\n    csvtk \\\n        concat \\\n         \\\n        --num-cpus 2 \\\n        --delimiter \",\" \\\n        --out-delimiter \",\" \\\n        --out-file summary_simstats.csv \\\n        inputs\/csv1\/toxin-ref.sim_tot inputs\/csv2\/seatoxin-ref.sim_tot\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS\":\n        csvtk: $(echo $( csvtk version | sed -e \"s\/csvtk v\/\/g\" ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"63","hash":"d4\/5e3777","native_id":"3951946","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:24.043","start":"2025-10-17 15:39:24.128","complete":"2025-10-17 15:39:27.467","duration":"3.4s","realtime":"95ms","%cpu":"39.2%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"119.3 KB","wchar":"1.4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"545 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/d4\/5e377747dc210add63af499e5aa79f","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.11353824225","co2e":"0.05449835628","co2eMarket":"-","time":"2.63889E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"65","hash":"49\/b9014d","native_id":"3952290","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:25.559","start":"2025-10-17 15:39:25.653","complete":"2025-10-17 15:39:29.594","duration":"4s","realtime":"0ms","%cpu":"37.6%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"648 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"345 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/49\/b9014d52cef49bdf3de75674b793dd","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"4","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"64","hash":"e6\/4eb766","native_id":"3952434","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:27.473","start":"2025-10-17 15:39:27.568","complete":"2025-10-17 15:39:30.044","duration":"2.6s","realtime":"1s","%cpu":"48.4%","%mem":"0.0%","rss":"2.9 MB","vmem":"4.3 MB","peak_rss":"2.9 MB","peak_vmem":"4.3 MB","rchar":"391.6 KB","wchar":"136.5 KB","syscr":"701","syscw":"656","read_bytes":"32 KB","write_bytes":"226.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/e6\/4eb766a97e3d961c6322c84bfa334b","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    if [[ $(basename seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n        filename=seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"7","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.40277789","co2e":"0.6733333872","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"48.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"67","hash":"3c\/8ee85f","native_id":"3952747","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:29.606","start":"2025-10-17 15:39:29.694","complete":"2025-10-17 15:39:32.226","duration":"2.6s","realtime":"0ms","%cpu":"44.3%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"256.6 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"16 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3c\/8ee85ff5469526b73dee5eab2771c3","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"3","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"66","hash":"f7\/c88f6a","native_id":"3952809","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:30.059","start":"2025-10-17 15:39:30.145","complete":"2025-10-17 15:39:32.316","duration":"2.3s","realtime":"0ms","%cpu":"42.9%","%mem":"0.1%","rss":"7 MB","vmem":"12.5 MB","peak_rss":"7 MB","peak_vmem":"12.5 MB","rchar":"256.6 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"16 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/f7\/c88f6a12463d26b1857c693fcfe3c4","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"31","inv_ctxt":"15","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"42.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"68","hash":"6e\/16d0e0","native_id":"3953023","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:32.235","start":"2025-10-17 15:39:32.317","complete":"2025-10-17 15:39:34.876","duration":"2.6s","realtime":"0ms","%cpu":"33.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"657 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"354 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6e\/16d0e0889dab97a5c67aabfccf645b","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"33.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"71","hash":"89\/8660b0","native_id":"3953058","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:32.333","start":"2025-10-17 15:39:32.416","complete":"2025-10-17 15:39:34.894","duration":"2.6s","realtime":"109ms","%cpu":"40.3%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"119.6 KB","wchar":"1.4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"565 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/89\/8660b0258e87ae57bbaf952039dabb","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"14","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.132976312875","co2e":"0.06382863018","co2eMarket":"-","time":"3.02778E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"69","hash":"48\/10cdaa","native_id":"3953530","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:34.902","start":"2025-10-17 15:39:34.994","complete":"2025-10-17 15:39:37.638","duration":"2.7s","realtime":"0ms","%cpu":"49.3%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"391.1 KB","wchar":"136.1 KB","syscr":"701","syscw":"654","read_bytes":"0","write_bytes":"226.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/48\/10cdaa6da12bb595215052e9b0623b","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    if [[ $(basename seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n        filename=seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"49.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"70","hash":"ee\/a81f26","native_id":"3953539","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:34.909","start":"2025-10-17 15:39:34.995","complete":"2025-10-17 15:39:37.617","duration":"2.7s","realtime":"0ms","%cpu":"37.1%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"256.7 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ee\/a81f26a64b252bcdc4a31fc6d051e5","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"72","hash":"6f\/78bcec","native_id":"3953788","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:37.630","start":"2025-10-17 15:39:37.739","complete":"2025-10-17 15:39:40.801","duration":"3.2s","realtime":"0ms","%cpu":"44.4%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"256.8 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/6f\/78bcecaa97d83b0a353d7c087118f8","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,FAMSA,-gt upgma -medoidtree,-gt_upgma_-medoidtree,FAMSA,,default,$scores\" >> \"seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"17","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"44.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"73","hash":"a5\/9af165","native_id":"3953789","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:37.665","start":"2025-10-17 15:39:37.744","complete":"2025-10-17 15:39:40.759","duration":"3.1s","realtime":"0ms","%cpu":"33.8%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"637 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"343 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a5\/9af165ec3d8b9a165fad0bdc3878a6","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"33.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"74","hash":"85\/71ca89","native_id":"3954385","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:40.774","start":"2025-10-17 15:39:40.802","complete":"2025-10-17 15:39:44.903","duration":"4.1s","realtime":"0ms","%cpu":"51.3%","%mem":"0.1%","rss":"6.9 MB","vmem":"12.5 MB","peak_rss":"6.9 MB","peak_vmem":"12.5 MB","rchar":"390.8 KB","wchar":"135.8 KB","syscr":"701","syscw":"654","read_bytes":"32 KB","write_bytes":"226.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/85\/71ca8973e3f7a523fcb6ab9e1c2dda","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n    if [[ $(basename seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n        filename=seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"19","inv_ctxt":"17","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"51.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"75","hash":"65\/0479c2","native_id":"3954395","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:40.815","start":"2025-10-17 15:39:40.901","complete":"2025-10-17 15:39:44.977","duration":"4.2s","realtime":"98ms","%cpu":"34.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"119.3 KB","wchar":"1.3 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"533 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/65\/0479c27e9006d85716565c5404a197","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"14","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.106728037875","co2e":"0.05122945818","co2eMarket":"-","time":"2.72222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"34.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"76","hash":"7b\/f1b211","native_id":"3955000","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:44.908","start":"2025-10-17 15:39:44.977","complete":"2025-10-17 15:39:47.120","duration":"2.2s","realtime":"0ms","%cpu":"41.7%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"256.5 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7b\/f1b211f548821a4007e69672188c1e","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"41.7","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"77","hash":"7a\/3fd442","native_id":"3955035","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:44.986","start":"2025-10-17 15:39:45.077","complete":"2025-10-17 15:39:47.080","duration":"2.1s","realtime":"0ms","%cpu":"42.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"256.5 KB","wchar":"2.9 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7a\/3fd4422516841159828c88ed6c1ddf","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,KALIGN,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"42.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"78","hash":"57\/f1ac83","native_id":"3955278","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:47.089","start":"2025-10-17 15:39:47.121","complete":"2025-10-17 15:39:52.535","duration":"5.4s","realtime":"3s","%cpu":"83.1%","%mem":"0.9%","rss":"75.6 MB","vmem":"91.3 MB","peak_rss":"75.6 MB","peak_vmem":"91.3 MB","rchar":"3 MB","wchar":"2.7 MB","syscr":"1399","syscw":"1382","read_bytes":"32 KB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/57\/f1ac83991bb454269bf13dfd7b1161","script":"\n    export TEMP=\'.\/\'\n    filename=toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    if [[ $(basename toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln) == *.gz ]] ; then\n        unpigz -f toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n        filename=toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"232","inv_ctxt":"253","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"6.5578122376875","co2e":"3.14774987409","co2eMarket":"-","time":"8.333333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"83.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"79","hash":"93\/9525e6","native_id":"3955344","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:47.136","start":"2025-10-17 15:39:47.220","complete":"2025-10-17 15:39:49.448","duration":"2.3s","realtime":"0ms","%cpu":"43.6%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"86.8 KB","wchar":"1.2 KB","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"890 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/93\/9525e6bdcc9b8f6e82071262eec268","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"80","hash":"ae\/612f8e","native_id":"3955620","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:49.455","start":"2025-10-17 15:39:49.549","complete":"2025-10-17 15:39:51.970","duration":"2.5s","realtime":"76ms","%cpu":"43.0%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"125.2 KB","wchar":"4.2 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/ae\/612f8e8d5e664c4d4c6c995dff7adc","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$total_gaps,$avg_gaps\" >> toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"10","inv_ctxt":"8","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.097348559875","co2e":"0.04672730874","co2eMarket":"-","time":"2.11111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"81","hash":"54\/73dbfe","native_id":"3956014","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:51.980","start":"2025-10-17 15:39:52.071","complete":"2025-10-17 15:39:54.761","duration":"2.8s","realtime":"0ms","%cpu":"57.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"292.3 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/54\/73dbfe19891a4a781754b707a83d78","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"57.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"82","hash":"d7\/b5238a","native_id":"3956076","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:52.541","start":"2025-10-17 15:39:52.635","complete":"2025-10-17 15:39:54.789","duration":"2.2s","realtime":"0ms","%cpu":"52.2%","%mem":"0.1%","rss":"12.3 MB","vmem":"24.8 MB","peak_rss":"12.3 MB","peak_vmem":"24.8 MB","rchar":"292.3 KB","wchar":"10.3 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/d7\/b5238acb8a97630f43bf3c88c3a610","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"33","inv_ctxt":"14","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"52.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"84","hash":"84\/6592a7","native_id":"3956306","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:54.777","start":"2025-10-17 15:39:54.789","complete":"2025-10-17 15:39:57.742","duration":"3s","realtime":"0ms","%cpu":"40.0%","%mem":"0.1%","rss":"7.3 MB","vmem":"12.5 MB","peak_rss":"7.3 MB","peak_vmem":"12.5 MB","rchar":"391.1 KB","wchar":"136 KB","syscr":"701","syscw":"654","read_bytes":"32 KB","write_bytes":"226.2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/84\/6592a7ccd04d1553531f1f4d2ff948","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    if [[ $(basename seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n        filename=seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"31","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"165","hash":"3f\/faa3cb","native_id":"3956340","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:54.827","start":"2025-10-17 15:39:54.890","complete":"2025-10-17 15:39:57.686","duration":"2.9s","realtime":"0ms","%cpu":"30.1%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"645 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"351 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3f\/faa3cb59e21347cff5fc5f69b2d8e5","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln > seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"30.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"83","hash":"fb\/0d20be","native_id":"3956816","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:57.692","start":"2025-10-17 15:39:57.743","complete":"2025-10-17 15:40:00.246","duration":"2.6s","realtime":"80ms","%cpu":"37.0%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"119.7 KB","wchar":"1.4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"598 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fb\/0d20be3c23cae9b5ba16e7e13fce61","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"16","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.09163879725","co2e":"0.04398662268","co2eMarket":"-","time":"2.22222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"37.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"86","hash":"51\/b3ff56","native_id":"3956844","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:39:57.756","start":"2025-10-17 15:39:57.842","complete":"2025-10-17 15:40:00.162","duration":"2.4s","realtime":"0ms","%cpu":"40.5%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"642 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"348 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/51\/b3ff569a8c8ddcaefc046d7bdf5027","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"11","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"40.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"85","hash":"88\/2e27d3","native_id":"3957012","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:00.172","start":"2025-10-17 15:40:00.246","complete":"2025-10-17 15:40:03.978","duration":"3.8s","realtime":"1s","%cpu":"38.5%","%mem":"0.1%","rss":"8.6 MB","vmem":"16.6 MB","peak_rss":"8.6 MB","peak_vmem":"16.6 MB","rchar":"256.8 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/88\/2e27d3e141a924f73d5f7e3708e46a","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"37","inv_ctxt":"17","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.179340372125","co2e":"0.56608337862","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"38.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"87","hash":"0b\/391a50","native_id":"3957043","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:00.259","start":"2025-10-17 15:40:00.347","complete":"2025-10-17 15:40:02.961","duration":"2.7s","realtime":"1s","%cpu":"36.2%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"256.8 KB","wchar":"3 KB","syscr":"598","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/0b\/391a50ec7b3226037d26a9b6ca8bbe","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,CLUSTALO,,default,REGRESSIVE,-reg  -reg_method famsa_msa -reg_nseq 1000 -output fasta_aln,default,$scores\" >> \"seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"2","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.12743064575","co2e":"0.54116670996","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"36.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"88","hash":"05\/4ed726","native_id":"3957661","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:02.967","start":"2025-10-17 15:40:03.061","complete":"2025-10-17 15:40:06.318","duration":"3.4s","realtime":"105ms","%cpu":"42.9%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"124.6 KB","wchar":"4 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"1.9 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/05\/4ed726d0f2684d281f6ee72d00939d","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$total_gaps,$avg_gaps\" >> toxin-ref_FAMSA-args-default_MAGUS-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"12","inv_ctxt":"1","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.1342579659375","co2e":"0.06444382365","co2eMarket":"-","time":"2.91667E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"42.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"89","hash":"3b\/3df659","native_id":"3957774","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:03.985","start":"2025-10-17 15:40:04.078","complete":"2025-10-17 15:40:09.217","duration":"5.2s","realtime":"3s","%cpu":"80.5%","%mem":"0.9%","rss":"75.3 MB","vmem":"91 MB","peak_rss":"75.3 MB","peak_vmem":"91 MB","rchar":"3 MB","wchar":"2.7 MB","syscr":"1399","syscw":"1382","read_bytes":"32 KB","write_bytes":"2.8 MB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3b\/3df6591d52ba8028973c77a97ea7c1","script":"\n    export TEMP=\'.\/\'\n    filename=toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    if [[ $(basename toxin-ref_FAMSA-args-default_MAGUS-args-default.aln) == *.gz ]] ; then\n        unpigz -f toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n        filename=toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"229","inv_ctxt":"272","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"6.3817705780625","co2e":"3.06324987747","co2eMarket":"-","time":"8.333333E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"80.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"91","hash":"83\/efd2c9","native_id":"3958225","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:06.333","start":"2025-10-17 15:40:06.418","complete":"2025-10-17 15:40:08.115","duration":"1.8s","realtime":"0ms","%cpu":"50.0%","%mem":"0.0%","rss":"3.1 MB","vmem":"4.3 MB","peak_rss":"3.1 MB","peak_vmem":"4.3 MB","rchar":"86.7 KB","wchar":"1.2 KB","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"884 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/83\/efd2c91c913203035d6665e7129cb0","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: toxin-ref_FAMSA-args-default_MAGUS-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"6","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"50.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"90","hash":"fd\/546ad4","native_id":"3958405","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:08.139","start":"2025-10-17 15:40:08.218","complete":"2025-10-17 15:40:10.585","duration":"2.4s","realtime":"0ms","%cpu":"43.9%","%mem":"0.0%","rss":"2.8 MB","vmem":"4.3 MB","peak_rss":"2.8 MB","peak_vmem":"4.3 MB","rchar":"293.3 KB","wchar":"10.2 KB","syscr":"600","syscw":"46","read_bytes":"0","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/fd\/546ad4df7d67753420a669c9d4f52e","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"toxin-ref_FAMSA-args-default_MAGUS-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"9","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.9","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"92","hash":"3d\/814b06","native_id":"3958525","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:09.227","start":"2025-10-17 15:40:09.318","complete":"2025-10-17 15:40:12.534","duration":"3.3s","realtime":"1s","%cpu":"53.5%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"293.3 KB","wchar":"10.2 KB","syscr":"600","syscw":"46","read_bytes":"32 KB","write_bytes":"40.3 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/3d\/814b0663ee3ecdbb1d6c0f3c6c9180","script":"\n    # check whether it is compressed\n    if [[ \"toxin-ref_FAMSA-args-default_MAGUS-args-default.aln\" == *.gz ]]; then\n        unpigz -c toxin-ref_FAMSA-args-default_MAGUS-args-default.aln > uncompressed_msa.fa\n    else\n        mv toxin-ref_FAMSA-args-default_MAGUS-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 toxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"toxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"toxin-ref,FAMSA,,default,MAGUS,,default,$scores\" >> \"toxin-ref_FAMSA-args-default_MAGUS-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"6","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.517882065875","co2e":"0.72858339162","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"53.5","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"93","hash":"a5\/a77e58","native_id":"3958862","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:10.590","start":"2025-10-17 15:40:10.685","complete":"2025-10-17 15:40:14.553","duration":"4s","realtime":"1s","%cpu":"39.8%","%mem":"0.0%","rss":"1.9 MB","vmem":"4 MB","peak_rss":"1.9 MB","peak_vmem":"4 MB","rchar":"390.7 KB","wchar":"135.8 KB","syscr":"701","syscw":"654","read_bytes":"32 KB","write_bytes":"230.1 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/a5\/a77e58ad00d0bfd03e5f6abf03e965","script":"\n    export TEMP=\'.\/\'\n    filename=seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n    if [[ $(basename seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln) == *.gz ]] ; then\n        unpigz -f seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n        filename=seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\n    fi\n\n    # Bad hack to circumvent t_coffee bug\n    # Issue described already in: https:\/\/github.com\/cbcrg\/tcoffee\/issues\/3\n    # Add an A in front of filename if the file begins with A\n    first_letter_filename=${filename:0:1}\n    if [ \"$first_letter_filename\" == \"A\" ]; then input=\"A\"$filename; else input=$filename;  fi\n\n    t_coffee -infile $input         -evaluate -output=score_ascii                  -outfile seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,TCS\" > \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores\"\n\n    # Add values\n    scores=$(grep \'SCORE=\' seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs | cut -d \'=\' -f 2 )\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"1.20868065225","co2e":"0.58016671308","co2eMarket":"-","time":"2.777778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"39.8","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"96","hash":"7b\/9bbb8d","native_id":"3959045","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS","module":"-","container":"quay.io\/biocontainers\/pigz:2.8","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:12.550","start":"2025-10-17 15:40:12.635","complete":"2025-10-17 15:40:14.577","duration":"2s","realtime":"0ms","%cpu":"47.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"85.4 KB","wchar":"636 B","syscr":"203","syscw":"22","read_bytes":"32 KB","write_bytes":"342 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/7b\/9bbb8d2d6f2a8a259ca1160c618c75","script":"\n    # Note: needs --stdout for pigz to avoid the following issue:\n    #   pigz: skipping: seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln is a symbolic link\n    pigz --processes 2 --stdout --force  seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS\":\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz[[:space:]]*\/\/\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"3","inv_ctxt":"10","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0","co2e":"0.0","co2eMarket":"-","time":"0.0","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"47.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"94","hash":"18\/ea7999","native_id":"3959200","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:14.560","start":"2025-10-17 15:40:14.677","complete":"2025-10-17 15:40:17.852","duration":"3.3s","realtime":"98ms","%cpu":"41.4%","%mem":"0.0%","rss":"3.2 MB","vmem":"4.3 MB","peak_rss":"3.2 MB","peak_vmem":"4.3 MB","rchar":"119.3 KB","wchar":"1.3 KB","syscr":"296","syscw":"29","read_bytes":"48 KB","write_bytes":"532 B","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/18\/ea7999d4640bb1a6276a5d76941e38","script":"\n    sed \'s\/\\.\/-\/g\' seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$total_gaps,$avg_gaps\" >> seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"16","inv_ctxt":"5","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.12198948375","co2e":"0.0585549522","co2eMarket":"-","time":"2.72222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"41.4","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"95","hash":"bf\/8cd43f","native_id":"3959201","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","status":"FAILED","exit":"1","submit":"2025-10-17 15:40:14.585","start":"2025-10-17 15:40:14.678","complete":"2025-10-17 15:40:17.829","duration":"3.2s","realtime":"3.2s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/bf\/8cd43fe6d5b4df8d8791a4e6e8ffb9","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode sp         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,sp\" > \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_sp.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"21.0219845615","co2e":"10.09055258952","co2eMarket":"-","time":"8.752778E-4","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)","cpu_model":"-"}, {"task_id":"97","hash":"5d\/0a9534","native_id":"3959685","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC","module":"-","container":"quay.io\/biocontainers\/mulled-v2-a76a981c07359a31ff55b9dc13bd3da5ce1909c1:84c8f17f1259b49e2f7783b95b7a89c6f2cb199e-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","status":"FAILED","exit":"1","submit":"2025-10-17 15:40:17.842","start":"2025-10-17 15:40:17.952","complete":"2025-10-17 15:40:21.260","duration":"3.4s","realtime":"3.3s","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/5d\/0a953444a0e1d6c2e8a6b01a7e3eea","script":"\n    # check whether it is compressed\n    if [[ \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln\" == *.gz ]]; then\n        unpigz -c seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln > uncompressed_msa.fa\n    else\n        mv seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln uncompressed_msa.fa\n    fi\n\n    export TEMP=\'.\/\'\n    t_coffee -other_pg aln_compare         -al1 setoxin.ref         -al2 uncompressed_msa.fa         -compare_mode tc         | grep -v \"seq1\" | grep -v \'*\' |         awk \'{ print $4}\' ORS=\"\t\"         >> \"scores.txt\"\n\n    # Add metadata info to output file\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,tc\" > \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tc.scores\"\n\n    # Add values\n    scores=$(awk \'{sub(\/[[:space:]]+$\/, \"\")} 1\' scores.txt | tr -s \'[:blank:]\' \',\')\n    echo \"seatoxin-ref,DEFAULT,,default,FAMSA,,default,$scores\" >> \"seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tc.scores\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"22.06941415575","co2e":"10.59331879476","co2eMarket":"-","time":"9.188889E-4","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)","cpu_model":"-"}, {"task_id":"98","hash":"1b\/638c93","native_id":"3959686","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS","module":"-","container":"quay.io\/nf-core\/ubuntu:22.04","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 15:40:17.860","start":"2025-10-17 15:40:17.953","complete":"2025-10-17 15:40:21.289","duration":"3.4s","realtime":"71ms","%cpu":"57.1%","%mem":"0.0%","rss":"3 MB","vmem":"4.3 MB","peak_rss":"3 MB","peak_vmem":"4.3 MB","rchar":"125 KB","wchar":"4.1 KB","syscr":"296","syscw":"29","read_bytes":"0","write_bytes":"2 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/3b90429fd21b937459e23c535ef473b6\/work\/1b\/638c93206d6478344e1f24df45ea7c","script":"\n    sed \'s\/\\.\/-\/g\' toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas > toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_clean.aln\n    echo \"id,tree,args_tree,args_tree_clean,aligner,args_aligner,args_aligner_clean,total_gaps,avg_gaps\" > toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_gaps.csv\n    total_gaps=$(grep -v \">\" toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_clean.aln | awk -F \"-\" \'{total += NF-1;} END {print total}\');\n    nseq=$(grep -c \">\" toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_clean.aln);\n    avg_gaps=$(awk -v var1=\"$total_gaps\" -v var2=\"$nseq\" \'BEGIN { print var1 \/ var2 }\')\n    echo \"toxin-ref,DEFAULT,,default,MAFFT,--dpparttree,--dpparttree,$total_gaps,$avg_gaps\" >> toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_gaps_gaps.csv\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS\":\n        awk: $(awk -W version | grep \"awk\" | sed \'s\/mawk\/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"5","inv_ctxt":"3","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.113538240125","co2e":"0.05449835526","co2eMarket":"-","time":"1.97222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"57.1","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}],"summary":{"FAMSA_GUIDETREE":{"co2e":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"energy":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"co2e_non_cached":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"energy_non_cached":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0},"co2e_market":{},"energy_market":{"all":[0.0,0.0,0.0,0.0],"total":0.0,"mean":0.0,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","min":0.0,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)","q1":0.0,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)","q2":0.0,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)","q3":0.0,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)","max":0.0}},"UNTAR":{"co2e":{"all":[0.11967214398],"total":0.11967214398,"mean":0.11967214398,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.11967214398,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.11967214398,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.11967214398,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.11967214398,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.11967214398},"energy":{"all":[0.249316966625],"total":0.249316966625,"mean":0.249316966625,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.249316966625,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.249316966625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.249316966625,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.249316966625,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.249316966625},"co2e_non_cached":{"all":[0.11967214398],"total":0.11967214398,"mean":0.11967214398,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.11967214398,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.11967214398,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.11967214398,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.11967214398,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.11967214398},"energy_non_cached":{"all":[0.249316966625],"total":0.249316966625,"mean":0.249316966625,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.249316966625,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q1":0.249316966625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q2":0.249316966625,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","q3":0.249316966625,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","max":0.249316966625},"co2e_market":{},"energy_market":{"all":[0.249316966625],"total":0.249316966625,"mean":0.249316966625,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)","min":0.249316966625,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR 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tree: DEFAULT  args: --use_language_model_--sequence_weights)","max":1067.97149540575},"co2e_market":{},"energy_market":{"all":[867.00506415575,1067.97149540575],"total":1934.9765595615,"mean":967.48827978075,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","min":867.00506415575,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q1":917.24667196825,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)","q2":967.48827978075,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: 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-  window.options = [{"option":"ci","value":"480.0"},{"option":"ciMarket","value":null},{"option":"customCpuTdpFile","value":null},{"option":"ignoreCpuModel","value":"false"},{"option":"location","value":null},{"option":"machineType","value":null},{"option":"powerdrawCpuDefault","value":null},{"option":"powerdrawMem","value":"0.3725"},{"option":"pue","value":"1.0"},{"option":"reportFile","value":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html"},{"option":"summaryFile","value":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt"},{"option":"traceFile","value":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt"}];
-
-  </script>
-
-</body>
-</html>
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
deleted file mode 100644
index 8fda4c5c..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
+++ /dev/null
@@ -1,29 +0,0 @@
-Total CO2e footprint measures of this workflow run (including cached tasks):
-  CO2e emissions: 1.06 g
-  Energy consumption: 2.21 Wh
-  CO2e emissions (market): -
-
-Which equals:
-  - 0.006 km travelled by car
-  - It takes one tree 50min 46.78s to sequester the equivalent amount of CO2 from the atmosphere
-  - 0.002 % of a flight from Paris to London
-
-The calculation of these values is based on the carbon footprint computation method developed in the Green Algorithms project:
-  Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
-  Adv. Sci. 2021, 2100707. https://doi.org/10.1002/advs.202100707
-
-nf-co2footprint plugin version: 1.0.0
-
-nf-co2footprint options:
-  ci: 480.0
-  ciMarket: null
-  ignoreCpuModel: false
-  location: null
-  machineType: null
-  powerdrawCpuDefault: null
-  powerdrawMem: 0.3725
-  pue: 1.0
-  customCpuTdpFile: null
-  reportFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_report_2025-10-17_15-37-58.html
-  summaryFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_summary_2025-10-17_15-37-58.txt
-  traceFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
deleted file mode 100644
index 7874bd8d..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/co2footprint_trace_2025-10-17_15-37-58.txt
+++ /dev/null
@@ -1,100 +0,0 @@
-task_id	status	name	energy_consumption	CO2e	CO2e_market	carbon_intensity	%cpu	memory	realtime	cpus	powerdraw_cpu	cpu_model
-13	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref args: -gt_upgma_-medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	41.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-6	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	35.4%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-1	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR (seatoxin-ref.tar.gz)	249.32 uWh	119.67 ug	null	480.0 gCO₂e/kWh	38.6%	3.0 GB	211ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-8	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (seatoxin-ref)	1.5 mWh	718.83 ug	null	480.0 gCO₂e/kWh	52.6%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-11	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE (toxin-ref)	1.41 mWh	674.42 ug	null	480.0 gCO₂e/kWh	48.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-2	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	5.66 mWh	2.72 mg	null	480.0 gCO₂e/kWh	69.8%	3.0 GB	3s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-3	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	1.67 mWh	802.25 ug	null	480.0 gCO₂e/kWh	60.3%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-10	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	1.08 mWh	516.25 ug	null	480.0 gCO₂e/kWh	33.9%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-14	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	53.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-4	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	1.1 mWh	530.33 ug	null	480.0 gCO₂e/kWh	35.2%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-9	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	5.09 mWh	2.44 mg	null	480.0 gCO₂e/kWh	99.0%	3.0 GB	2s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-12	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	48.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-5	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE (seatoxin-ref args: -gt_upgma_-medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	45.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-7	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	59.0%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-15	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	1.93 mWh	926.83 ug	null	480.0 gCO₂e/kWh	71.8%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-17	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	126.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-20	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	1.21 mWh	581.25 ug	null	480.0 gCO₂e/kWh	39.9%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-22	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	1.42 mWh	679.83 ug	null	480.0 gCO₂e/kWh	49.0%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-18	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.4%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-21	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	50.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-23	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (toxin-ref)	112.23 uWh	53.87 ug	null	480.0 gCO₂e/kWh	50.0%	3.0 GB	78ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-19	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	53.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-25	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM (seatoxin-ref)	141.76 uWh	68.04 ug	null	480.0 gCO₂e/kWh	28.4%	3.0 GB	149ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-26	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS (summary_seqstats)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	47.6%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-16	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: FAMSA)	15.36 mWh	7.38 mg	null	480.0 gCO₂e/kWh	83.5%	3.0 GB	7s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-28	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: FAMSA argstree: -gt upgma -medoidtree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	53.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-31	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	47.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-27	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: CLUSTALO  args: default)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	46.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-29	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: CLUSTALO  args: default)	1.3 mWh	624.58 ug	null	480.0 gCO₂e/kWh	43.9%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-24	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: FAMSA)	14.31 mWh	6.87 mg	null	480.0 gCO₂e/kWh	91.9%	3.0 GB	6s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-30	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	36.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-48	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT  args: --dpparttree)	1.19 mWh	571.5 ug	null	480.0 gCO₂e/kWh	39.0%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-53	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	9.6 mWh	4.61 mg	null	480.0 gCO₂e/kWh	67.6%	3.0 GB	5s 226ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-52	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	1.88 mWh	900.78 ug	null	480.0 gCO₂e/kWh	23.3%	3.0 GB	2s 244ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-49	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	75.7%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-41	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	28.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-50	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: default)	33.36 mWh	16.01 mg	null	480.0 gCO₂e/kWh	171.0%	3.0 GB	8s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-36	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	40.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-33	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT)	1.16 mWh	556.33 ug	null	480.0 gCO₂e/kWh	37.6%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-47	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (toxin-ref tree: DEFAULT)	1.16 mWh	555.25 ug	null	480.0 gCO₂e/kWh	37.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-42	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-37	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN (seatoxin-ref tree: DEFAULT  args: --dpparttree)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	38.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-44	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN (toxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	64.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-32	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN (seatoxin-ref tree: DEFAULT)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	26.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-51	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (toxin-ref tree: DEFAULT  args: -reg_nseq_3)	36.41 mWh	17.48 mg	null	480.0 gCO₂e/kWh	187.9%	3.0 GB	8s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-39	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: -reg_nseq_3)	2.73 mWh	1.31 mg	null	480.0 gCO₂e/kWh	107.1%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-35	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	2.52 mWh	1.21 mg	null	480.0 gCO₂e/kWh	98.0%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-43	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (toxin-ref tree: DEFAULT)	20.57 mWh	9.88 mg	null	480.0 gCO₂e/kWh	100.2%	3.0 GB	8s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-46	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (toxin-ref tree: DEFAULT  args: default)	13.3 mWh	6.38 mg	null	480.0 gCO₂e/kWh	90.0%	3.0 GB	5s 680ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-34	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN (seatoxin-ref tree: DEFAULT)	13.37 mWh	6.42 mg	null	480.0 gCO₂e/kWh	85.0%	3.0 GB	6s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-54	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	191.17 uWh	91.76 ug	null	480.0 gCO₂e/kWh	34.1%	3.0 GB	177ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-55	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	1.2 mWh	574.75 ug	null	480.0 gCO₂e/kWh	39.3%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-45	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN (seatoxin-ref tree: DEFAULT  args: default)	11.23 mWh	5.39 mg	null	480.0 gCO₂e/kWh	65.5%	3.0 GB	6s 276ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-58	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	57.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-56	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	8.55 mWh	4.11 mg	null	480.0 gCO₂e/kWh	81.0%	3.0 GB	4s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-57	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	1.36 mWh	652.75 ug	null	480.0 gCO₂e/kWh	46.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-60	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT (seatoxin-ref)	179.99 uWh	86.39 ug	null	480.0 gCO₂e/kWh	34.0%	3.0 GB	167ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-59	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB (seatoxin-ref)	494.88 uWh	237.54 ug	null	480.0 gCO₂e/kWh	30.1%	3.0 GB	500ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-61	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE (seatoxin-ref)	82.41 uWh	39.56 ug	null	480.0 gCO₂e/kWh	49.2%	3.0 GB	58ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-62	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS (summary_simstats)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	43.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-63	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	113.54 uWh	54.5 ug	null	480.0 gCO₂e/kWh	39.2%	3.0 GB	95ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-65	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	37.6%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-64	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	1.4 mWh	673.33 ug	null	480.0 gCO₂e/kWh	48.4%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-67	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-66	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	42.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-68	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	33.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-71	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	132.98 uWh	63.83 ug	null	480.0 gCO₂e/kWh	40.3%	3.0 GB	109ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-69	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	49.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-70	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	37.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-73	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	33.8%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-72	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	44.4%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-74	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	51.3%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-75	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	106.73 uWh	51.23 ug	null	480.0 gCO₂e/kWh	34.5%	3.0 GB	98ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-77	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	42.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-76	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	41.7%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-79	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	43.6%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-80	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	97.35 uWh	46.73 ug	null	480.0 gCO₂e/kWh	43.0%	3.0 GB	76ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-78	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	6.56 mWh	3.15 mg	null	480.0 gCO₂e/kWh	83.1%	3.0 GB	3s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-81	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	57.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-82	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	52.2%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-165	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	30.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-84	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	40.0%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-86	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	40.5%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-83	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	91.64 uWh	43.99 ug	null	480.0 gCO₂e/kWh	37.0%	3.0 GB	80ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-87	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	1.13 mWh	541.17 ug	null	480.0 gCO₂e/kWh	36.2%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-85	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	1.18 mWh	566.08 ug	null	480.0 gCO₂e/kWh	38.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-88	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	134.26 uWh	64.44 ug	null	480.0 gCO₂e/kWh	42.9%	3.0 GB	105ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-91	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	50.0%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-89	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (toxin-ref)	6.38 mWh	3.06 mg	null	480.0 gCO₂e/kWh	80.5%	3.0 GB	3s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-90	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (toxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	43.9%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-92	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (toxin-ref)	1.52 mWh	728.58 ug	null	480.0 gCO₂e/kWh	53.5%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-93	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS (seatoxin-ref)	1.21 mWh	580.17 ug	null	480.0 gCO₂e/kWh	39.8%	3.0 GB	1s	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-96	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS (seatoxin-ref)	0.0 pWh	0.0 pg	null	480.0 gCO₂e/kWh	47.1%	3.0 GB	0ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-94	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (seatoxin-ref)	121.99 uWh	58.55 ug	null	480.0 gCO₂e/kWh	41.4%	3.0 GB	98ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-95	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP (seatoxin-ref)	21.02 mWh	10.09 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	3s 151ms	2	11.5 W	null
-97	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC (seatoxin-ref)	22.07 mWh	10.59 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	3s 308ms	2	11.5 W	null
-98	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS (toxin-ref)	113.54 uWh	54.5 ug	null	480.0 gCO₂e/kWh	57.1%	3.0 GB	71ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-38	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (seatoxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	867.01 mWh	416.16 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	129s 956ms	2	11.5 W	null
-40	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN (toxin-ref tree: DEFAULT  args: --use_language_model_--sequence_weights)	1.07 Wh	512.63 mg	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	160s 79ms	2	11.5 W	null
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
deleted file mode 100644
index 1be0c4ea..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
+++ /dev/null
@@ -1,67 +0,0 @@
-CALCULATE_SEQSTATS:
-  python: 3.11.0
-CALC_GAPS:
-  awk: 1.3.4 20200120
-CLUSTALO_ALIGN:
-  clustalo: 1.2.4
-  pigz: 2.8)
-CLUSTALO_GUIDETREE:
-  clustalo: 1.2.4
-CONCAT_SEQSTATS:
-  csvtk: 0.31.0
-CONCAT_SIMSTATS:
-  csvtk: 0.31.0
-EXTRACT_PLDDT:
-  awk: 1.3.4 20200120
-FAMSA_ALIGN:
-  famsa: 2.4.1-45c9b2b (2025-05-09)
-FAMSA_GUIDETREE:
-  famsa: 2.2.2- (2022-10-09)
-FASTAVALIDATOR:
-  py_fasta_validator: 0.6
-KALIGN_ALIGN:
-  kalign: 3.4.0
-  pigz: 2.8)
-MAFFT_ALIGN:
-  mafft: 7.52
-  pigz: 2.8)
-MAFFT_GUIDETREE:
-  mafft: 7.525
-MAGUS_ALIGN:
-  MAGUS: 0.2.0
-  pigz: 2.8)
-MUSCLE5_ALIGN:
-  muscle: 5.1
-  pigz: 2.8)
-PARSE_SIM:
-  awk: 1.3.4 20200120
-  cat: 8.32
-PIGZ_COMPRESS:
-  pigz: 2.8
-REGRESSIVE_ALIGN:
-  tcoffee: 13.46.0.919e8c6b
-  pigz: 2.8)
-TCOFFEE_ALIGN:
-  tcoffee: 13.46.0.919e8c6b
-  pigz: 2.8)
-TCOFFEE_ALNCOMPARE_SP:
-  tcoffee: 13.46.0.919e8c6b
-  pigz: 2.8)
-TCOFFEE_ALNCOMPARE_TC:
-  tcoffee: 13.46.0.919e8c6b
-  pigz: 2.8)
-TCOFFEE_EXTRACTFROMPDB:
-  tcoffee: 13.46.0.919e8c6b
-TCOFFEE_SEQREFORMAT_SIM:
-  tcoffee: 13.46.0.919e8c6b
-TCOFFEE_TCS:
-  tcoffee: 13.46.0.919e8c6b
-  pigz: 2.8)
-UNTAR:
-  untar: 1.34
-UPP_ALIGN:
-  upp: 4.5.5
-  pigz: 2.4)
-Workflow:
-    nf-core/multiplesequencealign: v1.2.0dev
-    Nextflow: 25.04.6
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json
deleted file mode 100644
index e4426a35..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/pipeline_info/params_2025-10-17_15-38-07.json
+++ /dev/null
@@ -1,57 +0,0 @@
-{
-    "input": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.1/samplesheet_test_af2.csv",
-    "seqs": null,
-    "tools": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.1/toolsheet_full.csv",
-    "templates_suffix": ".pdb",
-    "pdbs_dir": null,
-    "tree": null,
-    "args_tree": null,
-    "aligner": null,
-    "args_aligner": null,
-    "skip_validation": false,
-    "skip_preprocessing": false,
-    "skip_pdbconversion": false,
-    "build_consensus": true,
-    "skip_stats": false,
-    "calc_sim": true,
-    "calc_seq_stats": true,
-    "extract_plddt": true,
-    "skip_eval": false,
-    "calc_sp": true,
-    "calc_tc": true,
-    "calc_irmsd": true,
-    "calc_gaps": true,
-    "calc_tcs": true,
-    "skip_compression": false,
-    "multiqc_config": null,
-    "multiqc_title": null,
-    "multiqc_logo": null,
-    "max_multiqc_email_size": "25.MB",
-    "multiqc_methods_description": null,
-    "skip_multiqc": false,
-    "outdir": "/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output",
-    "publish_dir_mode": "copy",
-    "email": null,
-    "email_on_fail": null,
-    "plaintext_email": false,
-    "monochrome_logs": false,
-    "hook_url": null,
-    "help": false,
-    "help_full": false,
-    "show_hidden": false,
-    "version": false,
-    "pipelines_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign",
-    "trace_report_suffix": "2025-10-17_15-37-58",
-    "config_profile_name": "Test profile",
-    "config_profile_description": "Minimal test dataset to check pipeline function",
-    "shiny_app": "/home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app",
-    "skip_shiny": false,
-    "skip_visualisation": false,
-    "custom_config_version": "master",
-    "custom_config_base": "https://raw.githubusercontent.com/nf-core/configs/master",
-    "config_profile_contact": null,
-    "config_profile_url": null,
-    "validate_params": true,
-    "use_gpu": false,
-    "modules_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/"
-}
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt
deleted file mode 100644
index e12b94a0..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/perc_sim/toxin-ref.txt
+++ /dev/null
@@ -1,426 +0,0 @@
-# TC_SIMILARITY_MATRIX_FORMAT_01
-# SEQ_INDEX 1kbt 0
-# SEQ_INDEX 2crt 1
-# SEQ_INDEX 2cdx 2
-# SEQ_INDEX 1cdta 3
-# SEQ_INDEX 1tgxa 4
-# SEQ_INDEX 1kxia 5
-# SEQ_INDEX 1tfs 6
-# SEQ_INDEX 1drs 7
-# SEQ_INDEX 1txb 8
-# SEQ_INDEX 2ctx 9
-# SEQ_INDEX 1ntn 10
-# SEQ_INDEX 1lsi 11
-# SEQ_INDEX 2abxa 12
-# SEQ_INDEX 2nbta 13
-# SEQ_INDEX 1nean 14
-# SEQ_INDEX 1nor 15
-# SEQ_INDEX 1cod 16
-# SEQ_INDEX 1nxb 17
-# SEQ_INDEX 1ntx 18
-# SEQ_INDEX 1fas 19
-# PW_SEQ_DISTANCES 
-BOT	    0    1	 88.00  1kbt	  2crt	 88.00
-TOP	    1    0	 88.00  2crt	  1kbt	 88.00
-BOT	    0    2	 85.00  1kbt	  2cdx	 85.00
-TOP	    2    0	 85.00  2cdx	  1kbt	 85.00
-BOT	    0    3	 78.00  1kbt	 1cdta	 78.00
-TOP	    3    0	 78.00 1cdta	  1kbt	 78.00
-BOT	    0    4	 71.00  1kbt	 1tgxa	 71.00
-TOP	    4    0	 71.00 1tgxa	  1kbt	 71.00
-BOT	    0    5	 65.00  1kbt	 1kxia	 65.00
-TOP	    5    0	 65.00 1kxia	  1kbt	 65.00
-BOT	    0    6	 41.00  1kbt	  1tfs	 41.00
-TOP	    6    0	 41.00  1tfs	  1kbt	 41.00
-BOT	    0    7	 38.00  1kbt	  1drs	 38.00
-TOP	    7    0	 38.00  1drs	  1kbt	 38.00
-BOT	    0    8	 35.00  1kbt	  1txb	 35.00
-TOP	    8    0	 35.00  1txb	  1kbt	 35.00
-BOT	    0    9	 36.00  1kbt	  2ctx	 36.00
-TOP	    9    0	 36.00  2ctx	  1kbt	 36.00
-BOT	    0   10	 32.00  1kbt	  1ntn	 32.00
-TOP	   10    0	 32.00  1ntn	  1kbt	 32.00
-BOT	    0   11	 33.00  1kbt	  1lsi	 33.00
-TOP	   11    0	 33.00  1lsi	  1kbt	 33.00
-BOT	    0   12	 38.00  1kbt	 2abxa	 38.00
-TOP	   12    0	 38.00 2abxa	  1kbt	 38.00
-BOT	    0   13	 33.00  1kbt	 2nbta	 33.00
-TOP	   13    0	 33.00 2nbta	  1kbt	 33.00
-BOT	    0   14	 38.00  1kbt	 1nean	 38.00
-TOP	   14    0	 38.00 1nean	  1kbt	 38.00
-BOT	    0   15	 40.00  1kbt	  1nor	 40.00
-TOP	   15    0	 40.00  1nor	  1kbt	 40.00
-BOT	    0   16	 32.00  1kbt	  1cod	 32.00
-TOP	   16    0	 32.00  1cod	  1kbt	 32.00
-BOT	    0   17	 32.00  1kbt	  1nxb	 32.00
-TOP	   17    0	 32.00  1nxb	  1kbt	 32.00
-BOT	    0   18	 34.00  1kbt	  1ntx	 34.00
-TOP	   18    0	 34.00  1ntx	  1kbt	 34.00
-BOT	    0   19	 28.00  1kbt	  1fas	 28.00
-TOP	   19    0	 28.00  1fas	  1kbt	 28.00
-BOT	    1    2	 81.00  2crt	  2cdx	 81.00
-TOP	    2    1	 81.00  2cdx	  2crt	 81.00
-BOT	    1    3	 75.00  2crt	 1cdta	 75.00
-TOP	    3    1	 75.00 1cdta	  2crt	 75.00
-BOT	    1    4	 80.00  2crt	 1tgxa	 80.00
-TOP	    4    1	 80.00 1tgxa	  2crt	 80.00
-BOT	    1    5	 65.00  2crt	 1kxia	 65.00
-TOP	    5    1	 65.00 1kxia	  2crt	 65.00
-BOT	    1    6	 38.00  2crt	  1tfs	 38.00
-TOP	    6    1	 38.00  1tfs	  2crt	 38.00
-BOT	    1    7	 34.00  2crt	  1drs	 34.00
-TOP	    7    1	 34.00  1drs	  2crt	 34.00
-BOT	    1    8	 37.00  2crt	  1txb	 37.00
-TOP	    8    1	 37.00  1txb	  2crt	 37.00
-BOT	    1    9	 35.00  2crt	  2ctx	 35.00
-TOP	    9    1	 35.00  2ctx	  2crt	 35.00
-BOT	    1   10	 35.00  2crt	  1ntn	 35.00
-TOP	   10    1	 35.00  1ntn	  2crt	 35.00
-BOT	    1   11	 34.00  2crt	  1lsi	 34.00
-TOP	   11    1	 34.00  1lsi	  2crt	 34.00
-BOT	    1   12	 40.00  2crt	 2abxa	 40.00
-TOP	   12    1	 40.00 2abxa	  2crt	 40.00
-BOT	    1   13	 32.00  2crt	 2nbta	 32.00
-TOP	   13    1	 32.00 2nbta	  2crt	 32.00
-BOT	    1   14	 40.00  2crt	 1nean	 40.00
-TOP	   14    1	 40.00 1nean	  2crt	 40.00
-BOT	    1   15	 42.00  2crt	  1nor	 42.00
-TOP	   15    1	 42.00  1nor	  2crt	 42.00
-BOT	    1   16	 34.00  2crt	  1cod	 34.00
-TOP	   16    1	 34.00  1cod	  2crt	 34.00
-BOT	    1   17	 29.00  2crt	  1nxb	 29.00
-TOP	   17    1	 29.00  1nxb	  2crt	 29.00
-BOT	    1   18	 31.00  2crt	  1ntx	 31.00
-TOP	   18    1	 31.00  1ntx	  2crt	 31.00
-BOT	    1   19	 32.00  2crt	  1fas	 32.00
-TOP	   19    1	 32.00  1fas	  2crt	 32.00
-BOT	    2    3	 80.00  2cdx	 1cdta	 80.00
-TOP	    3    2	 80.00 1cdta	  2cdx	 80.00
-BOT	    2    4	 73.00  2cdx	 1tgxa	 73.00
-TOP	    4    2	 73.00 1tgxa	  2cdx	 73.00
-BOT	    2    5	 63.00  2cdx	 1kxia	 63.00
-TOP	    5    2	 63.00 1kxia	  2cdx	 63.00
-BOT	    2    6	 40.00  2cdx	  1tfs	 40.00
-TOP	    6    2	 40.00  1tfs	  2cdx	 40.00
-BOT	    2    7	 36.00  2cdx	  1drs	 36.00
-TOP	    7    2	 36.00  1drs	  2cdx	 36.00
-BOT	    2    8	 40.00  2cdx	  1txb	 40.00
-TOP	    8    2	 40.00  1txb	  2cdx	 40.00
-BOT	    2    9	 38.00  2cdx	  2ctx	 38.00
-TOP	    9    2	 38.00  2ctx	  2cdx	 38.00
-BOT	    2   10	 35.00  2cdx	  1ntn	 35.00
-TOP	   10    2	 35.00  1ntn	  2cdx	 35.00
-BOT	    2   11	 32.00  2cdx	  1lsi	 32.00
-TOP	   11    2	 32.00  1lsi	  2cdx	 32.00
-BOT	    2   12	 41.00  2cdx	 2abxa	 41.00
-TOP	   12    2	 41.00 2abxa	  2cdx	 41.00
-BOT	    2   13	 31.00  2cdx	 2nbta	 31.00
-TOP	   13    2	 31.00 2nbta	  2cdx	 31.00
-BOT	    2   14	 40.00  2cdx	 1nean	 40.00
-TOP	   14    2	 40.00 1nean	  2cdx	 40.00
-BOT	    2   15	 42.00  2cdx	  1nor	 42.00
-TOP	   15    2	 42.00  1nor	  2cdx	 42.00
-BOT	    2   16	 34.00  2cdx	  1cod	 34.00
-TOP	   16    2	 34.00  1cod	  2cdx	 34.00
-BOT	    2   17	 29.00  2cdx	  1nxb	 29.00
-TOP	   17    2	 29.00  1nxb	  2cdx	 29.00
-BOT	    2   18	 31.00  2cdx	  1ntx	 31.00
-TOP	   18    2	 31.00  1ntx	  2cdx	 31.00
-BOT	    2   19	 25.00  2cdx	  1fas	 25.00
-TOP	   19    2	 25.00  1fas	  2cdx	 25.00
-BOT	    3    4	 70.00 1cdta	 1tgxa	 70.00
-TOP	    4    3	 70.00 1tgxa	 1cdta	 70.00
-BOT	    3    5	 68.00 1cdta	 1kxia	 68.00
-TOP	    5    3	 68.00 1kxia	 1cdta	 68.00
-BOT	    3    6	 40.00 1cdta	  1tfs	 40.00
-TOP	    6    3	 40.00  1tfs	 1cdta	 40.00
-BOT	    3    7	 34.00 1cdta	  1drs	 34.00
-TOP	    7    3	 34.00  1drs	 1cdta	 34.00
-BOT	    3    8	 36.00 1cdta	  1txb	 36.00
-TOP	    8    3	 36.00  1txb	 1cdta	 36.00
-BOT	    3    9	 35.00 1cdta	  2ctx	 35.00
-TOP	    9    3	 35.00  2ctx	 1cdta	 35.00
-BOT	    3   10	 38.00 1cdta	  1ntn	 38.00
-TOP	   10    3	 38.00  1ntn	 1cdta	 38.00
-BOT	    3   11	 33.00 1cdta	  1lsi	 33.00
-TOP	   11    3	 33.00  1lsi	 1cdta	 33.00
-BOT	    3   12	 41.00 1cdta	 2abxa	 41.00
-TOP	   12    3	 41.00 2abxa	 1cdta	 41.00
-BOT	    3   13	 30.00 1cdta	 2nbta	 30.00
-TOP	   13    3	 30.00 2nbta	 1cdta	 30.00
-BOT	    3   14	 40.00 1cdta	 1nean	 40.00
-TOP	   14    3	 40.00 1nean	 1cdta	 40.00
-BOT	    3   15	 42.00 1cdta	  1nor	 42.00
-TOP	   15    3	 42.00  1nor	 1cdta	 42.00
-BOT	    3   16	 34.00 1cdta	  1cod	 34.00
-TOP	   16    3	 34.00  1cod	 1cdta	 34.00
-BOT	    3   17	 29.00 1cdta	  1nxb	 29.00
-TOP	   17    3	 29.00  1nxb	 1cdta	 29.00
-BOT	    3   18	 34.00 1cdta	  1ntx	 34.00
-TOP	   18    3	 34.00  1ntx	 1cdta	 34.00
-BOT	    3   19	 27.00 1cdta	  1fas	 27.00
-TOP	   19    3	 27.00  1fas	 1cdta	 27.00
-BOT	    4    5	 63.00 1tgxa	 1kxia	 63.00
-TOP	    5    4	 63.00 1kxia	 1tgxa	 63.00
-BOT	    4    6	 36.00 1tgxa	  1tfs	 36.00
-TOP	    6    4	 36.00  1tfs	 1tgxa	 36.00
-BOT	    4    7	 36.00 1tgxa	  1drs	 36.00
-TOP	    7    4	 36.00  1drs	 1tgxa	 36.00
-BOT	    4    8	 33.00 1tgxa	  1txb	 33.00
-TOP	    8    4	 33.00  1txb	 1tgxa	 33.00
-BOT	    4    9	 32.00 1tgxa	  2ctx	 32.00
-TOP	    9    4	 32.00  2ctx	 1tgxa	 32.00
-BOT	    4   10	 33.00 1tgxa	  1ntn	 33.00
-TOP	   10    4	 33.00  1ntn	 1tgxa	 33.00
-BOT	    4   11	 33.00 1tgxa	  1lsi	 33.00
-TOP	   11    4	 33.00  1lsi	 1tgxa	 33.00
-BOT	    4   12	 38.00 1tgxa	 2abxa	 38.00
-TOP	   12    4	 38.00 2abxa	 1tgxa	 38.00
-BOT	    4   13	 39.00 1tgxa	 2nbta	 39.00
-TOP	   13    4	 39.00 2nbta	 1tgxa	 39.00
-BOT	    4   14	 50.00 1tgxa	 1nean	 50.00
-TOP	   14    4	 50.00 1nean	 1tgxa	 50.00
-BOT	    4   15	 43.00 1tgxa	  1nor	 43.00
-TOP	   15    4	 43.00  1nor	 1tgxa	 43.00
-BOT	    4   16	 39.00 1tgxa	  1cod	 39.00
-TOP	   16    4	 39.00  1cod	 1tgxa	 39.00
-BOT	    4   17	 34.00 1tgxa	  1nxb	 34.00
-TOP	   17    4	 34.00  1nxb	 1tgxa	 34.00
-BOT	    4   18	 34.00 1tgxa	  1ntx	 34.00
-TOP	   18    4	 34.00  1ntx	 1tgxa	 34.00
-BOT	    4   19	 33.00 1tgxa	  1fas	 33.00
-TOP	   19    4	 33.00  1fas	 1tgxa	 33.00
-BOT	    5    6	 35.00 1kxia	  1tfs	 35.00
-TOP	    6    5	 35.00  1tfs	 1kxia	 35.00
-BOT	    5    7	 35.00 1kxia	  1drs	 35.00
-TOP	    7    5	 35.00  1drs	 1kxia	 35.00
-BOT	    5    8	 39.00 1kxia	  1txb	 39.00
-TOP	    8    5	 39.00  1txb	 1kxia	 39.00
-BOT	    5    9	 36.00 1kxia	  2ctx	 36.00
-TOP	    9    5	 36.00  2ctx	 1kxia	 36.00
-BOT	    5   10	 34.00 1kxia	  1ntn	 34.00
-TOP	   10    5	 34.00  1ntn	 1kxia	 34.00
-BOT	    5   11	 37.00 1kxia	  1lsi	 37.00
-TOP	   11    5	 37.00  1lsi	 1kxia	 37.00
-BOT	    5   12	 45.00 1kxia	 2abxa	 45.00
-TOP	   12    5	 45.00 2abxa	 1kxia	 45.00
-BOT	    5   13	 42.00 1kxia	 2nbta	 42.00
-TOP	   13    5	 42.00 2nbta	 1kxia	 42.00
-BOT	    5   14	 44.00 1kxia	 1nean	 44.00
-TOP	   14    5	 44.00 1nean	 1kxia	 44.00
-BOT	    5   15	 41.00 1kxia	  1nor	 41.00
-TOP	   15    5	 41.00  1nor	 1kxia	 41.00
-BOT	    5   16	 35.00 1kxia	  1cod	 35.00
-TOP	   16    5	 35.00  1cod	 1kxia	 35.00
-BOT	    5   17	 33.00 1kxia	  1nxb	 33.00
-TOP	   17    5	 33.00  1nxb	 1kxia	 33.00
-BOT	    5   18	 38.00 1kxia	  1ntx	 38.00
-TOP	   18    5	 38.00  1ntx	 1kxia	 38.00
-BOT	    5   19	 40.00 1kxia	  1fas	 40.00
-TOP	   19    5	 40.00  1fas	 1kxia	 40.00
-BOT	    6    7	 52.00  1tfs	  1drs	 52.00
-TOP	    7    6	 52.00  1drs	  1tfs	 52.00
-BOT	    6    8	 27.00  1tfs	  1txb	 27.00
-TOP	    8    6	 27.00  1txb	  1tfs	 27.00
-BOT	    6    9	 36.00  1tfs	  2ctx	 36.00
-TOP	    9    6	 36.00  2ctx	  1tfs	 36.00
-BOT	    6   10	 35.00  1tfs	  1ntn	 35.00
-TOP	   10    6	 35.00  1ntn	  1tfs	 35.00
-BOT	    6   11	 37.00  1tfs	  1lsi	 37.00
-TOP	   11    6	 37.00  1lsi	  1tfs	 37.00
-BOT	    6   12	 42.00  1tfs	 2abxa	 42.00
-TOP	   12    6	 42.00 2abxa	  1tfs	 42.00
-BOT	    6   13	 37.00  1tfs	 2nbta	 37.00
-TOP	   13    6	 37.00 2nbta	  1tfs	 37.00
-BOT	    6   14	 48.00  1tfs	 1nean	 48.00
-TOP	   14    6	 48.00 1nean	  1tfs	 48.00
-BOT	    6   15	 46.00  1tfs	  1nor	 46.00
-TOP	   15    6	 46.00  1nor	  1tfs	 46.00
-BOT	    6   16	 43.00  1tfs	  1cod	 43.00
-TOP	   16    6	 43.00  1cod	  1tfs	 43.00
-BOT	    6   17	 43.00  1tfs	  1nxb	 43.00
-TOP	   17    6	 43.00  1nxb	  1tfs	 43.00
-BOT	    6   18	 48.00  1tfs	  1ntx	 48.00
-TOP	   18    6	 48.00  1ntx	  1tfs	 48.00
-BOT	    6   19	 35.00  1tfs	  1fas	 35.00
-TOP	   19    6	 35.00  1fas	  1tfs	 35.00
-BOT	    7    8	 38.00  1drs	  1txb	 38.00
-TOP	    8    7	 38.00  1txb	  1drs	 38.00
-BOT	    7    9	 32.00  1drs	  2ctx	 32.00
-TOP	    9    7	 32.00  2ctx	  1drs	 32.00
-BOT	    7   10	 35.00  1drs	  1ntn	 35.00
-TOP	   10    7	 35.00  1ntn	  1drs	 35.00
-BOT	    7   11	 34.00  1drs	  1lsi	 34.00
-TOP	   11    7	 34.00  1lsi	  1drs	 34.00
-BOT	    7   12	 37.00  1drs	 2abxa	 37.00
-TOP	   12    7	 37.00 2abxa	  1drs	 37.00
-BOT	    7   13	 29.00  1drs	 2nbta	 29.00
-TOP	   13    7	 29.00 2nbta	  1drs	 29.00
-BOT	    7   14	 54.00  1drs	 1nean	 54.00
-TOP	   14    7	 54.00 1nean	  1drs	 54.00
-BOT	    7   15	 52.00  1drs	  1nor	 52.00
-TOP	   15    7	 52.00  1nor	  1drs	 52.00
-BOT	    7   16	 40.00  1drs	  1cod	 40.00
-TOP	   16    7	 40.00  1cod	  1drs	 40.00
-BOT	    7   17	 54.00  1drs	  1nxb	 54.00
-TOP	   17    7	 54.00  1nxb	  1drs	 54.00
-BOT	    7   18	 53.00  1drs	  1ntx	 53.00
-TOP	   18    7	 53.00  1ntx	  1drs	 53.00
-BOT	    7   19	 39.00  1drs	  1fas	 39.00
-TOP	   19    7	 39.00  1fas	  1drs	 39.00
-BOT	    8    9	 73.00  1txb	  2ctx	 73.00
-TOP	    9    8	 73.00  2ctx	  1txb	 73.00
-BOT	    8   10	 66.00  1txb	  1ntn	 66.00
-TOP	   10    8	 66.00  1ntn	  1txb	 66.00
-BOT	    8   11	 60.00  1txb	  1lsi	 60.00
-TOP	   11    8	 60.00  1lsi	  1txb	 60.00
-BOT	    8   12	 56.00  1txb	 2abxa	 56.00
-TOP	   12    8	 56.00 2abxa	  1txb	 56.00
-BOT	    8   13	 53.00  1txb	 2nbta	 53.00
-TOP	   13    8	 53.00 2nbta	  1txb	 53.00
-BOT	    8   14	 48.00  1txb	 1nean	 48.00
-TOP	   14    8	 48.00 1nean	  1txb	 48.00
-BOT	    8   15	 50.00  1txb	  1nor	 50.00
-TOP	   15    8	 50.00  1nor	  1txb	 50.00
-BOT	    8   16	 49.00  1txb	  1cod	 49.00
-TOP	   16    8	 49.00  1cod	  1txb	 49.00
-BOT	    8   17	 42.00  1txb	  1nxb	 42.00
-TOP	   17    8	 42.00  1nxb	  1txb	 42.00
-BOT	    8   18	 53.00  1txb	  1ntx	 53.00
-TOP	   18    8	 53.00  1ntx	  1txb	 53.00
-BOT	    8   19	 37.00  1txb	  1fas	 37.00
-TOP	   19    8	 37.00  1fas	  1txb	 37.00
-BOT	    9   10	 60.00  2ctx	  1ntn	 60.00
-TOP	   10    9	 60.00  1ntn	  2ctx	 60.00
-BOT	    9   11	 53.00  2ctx	  1lsi	 53.00
-TOP	   11    9	 53.00  1lsi	  2ctx	 53.00
-BOT	    9   12	 52.00  2ctx	 2abxa	 52.00
-TOP	   12    9	 52.00 2abxa	  2ctx	 52.00
-BOT	    9   13	 49.00  2ctx	 2nbta	 49.00
-TOP	   13    9	 49.00 2nbta	  2ctx	 49.00
-BOT	    9   14	 44.00  2ctx	 1nean	 44.00
-TOP	   14    9	 44.00 1nean	  2ctx	 44.00
-BOT	    9   15	 43.00  2ctx	  1nor	 43.00
-TOP	   15    9	 43.00  1nor	  2ctx	 43.00
-BOT	    9   16	 44.00  2ctx	  1cod	 44.00
-TOP	   16    9	 44.00  1cod	  2ctx	 44.00
-BOT	    9   17	 44.00  2ctx	  1nxb	 44.00
-TOP	   17    9	 44.00  1nxb	  2ctx	 44.00
-BOT	    9   18	 48.00  2ctx	  1ntx	 48.00
-TOP	   18    9	 48.00  1ntx	  2ctx	 48.00
-BOT	    9   19	 28.00  2ctx	  1fas	 28.00
-TOP	   19    9	 28.00  1fas	  2ctx	 28.00
-BOT	   10   11	 60.00  1ntn	  1lsi	 60.00
-TOP	   11   10	 60.00  1lsi	  1ntn	 60.00
-BOT	   10   12	 61.00  1ntn	 2abxa	 61.00
-TOP	   12   10	 61.00 2abxa	  1ntn	 61.00
-BOT	   10   13	 53.00  1ntn	 2nbta	 53.00
-TOP	   13   10	 53.00 2nbta	  1ntn	 53.00
-BOT	   10   14	 46.00  1ntn	 1nean	 46.00
-TOP	   14   10	 46.00 1nean	  1ntn	 46.00
-BOT	   10   15	 43.00  1ntn	  1nor	 43.00
-TOP	   15   10	 43.00  1nor	  1ntn	 43.00
-BOT	   10   16	 45.00  1ntn	  1cod	 45.00
-TOP	   16   10	 45.00  1cod	  1ntn	 45.00
-BOT	   10   17	 43.00  1ntn	  1nxb	 43.00
-TOP	   17   10	 43.00  1nxb	  1ntn	 43.00
-BOT	   10   18	 47.00  1ntn	  1ntx	 47.00
-TOP	   18   10	 47.00  1ntx	  1ntn	 47.00
-BOT	   10   19	 34.00  1ntn	  1fas	 34.00
-TOP	   19   10	 34.00  1fas	  1ntn	 34.00
-BOT	   11   12	 56.00  1lsi	 2abxa	 56.00
-TOP	   12   11	 56.00 2abxa	  1lsi	 56.00
-BOT	   11   13	 48.00  1lsi	 2nbta	 48.00
-TOP	   13   11	 48.00 2nbta	  1lsi	 48.00
-BOT	   11   14	 47.00  1lsi	 1nean	 47.00
-TOP	   14   11	 47.00 1nean	  1lsi	 47.00
-BOT	   11   15	 47.00  1lsi	  1nor	 47.00
-TOP	   15   11	 47.00  1nor	  1lsi	 47.00
-BOT	   11   16	 49.00  1lsi	  1cod	 49.00
-TOP	   16   11	 49.00  1cod	  1lsi	 49.00
-BOT	   11   17	 41.00  1lsi	  1nxb	 41.00
-TOP	   17   11	 41.00  1nxb	  1lsi	 41.00
-BOT	   11   18	 46.00  1lsi	  1ntx	 46.00
-TOP	   18   11	 46.00  1ntx	  1lsi	 46.00
-BOT	   11   19	 37.00  1lsi	  1fas	 37.00
-TOP	   19   11	 37.00  1fas	  1lsi	 37.00
-BOT	   12   13	 52.00 2abxa	 2nbta	 52.00
-TOP	   13   12	 52.00 2nbta	 2abxa	 52.00
-BOT	   12   14	 48.00 2abxa	 1nean	 48.00
-TOP	   14   12	 48.00 1nean	 2abxa	 48.00
-BOT	   12   15	 45.00 2abxa	  1nor	 45.00
-TOP	   15   12	 45.00  1nor	 2abxa	 45.00
-BOT	   12   16	 44.00 2abxa	  1cod	 44.00
-TOP	   16   12	 44.00  1cod	 2abxa	 44.00
-BOT	   12   17	 40.00 2abxa	  1nxb	 40.00
-TOP	   17   12	 40.00  1nxb	 2abxa	 40.00
-BOT	   12   18	 43.00 2abxa	  1ntx	 43.00
-TOP	   18   12	 43.00  1ntx	 2abxa	 43.00
-BOT	   12   19	 50.00 2abxa	  1fas	 50.00
-TOP	   19   12	 50.00  1fas	 2abxa	 50.00
-BOT	   13   14	 46.00 2nbta	 1nean	 46.00
-TOP	   14   13	 46.00 1nean	 2nbta	 46.00
-BOT	   13   15	 43.00 2nbta	  1nor	 43.00
-TOP	   15   13	 43.00  1nor	 2nbta	 43.00
-BOT	   13   16	 44.00 2nbta	  1cod	 44.00
-TOP	   16   13	 44.00  1cod	 2nbta	 44.00
-BOT	   13   17	 42.00 2nbta	  1nxb	 42.00
-TOP	   17   13	 42.00  1nxb	 2nbta	 42.00
-BOT	   13   18	 35.00 2nbta	  1ntx	 35.00
-TOP	   18   13	 35.00  1ntx	 2nbta	 35.00
-BOT	   13   19	 33.00 2nbta	  1fas	 33.00
-TOP	   19   13	 33.00  1fas	 2nbta	 33.00
-BOT	   14   15	 86.00 1nean	  1nor	 86.00
-TOP	   15   14	 86.00  1nor	 1nean	 86.00
-BOT	   14   16	 78.00 1nean	  1cod	 78.00
-TOP	   16   14	 78.00  1cod	 1nean	 78.00
-BOT	   14   17	 76.00 1nean	  1nxb	 76.00
-TOP	   17   14	 76.00  1nxb	 1nean	 76.00
-BOT	   14   18	 67.00 1nean	  1ntx	 67.00
-TOP	   18   14	 67.00  1ntx	 1nean	 67.00
-BOT	   14   19	 35.00 1nean	  1fas	 35.00
-TOP	   19   14	 35.00  1fas	 1nean	 35.00
-BOT	   15   16	 77.00  1nor	  1cod	 77.00
-TOP	   16   15	 77.00  1cod	  1nor	 77.00
-BOT	   15   17	 72.00  1nor	  1nxb	 72.00
-TOP	   17   15	 72.00  1nxb	  1nor	 72.00
-BOT	   15   18	 67.00  1nor	  1ntx	 67.00
-TOP	   18   15	 67.00  1ntx	  1nor	 67.00
-BOT	   15   19	 30.00  1nor	  1fas	 30.00
-TOP	   19   15	 30.00  1fas	  1nor	 30.00
-BOT	   16   17	 58.00  1cod	  1nxb	 58.00
-TOP	   17   16	 58.00  1nxb	  1cod	 58.00
-BOT	   16   18	 58.00  1cod	  1ntx	 58.00
-TOP	   18   16	 58.00  1ntx	  1cod	 58.00
-BOT	   16   19	 36.00  1cod	  1fas	 36.00
-TOP	   19   16	 36.00  1fas	  1cod	 36.00
-BOT	   17   18	 61.00  1nxb	  1ntx	 61.00
-TOP	   18   17	 61.00  1ntx	  1nxb	 61.00
-BOT	   17   19	 31.00  1nxb	  1fas	 31.00
-TOP	   19   17	 31.00  1fas	  1nxb	 31.00
-BOT	   18   19	 46.00  1ntx	  1fas	 46.00
-TOP	   19   18	 46.00  1fas	  1ntx	 46.00
-AVG	 0	  1kbt	     *	 46.16
-AVG	 1	  2crt	     *	 46.42
-AVG	 2	  2cdx	     *	 46.11
-AVG	 3	 1cdta	     *	 45.47
-AVG	 4	 1tgxa	     *	 45.79
-AVG	 5	 1kxia	     *	 45.16
-AVG	 6	  1tfs	     *	 39.95
-AVG	 7	  1drs	     *	 40.11
-AVG	 8	  1txb	     *	 45.89
-AVG	 9	  2ctx	     *	 43.05
-AVG	 10	  1ntn	     *	 43.95
-AVG	 11	  1lsi	     *	 43.00
-AVG	 12	 2abxa	     *	 45.74
-AVG	 13	 2nbta	     *	 40.58
-AVG	 14	 1nean	     *	 51.32
-AVG	 15	  1nor	     *	 50.05
-AVG	 16	  1cod	     *	 45.95
-AVG	 17	  1nxb	     *	 43.84
-AVG	 18	  1ntx	     *	 46.00
-AVG	 19	  1fas	     *	 34.53
-TOT	   TOT	     *	 44.45
-AVG	   AVG	     *	 44.45
-VAR	   VAR	     *	 185.43
-STD	   STD	     *	 13.62
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
deleted file mode 100644
index 24c4672f..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
+++ /dev/null
@@ -1,21 +0,0 @@
-id,seq_id,sequence length
-toxin-ref,1kbt,60
-toxin-ref,2crt,60
-toxin-ref,2cdx,60
-toxin-ref,1cdta,60
-toxin-ref,1tgxa,60
-toxin-ref,1kxia,62
-toxin-ref,1tfs,60
-toxin-ref,1drs,59
-toxin-ref,1txb,73
-toxin-ref,2ctx,71
-toxin-ref,1ntn,72
-toxin-ref,1lsi,66
-toxin-ref,2abxa,74
-toxin-ref,2nbta,66
-toxin-ref,1nean,61
-toxin-ref,1nor,61
-toxin-ref,1cod,62
-toxin-ref,1nxb,62
-toxin-ref,1ntx,60
-toxin-ref,1fas,61
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
deleted file mode 100644
index 3c9873e2..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
+++ /dev/null
@@ -1,78 +0,0 @@
-(
-(
-1fas:0.347519
-,
-(
-1drs:0.329979
-,
-(
-1tfs:0.282813
-,
-(
-1ntx:0.21875
-,
-(
-1nxb:0.190838
-,
-(
-1cod:0.135246
-,
-(
-1nean:0.0655738
-,
-1nor:0.0655738
-):0.0696721
-):0.0555923
-):0.0279118
-):0.0640625
-):0.0471663
-):0.0175399
-):0.051554
-,
-(
-(
-1kxia:0.225521
-,
-(
-1tgxa:0.138542
-,
-(
-1cdta:0.108333
-,
-(
-2cdx:0.0833333
-,
-(
-1kbt:0.0583333
-,
-2crt:0.0583333
-):0.025
-):0.025
-):0.0302083
-):0.0869792
-):0.146659
-,
-(
-2nbta:0.295455
-,
-(
-2abxa:0.235201
-,
-(
-1lsi:0.234848
-,
-(
-1ntn:0.192488
-,
-(
-1txb:0.15493
-,
-2ctx:0.15493
-):0.0375587
-):0.0423602
-):0.000352517
-):0.0602536
-):0.0767252
-):0.0268929
-)
-;
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd
deleted file mode 100644
index 86f0ede9..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd
+++ /dev/null
@@ -1 +0,0 @@
-((1tfs:1.0,(1fas:1.0,(1drs:1.0,(1ntx:1.0,(1nxb:1.0,(1cod:1.0,(1nean:1.0,1nor:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0,((1kxia:1.0,(1tgxa:1.0,(1cdta:1.0,(2cdx:1.0,(1kbt:1.0,2crt:1.0):1.0):1.0):1.0):1.0):1.0,(2nbta:1.0,(1lsi:1.0,(2abxa:1.0,(1ntn:1.0,(1txb:1.0,2ctx:1.0):1.0):1.0):1.0):1.0):1.0):1.0);
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd
deleted file mode 100644
index ed5b774d..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd
+++ /dev/null
@@ -1 +0,0 @@
-(((((2abxa:1.0,(1ntn:1.0,(1txb:1.0,2ctx:1.0):1.0):1.0):1.0,1lsi:1.0):1.0,((1fas:1.0,((1ntx:1.0,(((1nean:1.0,1nor:1.0):1.0,1cod:1.0):1.0,1nxb:1.0):1.0):1.0,1drs:1.0):1.0):1.0,1tfs:1.0):1.0):1.0,((((2cdx:1.0,(1kbt:1.0,2crt:1.0):1.0):1.0,1cdta:1.0):1.0,1tgxa:1.0):1.0,1kxia:1.0):1.0):1.0,2nbta:1.0);
\ No newline at end of file
diff --git a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd b/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd
deleted file mode 100644
index f8d119ba..00000000
--- a/.nf-test/tests/3b90429fd21b937459e23c535ef473b6/output/trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd
+++ /dev/null
@@ -1,41 +0,0 @@
-((((((
-1kbt
-:0.23056,
-2cdx
-:0.23056):0.05270,
-2crt
-:0.28326):0.16720,
-1tgxa
-:0.45045):0.07675,
-1cdta
-:0.52721):0.01204,
-1kxia
-:0.53925):0.32358,((
-1tfs
-:0.82463,((
-1drs
-:0.77090,((((
-1nean
-:0.40440,
-1nor
-:0.40440):0.10350,
-1cod
-:0.50790):0.13442,
-1ntx
-:0.64232):0.01116,
-1nxb
-:0.65348):0.11742):0.03094,((((
-1txb
-:0.48209,
-2ctx
-:0.48209):0.06106,(
-1ntn
-:0.50924,
-1lsi
-:0.50924):0.03391):0.06244,
-2abxa
-:0.60559):0.14646,
-2nbta
-:0.75205):0.04979):0.02279):0.01428,
-1fas
-:0.83891):0.02392);
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log
deleted file mode 100644
index d9be2d8c..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log
+++ /dev/null
@@ -1,759 +0,0 @@
-Oct-17 13:11:07.835 [main] DEBUG nextflow.cli.Launcher - $> nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json -ansi-log false -profile test -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work
-Oct-17 13:11:07.937 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 25.04.6
-Oct-17 13:11:07.980 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/luisasantus/.nextflow/plugins; core-plugins: nf-amazon@2.15.0,nf-azure@1.16.0,nf-cloudcache@0.4.3,nf-codecommit@0.2.3,nf-console@1.2.1,nf-google@1.21.1,nf-k8s@1.0.0,nf-tower@1.11.4,nf-wave@1.12.1
-Oct-17 13:11:08.018 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
-Oct-17 13:11:08.019 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
-Oct-17 13:11:08.030 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
-Oct-17 13:11:08.060 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
-Oct-17 13:11:08.099 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 13:11:08.112 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 13:11:08.112 [main] DEBUG nextflow.config.ConfigBuilder - User config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-Oct-17 13:11:08.114 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 13:11:08.115 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/nextflow.config
-Oct-17 13:11:08.115 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-Oct-17 13:11:08.165 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /home/luisasantus/.nextflow/secrets/store.json
-Oct-17 13:11:08.169 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@f9b5552] - activable => nextflow.secret.LocalSecretsProvider@f9b5552
-Oct-17 13:11:08.211 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test`
-Oct-17 13:11:11.136 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test`
-Oct-17 13:11:11.706 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `test`
-Oct-17 13:11:11.745 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [bih, cfc_dev, uzl_omics, ifb_core, embl_hd, denbi_qbic, alice, mjolnir_globe, uppmax, giga, incliva, ilifu, ki_luria, uge, icr_alma, rosalind_uge, test_conda, lugh, mccleary, unibe_ibu, vai, czbiohub_aws, jax, roslin, tes, test_tiny, scw, unc_longleaf, tigem, tubingen_apg, apollo, ipop_up, vsc_calcua, pdc_kth, ceci_nic5, ccga_cau, humantechnopole, stjude, daisybio, eddie, medair, biowulf, apptainer, bi, bigpurple, adcra, cedars, pawsey_setonix, vsc_kul_uhasselt, pawsey_nimbus, ucl_myriad, utd_ganymede, charliecloud, fred_hutch, seattlechildrens, icr_davros, ceres, munin, rosalind, hasta, cfc, emulate_amd64, uzh, shu_bmrc, ebi_codon_slurm, ebc, ccga_dx, crick, test_pdb, ku_sund_danhead, marvin, shifter, biohpc_gen, mana, mamba, york_viking, unc_lccc, wehi, test_no_sheet, awsbatch, wustl_htcf, arcc, ceci_dragon2, imperial, maestro, software_license, cannon, genotoul, nci_gadi, abims, eva_grace, janelia, nu_genomics, googlebatch, oist, sahmri, kaust, alliance_canada, arm64, mpcdf, leicester, vsc_ugent, create, sage, cambridge, jex, podman, ebi_codon, cheaha, xanadu, nyu_hpc, test, marjorie, computerome, ucd_sonic, gpu, seg_globe, mssm, sanger, dkfz, bluebear, pasteur, einstein, ethz_euler, m3c, test_full, imb, ucl_cscluster, tuos_stanage, azurebatch, hki, seadragon, crukmi, csiro_petrichor, qmul_apocrita, wave, docker, engaging, gis, hypatia, psmn, eva, unity, cropdiversityhpc, nygc, easy_deploy, fgcz, conda, crg, singularity, mpcdf_viper, pe2, dirac, self_hosted_runner, tufts, uw_hyak_pedslabs, binac2, debug, genouest, cbe, unsw_katana, utd_juno, phoenix, seawulf, uod_hpc, fub_curta, lovelace, uct_hpc, aws_tower, binac, fsu_draco]
-Oct-17 13:11:11.798 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default
-Oct-17 13:11:11.817 [main] INFO  nextflow.cli.CmdRun - Launching `/home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf` [furious_sax] DSL2 - revision: af24e956f9
-Oct-17 13:11:11.819 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins declared=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2]
-Oct-17 13:11:11.819 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[]
-Oct-17 13:11:11.822 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[nf-schema@2.5.1, nf-co2footprint@1.0.0, nf-prov@1.2.2, nf-tower@1.11.4]
-Oct-17 13:11:11.824 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-schema version: 2.5.1
-Oct-17 13:11:11.833 [main] INFO  nextflow.plugin.PluginUpdater - Downloading plugin nf-schema@2.5.1
-Oct-17 13:11:12.606 [main] INFO  org.pf4j.util.FileUtils - Expanded plugin zip 'nf-schema-2.5.1.zip' in 'nf-schema-2.5.1'
-Oct-17 13:11:12.615 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-schema@2.5.1' resolved
-Oct-17 13:11:12.616 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-schema@2.5.1'
-Oct-17 13:11:12.622 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-schema@2.5.1
-Oct-17 13:11:12.622 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-co2footprint version: 1.0.0
-Oct-17 13:11:12.623 [main] INFO  nextflow.plugin.PluginUpdater - Downloading plugin nf-co2footprint@1.0.0
-Oct-17 13:11:13.134 [main] INFO  org.pf4j.util.FileUtils - Expanded plugin zip 'nf-co2footprint-1.0.0.zip' in 'nf-co2footprint-1.0.0'
-Oct-17 13:11:13.136 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-co2footprint@1.0.0' resolved
-Oct-17 13:11:13.136 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-co2footprint@1.0.0'
-Oct-17 13:11:13.141 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-co2footprint@1.0.0
-Oct-17 13:11:13.141 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-prov version: 1.2.2
-Oct-17 13:11:13.143 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-prov@1.2.2' resolved
-Oct-17 13:11:13.143 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-prov@1.2.2'
-Oct-17 13:11:13.145 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-prov@1.2.2
-Oct-17 13:11:13.145 [main] DEBUG nextflow.plugin.PluginUpdater - Installing plugin nf-tower version: 1.11.4
-Oct-17 13:11:13.146 [main] INFO  org.pf4j.AbstractPluginManager - Plugin 'nf-tower@1.11.4' resolved
-Oct-17 13:11:13.147 [main] INFO  org.pf4j.AbstractPluginManager - Start plugin 'nf-tower@1.11.4'
-Oct-17 13:11:13.159 [main] DEBUG nextflow.plugin.BasePlugin - Plugin started nf-tower@1.11.4
-Oct-17 13:11:13.229 [main] DEBUG nextflow.Session - Session UUID: c4db47c6-94b9-4adc-a834-3ba6f1a223b2
-Oct-17 13:11:13.230 [main] DEBUG nextflow.Session - Run name: furious_sax
-Oct-17 13:11:13.230 [main] DEBUG nextflow.Session - Executor pool size: 8
-Oct-17 13:11:13.240 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null
-Oct-17 13:11:13.248 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
-Oct-17 13:11:13.293 [main] DEBUG nextflow.cli.CmdRun - 
-  Version: 25.04.6 build 5954
-  Created: 01-07-2025 11:27 UTC (13:27 CEST)
-  System: Linux 5.15.0-134-generic
-  Runtime: Groovy 4.0.26 on OpenJDK 64-Bit Server VM 21.0.7+6-Ubuntu-0ubuntu120.04
-  Encoding: UTF-8 (UTF-8)
-  Process: 1932485@luisasantus-HP-EliteDesk-800-G5-TWR [127.0.1.1]
-  CPUs: 8 - Mem: 31.1 GB (781.3 MB) - Swap: 2 GB (785.5 MB)
-Oct-17 13:11:13.323 [main] DEBUG nextflow.Session - Work-dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work [ext2/ext3]
-Oct-17 13:11:13.369 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[]
-Oct-17 13:11:13.397 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory
-Oct-17 13:11:13.408 [main] DEBUG nextflow.Session - Observer factory: CO2FootprintFactory
-Oct-17 13:11:13.466 [main] INFO  n.co2footprint.CO2FootprintFactory - nf-co2footprint plugin  ~  version 1.0.0
-Oct-17 13:11:13.467 [main] INFO  n.co2footprint.CO2FootprintFactory - 🔕 Repeated task-specific messages (🔁) are only logged once in the console. Further occurrences are logged at DEBUG level, appearing only in the `.nextflow.log` file.
-Oct-17 13:11:14.617 [main] WARN  n.c.DataContainers.CIValueComputer - No location provided. Attempting to retrieve GLOBAL carbon intensity value.
-Oct-17 13:11:14.624 [main] INFO  n.c.DataContainers.CIDataMatrix - Using carbon intensity for GLOBAL from fallback table: 480.0 gCO₂eq/kWh.
-Oct-17 13:11:14.626 [main] DEBUG n.co2footprint.CO2FootprintConfig - No executor found in config under process.executor.
-Oct-17 13:11:14.648 [main] DEBUG nextflow.Session - Observer factory: ProvObserverFactory
-Oct-17 13:11:14.681 [main] DEBUG nextflow.Session - Observer factory: TowerFactory
-Oct-17 13:11:14.689 [main] DEBUG nextflow.Session - Observer factory (v2): LinObserverFactory
-Oct-17 13:11:14.699 [main] DEBUG nextflow.Session - Observer factory (v2): ValidationObserverFactory
-Oct-17 13:11:14.760 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory
-Oct-17 13:11:14.793 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 9; maxThreads: 1000
-Oct-17 13:11:14.997 [main] DEBUG nextflow.Session - Session start
-Oct-17 13:11:15.002 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
-Oct-17 13:11:15.007 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow started -- co2e outputs: [co2eTrace:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt, co2eSummary:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt, co2eReport:/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html]
-Oct-17 13:11:15.211 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
-Oct-17 13:11:16.069 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
-Oct-17 13:11:16.083 [main] DEBUG n.validation.config.ValidationConfig - Set `validation.monochromeLogs` to true due to the ANSI log settings.
-Oct-17 13:11:16.085 [main] DEBUG n.validation.config.ValidationConfig - Added the following parameters to the ignored parameters: [genomes, fasta, igenomes_base, genome]
-Oct-17 13:11:17.024 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
-Oct-17 13:11:17.025 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
-Oct-17 13:11:17.026 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
-Oct-17 13:11:17.033 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
-Oct-17 13:11:17.034 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
-Oct-17 13:11:21.033 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryLog:paramsSummaryLog]; plugin Id: nf-schema
-Oct-17 13:11:21.034 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [validateParameters:validateParameters]; plugin Id: nf-schema
-Oct-17 13:11:21.035 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsHelp:paramsHelp]; plugin Id: nf-schema
-Oct-17 13:11:21.040 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [paramsSummaryMap:paramsSummaryMap]; plugin Id: nf-schema
-Oct-17 13:11:21.041 [main] DEBUG nextflow.script.IncludeDef - Loading included plugin extensions with names: [samplesheetToList:samplesheetToList]; plugin Id: nf-schema
-Oct-17 13:11:21.286 [main] INFO  nextflow.Nextflow - 
-------------------------------------------------------
-                                        ,--./,-.
-        ___     __   __   __   ___     /,-._.--~'
-  |\ | |__  __ /  ` /  \ |__) |__         }  {
-  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
-                                        `._,._,'
-  nf-core/multiplesequencealign 1.2.0dev
-------------------------------------------------------
-
-Oct-17 13:11:21.334 [main] INFO  nextflow.Nextflow - Basic Input/output options
-  input                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv
-  outdir                      : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output
-
-Tools input options
-  tools                       : https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv
-
-Align options
-  build_consensus             : true
-
-Stats options
-  calc_sim                    : true
-  calc_seq_stats              : true
-  extract_plddt               : true
-
-Eval options
-  calc_irmsd                  : true
-  calc_tcs                    : true
-
-Reports options
-  shiny_app                   : /home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app
-
-Institutional config options
-  config_profile_name         : Test profile
-  config_profile_description  : Minimal test dataset to check pipeline function
-
-Generic options
-  pipelines_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign
-  trace_report_suffix         : 2025-10-17_13-11-11
-
-Core Nextflow options
-  runName                     : furious_sax
-  launchDir                   : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6
-  workDir                     : /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work
-  projectDir                  : /home/luisasantus/Desktop/multiplesequencealign
-  userName                    : luisasantus
-  profile                     : test
-  configFiles                 : /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/nextflow.config, /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config
-
-!! Only displaying parameters that differ from the pipeline defaults !!
-------------------------------------------------------
-Oct-17 13:11:21.334 [main] INFO  nextflow.Nextflow - 
-* The pipeline
-    https://doi.org/10.5281/zenodo.13889386
-
-* The nf-core framework
-    https://doi.org/10.1038/s41587-020-0439-x
-
-* Software dependencies
-    https://github.com/nf-core/multiplesequencealign/blob/master/CITATIONS.md
-
-Oct-17 13:11:21.343 [main] DEBUG n.v.parameters.ParameterValidator - Starting parameters validation
-Oct-17 13:11:21.744 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv
-Oct-17 13:11:23.046 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv' passed!
-Oct-17 13:11:23.412 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Started validating /nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv
-Oct-17 13:11:23.474 [main] DEBUG n.v.v.evaluators.SchemaEvaluator - Validation of file 'https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv' passed!
-Oct-17 13:11:23.613 [main] WARN  n.v.logging.ValidationLogger - The following invalid input values have been detected:
-
-* --modules_testdata_base_path: https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/
-
-
-Oct-17 13:11:23.615 [main] DEBUG n.v.parameters.ParameterValidator - Finishing parameters validation
-Oct-17 13:11:24.336 [main] WARN  n.v.logging.ValidationLogger - Found the following unidentified headers in /nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv:
-	- dependencies
-
-Oct-17 13:11:24.567 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 13:11:24.572 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 13:11:24.573 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 13:11:24.581 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.582 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.589 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local
-Oct-17 13:11:24.597 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=8; memory=31.1 GB; capacity=8; pollInterval=100ms; dumpInterval=5m
-Oct-17 13:11:24.600 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
-Oct-17 13:11:24.628 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.695 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 13:11:24.696 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 13:11:24.698 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 13:11:24.700 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.700 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.701 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.716 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 13:11:24.717 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 13:11:24.718 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 13:11:24.723 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.723 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.724 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.741 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 13:11:24.743 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 13:11:24.744 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 13:11:24.746 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.747 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.749 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.813 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 13:11:24.814 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CREATE_TEMPLATE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 13:11:24.816 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 13:11:24.816 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 13:11:24.818 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.818 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.818 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.856 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 13:11:24.858 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 13:11:24.859 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_SEQREFORMAT_SIM` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 13:11:24.862 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 13:11:24.863 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 13:11:24.864 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.864 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.865 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.876 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 13:11:24.877 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 13:11:24.878 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 13:11:24.879 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.879 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.880 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.900 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 13:11:24.901 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 13:11:24.902 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SIMSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 13:11:24.902 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 13:11:24.903 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 13:11:24.906 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.906 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.907 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.919 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 13:11:24.920 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALCULATE_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 13:11:24.922 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 13:11:24.923 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 13:11:24.926 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.926 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.927 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.934 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 13:11:24.935 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 13:11:24.936 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SEQSTATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 13:11:24.936 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 13:11:24.937 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 13:11:24.939 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.940 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.940 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.951 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 13:11:24.951 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:EXTRACT_PLDDT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 13:11:24.952 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 13:11:24.952 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 13:11:24.955 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.956 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.956 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.967 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 13:11:24.968 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 13:11:24.968 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 13:11:24.969 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 13:11:24.973 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:24.974 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:24.975 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS': maxForks=0; fair=false; array=0
-Oct-17 13:11:24.997 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 13:11:24.999 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 13:11:24.999 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 13:11:25.000 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 13:11:25.000 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 13:11:25.001 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.002 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.002 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.033 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 13:11:25.033 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 13:11:25.034 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 13:11:25.034 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 13:11:25.036 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.036 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.038 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.046 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 13:11:25.047 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 13:11:25.047 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 13:11:25.048 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 13:11:25.050 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.050 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.050 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.061 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 13:11:25.062 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_GUIDETREE|FAMSA_GUIDETREE|MAFFT_GUIDETREE` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 13:11:25.062 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 13:11:25.063 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 13:11:25.064 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.064 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.065 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.125 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 13:11:25.126 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 13:11:25.127 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 13:11:25.127 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 13:11:25.129 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.129 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.129 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.149 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 13:11:25.150 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 13:11:25.150 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 13:11:25.151 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 13:11:25.152 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.152 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.153 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.173 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 13:11:25.174 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 13:11:25.175 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 13:11:25.176 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 13:11:25.178 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.178 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.178 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.195 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 13:11:25.196 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:LEARNMSA_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 13:11:25.197 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 13:11:25.198 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 13:11:25.199 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.199 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.200 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.219 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 13:11:25.221 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 13:11:25.222 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 13:11:25.223 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 13:11:25.225 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.226 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.227 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.246 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 13:11:25.247 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 13:11:25.247 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 13:11:25.247 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 13:11:25.249 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.249 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.250 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.269 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 13:11:25.270 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 13:11:25.272 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 13:11:25.273 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 13:11:25.273 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 13:11:25.277 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.278 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.279 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.310 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 13:11:25.311 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 13:11:25.311 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 13:11:25.312 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 13:11:25.313 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.313 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.313 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.330 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 13:11:25.331 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 13:11:25.332 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 13:11:25.332 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 13:11:25.332 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 13:11:25.333 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.334 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.334 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.351 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 13:11:25.351 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 13:11:25.352 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 13:11:25.352 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 13:11:25.354 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.354 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.356 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.377 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 13:11:25.378 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 13:11:25.378 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 13:11:25.379 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 13:11:25.379 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 13:11:25.380 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 13:11:25.381 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.381 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.381 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.399 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 13:11:25.399 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MTMALIGN_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 13:11:25.399 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 13:11:25.400 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 13:11:25.402 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.402 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.402 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.425 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 13:11:25.426 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 13:11:25.427 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CLUSTALO_ALIGN|FAMSA_ALIGN|FOLDMASON_ALIGN|KALIGN_ALIGN|MAFFT_ALIGN|MAGUS_ALIGN|MUSCLE5_ALIGN|REGRESSIVE_ALIGN|TCOFFEE_ALIGN|TCOFFEE3D_ALIGN|UPP_ALIGN` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 13:11:25.427 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 13:11:25.428 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 13:11:25.429 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.429 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.430 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.451 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 13:11:25.452 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 13:11:25.453 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONSENSUS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 13:11:25.454 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 13:11:25.456 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 13:11:25.458 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.458 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.459 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.478 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 13:11:25.478 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PIGZ_COMPRESS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 13:11:25.479 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 13:11:25.480 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 13:11:25.481 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.481 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.481 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.512 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 13:11:25.513 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 13:11:25.513 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 13:11:25.514 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 13:11:25.514 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 13:11:25.515 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.515 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.516 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.534 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 13:11:25.535 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 13:11:25.535 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_SP` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 13:11:25.536 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 13:11:25.536 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 13:11:25.539 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.539 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.540 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.548 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 13:11:25.549 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 13:11:25.549 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_ALNCOMPARE_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 13:11:25.550 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 13:11:25.550 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 13:11:25.551 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.551 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.552 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.567 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 13:11:25.568 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 13:11:25.568 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 13:11:25.569 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 13:11:25.569 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 13:11:25.572 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.572 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.573 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.582 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 13:11:25.583 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CALC_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 13:11:25.584 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 13:11:25.584 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 13:11:25.585 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.585 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.586 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.600 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 13:11:25.601 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 13:11:25.601 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_GAPS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 13:11:25.602 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 13:11:25.602 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 13:11:25.605 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.605 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.606 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.627 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 13:11:25.628 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 13:11:25.628 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 13:11:25.628 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 13:11:25.630 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.630 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.631 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.647 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 13:11:25.648 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PARSE_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 13:11:25.648 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 13:11:25.649 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 13:11:25.650 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.650 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.651 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.679 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 13:11:25.680 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 13:11:25.681 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_IRMSD` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 13:11:25.681 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 13:11:25.681 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 13:11:25.683 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.683 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.684 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.702 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 13:11:25.702 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:TCOFFEE_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 13:11:25.703 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 13:11:25.704 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 13:11:25.707 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.707 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.709 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.743 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 13:11:25.745 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 13:11:25.746 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:CONCAT_TCS` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 13:11:25.747 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 13:11:25.748 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 13:11:25.751 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.752 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.753 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.826 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 13:11:25.827 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 13:11:25.828 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 13:11:25.829 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 13:11:25.830 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 13:11:25.832 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.832 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.833 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.868 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 13:11:25.869 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 13:11:25.870 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MERGE_STATS_EVAL` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 13:11:25.871 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 13:11:25.872 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 13:11:25.874 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.874 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.875 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.893 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 13:11:25.894 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:PREPARE_SHINY` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 13:11:25.895 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 13:11:25.896 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 13:11:25.898 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.898 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.899 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.938 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 13:11:25.940 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 13:11:25.941 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 13:11:25.944 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.944 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.945 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB': maxForks=0; fair=false; array=0
-Oct-17 13:11:25.976 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `process_medium` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 13:11:25.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:FOLDMASON_MSA2LDDTREPORT` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 13:11:25.977 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 13:11:25.978 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 13:11:25.981 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:25.982 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:25.982 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT': maxForks=0; fair=false; array=0
-Oct-17 13:11:26.084 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `process_low` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 13:11:26.084 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 13:11:26.085 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 13:11:26.086 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:26.086 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:26.087 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC': maxForks=0; fair=false; array=0
-Oct-17 13:11:26.116 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_single` matches labels `process_single` for process with name NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 13:11:26.117 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:MULTIQC` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 13:11:26.118 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 13:11:26.118 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:.*` matches process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 13:11:26.120 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null
-Oct-17 13:11:26.121 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local'
-Oct-17 13:11:26.122 [main] DEBUG nextflow.processor.TaskProcessor - Creating process 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC': maxForks=0; fair=false; array=0
-Oct-17 13:11:26.147 [main] DEBUG nextflow.Session - Config process names validation disabled as requested
-Oct-17 13:11:26.150 [main] DEBUG nextflow.Session - Igniting dataflow network (90)
-Oct-17 13:11:26.151 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:UNTAR
-Oct-17 13:11:26.152 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:CUSTOM_PDBSTOFASTA
-Oct-17 13:11:26.154 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR
-Oct-17 13:11:26.154 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPROCESS:TCOFFEE_EXTRACTFROMPDB
-Oct-17 13:11:26.155 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:TEMPLATES:CREATE_TEMPLATE
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:PARSE_SIM
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SIMSTATS
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_SEQSTATS
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:EXTRACT_PLDDT
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CONCAT_PLDDTS
-Oct-17 13:11:26.156 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:MERGE_STATS
-Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:FAMSA_GUIDETREE
-Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE
-Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:MAFFT_GUIDETREE
-Oct-17 13:11:26.161 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CLUSTALO_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:KALIGN_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:LEARNMSA_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAFFT_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MAGUS_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MUSCLE5_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:REGRESSIVE_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:UPP_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE3D_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:MTMALIGN_ALIGN
-Oct-17 13:11:26.162 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FOLDMASON_ALIGN
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:CONSENSUS
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PIGZ_COMPRESS
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_SP
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_SP
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_ALNCOMPARE_TC
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TC
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CALC_GAPS
-Oct-17 13:11:26.163 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_GAPS
-Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_IRMSD
-Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:PARSE_IRMSD
-Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_IRMSD
-Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:TCOFFEE_TCS
-Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:CONCAT_TCS
-Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL
-Oct-17 13:11:26.164 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MERGE_STATS_EVAL
-Oct-17 13:11:26.173 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_SHINY
-Oct-17 13:11:26.173 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_CREATEDB
-Oct-17 13:11:26.174 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:VISUALIZATION:FOLDMASON_MSA2LDDTREPORT
-Oct-17 13:11:26.181 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:PREPARE_MULTIQC
-Oct-17 13:11:26.182 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:MULTIQC
-Oct-17 13:11:26.183 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files:
-  Script_8251928f53ed1e0e: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/multiqc/main.nf
-  Script_ec6d7c00dbe116f1: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/guidetree/main.nf
-  Script_57af96f2e16e9c7d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_multiqc/main.nf
-  Script_63ce457e8ec7f8af: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/upp/align/main.nf
-  Script_524f120a05221479: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/kalign/align/main.nf
-  Script_09ffe02c0c021b08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/irmsd/main.nf
-  Script_8425f66c1fadad9f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/regressive/main.nf
-  Script_5729c854db3bca08: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/align/main.nf
-  Script_48b407151e6b24a5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/easymsa/main.nf
-  Script_bad8f411f3f6ffa1: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
-  Script_7d22c6ec5ed4460e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/ALIGN/main.nf
-  Script_c4e65926ddf491aa: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/famsa/align/main.nf
-  Script_eda0c798b2c6de8e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/EVALUATE/main.nf
-  Script_fca9eae676f246fb: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/TEMPLATES/main.nf
-  Script_2a3123de5fac596c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/untar/main.nf
-  Script_941048245083b1e2: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/concat/main.nf
-  Script_e0e9c77b2ae8e9b3: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/pdbtofasta/main.nf
-  Script_e823de7f89fcdd71: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/STATS/main.nf
-  Script_f0051a4616b96900: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/tcs/main.nf
-  Script_0dd893b3b9df6f1f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/guidetree/main.nf
-  Script_328b81a9521dfef3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/learnmsa/align/main.nf
-  Script_45033c525735daa5: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mtmalign/align/main.nf
-  Script_7b4cef2b5410f808: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/magus/align/main.nf
-  Script_6bd16897fec1d5bc: /home/luisasantus/Desktop/multiplesequencealign/main.nf
-  Script_6cb5b9c70ca32fe9: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/msa2lddtreport/main.nf
-  Script_08462a39a86bdf01: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/PREPROCESS/main.nf
-  Script_32fec9f5ca14d441: /home/luisasantus/Desktop/multiplesequencealign/workflows/multiplesequencealign.nf
-  Script_2388659803e1fbf6: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/clustalo/align/main.nf
-  Script_4a2e0f0221aa895f: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/VISUALIZATION/main.nf
-  Script_5c4e8d4051efa81e: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfcore_pipeline/main.nf
-  Script_c468d244616aec2a: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/local/COMPUTE_TREES/main.nf
-  Script_44d8335569596992: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/mafft/guidetree/main.nf
-  Script_a64a54a01f8015c7: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nfschema_plugin/main.nf
-  Script_b93ee6233f5bb49c: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/muscle5/super5/main.nf
-  Script_bca4a30519de91f7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/csvtk/join/main.nf
-  Script_5eaf85488d283048: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/extractfrompdb/main.nf
-  Script_4f612cfd8c52e8cd: /home/luisasantus/Desktop/multiplesequencealign/subworkflows/nf-core/utils_nextflow_pipeline/main.nf
-  Script_71bf7e9900254bc9: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_seqstats/main.nf
-  Script_34076aff62594325: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/pigz/compress/main.nf
-  Script_e1b81db8f4ff2371: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_sim/main.nf
-  Script_2cabea47677e033a: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/create_template/main.nf
-  Script_fd6913e0285b949d: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/fastavalidator/main.nf
-  Script_6ce6839019cc82da: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/prepare_shiny/main.nf
-  Script_fb9cf57a2c68281a: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/consensus/main.nf
-  Script_35f6720269e842a7: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/seqreformat/main.nf
-  Script_33c0168aace67863: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/calculate_gaps/main.nf
-  Script_008f1bb55a32fd55: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/foldmason/createdb/main.nf
-  Script_9621fcdbdfd33417: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/extract_plddt/main.nf
-  Script_f3636f12629b7eb3: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/alncompare/main.nf
-  Script_77d1ee0a0ad8268f: /home/luisasantus/Desktop/multiplesequencealign/modules/nf-core/tcoffee/align/main.nf
-  Script_417dd392a2b3179d: /home/luisasantus/Desktop/multiplesequencealign/modules/local/custom/parse_irmsd/main.nf
-Oct-17 13:11:26.184 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination 
-Oct-17 13:11:26.184 [main] DEBUG nextflow.Session - Session await
-Oct-17 13:11:26.328 [Actor Thread 16] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.005 s; external sort time: 0.021 s; total time: 0.026 s
-Oct-17 13:11:26.328 [Actor Thread 6] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 1; slices: 1; internal sort time: 0.002 s; external sort time: 0.023 s; total time: 0.025 s
-Oct-17 13:11:26.336 [Actor Thread 16] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/collect-file/796cc3eb08e6a1f3a00b04ef75acf884
-Oct-17 13:11:26.345 [Actor Thread 6] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/collect-file/1275d947742d982ce3088165cec78d64
-Oct-17 13:11:26.348 [Actor Thread 16] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-7704330683585502497
-Oct-17 13:11:26.348 [Actor Thread 6] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-4805896981161071977
-Oct-17 13:11:26.568 [FileTransfer-1] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/setoxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/stage-c4db47c6-94b9-4adc-a834-3ba6f1a223b2/4d/9a2723635312269cfd195bd99b5654/setoxin-ref.fa
-Oct-17 13:11:26.569 [FileTransfer-2] DEBUG nextflow.file.FilePorter - Copying foreign file https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/testdata/toxin-ref.fa to work dir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/stage-c4db47c6-94b9-4adc-a834-3ba6f1a223b2/67/a612175c7e4379665e0aed98b7f6ac/toxin-ref.fa
-Oct-17 13:11:26.756 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:26.759 [Task submitter] INFO  nextflow.Session - [1a/3734fe] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)
-Oct-17 13:11:26.778 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:26.779 [Task submitter] INFO  nextflow.Session - [64/bf2fea] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)
-Oct-17 13:11:26.787 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:26.789 [Task submitter] INFO  nextflow.Session - [16/eeacd9] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)
-Oct-17 13:11:26.796 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:26.802 [Task submitter] INFO  nextflow.Session - [98/b351d4] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)
-Oct-17 13:11:26.917 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/1a/3734fe7cb746984e14db5325e1e2cf]
-Oct-17 13:11:26.918 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
-Oct-17 13:11:26.930 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/64/bf2fea1ef78d0d849e20d5acbaa09b]
-Oct-17 13:11:26.931 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:26.933 [Task submitter] INFO  nextflow.Session - [61/77c7ec] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)
-Oct-17 13:11:26.952 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:26.954 [Task submitter] INFO  nextflow.Session - [a2/0aa64d] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)
-Oct-17 13:11:26.970 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/16/eeacd9ed5ba4f1b9e421d0c84f9756]
-Oct-17 13:11:26.979 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:26.981 [Task submitter] INFO  nextflow.Session - [fc/25e69c] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)
-Oct-17 13:11:26.999 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/98/b351d445264b97ba38fbfee926d9fd]
-Oct-17 13:11:27.024 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:27.039 [Task submitter] INFO  nextflow.Session - [25/4b9570] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)
-Oct-17 13:11:27.050 [TaskFinalizer-4] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=24; workQueue=LinkedBlockingQueue[-1]; allowCoreThreadTimeout=false
-Oct-17 13:11:27.174 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa]
-Oct-17 13:11:27.189 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/fc/25e69c7b3302e5effdb816ebce706a]
-Oct-17 13:11:27.228 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:27.228 [Task submitter] INFO  nextflow.Session - [c6/a8f9fe] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)
-Oct-17 13:11:27.254 [TaskFinalizer-5] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
-Oct-17 13:11:27.309 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:27.309 [Task submitter] INFO  nextflow.Session - [0d/2dee58] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)
-Oct-17 13:11:27.410 [TaskFinalizer-5] ERROR nextflow.processor.TaskProcessor - Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)'
-
-Caused by:
-  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
-
-
-Command executed:
-
-  export TEMP='./'
-  t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > "toxin-ref.txt"
-  
-  cat <<-END_VERSIONS > versions.yml
-  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM":
-      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
-  END_VERSIONS
-
-Command exit status:
-  127
-
-Command output:
-  (empty)
-
-Command error:
-  .command.sh: line 3: t_coffee: command not found
-
-Work dir:
-  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
-
-Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
-Oct-17 13:11:27.439 [TaskFinalizer-6] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/fc/25e69c7b3302e5effdb816ebce706a
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)` terminated with an error exit status (127)
-Oct-17 13:11:27.483 [TaskFinalizer-5] WARN  n.c.DataContainers.TDPDataMatrix - No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 13:11:27.486 [TaskFinalizer-5] WARN  n.co2footprint.utils.HelperFunctions - Missing trace value '%cpu' for task 6, using default: 100% for all 2 cores.
-Oct-17 13:11:27.488 [TaskFinalizer-6] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 13:11:27.518 [TaskFinalizer-6] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 2, using default: 100% for all 2 cores.
-Oct-17 13:11:27.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/c6/a8f9fe0db551dd7400542c3a5293b4]
-Oct-17 13:11:27.545 [TaskFinalizer-7] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/c6/a8f9fe0db551dd7400542c3a5293b4
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)` terminated with an error exit status (127)
-Oct-17 13:11:27.551 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
-Oct-17 13:11:27.559 [Task submitter] INFO  nextflow.Session - [0e/918212] Submitted process > NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)
-Oct-17 13:11:27.568 [TaskFinalizer-2] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<0:1>
-Oct-17 13:11:27.570 [TaskFinalizer-1] DEBUG nextflow.processor.TaskProcessor - Process NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR > Skipping output binding because one or more optional files are missing: fileoutparam<0:1>
-Oct-17 13:11:27.578 [TaskFinalizer-7] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 13:11:27.587 [TaskFinalizer-7] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 9, using default: 100% for all 2 cores.
-Oct-17 13:11:27.595 [TaskFinalizer-5] INFO  nextflow.Session - Execution cancelled -- Finishing pending tasks before exit
-Oct-17 13:11:27.598 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0d/2dee580c69f9f948c93296909259ad]
-Oct-17 13:11:27.607 [TaskFinalizer-5] ERROR nextflow.Nextflow - Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
-Oct-17 13:11:27.609 [main] DEBUG nextflow.Session - Session await > all processes finished
-Oct-17 13:11:27.612 [TaskFinalizer-8] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0d/2dee580c69f9f948c93296909259ad
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)` terminated with an error exit status (127)
-Oct-17 13:11:27.625 [Actor Thread 24] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:EVALUATE:MERGE_EVAL; work-dir=null
-  error [java.lang.InterruptedException]: java.lang.InterruptedException
-Oct-17 13:11:27.635 [Actor Thread 30] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 3; slices: 1; internal sort time: 0.008 s; external sort time: 0.003 s; total time: 0.011 s
-Oct-17 13:11:27.640 [TaskFinalizer-8] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 13:11:27.642 [TaskFinalizer-8] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 10, using default: 100% for all 2 cores.
-Oct-17 13:11:27.643 [Actor Thread 30] DEBUG nextflow.file.FileCollector - Saved collect-files list to: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/collect-file/4eca2d41a3ec783a283f72df1541ef76
-Oct-17 13:11:27.651 [Actor Thread 30] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-10490535290097349557
-Oct-17 13:11:27.757 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default); status: COMPLETED; exit: 127; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0e/9182126c1bc81b5e270fa1733618ae]
-Oct-17 13:11:27.762 [TaskFinalizer-9] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
-  task: name=NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default); work-dir=/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/0e/9182126c1bc81b5e270fa1733618ae
-  error [nextflow.exception.ProcessFailedException]: Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)` terminated with an error exit status (127)
-Oct-17 13:11:27.771 [TaskFinalizer-9] DEBUG n.c.DataContainers.TDPDataMatrix - [DUPLICATE] No CPU model detected. Using default CPU power draw value (11.45 W).
-	🔖 You can help by reporting this warning and your `.nextflow.log` file to https://github.com/nextflow-io/nf-co2footprint/issues/new?template=missing_chip.yaml. Thanks.
-Oct-17 13:11:27.774 [TaskFinalizer-9] DEBUG n.co2footprint.utils.HelperFunctions - [DUPLICATE] Missing trace value '%cpu' for task 12, using default: 100% for all 2 cores.
-Oct-17 13:11:28.226 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/25/4b9570a14b102c5bc2b9c48f35ebc8]
-Oct-17 13:11:28.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref); status: COMPLETED; exit: 0; error: -; workDir: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/a2/0aa64d4b5c61ea0a7db15ed5960777]
-Oct-17 13:11:28.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop
-Oct-17 13:11:28.327 [main] DEBUG nextflow.Session - Session await > all barriers passed
-Oct-17 13:11:28.345 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'TaskFinalizer' shutdown completed (hard=false)
-Oct-17 13:11:28.346 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'PublishDir' shutdown completed (hard=false)
-Oct-17 13:11:28.349 [main] INFO  nextflow.Nextflow - -[nf-core/multiplesequencealign] Pipeline completed with errors-
-Oct-17 13:11:28.352 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=6; failedCount=5; ignoredCount=0; cachedCount=0; pendingCount=1; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=0; succeedDuration=4.6s; failedDuration=2.1s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=8; peakCpus=16; peakMemory=24 GB; ]
-Oct-17 13:11:28.353 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file
-Oct-17 13:11:28.356 [main] DEBUG n.co2footprint.CO2FootprintObserver - Workflow completed -- rendering & saving files
-Oct-17 13:11:28.583 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done
-Oct-17 13:11:28.603 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-tower@1.11.4'
-Oct-17 13:11:28.603 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-tower
-Oct-17 13:11:28.603 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-prov@1.2.2'
-Oct-17 13:11:28.603 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-prov
-Oct-17 13:11:28.603 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-co2footprint@1.0.0'
-Oct-17 13:11:28.603 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-co2footprint
-Oct-17 13:11:28.604 [main] INFO  org.pf4j.AbstractPluginManager - Stop plugin 'nf-schema@2.5.1'
-Oct-17 13:11:28.604 [main] DEBUG nextflow.plugin.BasePlugin - Plugin stopped nf-schema
-Oct-17 13:11:28.607 [main] DEBUG nextflow.util.ThreadPoolManager - Thread pool 'FileTransfer' shutdown completed (hard=false)
-Oct-17 13:11:28.609 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json
deleted file mode 100644
index 75a73ddd..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json
+++ /dev/null
@@ -1 +0,0 @@
-{"input":"https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv","tools":"https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv","outdir":"/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output"}
\ No newline at end of file
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err
deleted file mode 100644
index 88fed570..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.err
+++ /dev/null
@@ -1 +0,0 @@
-Nextflow 25.04.8 is available - Please consider updating your version to it(B
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out
deleted file mode 100644
index 303b6227..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/std.out
+++ /dev/null
@@ -1,29 +0,0 @@
-ERROR - [nf-co2footprint] Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)'
-
-Caused by:
-  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
-
-
-Command executed:
-
-  export TEMP='./'
-  t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > "toxin-ref.txt"
-  
-  cat <<-END_VERSIONS > versions.yml
-  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM":
-      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
-  END_VERSIONS
-
-Command exit status:
-  127
-
-Command output:
-  (empty)
-
-Command error:
-  .command.sh: line 3: t_coffee: command not found
-
-Work dir:
-  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
-
-Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command lineERROR - [nf-co2footprint] Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
deleted file mode 100644
index 6af152ff..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv
+++ /dev/null
@@ -1,12 +0,0 @@
-task_id	hash	native_id	name	status	exit	realtime	%cpu	rss	peak_rss	vmem	peak_vmem	rchar	wchar	cpus	start
-3	98/b351d4	1935048	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	COMPLETED	0	13ms	21.6%	0	0	0	0	128.7 KB	838 B	2	2025-10-17 13:11:26.839
-8	16/eeacd9	1935020	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	COMPLETED	0	54ms	76.2%	3.3 MB	3.3 MB	11.8 MB	11.8 MB	130.9 KB	2.7 KB	2	2025-10-17 13:11:26.836
-2	fc/25e69c	1935468	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	FAILED	127	188ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.001
-6	61/77c7ec	1935385	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	FAILED	127	197ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:26.977
-9	c6/a8f9fe	1935639	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)	FAILED	127	214ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.314
-4	64/bf2fea	1935008	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	COMPLETED	0	19ms	100.0%	0	0	0	0	158.5 KB	1.2 KB	2	2025-10-17 13:11:26.832
-5	1a/3734fe	1934991	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	COMPLETED	0	24ms	43.2%	0	0	0	0	158.5 KB	1.2 KB	2	2025-10-17 13:11:26.821
-10	0d/2dee58	1935670	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)	FAILED	127	281ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.316
-12	0e/918212	1935777	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	FAILED	127	157ms	-	-	-	-	-	-	-	2	2025-10-17 13:11:27.599
-1	25/4b9570	1935539	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	COMPLETED	0	1s	85.2%	42 MB	42 MB	385.8 MB	385.8 MB	11.3 MB	632 B	2	2025-10-17 13:11:27.210
-7	a2/0aa64d	1935429	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	COMPLETED	0	1.2s	77.3%	20.6 MB	20.6 MB	361.4 MB	361.5 MB	11.3 MB	891 B	2	2025-10-17 13:11:26.980
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
deleted file mode 100644
index 6cb59bff..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
+++ /dev/null
@@ -1,1364 +0,0 @@
-<!DOCTYPE html>
-<!--
-  ~ Copyright 2013-2023, Seqera Labs
-  ~
-  ~ Licensed under the Apache License, Version 2.0 (the "License");
-  ~ you may not use this file except in compliance with the License.
-  ~ You may obtain a copy of the License at
-  ~
-  ~     http://www.apache.org/licenses/LICENSE-2.0
-  ~
-  ~ Unless required by applicable law or agreed to in writing, software
-  ~ distributed under the License is distributed on an "AS IS" BASIS,
-  ~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-  ~ See the License for the specific language governing permissions and
-  ~ limitations under the License.
-  -->
-<html lang="en">
-<head>
-  <meta charset="UTF-8">
-  <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-  <meta name="description" content="Nextflow workflow report for run id [furious_sax]">
-  <meta name="author" content="Sabrina Krakau">
-  <link rel="icon" type="image/png" href="https://www.nextflow.io/img/favicon.png" />
-  <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
-
-  <title>[furious_sax] Nextflow CO₂e Footprint Report</title>
-
-  <style>
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-
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-/*
- * Nextflow CO2e Report Custom CSS
- */
-
-/* General page style */
-body {
-  padding-top: 56px;
-}
-
-/* Top bar */
-.navbar {
-  box-shadow: 0 .5rem 1rem #00000011;
-}
-
-.navbar-brand img {
-  width: 20px;
-  height: 20px;
-  margin: 0 10px 5px 0;
-}
-
-/* Top part until 'CO2e Footprint Measures' */
-.jumbotron {
-  background-repeat: no-repeat;
-  background-size: cover;
-  background-image:
-    linear-gradient(180deg, rgba(255,255,255,0) 0%, rgba(255,255,255,0.5) 10%, rgba(255,255,255,1) 50%),
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')
-}
-.jumbotron .container {
-  background-color: rgba(255,255,255,0.8);
-  border-radius: 0.3rem;
-  padding: 1rem 2rem;
-}
-
-.card-wrap {
-  gap: 1.5rem;
-  margin-left: -0.75rem;
-  margin-right: -0.75rem;
-}
-
-.metric-card {
-  width: 18%;
-  text-align: center;
-  flex: 1 1 200px;
-  min-width: 200px;
-}
-
-.metric-card svg {
-  margin: 0.5rem auto;
-  height:50px;
-}
-.metric {
-  font-size: 2rem;
-  font-weight: 300;
-  line-height: 1.2;
-}
-.metric-title {
-  font-size: 1rem;
-  margin-bottom: 0.5rem;
-  font-weight: 500;
-}
-
-pre {
-  margin-bottom: 0;
-}
-pre.nfcommand {
-  white-space: pre-wrap;
-  border: 1px solid #ccc;
-  padding: 10px 15px;
-  border-radius: 5px;
-  background-color: #F0F2F4;
-  font-size: 0.8rem;
-}
-
-table td {
-  max-width: 200px;
-  overflow-x: auto;
-}
-
-.script_block.short {
-  max-height: 30px;
-  overflow-y: hidden;
-  cursor: pointer;
-}
-
-footer {
-  background-color: #ededed;
-  margin: 50px 0 0;
-  padding: 20px 0;
-  border-top: 1px solid #cccccc;
-  color: #999999;
-  font-size: 0.8rem;
-}
-footer a {
-  color: #999999;
-  text-decoration: underline;
-}
-
-#nf-form-humanreadable {
-  margin-bottom: 1rem;
-}
-
-#tasks_table_filter {
-  display: flex;
-}
-#tasks_table_filter>.btn-group {
-  vertical-align: top;
-  margin-right: 1rem;
-  height: calc(1.8125rem + 3px);
-}
-#tasks_table_filter .buttons-colvisGroup {
-  padding: 0.2rem 0.75rem;
-}
-#tasks_table_filter .dt-buttons::before {
-  content: "Filter: ";
-  padding: 0.2rem 0.5rem;
-  font-size: 1.1rem;
-}
-
-.tab-pane {
-  display: block !important;
-  position: relative !important;
-  visibility: hidden;
-  overflow: hidden;
-  width: 100%;
-  height: 0;
-  z-index: 0;
-  opacity: 0;
-  transition: visibility 0s, opacity 0.3s ease-in-out;
-}
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-.tab-pane.active {
-  visibility: visible;
-  overflow: visible;
-  height: auto;
-  z-index: 1;
-  opacity: 1;
-}
-
-.expandable-label {
-  padding: 6px 12px;
-  border-radius: 8px;
-  border: 2px solid #badbcc;
-  background-color: #d1e7dd;
-  font-weight: bold;
-  color: #0f5132;
-  display: inline-block;
-}
-
-summary {
-  cursor: pointer;
-}
-  </style>
-
-</head>
-<body>
-  <nav id="nf-report-navbar" class="navbar navbar-expand-md navbar-light fixed-top bg-white">
-    <div class="container">
-      <a class="navbar-brand" href="#">
-        <img src="data:image/png;base64,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" alt="Nextflow logo (green lanes that are crossing in the middle)">
-      Nextflow CO<sub>2</sub>e Report
-    </a>
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-        <li class="nav-item"><a class="nav-link" href="#">Summary</a></li>
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-        <li class="nav-item"><a class="nav-link" href="#tasks">Tasks</a></li>
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-        [furious_sax]
-    </code>
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-  </nav>
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-  <div class="jumbotron mb-0">
-    <div class="container">
-
-      <h1 class="display-3">Nextflow CO<sub>2</sub>e Footprint Report</h1>
-      <h2 class="text-muted mb-4"><samp>[furious_sax]</samp> </h2>
-
-      
-          <div class="alert alert-danger mb-4">
-              <h4>Workflow execution completed unsuccessfully!</h4>
-              <p>The exit status of the task that caused the workflow execution to fail was: <code>127</code>.</p>
-              <p>The full error message was:</p>
-              <pre>Error executing process > 'NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)'
-
-Caused by:
-  Process `NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)` terminated with an error exit status (127)
-
-
-Command executed:
-
-  export TEMP='./'
-  t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > "toxin-ref.txt"
-  
-  cat <<-END_VERSIONS > versions.yml
-  "NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM":
-      tcoffee: $( t_coffee -version | awk '{gsub("Version_", ""); print $3}')
-  END_VERSIONS
-
-Command exit status:
-  127
-
-Command output:
-  (empty)
-
-Command error:
-  .command.sh: line 3: t_coffee: command not found
-
-Work dir:
-  /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work/61/77c7ec3b6c330cf3849f0f1a0247aa
-
-Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line</pre>
-          </div>
-      
-
-      <dl>
-        <dt>Run times</dt>
-        <dd>
-          <span id="workflow_start">17-Oct-2025 13:11:14</span> - <span id="workflow_complete">17-Oct-2025 13:11:28</span>
-          (<span id="completed_fromnow"></span>duration: <strong>13.6s</strong>)
-        </dd>
-
-        <dt>Nextflow command</dt>
-        <dd><pre class="nfcommand"><code>nextflow -quiet -log /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/nextflow.log run /home/luisasantus/Desktop/multiplesequencealign/tests/../main.nf -c /home/luisasantus/Desktop/multiplesequencealign/nextflow.config -c /home/luisasantus/Desktop/multiplesequencealign/tests/nextflow.config -params-file /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/params.json -ansi-log false -profile test -with-trace /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/meta/trace.csv -w /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/work</code></pre></dd>
-      </dl>
-
-      <dl>
-        <dt>Nextflow version</dt>
-        <dd>version 25.04.6, build 5954 (01-07-2025 11:27 UTC)</dd>
-
-        <dt>nf-co2footprint plugin version</dt>
-        <dd>version 1.0.0</dd>
-      </dl>
-
-      <h3 class="mt-5">Total CO<sub>2</sub>e Footprint Measures</h3>
-      <div class="card-wrap d-flex flex-wrap mt-4 mb-5">
-        <div class="metric-card card p-1">
-          <span class="metric">5.65 mg</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
-          <span class="metric-title">CO<sub>2</sub>e emissions</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">11.77 mWh</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
-          <span class="metric-title">Energy consumption</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">16.2s</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
-          <span class="metric-title">Tree sequestration time</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">3.23E-5</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
-          <span class="metric-title">km by car</span>
-        </div>
-
-        <div class="metric-card card p-1">
-          <span class="metric">1.13E-5 %</span>
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
-          <span class="metric-title">Flight Paris - London</span>
-        </div>
-      </div>
-
-      <details class="mt-5">
-        <summary>
-          <span class="expandable-label">
-            Without cached tasks:
-          </span>
-        </summary>
-        <div class="card-wrap d-flex flex-wrap mt-4 mb-5" >
-          <div class="metric-card card p-1">
-            <span class="metric">5.65 mg</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m19.21 12.04l-1.53-.11l-.3-1.5A5.484 5.484 0 0 0 12 6C9.94 6 8.08 7.14 7.12 8.96l-.5.95l-1.07.11A3.99 3.99 0 0 0 2 14c0 2.21 1.79 4 4 4h13c1.65 0 3-1.35 3-3c0-1.55-1.22-2.86-2.79-2.96z" opacity=".3"/><path fill="currentColor" d="M19.35 10.04A7.49 7.49 0 0 0 12 4C9.11 4 6.6 5.64 5.35 8.04A5.994 5.994 0 0 0 0 14c0 3.31 2.69 6 6 6h13c2.76 0 5-2.24 5-5c0-2.64-2.05-4.78-4.65-4.96zM19 18H6c-2.21 0-4-1.79-4-4c0-2.05 1.53-3.76 3.56-3.97l1.07-.11l.5-.95A5.469 5.469 0 0 1 12 6c2.62 0 4.88 1.86 5.39 4.43l.3 1.5l1.53.11A2.98 2.98 0 0 1 22 15c0 1.65-1.35 3-3 3z"/></svg>
-            <span class="metric-title">CO<sub>2</sub>e emissions</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">11.77 mWh</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 48 48"><mask id="ipSEnergySocket0"><g fill="none" stroke="#fff" stroke-linecap="round" stroke-linejoin="round" stroke-width="4"><path d="M24 44c11.046 0 20-8.954 20-20S35.046 4 24 4S4 12.954 4 24s8.954 20 20 20Zm4-23v-5m-8 5v-5"/><path fill="#fff" d="M24 32a8 8 0 0 0 8-8v-3H16v3a8 8 0 0 0 8 8Z"/><path d="M24 44V32"/></g></mask><path fill="currentColor" d="M0 0h48v48H0z" mask="url(#ipSEnergySocket0)"/></svg>
-            <span class="metric-title">Energy consumption</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">16.2s</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 384 512"><path fill="currentColor" d="M378.31 378.49L298.42 288h30.63c9.01 0 16.98-5 20.78-13.06c3.8-8.04 2.55-17.26-3.28-24.05L268.42 160h28.89c9.1 0 17.3-5.35 20.86-13.61c3.52-8.13 1.86-17.59-4.24-24.08L203.66 4.83c-6.03-6.45-17.28-6.45-23.32 0L70.06 122.31c-6.1 6.49-7.75 15.95-4.24 24.08C69.38 154.65 77.59 160 86.69 160h28.89l-78.14 90.91c-5.81 6.78-7.06 15.99-3.27 24.04C37.97 283 45.93 288 54.95 288h30.63L5.69 378.49c-6 6.79-7.36 16.09-3.56 24.26c3.75 8.05 12 13.25 21.01 13.25H160v24.45l-30.29 48.4c-5.32 10.64 2.42 23.16 14.31 23.16h95.96c11.89 0 19.63-12.52 14.31-23.16L224 440.45V416h136.86c9.01 0 17.26-5.2 21.01-13.25c3.8-8.17 2.44-17.47-3.56-24.26z"/></svg>
-            <span class="metric-title">Tree sequestration time</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">3.23E-5</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="m5 11l1.5-4.5h11L19 11m-1.5 5a1.5 1.5 0 0 1-1.5-1.5a1.5 1.5 0 0 1 1.5-1.5a1.5 1.5 0 0 1 1.5 1.5a1.5 1.5 0 0 1-1.5 1.5m-11 0A1.5 1.5 0 0 1 5 14.5A1.5 1.5 0 0 1 6.5 13A1.5 1.5 0 0 1 8 14.5A1.5 1.5 0 0 1 6.5 16M18.92 6c-.2-.58-.76-1-1.42-1h-11c-.66 0-1.22.42-1.42 1L3 12v8a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-1h12v1a1 1 0 0 0 1 1h1a1 1 0 0 0 1-1v-8l-2.08-6Z"/></svg>
-            <span class="metric-title">km by car</span>
-          </div>
-
-          <div class="metric-card card p-1">
-            <span class="metric">1.13E-5 %</span>
-            <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path fill="currentColor" d="M20.56 3.91c.59.59.59 1.54 0 2.12l-3.89 3.89l2.12 9.19l-1.41 1.42l-3.88-7.43L9.6 17l.36 2.47l-1.07 1.06l-1.76-3.18l-3.19-1.77L5 14.5l2.5.37L11.37 11L3.94 7.09l1.42-1.41l9.19 2.12l3.89-3.89c.56-.58 1.56-.58 2.12 0Z"/></svg>
-            <span class="metric-title">Flight Paris - London</span>
-          </div>
-        </div>
-      </details>
-
-      
-
-    </div>
-  </div>
-
-  <div class="container">
-    <h2 id="resources" style="padding-top: 20px;" class="mb-3">CO<sub>2</sub>e Footprint Measures</h2>
-    <ul class="nav nav-tabs mb-3" id="co2eplot_tabs" role="tablist">
-      <li class="nav-item">
-        <a class="nav-link active" id="co2e-total-plot_tablink" data-toggle="tab" href="#co2e-total-plot_tabpanel" role="tab" aria-controls="co2e-total-plot_tabpanel" aria-expanded="false">
-          All tasks
-        </a>
-      </li>
-      <li class="nav-item">
-        <a class="nav-link" id="co2e-non-cached-plot_tablink" data-toggle="tab" href="#co2e-non-cached-plot_tabpanel" role="tab" aria-controls="co2e-non-cached-plot_tabpanel" aria-expanded="false">
-          Without cached tasks
-        </a>
-      </li>
-    </ul>
-    <div class="tab-content" id="co2eplot_tabcontent">
-      <div class="tab-pane fade show active" id="co2e-total-plot_tabpanel" role="tabpanel">
-        <div id="co2e-total-plot"></div>
-      </div>
-      <div class="tab-pane fade" id="co2e-non-cached-plot_tabpanel" role="tabpanel">
-        <div id="co2e-non-cached-plot"></div>
-      </div>
-    </div>
-    <p class="mt-3">The plot shows the distribution of CO<sub>2</sub>e emissions and corresponding energy consumptions for each workflow process. The values that are displayed when hovering over the plot refer to the CO<sub>2</sub>e emissions.</p>
-  </div>
-
-  <div class="container">
-    <h2 id="tasks" style="padding-top: 20px;">Tasks</h2>
-    <div id="tasks-present-table" class="mb-3">
-      <form class="form-inline" id="nf-form-humanreadable">
-        <label class="mr-sm-2" for="nf-table-humanreadable">Values shown as:</label>
-        <select class="custom-select mb-2 mr-sm-2 mb-sm-0" id="nf-table-humanreadable">
-          <option value="true">Human readable</option>
-          <option value="false">Raw values</option>
-        </select>
-      </form>
-    </div>
-    <div class="container-fluid">
-      <table class="table small table-striped" id="tasks_table"></table>
-    </div>
-    <div id="tasks-omitted-table">
-      (tasks table omitted because the dataset is too big)
-    </div>
-    <p class="mt-3">This table shows information about each task in the workflow. Use the search box on the right
-      to filter rows for specific values. Clicking headers will sort the table by that value and
-      scrolling side to side will reveal more columns.</p>
-  </div>
-
-  <div class="container my-5">
-    <div class="card shadow-sm">
-      <div class="card-body">
-        <h2 id="attribution-and-references" style="padding-top: 20px;">Data Attribution &amp; References</h2>
-        <ul class="pl-3 mb-0">
-          <li class="mb-3">
-            The calculation of these values is based on the carbon footprint computation method
-            developed in the
-            <a href="https://www.green-algorithms.org/" target="_blank" rel="noopener" style="color: #28a745">Green Algorithms</a> project.<br>
-            <span class="font-italic small">
-              Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
-              Adv. Sci. 2021, 2100707.
-              <a href="https://doi.org/10.1002/advs.202100707" target="_blank" rel="noopener">
-                https://doi.org/10.1002/advs.202100707
-              </a>
-            </span>
-          </li>
-          <li class="mb-3">
-            
-              The carbon intensity (CI) values used in the calculation originate from
-              <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">Electricity Maps</a>
-              under the
-              <a href="https://opendatacommons.org/licenses/odbl/1-0/" target="_blank" rel="noopener">Open Database License (ODbL)</a>.<br>
-              <span class="font-italic small">
-                Electricity Maps (2025). 2024 Yearly Carbon Intensity Data (Version January 27, 2025). Electricity Maps.
-                <a href="https://www.electricitymaps.com/" target="_blank" rel="noopener">
-                  https://www.electricitymaps.com
-                </a>
-              </span>
-            
-          </li>
-          <li class="mb-3">
-            The processors thermal design power (TDP) values used in the calculation originate from
-            <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">WikiChip</a>
-            under the
-            <a href="https://creativecommons.org/licenses/by-nc-sa/4.0/" target="_blank" rel="noopener">CC BY-NC-SA 4.0</a> license.<br>
-            <span class="font-italic small">
-              WikiChip LLC (2025). CPU Data including Thermal Design Power (TDP) (Version June 20, 2025).
-              WikiChip.
-              <a href="https://en.wikichip.org/wiki/WikiChip" target="_blank" rel="noopener">
-                https://en.wikichip.org/wiki/WikiChip
-              </a>
-            </span>
-          </li>
-        </ul>
-      </div>
-    </div>
-  </div>
-
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-    <div id="options-table">
-      <h2 id="options" style="padding-top: 20px;">Options</h2>
-      <p class="mt-3 mb-3">This table shows the nf-co2footprint plugin options that were used to calculate the CO<sub>2</sub>e footprint measures.</p>
-    </div>
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-      <table class="table small table-striped" id="options_table"></table>
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a=e.Event(l.SHOW);if(e(this._element).trigger(a),!a.isDefaultPrevented()){r&&(i._jQueryInterface.call(e(r),"hide"),o||e(r).data(n,null));var c=this._getDimension();e(this._element).removeClass(h.COLLAPSE).addClass(h.COLLAPSING),this._element.style[c]=0,this._triggerArray.length&&e(this._triggerArray).removeClass(h.COLLAPSED).attr("aria-expanded",!0),this.setTransitioning(!0);var d=function(){e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).addClass(h.SHOW),t._element.style[c]="",t.setTransitioning(!1),e(t._element).trigger(l.SHOWN)};if(s.supportsTransitionEnd()){var f="scroll"+(c[0].toUpperCase()+c.slice(1));e(this._element).one(s.TRANSITION_END,d).emulateTransitionEnd(600),this._element.style[c]=this._element[f]+"px"}else d()}}}},d.hide=function(){var t=this;if(!this._isTransitioning&&e(this._element).hasClass(h.SHOW)){var n=e.Event(l.HIDE);if(e(this._element).trigger(n),!n.isDefaultPrevented()){var i=this._getDimension();if(this._element.style[i]=this._element.getBoundingClientRect()[i]+"px",s.reflow(this._element),e(this._element).addClass(h.COLLAPSING).removeClass(h.COLLAPSE).removeClass(h.SHOW),this._triggerArray.length)for(var r=0;r<this._triggerArray.length;r++){var o=this._triggerArray[r],a=s.getSelectorFromElement(o);null!==a&&(e(a).hasClass(h.SHOW)||e(o).addClass(h.COLLAPSED).attr("aria-expanded",!1))}this.setTransitioning(!0);var c=function(){t.setTransitioning(!1),e(t._element).removeClass(h.COLLAPSING).addClass(h.COLLAPSE).trigger(l.HIDDEN)};this._element.style[i]="",s.supportsTransitionEnd()?e(this._element).one(s.TRANSITION_END,c).emulateTransitionEnd(600):c()}}},d.setTransitioning=function(t){this._isTransitioning=t},d.dispose=function(){e.removeData(this._element,n),this._config=null,this._parent=null,this._element=null,this._triggerArray=null,this._isTransitioning=null},d._getConfig=function(n){return 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t=a._getParentFromElement(this._element),i=e(this._menu).hasClass(c.SHOW);if(a._clearMenus(),!i){var s={relatedTarget:this._element},r=e.Event(h.SHOW,s);if(e(t).trigger(r),!r.isDefaultPrevented()){var o=this._element;e(t).hasClass(c.DROPUP)&&(e(this._menu).hasClass(c.MENULEFT)||e(this._menu).hasClass(c.MENURIGHT))&&(o=t),this._popper=new n(o,this._menu,this._getPopperConfig()),"ontouchstart"in document.documentElement&&!e(t).closest(u.NAVBAR_NAV).length&&e("body").children().on("mouseover",null,e.noop),this._element.focus(),this._element.setAttribute("aria-expanded",!0),e(this._menu).toggleClass(c.SHOW),e(t).toggleClass(c.SHOW).trigger(e.Event(h.SHOWN,s))}}}},g.dispose=function(){e.removeData(this._element,i),e(this._element).off(o),this._element=null,this._menu=null,null!==this._popper&&this._popper.destroy(),this._popper=null},g.update=function(){this._inNavbar=this._detectNavbar(),null!==this._popper&&this._popper.scheduleUpdate()},g._addEventListeners=function(){var t=this;e(this._element).on(h.CLICK,function(e){e.preventDefault(),e.stopPropagation(),t.toggle()})},g._getConfig=function(n){return n=e.extend({},this.constructor.Default,e(this._element).data(),n),s.typeCheckConfig(t,n,this.constructor.DefaultType),n},g._getMenuElement=function(){if(!this._menu){var t=a._getParentFromElement(this._element);this._menu=e(t).find(u.MENU)[0]}return this._menu},g._getPlacement=function(){var t=e(this._element).parent(),n=d.BOTTOM;return t.hasClass(c.DROPUP)?(n=d.TOP,e(this._menu).hasClass(c.MENURIGHT)&&(n=d.TOPEND)):e(this._menu).hasClass(c.MENURIGHT)&&(n=d.BOTTOMEND),n},g._detectNavbar=function(){return e(this._element).closest(".navbar").length>0},g._getPopperConfig=function(){var t=this,n={};"function"==typeof this._config.offset?n.fn=function(n){return n.offsets=e.extend({},n.offsets,t._config.offset(n.offsets)||{}),n}:n.offset=this._config.offset;var i={placement:this._getPlacement(),modifiers:{offset:n,flip:{enabled:this._config.flip}}};return this._inNavbar&&(i.modifiers.applyStyle={enabled:!this._inNavbar}),i},a._jQueryInterface=function(t){return this.each(function(){var n=e(this).data(i),s="object"==typeof t?t:null;if(n||(n=new a(this,s),e(this).data(i,n)),"string"==typeof t){if("undefined"==typeof n[t])throw new Error('No method named "'+t+'"');n[t]()}})},a._clearMenus=function(t){if(!t||3!==t.which&&("keyup"!==t.type||9===t.which))for(var n=e.makeArray(e(u.DATA_TOGGLE)),s=0;s<n.length;s++){var r=a._getParentFromElement(n[s]),o=e(n[s]).data(i),l={relatedTarget:n[s]};if(o){var d=o._menu;if(e(r).hasClass(c.SHOW)&&!(t&&("click"===t.type&&/input|textarea/i.test(t.target.tagName)||"keyup"===t.type&&9===t.which)&&e.contains(r,t.target))){var f=e.Event(h.HIDE,l);e(r).trigger(f),f.isDefaultPrevented()||("ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),n[s].setAttribute("aria-expanded","false"),e(d).removeClass(c.SHOW),e(r).removeClass(c.SHOW).trigger(e.Event(h.HIDDEN,l)))}}}},a._getParentFromElement=function(t){var n,i=s.getSelectorFromElement(t);return i&&(n=e(i)[0]),n||t.parentNode},a._dataApiKeydownHandler=function(t){if(!(!l.test(t.which)||/button/i.test(t.target.tagName)&&32===t.which||/input|textarea/i.test(t.target.tagName)||(t.preventDefault(),t.stopPropagation(),this.disabled||e(this).hasClass(c.DISABLED)))){var n=a._getParentFromElement(this),i=e(n).hasClass(c.SHOW);if((i||27===t.which&&32===t.which)&&(!i||27!==t.which&&32!==t.which)){var s=e(n).find(u.VISIBLE_ITEMS).get();if(s.length){var r=s.indexOf(t.target);38===t.which&&r>0&&r--,40===t.which&&r<s.length-1&&r++,r<0&&(r=0),s[r].focus()}}else{if(27===t.which){var o=e(n).find(u.DATA_TOGGLE)[0];e(o).trigger("focus")}e(this).trigger("click")}}},r(a,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return f}},{key:"DefaultType",get:function(){return _}}]),a}();return e(document).on(h.KEYDOWN_DATA_API,u.DATA_TOGGLE,g._dataApiKeydownHandler).on(h.KEYDOWN_DATA_API,u.MENU,g._dataApiKeydownHandler).on(h.CLICK_DATA_API+" "+h.KEYUP_DATA_API,g._clearMenus).on(h.CLICK_DATA_API,u.DATA_TOGGLE,function(t){t.preventDefault(),t.stopPropagation(),g._jQueryInterface.call(e(this),"toggle")}).on(h.CLICK_DATA_API,u.FORM_CHILD,function(t){t.stopPropagation()}),e.fn[t]=g._jQueryInterface,e.fn[t].Constructor=g,e.fn[t].noConflict=function(){return e.fn[t]=a,g._jQueryInterface},g}(),d=function(){var 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r=e.Event(l.SHOWN,{relatedTarget:t}),o=function(){n._config.focus&&n._element.focus(),n._isTransitioning=!1,e(n._element).trigger(r)};i?e(this._dialog).one(s.TRANSITION_END,o).emulateTransitionEnd(300):o()},u._enforceFocus=function(){var t=this;e(document).off(l.FOCUSIN).on(l.FOCUSIN,function(n){document===n.target||t._element===n.target||e(t._element).has(n.target).length||t._element.focus()})},u._setEscapeEvent=function(){var t=this;this._isShown&&this._config.keyboard?e(this._element).on(l.KEYDOWN_DISMISS,function(e){27===e.which&&(e.preventDefault(),t.hide())}):this._isShown||e(this._element).off(l.KEYDOWN_DISMISS)},u._setResizeEvent=function(){var t=this;this._isShown?e(window).on(l.RESIZE,function(e){return t.handleUpdate(e)}):e(window).off(l.RESIZE)},u._hideModal=function(){var t=this;this._element.style.display="none",this._element.setAttribute("aria-hidden",!0),this._isTransitioning=!1,this._showBackdrop(function(){e(document.body).removeClass(h.OPEN),t._resetAdjustments(),t._resetScrollbar(),e(t._element).trigger(l.HIDDEN)})},u._removeBackdrop=function(){this._backdrop&&(e(this._backdrop).remove(),this._backdrop=null)},u._showBackdrop=function(t){var n=this,i=e(this._element).hasClass(h.FADE)?h.FADE:"";if(this._isShown&&this._config.backdrop){var r=s.supportsTransitionEnd()&&i;if(this._backdrop=document.createElement("div"),this._backdrop.className=h.BACKDROP,i&&e(this._backdrop).addClass(i),e(this._backdrop).appendTo(document.body),e(this._element).on(l.CLICK_DISMISS,function(t){n._ignoreBackdropClick?n._ignoreBackdropClick=!1:t.target===t.currentTarget&&("static"===n._config.backdrop?n._element.focus():n.hide())}),r&&s.reflow(this._backdrop),e(this._backdrop).addClass(h.SHOW),!t)return;if(!r)return void 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t=this;if(this._isBodyOverflowing){e(c.FIXED_CONTENT).each(function(n,i){var s=e(i)[0].style.paddingRight,r=e(i).css("padding-right");e(i).data("padding-right",s).css("padding-right",parseFloat(r)+t._scrollbarWidth+"px")}),e(c.STICKY_CONTENT).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)-t._scrollbarWidth+"px")}),e(c.NAVBAR_TOGGLER).each(function(n,i){var s=e(i)[0].style.marginRight,r=e(i).css("margin-right");e(i).data("margin-right",s).css("margin-right",parseFloat(r)+t._scrollbarWidth+"px")});var n=document.body.style.paddingRight,i=e("body").css("padding-right");e("body").data("padding-right",n).css("padding-right",parseFloat(i)+this._scrollbarWidth+"px")}},u._resetScrollbar=function(){e(c.FIXED_CONTENT).each(function(t,n){var i=e(n).data("padding-right");"undefined"!=typeof i&&e(n).css("padding-right",i).removeData("padding-right")}),e(c.STICKY_CONTENT+", 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r=e.contains(this.element.ownerDocument.documentElement,this.element);if(i.isDefaultPrevented()||!r)return;var a=this.getTipElement(),l=s.getUID(this.constructor.NAME);a.setAttribute("id",l),this.element.setAttribute("aria-describedby",l),this.setContent(),this.config.animation&&e(a).addClass(f.FADE);var h="function"==typeof this.config.placement?this.config.placement.call(this,a,this.element):this.config.placement,c=this._getAttachment(h);this.addAttachmentClass(c);var d=!1===this.config.container?document.body:e(this.config.container);e(a).data(this.constructor.DATA_KEY,this),e.contains(this.element.ownerDocument.documentElement,this.tip)||e(a).appendTo(d),e(this.element).trigger(this.constructor.Event.INSERTED),this._popper=new 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n=this,i=this.getTipElement(),r=e.Event(this.constructor.Event.HIDE),o=function(){n._hoverState!==u.SHOW&&i.parentNode&&i.parentNode.removeChild(i),n._cleanTipClass(),n.element.removeAttribute("aria-describedby"),e(n.element).trigger(n.constructor.Event.HIDDEN),null!==n._popper&&n._popper.destroy(),t&&t()};e(this.element).trigger(r),r.isDefaultPrevented()||(e(i).removeClass(f.SHOW),"ontouchstart"in document.documentElement&&e("body").children().off("mouseover",null,e.noop),this._activeTrigger[g.CLICK]=!1,this._activeTrigger[g.FOCUS]=!1,this._activeTrigger[g.HOVER]=!1,s.supportsTransitionEnd()&&e(this.tip).hasClass(f.FADE)?e(i).one(s.TRANSITION_END,o).emulateTransitionEnd(150):o(),this._hoverState="")},m.update=function(){null!==this._popper&&this._popper.scheduleUpdate()},m.isWithContent=function(){return Boolean(this.getTitle())},m.addAttachmentClass=function(t){e(this.getTipElement()).addClass("bs-tooltip-"+t)},m.getTipElement=function(){return this.tip=this.tip||e(this.config.template)[0],this.tip},m.setContent=function(){var t=e(this.getTipElement());this.setElementContent(t.find(_.TOOLTIP_INNER),this.getTitle()),t.removeClass(f.FADE+" "+f.SHOW)},m.setElementContent=function(t,n){var i=this.config.html;"object"==typeof n&&(n.nodeType||n.jquery)?i?e(n).parent().is(t)||t.empty().append(n):t.text(e(n).text()):t[i?"html":"text"](n)},m.getTitle=function(){var t=this.element.getAttribute("data-original-title");return t||(t="function"==typeof this.config.title?this.config.title.call(this.element):this.config.title),t},m._getAttachment=function(t){return h[t.toUpperCase()]},m._setListeners=function(){var t=this;this.config.trigger.split(" ").forEach(function(n){if("click"===n)e(t.element).on(t.constructor.Event.CLICK,t.config.selector,function(e){return t.toggle(e)});else if(n!==g.MANUAL){var i=n===g.HOVER?t.constructor.Event.MOUSEENTER:t.constructor.Event.FOCUSIN,s=n===g.HOVER?t.constructor.Event.MOUSELEAVE:t.constructor.Event.FOCUSOUT;e(t.element).on(i,t.config.selector,function(e){return t._enter(e)}).on(s,t.config.selector,function(e){return t._leave(e)})}e(t.element).closest(".modal").on("hide.bs.modal",function(){return t.hide()})}),this.config.selector?this.config=e.extend({},this.config,{trigger:"manual",selector:""}):this._fixTitle()},m._fixTitle=function(){var t=typeof this.element.getAttribute("data-original-title");(this.element.getAttribute("title")||"string"!==t)&&(this.element.setAttribute("data-original-title",this.element.getAttribute("title")||""),this.element.setAttribute("title",""))},m._enter=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusin"===t.type?g.FOCUS:g.HOVER]=!0),e(n.getTipElement()).hasClass(f.SHOW)||n._hoverState===u.SHOW?n._hoverState=u.SHOW:(clearTimeout(n._timeout),n._hoverState=u.SHOW,n.config.delay&&n.config.delay.show?n._timeout=setTimeout(function(){n._hoverState===u.SHOW&&n.show()},n.config.delay.show):n.show())},m._leave=function(t,n){var i=this.constructor.DATA_KEY;(n=n||e(t.currentTarget).data(i))||(n=new this.constructor(t.currentTarget,this._getDelegateConfig()),e(t.currentTarget).data(i,n)),t&&(n._activeTrigger["focusout"===t.type?g.FOCUS:g.HOVER]=!1),n._isWithActiveTrigger()||(clearTimeout(n._timeout),n._hoverState=u.OUT,n.config.delay&&n.config.delay.hide?n._timeout=setTimeout(function(){n._hoverState===u.OUT&&n.hide()},n.config.delay.hide):n.hide())},m._isWithActiveTrigger=function(){for(var t in this._activeTrigger)if(this._activeTrigger[t])return!0;return!1},m._getConfig=function(n){return"number"==typeof(n=e.extend({},this.constructor.Default,e(this.element).data(),n)).delay&&(n.delay={show:n.delay,hide:n.delay}),"number"==typeof n.title&&(n.title=n.title.toString()),"number"==typeof n.content&&(n.content=n.content.toString()),s.typeCheckConfig(t,n,this.constructor.DefaultType),n},m._getDelegateConfig=function(){var t={};if(this.config)for(var e in this.config)this.constructor.Default[e]!==this.config[e]&&(t[e]=this.config[e]);return t},m._cleanTipClass=function(){var t=e(this.getTipElement()),n=t.attr("class").match(a);null!==n&&n.length>0&&t.removeClass(n.join(""))},m._handlePopperPlacementChange=function(t){this._cleanTipClass(),this.addAttachmentClass(this._getAttachment(t.placement))},m._fixTransition=function(){var t=this.getTipElement(),n=this.config.animation;null===t.getAttribute("x-placement")&&(e(t).removeClass(f.FADE),this.config.animation=!1,this.hide(),this.show(),this.config.animation=n)},o._jQueryInterface=function(t){return this.each(function(){var n=e(this).data("bs.tooltip"),i="object"==typeof t&&t;if((n||!/dispose|hide/.test(t))&&(n||(n=new o(this,i),e(this).data("bs.tooltip",n)),"string"==typeof t)){if("undefined"==typeof n[t])throw new Error('No method named "'+t+'"');n[t]()}})},r(o,null,[{key:"VERSION",get:function(){return"4.0.0-beta.2"}},{key:"Default",get:function(){return c}},{key:"NAME",get:function(){return t}},{key:"DATA_KEY",get:function(){return"bs.tooltip"}},{key:"Event",get:function(){return d}},{key:"EVENT_KEY",get:function(){return i}},{key:"DefaultType",get:function(){return l}}]),o}();return e.fn[t]=m._jQueryInterface,e.fn[t].Constructor=m,e.fn[t].noConflict=function(){return e.fn[t]=o,m._jQueryInterface},m}(),_=function(){var 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-X(m.defaults);m.defaults.column={aDataSort:null,iDataSort:-1,asSorting:["asc","desc"],bSearchable:!0,bSortable:!0,bVisible:!0,fnCreatedCell:null,mData:null,mRender:null,sCellType:"td",sClass:"",sContentPadding:"",sDefaultContent:null,sName:"",sSortDataType:"std",sTitle:null,sType:null,sWidth:null};X(m.defaults.column);m.models.oSettings={oFeatures:{bAutoWidth:null,bDeferRender:null,bFilter:null,bInfo:null,bLengthChange:null,bPaginate:null,bProcessing:null,bServerSide:null,bSort:null,bSortMulti:null,
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-aoDrawCallback:[],aoRowCreatedCallback:[],aoPreDrawCallback:[],aoInitComplete:[],aoStateSaveParams:[],aoStateLoadParams:[],aoStateLoaded:[],sTableId:"",nTable:null,nTHead:null,nTFoot:null,nTBody:null,nTableWrapper:null,bDeferLoading:!1,bInitialised:!1,aoOpenRows:[],sDom:null,searchDelay:null,sPaginationType:"two_button",iStateDuration:0,aoStateSave:[],aoStateLoad:[],oSavedState:null,oLoadedState:null,sAjaxSource:null,sAjaxDataProp:null,bAjaxDataGet:!0,jqXHR:null,json:k,oAjaxData:k,fnServerData:null,
-aoServerParams:[],sServerMethod:null,fnFormatNumber:null,aLengthMenu:null,iDraw:0,bDrawing:!1,iDrawError:-1,_iDisplayLength:10,_iDisplayStart:0,_iRecordsTotal:0,_iRecordsDisplay:0,oClasses:{},bFiltered:!1,bSorted:!1,bSortCellsTop:null,oInit:null,aoDestroyCallback:[],fnRecordsTotal:function(){return"ssp"==y(this)?1*this._iRecordsTotal:this.aiDisplayMaster.length},fnRecordsDisplay:function(){return"ssp"==y(this)?1*this._iRecordsDisplay:this.aiDisplay.length},fnDisplayEnd:function(){var a=this._iDisplayLength,
-b=this._iDisplayStart,c=b+a,d=this.aiDisplay.length,e=this.oFeatures,f=e.bPaginate;return e.bServerSide?!1===f||-1===a?b+d:Math.min(b+a,this._iRecordsDisplay):!f||c>d||-1===a?d:c},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null,aLastSort:[],oPlugins:{},rowIdFn:null,rowId:null};m.ext=x={buttons:{},classes:{},build:"bs4/dt-1.10.16/b-1.4.2/b-colvis-1.4.2/b-html5-1.4.2/cr-1.4.1",errMode:"alert",feature:[],search:[],selector:{cell:[],column:[],row:[]},internal:{},legacy:{ajax:null},pager:{},renderer:{pageButton:{},header:{}},
-order:{},type:{detect:[],search:{},order:{}},_unique:0,fnVersionCheck:m.fnVersionCheck,iApiIndex:0,oJUIClasses:{},sVersion:m.version};h.extend(x,{afnFiltering:x.search,aTypes:x.type.detect,ofnSearch:x.type.search,oSort:x.type.order,afnSortData:x.order,aoFeatures:x.feature,oApi:x.internal,oStdClasses:x.classes,oPagination:x.pager});h.extend(m.ext.classes,{sTable:"dataTable",sNoFooter:"no-footer",sPageButton:"paginate_button",sPageButtonActive:"current",sPageButtonDisabled:"disabled",sStripeOdd:"odd",
-sStripeEven:"even",sRowEmpty:"dataTables_empty",sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sFilterInput:"",sLengthSelect:"",sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",
-sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sHeaderTH:"",sFooterTH:"",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",sJUIHeader:"",sJUIFooter:""});var Kb=m.ext.pager;h.extend(Kb,{simple:function(){return["previous","next"]},full:function(){return["first","previous","next","last"]},numbers:function(a,b){return[ha(a,
-b)]},simple_numbers:function(a,b){return["previous",ha(a,b),"next"]},full_numbers:function(a,b){return["first","previous",ha(a,b),"next","last"]},first_last_numbers:function(a,b){return["first",ha(a,b),"last"]},_numbers:ha,numbers_length:7});h.extend(!0,m.ext.renderer,{pageButton:{_:function(a,b,c,d,e,f){var g=a.oClasses,j=a.oLanguage.oPaginate,i=a.oLanguage.oAria.paginate||{},n,l,m=0,o=function(b,d){var k,s,u,r,v=function(b){Sa(a,b.data.action,true)};k=0;for(s=d.length;k<s;k++){r=d[k];if(h.isArray(r)){u=
-h("<"+(r.DT_el||"div")+"/>").appendTo(b);o(u,r)}else{n=null;l="";switch(r){case "ellipsis":b.append('<span class="ellipsis">&#x2026;</span>');break;case "first":n=j.sFirst;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "previous":n=j.sPrevious;l=r+(e>0?"":" "+g.sPageButtonDisabled);break;case "next":n=j.sNext;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;case "last":n=j.sLast;l=r+(e<f-1?"":" "+g.sPageButtonDisabled);break;default:n=r+1;l=e===r?g.sPageButtonActive:""}if(n!==null){u=h("<a>",{"class":g.sPageButton+
-" "+l,"aria-controls":a.sTableId,"aria-label":i[r],"data-dt-idx":m,tabindex:a.iTabIndex,id:c===0&&typeof r==="string"?a.sTableId+"_"+r:null}).html(n).appendTo(b);Va(u,{action:r},v);m++}}}},s;try{s=h(b).find(G.activeElement).data("dt-idx")}catch(u){}o(h(b).empty(),d);s!==k&&h(b).find("[data-dt-idx="+s+"]").focus()}}});h.extend(m.ext.type.detect,[function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c)?"num"+c:null},function(a){if(a&&!(a instanceof Date)&&!Zb.test(a))return null;var b=Date.parse(a);
-return null!==b&&!isNaN(b)||L(a)?"date":null},function(a,b){var c=b.oLanguage.sDecimal;return Ya(a,c,!0)?"num-fmt"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c)?"html-num"+c:null},function(a,b){var c=b.oLanguage.sDecimal;return Pb(a,c,!0)?"html-num-fmt"+c:null},function(a){return L(a)||"string"===typeof a&&-1!==a.indexOf("<")?"html":null}]);h.extend(m.ext.type.search,{html:function(a){return L(a)?a:"string"===typeof a?a.replace(Mb," ").replace(Aa,""):""},string:function(a){return L(a)?
-a:"string"===typeof a?a.replace(Mb," "):a}});var za=function(a,b,c,d){if(0!==a&&(!a||"-"===a))return-Infinity;b&&(a=Ob(a,b));a.replace&&(c&&(a=a.replace(c,"")),d&&(a=a.replace(d,"")));return 1*a};h.extend(x.type.order,{"date-pre":function(a){return Date.parse(a)||-Infinity},"html-pre":function(a){return L(a)?"":a.replace?a.replace(/<.*?>/g,"").toLowerCase():a+""},"string-pre":function(a){return L(a)?"":"string"===typeof a?a.toLowerCase():!a.toString?"":a.toString()},"string-asc":function(a,b){return a<
-b?-1:a>b?1:0},"string-desc":function(a,b){return a<b?1:a>b?-1:0}});cb("");h.extend(!0,m.ext.renderer,{header:{_:function(a,b,c,d){h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(c.sSortingClass+" "+d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass)}})},jqueryui:function(a,b,c,d){h("<div/>").addClass(d.sSortJUIWrapper).append(b.contents()).append(h("<span/>").addClass(d.sSortIcon+" "+c.sSortingClassJUI)).appendTo(b);
-h(a.nTable).on("order.dt.DT",function(e,f,g,h){if(a===f){e=c.idx;b.removeClass(d.sSortAsc+" "+d.sSortDesc).addClass(h[e]=="asc"?d.sSortAsc:h[e]=="desc"?d.sSortDesc:c.sSortingClass);b.find("span."+d.sSortIcon).removeClass(d.sSortJUIAsc+" "+d.sSortJUIDesc+" "+d.sSortJUI+" "+d.sSortJUIAscAllowed+" "+d.sSortJUIDescAllowed).addClass(h[e]=="asc"?d.sSortJUIAsc:h[e]=="desc"?d.sSortJUIDesc:c.sSortingClassJUI)}})}}});var Vb=function(a){return"string"===typeof a?a.replace(/</g,"&lt;").replace(/>/g,"&gt;").replace(/"/g,
-"&quot;"):a};m.render={number:function(a,b,c,d,e){return{display:function(f){if("number"!==typeof f&&"string"!==typeof f)return f;var g=0>f?"-":"",h=parseFloat(f);if(isNaN(h))return Vb(f);h=h.toFixed(c);f=Math.abs(h);h=parseInt(f,10);f=c?b+(f-h).toFixed(c).substring(2):"";return g+(d||"")+h.toString().replace(/\B(?=(\d{3})+(?!\d))/g,a)+f+(e||"")}}},text:function(){return{display:Vb}}};h.extend(m.ext.internal,{_fnExternApiFunc:Lb,_fnBuildAjax:sa,_fnAjaxUpdate:kb,_fnAjaxParameters:tb,_fnAjaxUpdateDraw:ub,
-_fnAjaxDataSrc:ta,_fnAddColumn:Da,_fnColumnOptions:ja,_fnAdjustColumnSizing:Y,_fnVisibleToColumnIndex:Z,_fnColumnIndexToVisible:$,_fnVisbleColumns:aa,_fnGetColumns:la,_fnColumnTypes:Fa,_fnApplyColumnDefs:hb,_fnHungarianMap:X,_fnCamelToHungarian:I,_fnLanguageCompat:Ca,_fnBrowserDetect:fb,_fnAddData:M,_fnAddTr:ma,_fnNodeToDataIndex:function(a,b){return b._DT_RowIndex!==k?b._DT_RowIndex:null},_fnNodeToColumnIndex:function(a,b,c){return h.inArray(c,a.aoData[b].anCells)},_fnGetCellData:B,_fnSetCellData:ib,
-_fnSplitObjNotation:Ia,_fnGetObjectDataFn:Q,_fnSetObjectDataFn:R,_fnGetDataMaster:Ja,_fnClearTable:na,_fnDeleteIndex:oa,_fnInvalidate:ca,_fnGetRowElements:Ha,_fnCreateTr:Ga,_fnBuildHead:jb,_fnDrawHead:ea,_fnDraw:N,_fnReDraw:S,_fnAddOptionsHtml:mb,_fnDetectHeader:da,_fnGetUniqueThs:ra,_fnFeatureHtmlFilter:ob,_fnFilterComplete:fa,_fnFilterCustom:xb,_fnFilterColumn:wb,_fnFilter:vb,_fnFilterCreateSearch:Oa,_fnEscapeRegex:Pa,_fnFilterData:yb,_fnFeatureHtmlInfo:rb,_fnUpdateInfo:Bb,_fnInfoMacros:Cb,_fnInitialise:ga,
-_fnInitComplete:ua,_fnLengthChange:Qa,_fnFeatureHtmlLength:nb,_fnFeatureHtmlPaginate:sb,_fnPageChange:Sa,_fnFeatureHtmlProcessing:pb,_fnProcessingDisplay:C,_fnFeatureHtmlTable:qb,_fnScrollDraw:ka,_fnApplyToChildren:H,_fnCalculateColumnWidths:Ea,_fnThrottle:Na,_fnConvertToWidth:Db,_fnGetWidestNode:Eb,_fnGetMaxLenString:Fb,_fnStringToCss:v,_fnSortFlatten:V,_fnSort:lb,_fnSortAria:Hb,_fnSortListener:Ua,_fnSortAttachListener:La,_fnSortingClasses:wa,_fnSortData:Gb,_fnSaveState:xa,_fnLoadState:Ib,_fnSettingsFromNode:ya,
-_fnLog:J,_fnMap:F,_fnBindAction:Va,_fnCallbackReg:z,_fnCallbackFire:r,_fnLengthOverflow:Ra,_fnRenderer:Ma,_fnDataSource:y,_fnRowAttributes:Ka,_fnCalculateEnd:function(){}});h.fn.dataTable=m;m.$=h;h.fn.dataTableSettings=m.settings;h.fn.dataTableExt=m.ext;h.fn.DataTable=function(a){return h(this).dataTable(a).api()};h.each(m,function(a,b){h.fn.DataTable[a]=b});return h.fn.dataTable});
-
-
-/*!
- DataTables Bootstrap 3 integration
- ©2011-2015 SpryMedia Ltd - datatables.net/license
-*/
-(function(b){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(a){return b(a,window,document)}):"object"===typeof exports?module.exports=function(a,d){a||(a=window);if(!d||!d.fn.dataTable)d=require("datatables.net")(a,d).$;return b(d,a,a.document)}:b(jQuery,window,document)})(function(b,a,d,m){var f=b.fn.dataTable;b.extend(!0,f.defaults,{dom:"<'row'<'col-sm-12 col-md-6'l><'col-sm-12 col-md-6'f>><'row'<'col-sm-12'tr>><'row'<'col-sm-12 col-md-5'i><'col-sm-12 col-md-7'p>>",
-renderer:"bootstrap"});b.extend(f.ext.classes,{sWrapper:"dataTables_wrapper container-fluid dt-bootstrap4",sFilterInput:"form-control form-control-sm",sLengthSelect:"form-control form-control-sm",sProcessing:"dataTables_processing card",sPageButton:"paginate_button page-item"});f.ext.renderer.pageButton.bootstrap=function(a,h,r,s,j,n){var o=new f.Api(a),t=a.oClasses,k=a.oLanguage.oPaginate,u=a.oLanguage.oAria.paginate||{},e,g,p=0,q=function(d,f){var l,h,i,c,m=function(a){a.preventDefault();!b(a.currentTarget).hasClass("disabled")&&
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-
-
-/*!
- Buttons for DataTables 1.4.2
- ©2016-2017 SpryMedia Ltd - datatables.net/license
-*/
-(function(d){"function"===typeof define&&define.amd?define(["jquery","datatables.net"],function(n){return d(n,window,document)}):"object"===typeof exports?module.exports=function(n,o){n||(n=window);if(!o||!o.fn.dataTable)o=require("datatables.net")(n,o).$;return d(o,n,n.document)}:d(jQuery,window,document)})(function(d,n,o,l){var i=d.fn.dataTable,w=0,x=0,j=i.ext.buttons,m=function(a,b){"undefined"===typeof b&&(b={});!0===b&&(b={});d.isArray(b)&&(b={buttons:b});this.c=d.extend(!0,{},m.defaults,b);
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-b);return this},add:function(a,b){var c=this.s.buttons;if("string"===typeof b){for(var e=b.split("-"),c=this.s,d=0,h=e.length-1;d<h;d++)c=c.buttons[1*e[d]];c=c.buttons;b=1*e[e.length-1]}this._expandButton(c,a,!1,b);this._draw();return this},container:function(){return this.dom.container},disable:function(a){a=this._nodeToButton(a);d(a.node).addClass(this.c.dom.button.disabled);return this},destroy:function(){d("body").off("keyup."+this.s.namespace);var a=this.s.buttons.slice(),b,c;b=0;for(c=a.length;b<
-c;b++)this.remove(a[b].node);this.dom.container.remove();a=this.s.dt.settings()[0];b=0;for(c=a.length;b<c;b++)if(a.inst===this){a.splice(b,1);break}return this},enable:function(a,b){if(!1===b)return this.disable(a);var c=this._nodeToButton(a);d(c.node).removeClass(this.c.dom.button.disabled);return this},name:function(){return this.c.name},node:function(a){a=this._nodeToButton(a);return d(a.node)},processing:function(a,b){var c=this._nodeToButton(a);if(b===l)return d(c.node).hasClass("processing");
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-o.body){var c=String.fromCharCode(b.keyCode).toLowerCase();a.s.listenKeys.toLowerCase().indexOf(c)!==-1&&a._keypress(c,b)}})},_addKey:function(a){a.key&&(this.s.listenKeys+=d.isPlainObject(a.key)?a.key.key:a.key)},_draw:function(a,b){a||(a=this.dom.container,b=this.s.buttons);a.children().detach();for(var c=0,e=b.length;c<e;c++)a.append(b[c].inserter),a.append(" "),b[c].buttons&&b[c].buttons.length&&this._draw(b[c].collection,b[c].buttons)},_expandButton:function(a,b,c,e){for(var g=this.s.dt,h=0,
-b=!d.isArray(b)?[b]:b,f=0,r=b.length;f<r;f++){var k=this._resolveExtends(b[f]);if(k)if(d.isArray(k))this._expandButton(a,k,c,e);else{var p=this._buildButton(k,c);if(p){e!==l?(a.splice(e,0,p),e++):a.push(p);if(p.conf.buttons){var t=this.c.dom.collection;p.collection=d("<"+t.tag+"/>").addClass(t.className).attr("role","menu");p.conf._collection=p.collection;this._expandButton(p.buttons,p.conf.buttons,!0,e)}k.init&&k.init.call(g.button(p.node),g,d(p.node),k);h++}}}},_buildButton:function(a,b){var c=
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xt=(c+(n=n+Math.imul(f,$)|0)|0)+((8191&(i=(i=i+Math.imul(f,tt)|0)+Math.imul(h,$)|0))<<13)|0;c=((a=a+Math.imul(h,tt)|0)+(i>>>13)|0)+(xt>>>26)|0,xt&=67108863,n=Math.imul(T,U),i=(i=Math.imul(T,V))+Math.imul(E,U)|0,a=Math.imul(E,V),n=n+Math.imul(M,H)|0,i=(i=i+Math.imul(M,G)|0)+Math.imul(k,H)|0,a=a+Math.imul(k,G)|0,n=n+Math.imul(x,W)|0,i=(i=i+Math.imul(x,X)|0)+Math.imul(_,W)|0,a=a+Math.imul(_,X)|0,n=n+Math.imul(g,J)|0,i=(i=i+Math.imul(g,K)|0)+Math.imul(y,J)|0,a=a+Math.imul(y,K)|0,n=n+Math.imul(p,$)|0,i=(i=i+Math.imul(p,tt)|0)+Math.imul(m,$)|0,a=a+Math.imul(m,tt)|0;var 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wt=(c+(n=n+Math.imul(f,at)|0)|0)+((8191&(i=(i=i+Math.imul(f,ot)|0)+Math.imul(h,at)|0))<<13)|0;c=((a=a+Math.imul(h,ot)|0)+(i>>>13)|0)+(wt>>>26)|0,wt&=67108863,n=Math.imul(z,U),i=(i=Math.imul(z,V))+Math.imul(O,U)|0,a=Math.imul(O,V),n=n+Math.imul(L,H)|0,i=(i=i+Math.imul(L,G)|0)+Math.imul(C,H)|0,a=a+Math.imul(C,G)|0,n=n+Math.imul(T,W)|0,i=(i=i+Math.imul(T,X)|0)+Math.imul(E,W)|0,a=a+Math.imul(E,X)|0,n=n+Math.imul(M,J)|0,i=(i=i+Math.imul(M,K)|0)+Math.imul(k,J)|0,a=a+Math.imul(k,K)|0,n=n+Math.imul(x,$)|0,i=(i=i+Math.imul(x,tt)|0)+Math.imul(_,$)|0,a=a+Math.imul(_,tt)|0,n=n+Math.imul(g,rt)|0,i=(i=i+Math.imul(g,nt)|0)+Math.imul(y,rt)|0,a=a+Math.imul(y,nt)|0,n=n+Math.imul(p,at)|0,i=(i=i+Math.imul(p,ot)|0)+Math.imul(m,at)|0,a=a+Math.imul(m,ot)|0;var 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kt=(c+(n=n+Math.imul(f,ft)|0)|0)+((8191&(i=(i=i+Math.imul(f,ht)|0)+Math.imul(h,ft)|0))<<13)|0;c=((a=a+Math.imul(h,ht)|0)+(i>>>13)|0)+(kt>>>26)|0,kt&=67108863,n=Math.imul(F,U),i=(i=Math.imul(F,V))+Math.imul(j,U)|0,a=Math.imul(j,V),n=n+Math.imul(I,H)|0,i=(i=i+Math.imul(I,G)|0)+Math.imul(R,H)|0,a=a+Math.imul(R,G)|0,n=n+Math.imul(z,W)|0,i=(i=i+Math.imul(z,X)|0)+Math.imul(O,W)|0,a=a+Math.imul(O,X)|0,n=n+Math.imul(L,J)|0,i=(i=i+Math.imul(L,K)|0)+Math.imul(C,J)|0,a=a+Math.imul(C,K)|0,n=n+Math.imul(T,$)|0,i=(i=i+Math.imul(T,tt)|0)+Math.imul(E,$)|0,a=a+Math.imul(E,tt)|0,n=n+Math.imul(M,rt)|0,i=(i=i+Math.imul(M,nt)|0)+Math.imul(k,rt)|0,a=a+Math.imul(k,nt)|0,n=n+Math.imul(x,at)|0,i=(i=i+Math.imul(x,ot)|0)+Math.imul(_,at)|0,a=a+Math.imul(_,ot)|0,n=n+Math.imul(g,lt)|0,i=(i=i+Math.imul(g,ct)|0)+Math.imul(y,lt)|0,a=a+Math.imul(y,ct)|0,n=n+Math.imul(p,ft)|0,i=(i=i+Math.imul(p,ht)|0)+Math.imul(m,ft)|0,a=a+Math.imul(m,ht)|0;var At=(c+(n=n+Math.imul(f,pt)|0)|0)+((8191&(i=(i=i+Math.imul(f,mt)|0)+Math.imul(h,pt)|0))<<13)|0;c=((a=a+Math.imul(h,mt)|0)+(i>>>13)|0)+(At>>>26)|0,At&=67108863,n=Math.imul(F,H),i=(i=Math.imul(F,G))+Math.imul(j,H)|0,a=Math.imul(j,G),n=n+Math.imul(I,W)|0,i=(i=i+Math.imul(I,X)|0)+Math.imul(R,W)|0,a=a+Math.imul(R,X)|0,n=n+Math.imul(z,J)|0,i=(i=i+Math.imul(z,K)|0)+Math.imul(O,J)|0,a=a+Math.imul(O,K)|0,n=n+Math.imul(L,$)|0,i=(i=i+Math.imul(L,tt)|0)+Math.imul(C,$)|0,a=a+Math.imul(C,tt)|0,n=n+Math.imul(T,rt)|0,i=(i=i+Math.imul(T,nt)|0)+Math.imul(E,rt)|0,a=a+Math.imul(E,nt)|0,n=n+Math.imul(M,at)|0,i=(i=i+Math.imul(M,ot)|0)+Math.imul(k,at)|0,a=a+Math.imul(k,ot)|0,n=n+Math.imul(x,lt)|0,i=(i=i+Math.imul(x,ct)|0)+Math.imul(_,lt)|0,a=a+Math.imul(_,ct)|0,n=n+Math.imul(g,ft)|0,i=(i=i+Math.imul(g,ht)|0)+Math.imul(y,ft)|0,a=a+Math.imul(y,ht)|0;var Tt=(c+(n=n+Math.imul(p,pt)|0)|0)+((8191&(i=(i=i+Math.imul(p,mt)|0)+Math.imul(m,pt)|0))<<13)|0;c=((a=a+Math.imul(m,mt)|0)+(i>>>13)|0)+(Tt>>>26)|0,Tt&=67108863,n=Math.imul(F,W),i=(i=Math.imul(F,X))+Math.imul(j,W)|0,a=Math.imul(j,X),n=n+Math.imul(I,J)|0,i=(i=i+Math.imul(I,K)|0)+Math.imul(R,J)|0,a=a+Math.imul(R,K)|0,n=n+Math.imul(z,$)|0,i=(i=i+Math.imul(z,tt)|0)+Math.imul(O,$)|0,a=a+Math.imul(O,tt)|0,n=n+Math.imul(L,rt)|0,i=(i=i+Math.imul(L,nt)|0)+Math.imul(C,rt)|0,a=a+Math.imul(C,nt)|0,n=n+Math.imul(T,at)|0,i=(i=i+Math.imul(T,ot)|0)+Math.imul(E,at)|0,a=a+Math.imul(E,ot)|0,n=n+Math.imul(M,lt)|0,i=(i=i+Math.imul(M,ct)|0)+Math.imul(k,lt)|0,a=a+Math.imul(k,ct)|0,n=n+Math.imul(x,ft)|0,i=(i=i+Math.imul(x,ht)|0)+Math.imul(_,ft)|0,a=a+Math.imul(_,ht)|0;var Et=(c+(n=n+Math.imul(g,pt)|0)|0)+((8191&(i=(i=i+Math.imul(g,mt)|0)+Math.imul(y,pt)|0))<<13)|0;c=((a=a+Math.imul(y,mt)|0)+(i>>>13)|0)+(Et>>>26)|0,Et&=67108863,n=Math.imul(F,J),i=(i=Math.imul(F,K))+Math.imul(j,J)|0,a=Math.imul(j,K),n=n+Math.imul(I,$)|0,i=(i=i+Math.imul(I,tt)|0)+Math.imul(R,$)|0,a=a+Math.imul(R,tt)|0,n=n+Math.imul(z,rt)|0,i=(i=i+Math.imul(z,nt)|0)+Math.imul(O,rt)|0,a=a+Math.imul(O,nt)|0,n=n+Math.imul(L,at)|0,i=(i=i+Math.imul(L,ot)|0)+Math.imul(C,at)|0,a=a+Math.imul(C,ot)|0,n=n+Math.imul(T,lt)|0,i=(i=i+Math.imul(T,ct)|0)+Math.imul(E,lt)|0,a=a+Math.imul(E,ct)|0,n=n+Math.imul(M,ft)|0,i=(i=i+Math.imul(M,ht)|0)+Math.imul(k,ft)|0,a=a+Math.imul(k,ht)|0;var St=(c+(n=n+Math.imul(x,pt)|0)|0)+((8191&(i=(i=i+Math.imul(x,mt)|0)+Math.imul(_,pt)|0))<<13)|0;c=((a=a+Math.imul(_,mt)|0)+(i>>>13)|0)+(St>>>26)|0,St&=67108863,n=Math.imul(F,$),i=(i=Math.imul(F,tt))+Math.imul(j,$)|0,a=Math.imul(j,tt),n=n+Math.imul(I,rt)|0,i=(i=i+Math.imul(I,nt)|0)+Math.imul(R,rt)|0,a=a+Math.imul(R,nt)|0,n=n+Math.imul(z,at)|0,i=(i=i+Math.imul(z,ot)|0)+Math.imul(O,at)|0,a=a+Math.imul(O,ot)|0,n=n+Math.imul(L,lt)|0,i=(i=i+Math.imul(L,ct)|0)+Math.imul(C,lt)|0,a=a+Math.imul(C,ct)|0,n=n+Math.imul(T,ft)|0,i=(i=i+Math.imul(T,ht)|0)+Math.imul(E,ft)|0,a=a+Math.imul(E,ht)|0;var Lt=(c+(n=n+Math.imul(M,pt)|0)|0)+((8191&(i=(i=i+Math.imul(M,mt)|0)+Math.imul(k,pt)|0))<<13)|0;c=((a=a+Math.imul(k,mt)|0)+(i>>>13)|0)+(Lt>>>26)|0,Lt&=67108863,n=Math.imul(F,rt),i=(i=Math.imul(F,nt))+Math.imul(j,rt)|0,a=Math.imul(j,nt),n=n+Math.imul(I,at)|0,i=(i=i+Math.imul(I,ot)|0)+Math.imul(R,at)|0,a=a+Math.imul(R,ot)|0,n=n+Math.imul(z,lt)|0,i=(i=i+Math.imul(z,ct)|0)+Math.imul(O,lt)|0,a=a+Math.imul(O,ct)|0,n=n+Math.imul(L,ft)|0,i=(i=i+Math.imul(L,ht)|0)+Math.imul(C,ft)|0,a=a+Math.imul(C,ht)|0;var Ct=(c+(n=n+Math.imul(T,pt)|0)|0)+((8191&(i=(i=i+Math.imul(T,mt)|0)+Math.imul(E,pt)|0))<<13)|0;c=((a=a+Math.imul(E,mt)|0)+(i>>>13)|0)+(Ct>>>26)|0,Ct&=67108863,n=Math.imul(F,at),i=(i=Math.imul(F,ot))+Math.imul(j,at)|0,a=Math.imul(j,ot),n=n+Math.imul(I,lt)|0,i=(i=i+Math.imul(I,ct)|0)+Math.imul(R,lt)|0,a=a+Math.imul(R,ct)|0,n=n+Math.imul(z,ft)|0,i=(i=i+Math.imul(z,ht)|0)+Math.imul(O,ft)|0,a=a+Math.imul(O,ht)|0;var Pt=(c+(n=n+Math.imul(L,pt)|0)|0)+((8191&(i=(i=i+Math.imul(L,mt)|0)+Math.imul(C,pt)|0))<<13)|0;c=((a=a+Math.imul(C,mt)|0)+(i>>>13)|0)+(Pt>>>26)|0,Pt&=67108863,n=Math.imul(F,lt),i=(i=Math.imul(F,ct))+Math.imul(j,lt)|0,a=Math.imul(j,ct),n=n+Math.imul(I,ft)|0,i=(i=i+Math.imul(I,ht)|0)+Math.imul(R,ft)|0,a=a+Math.imul(R,ht)|0;var zt=(c+(n=n+Math.imul(z,pt)|0)|0)+((8191&(i=(i=i+Math.imul(z,mt)|0)+Math.imul(O,pt)|0))<<13)|0;c=((a=a+Math.imul(O,mt)|0)+(i>>>13)|0)+(zt>>>26)|0,zt&=67108863,n=Math.imul(F,ft),i=(i=Math.imul(F,ht))+Math.imul(j,ft)|0,a=Math.imul(j,ht);var Ot=(c+(n=n+Math.imul(I,pt)|0)|0)+((8191&(i=(i=i+Math.imul(I,mt)|0)+Math.imul(R,pt)|0))<<13)|0;c=((a=a+Math.imul(R,mt)|0)+(i>>>13)|0)+(Ot>>>26)|0,Ot&=67108863;var Dt=(c+(n=Math.imul(F,pt))|0)+((8191&(i=(i=Math.imul(F,mt))+Math.imul(j,pt)|0))<<13)|0;return c=((a=Math.imul(j,mt))+(i>>>13)|0)+(Dt>>>26)|0,Dt&=67108863,l[0]=vt,l[1]=gt,l[2]=yt,l[3]=bt,l[4]=xt,l[5]=_t,l[6]=wt,l[7]=Mt,l[8]=kt,l[9]=At,l[10]=Tt,l[11]=Et,l[12]=St,l[13]=Lt,l[14]=Ct,l[15]=Pt,l[16]=zt,l[17]=Ot,l[18]=Dt,0!==c&&(l[19]=c,r.length++),r};function p(t,e,r){return(new m).mulp(t,e,r)}function m(t,e){this.x=t,this.y=e}Math.imul||(d=h),a.prototype.mulTo=function(t,e){var r=this.length+t.length;return 10===this.length&&10===t.length?d(this,t,e):r<63?h(this,t,e):r<1024?function(t,e,r){r.negative=e.negative^t.negative,r.length=t.length+e.length;for(var n=0,i=0,a=0;a<r.length-1;a++){var o=i;i=0;for(var s=67108863&n,l=Math.min(a,e.length-1),c=Math.max(0,a-t.length+1);c<=l;c++){var u=a-c,f=(0|t.words[u])*(0|e.words[c]),h=67108863&f;s=67108863&(h=h+s|0),i+=(o=(o=o+(f/67108864|0)|0)+(h>>>26)|0)>>>26,o&=67108863}r.words[a]=s,n=o,o=i}return 0!==n?r.words[a]=n:r.length--,r.strip()}(this,t,e):p(this,t,e)},m.prototype.makeRBT=function(t){for(var e=new Array(t),r=a.prototype._countBits(t)-1,n=0;n<t;n++)e[n]=this.revBin(n,r,t);return e},m.prototype.revBin=function(t,e,r){if(0===t||t===r-1)return t;for(var n=0,i=0;i<e;i++)n|=(1&t)<<e-i-1,t>>=1;return n},m.prototype.permute=function(t,e,r,n,i,a){for(var o=0;o<a;o++)n[o]=e[t[o]],i[o]=r[t[o]]},m.prototype.transform=function(t,e,r,n,i,a){this.permute(a,t,e,r,n,i);for(var o=1;o<i;o<<=1)for(var s=o<<1,l=Math.cos(2*Math.PI/s),c=Math.sin(2*Math.PI/s),u=0;u<i;u+=s)for(var f=l,h=c,d=0;d<o;d++){var p=r[u+d],m=n[u+d],v=r[u+d+o],g=n[u+d+o],y=f*v-h*g;g=f*g+h*v,v=y,r[u+d]=p+v,n[u+d]=m+g,r[u+d+o]=p-v,n[u+d+o]=m-g,d!==s&&(y=l*f-c*h,h=l*h+c*f,f=y)}},m.prototype.guessLen13b=function(t,e){var r=1|Math.max(e,t),n=1&r,i=0;for(r=r/2|0;r;r>>>=1)i++;return 1<<i+1+n},m.prototype.conjugate=function(t,e,r){if(!(r<=1))for(var n=0;n<r/2;n++){var i=t[n];t[n]=t[r-n-1],t[r-n-1]=i,i=e[n],e[n]=-e[r-n-1],e[r-n-1]=-i}},m.prototype.normalize13b=function(t,e){for(var r=0,n=0;n<e/2;n++){var i=8192*Math.round(t[2*n+1]/e)+Math.round(t[2*n]/e)+r;t[n]=67108863&i,r=i<67108864?0:i/67108864|0}return t},m.prototype.convert13b=function(t,e,r,i){for(var a=0,o=0;o<e;o++)a+=0|t[o],r[2*o]=8191&a,a>>>=13,r[2*o+1]=8191&a,a>>>=13;for(o=2*e;o<i;++o)r[o]=0;n(0===a),n(0==(-8192&a))},m.prototype.stub=function(t){for(var e=new Array(t),r=0;r<t;r++)e[r]=0;return e},m.prototype.mulp=function(t,e,r){var n=2*this.guessLen13b(t.length,e.length),i=this.makeRBT(n),a=this.stub(n),o=new Array(n),s=new Array(n),l=new Array(n),c=new Array(n),u=new Array(n),f=new Array(n),h=r.words;h.length=n,this.convert13b(t.words,t.length,o,n),this.convert13b(e.words,e.length,c,n),this.transform(o,a,s,l,n,i),this.transform(c,a,u,f,n,i);for(var d=0;d<n;d++){var p=s[d]*u[d]-l[d]*f[d];l[d]=s[d]*f[d]+l[d]*u[d],s[d]=p}return this.conjugate(s,l,n),this.transform(s,l,h,a,n,i),this.conjugate(h,a,n),this.normalize13b(h,n),r.negative=t.negative^e.negative,r.length=t.length+e.length,r.strip()},a.prototype.mul=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),this.mulTo(t,e)},a.prototype.mulf=function(t){var e=new a(null);return e.words=new Array(this.length+t.length),p(this,t,e)},a.prototype.imul=function(t){return this.clone().mulTo(t,this)},a.prototype.imuln=function(t){n("number"==typeof t),n(t<67108864);for(var e=0,r=0;r<this.length;r++){var i=(0|this.words[r])*t,a=(67108863&i)+(67108863&e);e>>=26,e+=i/67108864|0,e+=a>>>26,this.words[r]=67108863&a}return 0!==e&&(this.words[r]=e,this.length++),this},a.prototype.muln=function(t){return this.clone().imuln(t)},a.prototype.sqr=function(){return this.mul(this)},a.prototype.isqr=function(){return this.imul(this.clone())},a.prototype.pow=function(t){var e=function(t){for(var e=new Array(t.bitLength()),r=0;r<e.length;r++){var n=r/26|0,i=r%26;e[r]=(t.words[n]&1<<i)>>>i}return e}(t);if(0===e.length)return new a(1);for(var r=this,n=0;n<e.length&&0===e[n];n++,r=r.sqr());if(++n<e.length)for(var i=r.sqr();n<e.length;n++,i=i.sqr())0!==e[n]&&(r=r.mul(i));return r},a.prototype.iushln=function(t){n("number"==typeof t&&t>=0);var e,r=t%26,i=(t-r)/26,a=67108863>>>26-r<<26-r;if(0!==r){var o=0;for(e=0;e<this.length;e++){var s=this.words[e]&a,l=(0|this.words[e])-s<<r;this.words[e]=l|o,o=s>>>26-r}o&&(this.words[e]=o,this.length++)}if(0!==i){for(e=this.length-1;e>=0;e--)this.words[e+i]=this.words[e];for(e=0;e<i;e++)this.words[e]=0;this.length+=i}return this.strip()},a.prototype.ishln=function(t){return n(0===this.negative),this.iushln(t)},a.prototype.iushrn=function(t,e,r){var i;n("number"==typeof t&&t>=0),i=e?(e-e%26)/26:0;var a=t%26,o=Math.min((t-a)/26,this.length),s=67108863^67108863>>>a<<a,l=r;if(i-=o,i=Math.max(0,i),l){for(var c=0;c<o;c++)l.words[c]=this.words[c];l.length=o}if(0===o);else if(this.length>o)for(this.length-=o,c=0;c<this.length;c++)this.words[c]=this.words[c+o];else this.words[0]=0,this.length=1;var u=0;for(c=this.length-1;c>=0&&(0!==u||c>=i);c--){var f=0|this.words[c];this.words[c]=u<<26-a|f>>>a,u=f&s}return l&&0!==u&&(l.words[l.length++]=u),0===this.length&&(this.words[0]=0,this.length=1),this.strip()},a.prototype.ishrn=function(t,e,r){return n(0===this.negative),this.iushrn(t,e,r)},a.prototype.shln=function(t){return this.clone().ishln(t)},a.prototype.ushln=function(t){return this.clone().iushln(t)},a.prototype.shrn=function(t){return this.clone().ishrn(t)},a.prototype.ushrn=function(t){return this.clone().iushrn(t)},a.prototype.testn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26,i=1<<e;return!(this.length<=r)&&!!(this.words[r]&i)},a.prototype.imaskn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26;if(n(0===this.negative,"imaskn works only with positive numbers"),this.length<=r)return this;if(0!==e&&r++,this.length=Math.min(r,this.length),0!==e){var i=67108863^67108863>>>e<<e;this.words[this.length-1]&=i}return this.strip()},a.prototype.maskn=function(t){return this.clone().imaskn(t)},a.prototype.iaddn=function(t){return n("number"==typeof t),n(t<67108864),t<0?this.isubn(-t):0!==this.negative?1===this.length&&(0|this.words[0])<t?(this.words[0]=t-(0|this.words[0]),this.negative=0,this):(this.negative=0,this.isubn(t),this.negative=1,this):this._iaddn(t)},a.prototype._iaddn=function(t){this.words[0]+=t;for(var e=0;e<this.length&&this.words[e]>=67108864;e++)this.words[e]-=67108864,e===this.length-1?this.words[e+1]=1:this.words[e+1]++;return this.length=Math.max(this.length,e+1),this},a.prototype.isubn=function(t){if(n("number"==typeof t),n(t<67108864),t<0)return this.iaddn(-t);if(0!==this.negative)return this.negative=0,this.iaddn(t),this.negative=1,this;if(this.words[0]-=t,1===this.length&&this.words[0]<0)this.words[0]=-this.words[0],this.negative=1;else for(var e=0;e<this.length&&this.words[e]<0;e++)this.words[e]+=67108864,this.words[e+1]-=1;return this.strip()},a.prototype.addn=function(t){return this.clone().iaddn(t)},a.prototype.subn=function(t){return this.clone().isubn(t)},a.prototype.iabs=function(){return this.negative=0,this},a.prototype.abs=function(){return this.clone().iabs()},a.prototype._ishlnsubmul=function(t,e,r){var i,a,o=t.length+r;this._expand(o);var s=0;for(i=0;i<t.length;i++){a=(0|this.words[i+r])+s;var l=(0|t.words[i])*e;s=((a-=67108863&l)>>26)-(l/67108864|0),this.words[i+r]=67108863&a}for(;i<this.length-r;i++)s=(a=(0|this.words[i+r])+s)>>26,this.words[i+r]=67108863&a;if(0===s)return this.strip();for(n(-1===s),s=0,i=0;i<this.length;i++)s=(a=-(0|this.words[i])+s)>>26,this.words[i]=67108863&a;return this.negative=1,this.strip()},a.prototype._wordDiv=function(t,e){var r=(this.length,t.length),n=this.clone(),i=t,o=0|i.words[i.length-1];0!==(r=26-this._countBits(o))&&(i=i.ushln(r),n.iushln(r),o=0|i.words[i.length-1]);var s,l=n.length-i.length;if("mod"!==e){(s=new a(null)).length=l+1,s.words=new Array(s.length);for(var c=0;c<s.length;c++)s.words[c]=0}var u=n.clone()._ishlnsubmul(i,1,l);0===u.negative&&(n=u,s&&(s.words[l]=1));for(var f=l-1;f>=0;f--){var h=67108864*(0|n.words[i.length+f])+(0|n.words[i.length+f-1]);for(h=Math.min(h/o|0,67108863),n._ishlnsubmul(i,h,f);0!==n.negative;)h--,n.negative=0,n._ishlnsubmul(i,1,f),n.isZero()||(n.negative^=1);s&&(s.words[f]=h)}return s&&s.strip(),n.strip(),"div"!==e&&0!==r&&n.iushrn(r),{div:s||null,mod:n}},a.prototype.divmod=function(t,e,r){return n(!t.isZero()),this.isZero()?{div:new a(0),mod:new a(0)}:0!==this.negative&&0===t.negative?(s=this.neg().divmod(t,e),"mod"!==e&&(i=s.div.neg()),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.iadd(t)),{div:i,mod:o}):0===this.negative&&0!==t.negative?(s=this.divmod(t.neg(),e),"mod"!==e&&(i=s.div.neg()),{div:i,mod:s.mod}):0!=(this.negative&t.negative)?(s=this.neg().divmod(t.neg(),e),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.isub(t)),{div:s.div,mod:o}):t.length>this.length||this.cmp(t)<0?{div:new a(0),mod:this}:1===t.length?"div"===e?{div:this.divn(t.words[0]),mod:null}:"mod"===e?{div:null,mod:new a(this.modn(t.words[0]))}:{div:this.divn(t.words[0]),mod:new a(this.modn(t.words[0]))}:this._wordDiv(t,e);var i,o,s},a.prototype.div=function(t){return this.divmod(t,"div",!1).div},a.prototype.mod=function(t){return this.divmod(t,"mod",!1).mod},a.prototype.umod=function(t){return this.divmod(t,"mod",!0).mod},a.prototype.divRound=function(t){var e=this.divmod(t);if(e.mod.isZero())return e.div;var r=0!==e.div.negative?e.mod.isub(t):e.mod,n=t.ushrn(1),i=t.andln(1),a=r.cmp(n);return a<0||1===i&&0===a?e.div:0!==e.div.negative?e.div.isubn(1):e.div.iaddn(1)},a.prototype.modn=function(t){n(t<=67108863);for(var e=(1<<26)%t,r=0,i=this.length-1;i>=0;i--)r=(e*r+(0|this.words[i]))%t;return r},a.prototype.idivn=function(t){n(t<=67108863);for(var e=0,r=this.length-1;r>=0;r--){var i=(0|this.words[r])+67108864*e;this.words[r]=i/t|0,e=i%t}return this.strip()},a.prototype.divn=function(t){return this.clone().idivn(t)},a.prototype.egcd=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i=new a(1),o=new a(0),s=new a(0),l=new a(1),c=0;e.isEven()&&r.isEven();)e.iushrn(1),r.iushrn(1),++c;for(var u=r.clone(),f=e.clone();!e.isZero();){for(var h=0,d=1;0==(e.words[0]&d)&&h<26;++h,d<<=1);if(h>0)for(e.iushrn(h);h-- >0;)(i.isOdd()||o.isOdd())&&(i.iadd(u),o.isub(f)),i.iushrn(1),o.iushrn(1);for(var p=0,m=1;0==(r.words[0]&m)&&p<26;++p,m<<=1);if(p>0)for(r.iushrn(p);p-- >0;)(s.isOdd()||l.isOdd())&&(s.iadd(u),l.isub(f)),s.iushrn(1),l.iushrn(1);e.cmp(r)>=0?(e.isub(r),i.isub(s),o.isub(l)):(r.isub(e),s.isub(i),l.isub(o))}return{a:s,b:l,gcd:r.iushln(c)}},a.prototype._invmp=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i,o=new a(1),s=new a(0),l=r.clone();e.cmpn(1)>0&&r.cmpn(1)>0;){for(var c=0,u=1;0==(e.words[0]&u)&&c<26;++c,u<<=1);if(c>0)for(e.iushrn(c);c-- >0;)o.isOdd()&&o.iadd(l),o.iushrn(1);for(var f=0,h=1;0==(r.words[0]&h)&&f<26;++f,h<<=1);if(f>0)for(r.iushrn(f);f-- >0;)s.isOdd()&&s.iadd(l),s.iushrn(1);e.cmp(r)>=0?(e.isub(r),o.isub(s)):(r.isub(e),s.isub(o))}return(i=0===e.cmpn(1)?o:s).cmpn(0)<0&&i.iadd(t),i},a.prototype.gcd=function(t){if(this.isZero())return t.abs();if(t.isZero())return this.abs();var e=this.clone(),r=t.clone();e.negative=0,r.negative=0;for(var n=0;e.isEven()&&r.isEven();n++)e.iushrn(1),r.iushrn(1);for(;;){for(;e.isEven();)e.iushrn(1);for(;r.isEven();)r.iushrn(1);var i=e.cmp(r);if(i<0){var a=e;e=r,r=a}else if(0===i||0===r.cmpn(1))break;e.isub(r)}return r.iushln(n)},a.prototype.invm=function(t){return this.egcd(t).a.umod(t)},a.prototype.isEven=function(){return 0==(1&this.words[0])},a.prototype.isOdd=function(){return 1==(1&this.words[0])},a.prototype.andln=function(t){return this.words[0]&t},a.prototype.bincn=function(t){n("number"==typeof t);var e=t%26,r=(t-e)/26,i=1<<e;if(this.length<=r)return this._expand(r+1),this.words[r]|=i,this;for(var a=i,o=r;0!==a&&o<this.length;o++){var s=0|this.words[o];a=(s+=a)>>>26,s&=67108863,this.words[o]=s}return 0!==a&&(this.words[o]=a,this.length++),this},a.prototype.isZero=function(){return 1===this.length&&0===this.words[0]},a.prototype.cmpn=function(t){var e,r=t<0;if(0!==this.negative&&!r)return-1;if(0===this.negative&&r)return 1;if(this.strip(),this.length>1)e=1;else{r&&(t=-t),n(t<=67108863,"Number is too big");var i=0|this.words[0];e=i===t?0:i<t?-1:1}return 0!==this.negative?0|-e:e},a.prototype.cmp=function(t){if(0!==this.negative&&0===t.negative)return-1;if(0===this.negative&&0!==t.negative)return 1;var e=this.ucmp(t);return 0!==this.negative?0|-e:e},a.prototype.ucmp=function(t){if(this.length>t.length)return 1;if(this.length<t.length)return-1;for(var e=0,r=this.length-1;r>=0;r--){var n=0|this.words[r],i=0|t.words[r];if(n!==i){n<i?e=-1:n>i&&(e=1);break}}return e},a.prototype.gtn=function(t){return 1===this.cmpn(t)},a.prototype.gt=function(t){return 1===this.cmp(t)},a.prototype.gten=function(t){return this.cmpn(t)>=0},a.prototype.gte=function(t){return this.cmp(t)>=0},a.prototype.ltn=function(t){return-1===this.cmpn(t)},a.prototype.lt=function(t){return-1===this.cmp(t)},a.prototype.lten=function(t){return this.cmpn(t)<=0},a.prototype.lte=function(t){return this.cmp(t)<=0},a.prototype.eqn=function(t){return 0===this.cmpn(t)},a.prototype.eq=function(t){return 0===this.cmp(t)},a.red=function(t){return new w(t)},a.prototype.toRed=function(t){return n(!this.red,"Already a number in reduction context"),n(0===this.negative,"red works only with positives"),t.convertTo(this)._forceRed(t)},a.prototype.fromRed=function(){return n(this.red,"fromRed works only with numbers in reduction context"),this.red.convertFrom(this)},a.prototype._forceRed=function(t){return this.red=t,this},a.prototype.forceRed=function(t){return n(!this.red,"Already a number in reduction context"),this._forceRed(t)},a.prototype.redAdd=function(t){return n(this.red,"redAdd works only with red numbers"),this.red.add(this,t)},a.prototype.redIAdd=function(t){return n(this.red,"redIAdd works only with red numbers"),this.red.iadd(this,t)},a.prototype.redSub=function(t){return n(this.red,"redSub works only with red numbers"),this.red.sub(this,t)},a.prototype.redISub=function(t){return n(this.red,"redISub works only with red numbers"),this.red.isub(this,t)},a.prototype.redShl=function(t){return n(this.red,"redShl works only with red numbers"),this.red.shl(this,t)},a.prototype.redMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.mul(this,t)},a.prototype.redIMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.imul(this,t)},a.prototype.redSqr=function(){return n(this.red,"redSqr works only with red numbers"),this.red._verify1(this),this.red.sqr(this)},a.prototype.redISqr=function(){return n(this.red,"redISqr works only with red numbers"),this.red._verify1(this),this.red.isqr(this)},a.prototype.redSqrt=function(){return n(this.red,"redSqrt works only with red numbers"),this.red._verify1(this),this.red.sqrt(this)},a.prototype.redInvm=function(){return n(this.red,"redInvm works only with red numbers"),this.red._verify1(this),this.red.invm(this)},a.prototype.redNeg=function(){return n(this.red,"redNeg works only with red numbers"),this.red._verify1(this),this.red.neg(this)},a.prototype.redPow=function(t){return n(this.red&&!t.red,"redPow(normalNum)"),this.red._verify1(this),this.red.pow(this,t)};var v={k256:null,p224:null,p192:null,p25519:null};function g(t,e){this.name=t,this.p=new a(e,16),this.n=this.p.bitLength(),this.k=new a(1).iushln(this.n).isub(this.p),this.tmp=this._tmp()}function y(){g.call(this,"k256","ffffffff ffffffff ffffffff ffffffff ffffffff ffffffff fffffffe fffffc2f")}function b(){g.call(this,"p224","ffffffff ffffffff ffffffff ffffffff 00000000 00000000 00000001")}function x(){g.call(this,"p192","ffffffff ffffffff ffffffff fffffffe ffffffff ffffffff")}function _(){g.call(this,"25519","7fffffffffffffff ffffffffffffffff ffffffffffffffff ffffffffffffffed")}function w(t){if("string"==typeof t){var e=a._prime(t);this.m=e.p,this.prime=e}else n(t.gtn(1),"modulus must be greater than 1"),this.m=t,this.prime=null}function M(t){w.call(this,t),this.shift=this.m.bitLength(),this.shift%26!=0&&(this.shift+=26-this.shift%26),this.r=new a(1).iushln(this.shift),this.r2=this.imod(this.r.sqr()),this.rinv=this.r._invmp(this.m),this.minv=this.rinv.mul(this.r).isubn(1).div(this.m),this.minv=this.minv.umod(this.r),this.minv=this.r.sub(this.minv)}g.prototype._tmp=function(){var t=new a(null);return t.words=new Array(Math.ceil(this.n/13)),t},g.prototype.ireduce=function(t){var e,r=t;do{this.split(r,this.tmp),e=(r=(r=this.imulK(r)).iadd(this.tmp)).bitLength()}while(e>this.n);var n=e<this.n?-1:r.ucmp(this.p);return 0===n?(r.words[0]=0,r.length=1):n>0?r.isub(this.p):r.strip(),r},g.prototype.split=function(t,e){t.iushrn(this.n,0,e)},g.prototype.imulK=function(t){return t.imul(this.k)},i(y,g),y.prototype.split=function(t,e){for(var r=Math.min(t.length,9),n=0;n<r;n++)e.words[n]=t.words[n];if(e.length=r,t.length<=9)return t.words[0]=0,void(t.length=1);var i=t.words[9];for(e.words[e.length++]=4194303&i,n=10;n<t.length;n++){var a=0|t.words[n];t.words[n-10]=(4194303&a)<<4|i>>>22,i=a}i>>>=22,t.words[n-10]=i,0===i&&t.length>10?t.length-=10:t.length-=9},y.prototype.imulK=function(t){t.words[t.length]=0,t.words[t.length+1]=0,t.length+=2;for(var e=0,r=0;r<t.length;r++){var n=0|t.words[r];e+=977*n,t.words[r]=67108863&e,e=64*n+(e/67108864|0)}return 0===t.words[t.length-1]&&(t.length--,0===t.words[t.length-1]&&t.length--),t},i(b,g),i(x,g),i(_,g),_.prototype.imulK=function(t){for(var e=0,r=0;r<t.length;r++){var n=19*(0|t.words[r])+e,i=67108863&n;n>>>=26,t.words[r]=i,e=n}return 0!==e&&(t.words[t.length++]=e),t},a._prime=function(t){if(v[t])return v[t];var e;if("k256"===t)e=new y;else if("p224"===t)e=new b;else if("p192"===t)e=new x;else{if("p25519"!==t)throw new Error("Unknown prime "+t);e=new _}return v[t]=e,e},w.prototype._verify1=function(t){n(0===t.negative,"red works only with positives"),n(t.red,"red works only with red numbers")},w.prototype._verify2=function(t,e){n(0==(t.negative|e.negative),"red works only with positives"),n(t.red&&t.red===e.red,"red works only with red numbers")},w.prototype.imod=function(t){return this.prime?this.prime.ireduce(t)._forceRed(this):t.umod(this.m)._forceRed(this)},w.prototype.neg=function(t){return t.isZero()?t.clone():this.m.sub(t)._forceRed(this)},w.prototype.add=function(t,e){this._verify2(t,e);var r=t.add(e);return r.cmp(this.m)>=0&&r.isub(this.m),r._forceRed(this)},w.prototype.iadd=function(t,e){this._verify2(t,e);var r=t.iadd(e);return r.cmp(this.m)>=0&&r.isub(this.m),r},w.prototype.sub=function(t,e){this._verify2(t,e);var r=t.sub(e);return r.cmpn(0)<0&&r.iadd(this.m),r._forceRed(this)},w.prototype.isub=function(t,e){this._verify2(t,e);var r=t.isub(e);return r.cmpn(0)<0&&r.iadd(this.m),r},w.prototype.shl=function(t,e){return this._verify1(t),this.imod(t.ushln(e))},w.prototype.imul=function(t,e){return this._verify2(t,e),this.imod(t.imul(e))},w.prototype.mul=function(t,e){return this._verify2(t,e),this.imod(t.mul(e))},w.prototype.isqr=function(t){return this.imul(t,t.clone())},w.prototype.sqr=function(t){return this.mul(t,t)},w.prototype.sqrt=function(t){if(t.isZero())return t.clone();var e=this.m.andln(3);if(n(e%2==1),3===e){var r=this.m.add(new a(1)).iushrn(2);return this.pow(t,r)}for(var i=this.m.subn(1),o=0;!i.isZero()&&0===i.andln(1);)o++,i.iushrn(1);n(!i.isZero());var s=new a(1).toRed(this),l=s.redNeg(),c=this.m.subn(1).iushrn(1),u=this.m.bitLength();for(u=new a(2*u*u).toRed(this);0!==this.pow(u,c).cmp(l);)u.redIAdd(l);for(var f=this.pow(u,i),h=this.pow(t,i.addn(1).iushrn(1)),d=this.pow(t,i),p=o;0!==d.cmp(s);){for(var m=d,v=0;0!==m.cmp(s);v++)m=m.redSqr();n(v<p);var g=this.pow(f,new a(1).iushln(p-v-1));h=h.redMul(g),f=g.redSqr(),d=d.redMul(f),p=v}return h},w.prototype.invm=function(t){var e=t._invmp(this.m);return 0!==e.negative?(e.negative=0,this.imod(e).redNeg()):this.imod(e)},w.prototype.pow=function(t,e){if(e.isZero())return new a(1).toRed(this);if(0===e.cmpn(1))return t.clone();var r=new Array(16);r[0]=new a(1).toRed(this),r[1]=t;for(var n=2;n<r.length;n++)r[n]=this.mul(r[n-1],t);var i=r[0],o=0,s=0,l=e.bitLength()%26;for(0===l&&(l=26),n=e.length-1;n>=0;n--){for(var c=e.words[n],u=l-1;u>=0;u--){var f=c>>u&1;i!==r[0]&&(i=this.sqr(i)),0!==f||0!==o?(o<<=1,o|=f,(4===++s||0===n&&0===u)&&(i=this.mul(i,r[o]),s=0,o=0)):s=0}l=26}return i},w.prototype.convertTo=function(t){var e=t.umod(this.m);return e===t?e.clone():e},w.prototype.convertFrom=function(t){var e=t.clone();return e.red=null,e},a.mont=function(t){return new M(t)},i(M,w),M.prototype.convertTo=function(t){return this.imod(t.ushln(this.shift))},M.prototype.convertFrom=function(t){var e=this.imod(t.mul(this.rinv));return e.red=null,e},M.prototype.imul=function(t,e){if(t.isZero()||e.isZero())return t.words[0]=0,t.length=1,t;var r=t.imul(e),n=r.maskn(this.shift).mul(this.minv).imaskn(this.shift).mul(this.m),i=r.isub(n).iushrn(this.shift),a=i;return i.cmp(this.m)>=0?a=i.isub(this.m):i.cmpn(0)<0&&(a=i.iadd(this.m)),a._forceRed(this)},M.prototype.mul=function(t,e){if(t.isZero()||e.isZero())return new a(0)._forceRed(this);var 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f=r-1;f>=0;--f)n.push(a(l[f],c[f],n[o]+u*i[o])),i.push(0),o+=1}}},{"binary-search-bounds":70,"cubic-hermite":115}],143:[function(t,e,r){var n=t("dtype");e.exports=function(t,e,r){if(!t)throw new TypeError("must specify data as first parameter");if(r=0|+(r||0),Array.isArray(t)&&Array.isArray(t[0])){var i=t[0].length,a=t.length*i;e&&"string"!=typeof e||(e=new(n(e||"float32"))(a+r));var o=e.length-r;if(a!==o)throw new Error("source length "+a+" ("+i+"x"+t.length+") does not match destination length "+o);for(var s=0,l=r;s<t.length;s++)for(var c=0;c<i;c++)e[l++]=t[s][c]}else if(e&&"string"!=typeof e)e.set(t,r);else{var u=n(e||"float32");0===r?e=new u(t):(e=new u(t.length+r)).set(t,r)}return e}},{dtype:133}],144:[function(t,e,r){"use strict";e.exports=function(t){return new c(t||p,null)};var n=0,i=1;function a(t,e,r,n,i,a){this._color=t,this.key=e,this.value=r,this.left=n,this.right=i,this._count=a}function o(t){return new a(t._color,t.key,t.value,t.left,t.right,t._count)}function 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e=this.root,r=[];;){if(r.push(e),e.left){if(t<e.left._count){e=e.left;continue}t-=e.left._count}if(!t)return new f(this,r);if(t-=1,!e.right)break;if(t>=e.right._count)break;e=e.right}return new f(this,[])},u.ge=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<=0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.gt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a<0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.lt=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>0&&(i=n.length),r=a<=0?r.left:r.right}return n.length=i,new f(this,n)},u.le=function(t){for(var e=this._compare,r=this.root,n=[],i=0;r;){var a=e(t,r.key);n.push(r),a>=0&&(i=n.length),r=a<0?r.left:r.right}return n.length=i,new f(this,n)},u.find=function(t){for(var e=this._compare,r=this.root,n=[];r;){var i=e(t,r.key);if(n.push(r),0===i)return new 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a(r._color,r.key,r.value,r.left,e[u+1],r._count)}if((r=e[e.length-1]).left&&r.right){var f=e.length;for(r=r.left;r.right;)e.push(r),r=r.right;var h=e[f-1];e.push(new a(r._color,h.key,h.value,r.left,r.right,r._count)),e[f-1].key=r.key,e[f-1].value=r.value;for(u=e.length-2;u>=f;--u)r=e[u],e[u]=new a(r._color,r.key,r.value,r.left,e[u+1],r._count);e[f-1].left=e[f]}if((r=e[e.length-1])._color===n){var p=e[e.length-2];p.left===r?p.left=null:p.right===r&&(p.right=null),e.pop();for(u=0;u<e.length;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(r.left||r.right){r.left?d(r,r.left):r.right&&d(r,r.right),r._color=i;for(u=0;u<e.length-1;++u)e[u]._count--;return new c(this.tree._compare,e[0])}if(1===e.length)return new c(this.tree._compare,null);for(u=0;u<e.length;++u)e[u]._count--;var m=e[e.length-2];return function(t){for(var e,r,a,c,u=t.length-1;u>=0;--u){if(e=t[u],0===u)return void(e._color=i);if((r=t[u-1]).left===e){if((a=r.right).right&&a.right._color===n)return c=(a=r.right=o(a)).right=o(a.right),r.right=a.left,a.left=r,a.right=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),void(t[u-1]=a);if(a.left&&a.left._color===n)return c=(a=r.right=o(a)).left=o(a.left),r.right=c.left,a.left=c.right,c.left=r,c.right=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).left===r?f.left=c:f.right=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.right=s(n,a));r.right=s(n,a);continue}a=o(a),r.right=a.left,a.left=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).left===r?f.left=a:f.right=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}else{if((a=r.left).left&&a.left._color===n)return c=(a=r.left=o(a)).left=o(a.left),r.left=a.right,a.right=r,a.left=c,a._color=r._color,e._color=i,r._color=i,c._color=i,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),void(t[u-1]=a);if(a.right&&a.right._color===n)return c=(a=r.left=o(a)).right=o(a.right),r.left=c.right,a.right=c.left,c.right=r,c.left=a,c._color=r._color,r._color=i,a._color=i,e._color=i,l(r),l(a),l(c),u>1&&((f=t[u-2]).right===r?f.right=c:f.left=c),void(t[u-1]=c);if(a._color===i){if(r._color===n)return r._color=i,void(r.left=s(n,a));r.left=s(n,a);continue}var f;a=o(a),r.left=a.right,a.right=r,a._color=r._color,r._color=n,l(r),l(a),u>1&&((f=t[u-2]).right===r?f.right=a:f.left=a),t[u-1]=a,t[u]=r,u+1<t.length?t[u+1]=e:t.push(e),u+=2}}}(e),m.left===r?m.left=null:m.right=null,new c(this.tree._compare,e[0])},Object.defineProperty(h,"key",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].key},enumerable:!0}),Object.defineProperty(h,"value",{get:function(){if(this._stack.length>0)return this._stack[this._stack.length-1].value},enumerable:!0}),Object.defineProperty(h,"index",{get:function(){var t=0,e=this._stack;if(0===e.length){var r=this.tree.root;return 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c(this.tree._compare,r[0])},h.prev=function(){var t=this._stack;if(0!==t.length){var e=t[t.length-1];if(e.left)for(e=e.left;e;)t.push(e),e=e.right;else for(t.pop();t.length>0&&t[t.length-1].left===e;)e=t[t.length-1],t.pop()}},Object.defineProperty(h,"hasPrev",{get:function(){var t=this._stack;if(0===t.length)return!1;if(t[t.length-1].left)return!0;for(var e=t.length-1;e>0;--e)if(t[e-1].right===t[e])return!0;return!1}})},{}],145:[function(t,e,r){var n=[.9999999999998099,676.5203681218851,-1259.1392167224028,771.3234287776531,-176.6150291621406,12.507343278686905,-.13857109526572012,9984369578019572e-21,1.5056327351493116e-7],i=607/128,a=[.9999999999999971,57.15623566586292,-59.59796035547549,14.136097974741746,-.4919138160976202,3399464998481189e-20,4652362892704858e-20,-9837447530487956e-20,.0001580887032249125,-.00021026444172410488,.00021743961811521265,-.0001643181065367639,8441822398385275e-20,-26190838401581408e-21,36899182659531625e-22];function o(t){if(t<0)return 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l=i.point(a.geometry[0][s],e,t.z2,t.x,t.y);if(l[0]!==-r&&l[0]!==e+r||l[1]!==-r&&l[1]!==e+r)return!1}return!0}l.prototype.options={maxZoom:14,indexMaxZoom:5,indexMaxPoints:1e5,solidChildren:!1,tolerance:3,extent:4096,buffer:64,debug:0},l.prototype.splitTile=function(t,e,r,n,i,o,l){for(var d=[t,e,r,n],p=this.options,m=p.debug,v=null;d.length;){n=d.pop(),r=d.pop(),e=d.pop(),t=d.pop();var g=1<<e,y=c(e,r,n),b=this.tiles[y],x=e===p.maxZoom?0:p.tolerance/(g*p.extent);if(!b&&(m>1&&console.time("creation"),b=this.tiles[y]=s(t,g,r,n,x,e===p.maxZoom),this.tileCoords.push({z:e,x:r,y:n}),m)){m>1&&(console.log("tile z%d-%d-%d (features: %d, points: %d, simplified: %d)",e,r,n,b.numFeatures,b.numPoints,b.numSimplified),console.timeEnd("creation"));var _="z"+e;this.stats[_]=(this.stats[_]||0)+1,this.total++}if(b.source=t,i){if(e===p.maxZoom||e===i)continue;var w=1<<i-e;if(r!==Math.floor(o/w)||n!==Math.floor(l/w))continue}else 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m=l("labels");l("labelFont")&&(m=!0),o("labelEnable"),a("labelSize"),a("labelPad"),c("labelColor"),o("lineEnable"),o("lineMirror"),a("lineWidth"),c("lineColor"),o("lineTickEnable"),o("lineTickMirror"),a("lineTickLength"),a("lineTickWidth"),c("lineTickColor"),o("gridEnable"),a("gridWidth"),c("gridColor"),o("zeroEnable"),c("zeroLineColor"),a("zeroLineWidth"),o("backgroundEnable"),c("backgroundColor"),this._text?this._text&&(m||u)&&this._text.update(this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont):this._text=n(this.gl,this.bounds,this.labels,this.labelFont,this.ticks,this.tickFont),this._lines&&u&&(this._lines.dispose(),this._lines=null),this._lines||(this._lines=i(this.gl,this.bounds,this.ticks))};var d=[new h,new h,new h];function p(t,e,r,n,i){for(var a=t.primalOffset,o=t.primalMinor,s=t.mirrorOffset,l=t.mirrorMinor,c=n[e],u=0;u<3;++u)if(e!==u){var f=a,h=s,d=o,p=l;c&1<<u&&(f=s,h=a,d=l,p=o),f[u]=r[0][u],h[u]=r[1][u],i[u]>0?(d[u]=-1,p[u]=0):(d[u]=0,p[u]=1)}}var m=[0,0,0],v={model:l,view:l,projection:l};f.isOpaque=function(){return!0},f.isTransparent=function(){return!1},f.drawTransparent=function(t){};var g=[0,0,0],y=[0,0,0],b=[0,0,0];f.draw=function(t){t=t||v;for(var e=this.gl,r=t.model||l,n=t.view||l,i=t.projection||l,a=this.bounds,s=o(r,n,i,a),u=s.cubeEdges,f=s.axis,h=n[12],x=n[13],_=n[14],w=n[15],M=this.pixelRatio*(i[3]*h+i[7]*x+i[11]*_+i[15]*w)/e.drawingBufferHeight,k=0;k<3;++k)this.lastCubeProps.cubeEdges[k]=u[k],this.lastCubeProps.axis[k]=f[k];var A=d;for(k=0;k<3;++k)p(d[k],k,this.bounds,u,f);e=this.gl;var T=m;for(k=0;k<3;++k)this.backgroundEnable[k]?T[k]=f[k]:T[k]=0;this._background.draw(r,n,i,a,T,this.backgroundColor),this._lines.bind(r,n,i,this);for(k=0;k<3;++k){var E=[0,0,0];f[k]>0?E[k]=a[1][k]:E[k]=a[0][k];for(var S=0;S<2;++S){var L=(k+1+S)%3,C=(k+1+(1^S))%3;this.gridEnable[L]&&this._lines.drawGrid(L,C,this.bounds,E,this.gridColor[L],this.gridWidth[L]*this.pixelRatio)}for(S=0;S<2;++S){L=(k+1+S)%3,C=(k+1+(1^S))%3;this.zeroEnable[C]&&a[0][C]<=0&&a[1][C]>=0&&this._lines.drawZero(L,C,this.bounds,E,this.zeroLineColor[C],this.zeroLineWidth[C]*this.pixelRatio)}}for(k=0;k<3;++k){this.lineEnable[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].primalOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio),this.lineMirror[k]&&this._lines.drawAxisLine(k,this.bounds,A[k].mirrorOffset,this.lineColor[k],this.lineWidth[k]*this.pixelRatio);var P=c(g,A[k].primalMinor),z=c(y,A[k].mirrorMinor),O=this.lineTickLength;for(S=0;S<3;++S){var D=M/r[5*S];P[S]*=O[S]*D,z[S]*=O[S]*D}this.lineTickEnable[k]&&this._lines.drawAxisTicks(k,A[k].primalOffset,P,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio),this.lineTickMirror[k]&&this._lines.drawAxisTicks(k,A[k].mirrorOffset,z,this.lineTickColor[k],this.lineTickWidth[k]*this.pixelRatio)}this._lines.unbind(),this._text.bind(r,n,i,this.pixelRatio);for(k=0;k<3;++k){var I=A[k].primalMinor,R=c(b,A[k].primalOffset);for(S=0;S<3;++S)this.lineTickEnable[k]&&(R[S]+=M*I[S]*Math.max(this.lineTickLength[S],0)/r[5*S]);if(this.tickEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.tickPad[S]/r[5*S];this._text.drawTicks(k,this.tickSize[k],this.tickAngle[k],R,this.tickColor[k])}if(this.labelEnable[k]){for(S=0;S<3;++S)R[S]+=M*I[S]*this.labelPad[S]/r[5*S];R[k]+=.5*(a[0][k]+a[1][k]),this._text.drawLabel(k,this.labelSize[k],this.labelAngle[k],R,this.labelColor[k])}}this._text.unbind()},f.dispose=function(){this._text.dispose(),this._lines.dispose(),this._background.dispose(),this._lines=null,this._text=null,this._background=null,this.gl=null}},{"./lib/background.js":158,"./lib/cube.js":159,"./lib/lines.js":160,"./lib/text.js":162,"./lib/ticks.js":163}],158:[function(t,e,r){"use strict";e.exports=function(t){for(var e=[],r=[],s=0,l=0;l<3;++l)for(var c=(l+1)%3,u=(l+2)%3,f=[0,0,0],h=[0,0,0],d=-1;d<=1;d+=2){r.push(s,s+2,s+1,s+1,s+2,s+3),f[l]=d,h[l]=d;for(var p=-1;p<=1;p+=2){f[c]=p;for(var m=-1;m<=1;m+=2)f[u]=m,e.push(f[0],f[1],f[2],h[0],h[1],h[2]),s+=1}var v=c;c=u,u=v}var g=n(t,new Float32Array(e)),y=n(t,new Uint16Array(r),t.ELEMENT_ARRAY_BUFFER),b=i(t,[{buffer:g,type:t.FLOAT,size:3,offset:0,stride:24},{buffer:g,type:t.FLOAT,size:3,offset:12,stride:24}],y),x=a(t);return x.attributes.position.location=0,x.attributes.normal.location=1,new o(t,g,b,x)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").bg;function o(t,e,r,n){this.gl=t,this.buffer=e,this.vao=r,this.shader=n}var s=o.prototype;s.draw=function(t,e,r,n,i,a){for(var o=!1,s=0;s<3;++s)o=o||i[s];if(o){var l=this.gl;l.enable(l.POLYGON_OFFSET_FILL),l.polygonOffset(1,2),this.shader.bind(),this.shader.uniforms={model:t,view:e,projection:r,bounds:n,enable:i,colors:a},this.vao.bind(),this.vao.draw(this.gl.TRIANGLES,36),this.vao.unbind(),l.disable(l.POLYGON_OFFSET_FILL)}},s.dispose=function(){this.vao.dispose(),this.buffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],159:[function(t,e,r){"use strict";e.exports=function(t,e,r,a){i(s,e,t),i(s,r,s);for(var d=0,y=0;y<2;++y){u[2]=a[y][2];for(var b=0;b<2;++b){u[1]=a[b][1];for(var x=0;x<2;++x)u[0]=a[x][0],h(l[d],u,s),d+=1}}for(var _=-1,y=0;y<8;++y){for(var w=l[y][3],M=0;M<3;++M)c[y][M]=l[y][M]/w;w<0&&(_<0?_=y:c[y][2]<c[_][2]&&(_=y))}if(_<0){_=0;for(var k=0;k<3;++k){for(var A=(k+2)%3,T=(k+1)%3,E=-1,S=-1,L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T);o(c[C],c[P],c[z],f)<0||(L?E=1:S=1)}if(E<0||S<0)S>E&&(_|=1<<k);else{for(var L=0;L<2;++L){var C=L<<k,P=C+(L<<A)+(1-L<<T),z=C+(1-L<<A)+(L<<T),O=p([l[C],l[P],l[z],l[C+(1<<A)+(1<<T)]]);L?E=O:S=O}S>E&&(_|=1<<k)}}}for(var D=7^_,I=-1,y=0;y<8;++y)y!==_&&y!==D&&(I<0?I=y:c[I][1]>c[y][1]&&(I=y));for(var R=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D){R<0&&(R=N);var T=c[N];T[0]<c[R][0]&&(R=N)}}for(var F=-1,y=0;y<3;++y){var N=I^1<<y;if(N!==_&&N!==D&&N!==R){F<0&&(F=N);var T=c[N];T[0]>c[F][0]&&(F=N)}}var j=m;j[0]=j[1]=j[2]=0,j[n.log2(R^I)]=I&R,j[n.log2(I^F)]=I&F;var B=7^F;B===_||B===D?(B=7^R,j[n.log2(F^B)]=B&F):j[n.log2(R^B)]=B&R;for(var U=v,V=_,k=0;k<3;++k)U[k]=V&1<<k?-1:1;return g};var n=t("bit-twiddle"),i=t("gl-mat4/multiply"),a=(t("gl-mat4/invert"),t("split-polygon")),o=t("robust-orientation"),s=new Array(16),l=(new Array(16),new Array(8)),c=new Array(8),u=new Array(3),f=[0,0,0];function h(t,e,r){for(var n=0;n<4;++n){t[n]=r[12+n];for(var i=0;i<3;++i)t[n]+=e[i]*r[4*i+n]}}!function(){for(var t=0;t<8;++t)l[t]=[1,1,1,1],c[t]=[1,1,1]}();var d=[[0,0,1,0,0],[0,0,-1,1,0],[0,-1,0,1,0],[0,1,0,1,0],[-1,0,0,1,0],[1,0,0,1,0]];function p(t){for(var e=0;e<d.length;++e)if((t=a.positive(t,d[e])).length<3)return 0;var r=t[0],n=r[0]/r[3],i=r[1]/r[3],o=0;for(e=1;e+1<t.length;++e){var s=t[e],l=t[e+1],c=s[0]/s[3]-n,u=s[1]/s[3]-i,f=l[0]/l[3]-n,h=l[1]/l[3]-i;o+=Math.abs(c*h-u*f)}return o}var m=[1,1,1],v=[0,0,0],g={cubeEdges:m,axis:v}},{"bit-twiddle":71,"gl-mat4/invert":186,"gl-mat4/multiply":188,"robust-orientation":495,"split-polygon":515}],160:[function(t,e,r){"use strict";e.exports=function(t,e,r){var o=[],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[0,0,0];o.push(0,0,1,0,1,1,0,0,-1,0,0,-1,0,1,1,0,1,-1);for(var f=0;f<3;++f){for(var h=o.length/3|0,p=0;p<r[f].length;++p){var m=+r[f][p].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;s[f]=h,l[f]=v-h;for(var h=o.length/3|0,g=0;g<r[f].length;++g){var m=+r[f][g].x;o.push(m,0,1,m,1,1,m,0,-1,m,0,-1,m,1,1,m,1,-1)}var v=o.length/3|0;c[f]=h,u[f]=v-h}var y=n(t,new Float32Array(o)),b=i(t,[{buffer:y,type:t.FLOAT,size:3,stride:0,offset:0}]),x=a(t);return x.attributes.position.location=0,new d(t,y,b,x,l,s,u,c)};var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders").line,o=[0,0,0],s=[0,0,0],l=[0,0,0],c=[0,0,0],u=[1,1];function f(t){return t[0]=t[1]=t[2]=0,t}function h(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t}function d(t,e,r,n,i,a,o,s){this.gl=t,this.vertBuffer=e,this.vao=r,this.shader=n,this.tickCount=i,this.tickOffset=a,this.gridCount=o,this.gridOffset=s}var p=d.prototype;p.bind=function(t,e,r){this.shader.bind(),this.shader.uniforms.model=t,this.shader.uniforms.view=e,this.shader.uniforms.projection=r,u[0]=this.gl.drawingBufferWidth,u[1]=this.gl.drawingBufferHeight,this.shader.uniforms.screenShape=u,this.vao.bind()},p.unbind=function(){this.vao.unbind()},p.drawAxisLine=function(t,e,r,n,i){var a=f(s);this.shader.uniforms.majorAxis=s,a[t]=e[1][t]-e[0][t],this.shader.uniforms.minorAxis=a;var o,u=h(c,r);u[t]+=e[0][t],this.shader.uniforms.offset=u,this.shader.uniforms.lineWidth=i,this.shader.uniforms.color=n,(o=f(l))[(t+2)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6),(o=f(l))[(t+1)%3]=1,this.shader.uniforms.screenAxis=o,this.vao.draw(this.gl.TRIANGLES,6)},p.drawAxisTicks=function(t,e,r,n,i){if(this.tickCount[t]){var a=f(o);a[t]=1,this.shader.uniforms.majorAxis=a,this.shader.uniforms.offset=e,this.shader.uniforms.minorAxis=r,this.shader.uniforms.color=n,this.shader.uniforms.lineWidth=i;var s=f(l);s[t]=1,this.shader.uniforms.screenAxis=s,this.vao.draw(this.gl.TRIANGLES,this.tickCount[t],this.tickOffset[t])}},p.drawGrid=function(t,e,r,n,i,a){if(this.gridCount[t]){var u=f(s);u[e]=r[1][e]-r[0][e],this.shader.uniforms.minorAxis=u;var d=h(c,n);d[e]+=r[0][e],this.shader.uniforms.offset=d;var p=f(o);p[t]=1,this.shader.uniforms.majorAxis=p;var m=f(l);m[t]=1,this.shader.uniforms.screenAxis=m,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,this.gridCount[t],this.gridOffset[t])}},p.drawZero=function(t,e,r,n,i,a){var o=f(s);this.shader.uniforms.majorAxis=o,o[t]=r[1][t]-r[0][t],this.shader.uniforms.minorAxis=o;var u=h(c,n);u[t]+=r[0][t],this.shader.uniforms.offset=u;var d=f(l);d[e]=1,this.shader.uniforms.screenAxis=d,this.shader.uniforms.lineWidth=a,this.shader.uniforms.color=i,this.vao.draw(this.gl.TRIANGLES,6)},p.dispose=function(){this.vao.dispose(),this.vertBuffer.dispose(),this.shader.dispose()}},{"./shaders":161,"gl-buffer":165,"gl-vao":237}],161:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, majorAxis, minorAxis, screenAxis;\nuniform float lineWidth;\nuniform vec2 screenShape;\n\nvec3 project(vec3 p) {\n  vec4 pp = projection * view * model * vec4(p, 1.0);\n  return pp.xyz / max(pp.w, 0.0001);\n}\n\nvoid main() {\n  vec3 major = position.x * majorAxis;\n  vec3 minor = position.y * minorAxis;\n\n  vec3 vPosition = major + minor + offset;\n  vec3 pPosition = project(vPosition);\n  vec3 offset = project(vPosition + screenAxis * position.z);\n\n  vec2 screen = normalize((offset - pPosition).xy * screenShape) / screenShape;\n\n  gl_Position = vec4(pPosition + vec3(0.5 * screen * lineWidth, 0), 1.0);\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.line=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"}])};var s=n(["#define GLSLIFY 1\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\nuniform vec3 offset, axis;\nuniform float scale, angle, pixelScale;\nuniform vec2 resolution;\n\nvoid main() {  \n  //Compute plane offset\n  vec2 planeCoord = position.xy * pixelScale;\n  mat2 planeXform = scale * mat2(cos(angle), sin(angle),\n                                -sin(angle), cos(angle));\n  vec2 viewOffset = 2.0 * planeXform * planeCoord / resolution;\n\n  //Compute world offset\n  float axisDistance = position.z;\n  vec3 dataPosition = axisDistance * axis + offset;\n  vec4 worldPosition = model * vec4(dataPosition, 1);\n  \n  //Compute clip position\n  vec4 viewPosition = view * worldPosition;\n  vec4 clipPosition = projection * viewPosition;\n  clipPosition /= clipPosition.w;\n\n  //Apply text offset in clip coordinates\n  clipPosition += vec4(viewOffset, 0, 0);\n\n  //Done\n  gl_Position = clipPosition;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = color;\n}"]);r.text=function(t){return i(t,s,l,null,[{name:"position",type:"vec3"}])};var c=n(["#define GLSLIFY 1\nattribute vec3 position;\nattribute vec3 normal;\n\nuniform mat4 model, view, projection;\nuniform vec3 enable;\nuniform vec3 bounds[2];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  if(dot(normal, enable) > 0.0) {\n    vec3 nPosition = mix(bounds[0], bounds[1], 0.5 * (position + 1.0));\n    gl_Position = projection * view * model * vec4(nPosition, 1.0);\n  } else {\n    gl_Position = vec4(0,0,0,0);\n  }\n  colorChannel = abs(normal);\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 colors[3];\n\nvarying vec3 colorChannel;\n\nvoid main() {\n  gl_FragColor = colorChannel.x * colors[0] + \n                 colorChannel.y * colors[1] +\n                 colorChannel.z * colors[2];\n}"]);r.bg=function(t){return i(t,c,u,null,[{name:"position",type:"vec3"},{name:"normal",type:"vec3"}])}},{"gl-shader":220,glslify:253}],162:[function(t,e,r){(function(r){"use strict";e.exports=function(t,e,r,a,s,l){var u=n(t),f=i(t,[{buffer:u,size:3}]),h=o(t);h.attributes.position.location=0;var d=new c(t,h,u,f);return d.update(e,r,a,s,l),d};var n=t("gl-buffer"),i=t("gl-vao"),a=t("vectorize-text"),o=t("./shaders").text,s=window||r.global||{},l=s.__TEXT_CACHE||{};s.__TEXT_CACHE={};function c(t,e,r,n){this.gl=t,this.shader=e,this.buffer=r,this.vao=n,this.tickOffset=this.tickCount=this.labelOffset=this.labelCount=null}var u=c.prototype,f=[0,0];u.bind=function(t,e,r,n){this.vao.bind(),this.shader.bind();var i=this.shader.uniforms;i.model=t,i.view=e,i.projection=r,i.pixelScale=n,f[0]=this.gl.drawingBufferWidth,f[1]=this.gl.drawingBufferHeight,this.shader.uniforms.resolution=f},u.unbind=function(){this.vao.unbind()},u.update=function(t,e,r,n,i){this.gl;var o=[];function s(t,e,r,n){var i=l[r];i||(i=l[r]={});var s=i[e];s||(s=i[e]=function(t,e){try{return a(t,e)}catch(t){return console.warn("error vectorizing text:",t),{cells:[],positions:[]}}}(e,{triangles:!0,font:r,textAlign:"center",textBaseline:"middle"}));for(var c=(n||12)/12,u=s.positions,f=s.cells,h=0,d=f.length;h<d;++h)for(var p=f[h],m=2;m>=0;--m){var 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i.length}l.update=function(t){"lineWidth"in(t=t||{})&&(this.lineWidth=t.lineWidth,Array.isArray(this.lineWidth)||(this.lineWidth=[this.lineWidth,this.lineWidth,this.lineWidth])),"capSize"in t&&(this.capSize=t.capSize,Array.isArray(this.capSize)||(this.capSize=[this.capSize,this.capSize,this.capSize])),"opacity"in t&&(this.opacity=t.opacity);var e=t.color||[[0,0,0],[0,0,0],[0,0,0]],r=t.position,n=t.error;if(Array.isArray(e[0])||(e=[e,e,e]),r&&n){var i=[],a=r.length,o=0;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.lineCount=[0,0,0];for(var s=0;s<3;++s){this.lineOffset[s]=o;t:for(var l=0;l<a;++l){for(var u=r[l],h=0;h<3;++h)if(isNaN(u[h])||!isFinite(u[h]))continue t;var d=n[l],p=e[s];if(Array.isArray(p[0])&&(p=e[l]),3===p.length&&(p=[p[0],p[1],p[2],1]),!isNaN(d[0][s])&&!isNaN(d[1][s])){var m;if(d[0][s]<0)(m=u.slice())[s]+=d[0][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s);if(d[1][s]>0)(m=u.slice())[s]+=d[1][s],i.push(u[0],u[1],u[2],p[0],p[1],p[2],p[3],0,0,0,m[0],m[1],m[2],p[0],p[1],p[2],p[3],0,0,0),c(this.bounds,m),o+=2+f(i,m,p,s)}}this.lineCount[s]=o-this.lineOffset[s]}this.buffer.update(i)}},l.dispose=function(){this.shader.dispose(),this.buffer.dispose(),this.vao.dispose()}},{"./shaders/index":170,"gl-buffer":165,"gl-vao":237}],169:[function(t,e,r){e.exports=function(t){"string"==typeof t&&(t=[t]);for(var e=[].slice.call(arguments,1),r=[],n=0;n<t.length-1;n++)r.push(t[n],e[n]||"");return r.push(t[n]),r.join("")}},{}],170:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, offset;\nattribute vec4 color;\nuniform mat4 model, view, projection;\nuniform float capSize;\nvarying vec4 fragColor;\nvarying vec3 fragPosition;\n\nvoid main() {\n  vec4 worldPosition  = model * vec4(position, 1.0);\n  worldPosition       = (worldPosition / worldPosition.w) + vec4(capSize * offset, 0.0);\n  gl_Position         = projection * view * worldPosition;\n  fragColor           = color;\n  fragPosition        = position;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\nuniform vec3 clipBounds[2];\nuniform float opacity;\nvarying vec3 fragPosition;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(fragPosition, clipBounds[0])) || any(greaterThan(fragPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = opacity * fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"offset",type:"vec3"}])}},{"gl-shader":220,glslify:169}],171:[function(t,e,r){"use strict";var n=t("gl-texture2d");e.exports=function(t,e,r,n){i||(i=t.FRAMEBUFFER_UNSUPPORTED,a=t.FRAMEBUFFER_INCOMPLETE_ATTACHMENT,o=t.FRAMEBUFFER_INCOMPLETE_DIMENSIONS,s=t.FRAMEBUFFER_INCOMPLETE_MISSING_ATTACHMENT);var c=t.getExtension("WEBGL_draw_buffers");!l&&c&&function(t,e){var r=t.getParameter(e.MAX_COLOR_ATTACHMENTS_WEBGL);l=new Array(r+1);for(var n=0;n<=r;++n){for(var i=new Array(r),a=0;a<n;++a)i[a]=t.COLOR_ATTACHMENT0+a;for(var a=n;a<r;++a)i[a]=t.NONE;l[n]=i}}(t,c);Array.isArray(e)&&(n=r,r=0|e[1],e=0|e[0]);if("number"!=typeof e)throw new Error("gl-fbo: Missing shape parameter");var u=t.getParameter(t.MAX_RENDERBUFFER_SIZE);if(e<0||e>u||r<0||r>u)throw new Error("gl-fbo: Parameters are too large for FBO");var f=1;if("color"in(n=n||{})){if((f=Math.max(0|n.color,0))<0)throw new Error("gl-fbo: Must specify a nonnegative number of colors");if(f>1){if(!c)throw new Error("gl-fbo: Multiple draw buffer extension not supported");if(f>t.getParameter(c.MAX_COLOR_ATTACHMENTS_WEBGL))throw new Error("gl-fbo: Context does not support "+f+" draw buffers")}}var h=t.UNSIGNED_BYTE,d=t.getExtension("OES_texture_float");if(n.float&&f>0){if(!d)throw new Error("gl-fbo: Context does not support floating point textures");h=t.FLOAT}else n.preferFloat&&f>0&&d&&(h=t.FLOAT);var m=!0;"depth"in n&&(m=!!n.depth);var v=!1;"stencil"in n&&(v=!!n.stencil);return new p(t,e,r,h,f,m,v,c)};var i,a,o,s,l=null;function c(t){return[t.getParameter(t.FRAMEBUFFER_BINDING),t.getParameter(t.RENDERBUFFER_BINDING),t.getParameter(t.TEXTURE_BINDING_2D)]}function u(t,e){t.bindFramebuffer(t.FRAMEBUFFER,e[0]),t.bindRenderbuffer(t.RENDERBUFFER,e[1]),t.bindTexture(t.TEXTURE_2D,e[2])}function f(t){switch(t){case i:throw new Error("gl-fbo: Framebuffer unsupported");case a:throw new Error("gl-fbo: Framebuffer incomplete attachment");case o:throw new Error("gl-fbo: Framebuffer incomplete dimensions");case s:throw new Error("gl-fbo: Framebuffer incomplete missing attachment");default:throw new Error("gl-fbo: Framebuffer failed for unspecified reason")}}function h(t,e,r,i,a,o){if(!i)return null;var s=n(t,e,r,a,i);return s.magFilter=t.NEAREST,s.minFilter=t.NEAREST,s.mipSamples=1,s.bind(),t.framebufferTexture2D(t.FRAMEBUFFER,o,t.TEXTURE_2D,s.handle,0),s}function d(t,e,r,n,i){var a=t.createRenderbuffer();return t.bindRenderbuffer(t.RENDERBUFFER,a),t.renderbufferStorage(t.RENDERBUFFER,n,e,r),t.framebufferRenderbuffer(t.FRAMEBUFFER,i,t.RENDERBUFFER,a),a}function p(t,e,r,n,i,a,o,s){this.gl=t,this._shape=[0|e,0|r],this._destroyed=!1,this._ext=s,this.color=new Array(i);for(var p=0;p<i;++p)this.color[p]=null;this._color_rb=null,this.depth=null,this._depth_rb=null,this._colorType=n,this._useDepth=a,this._useStencil=o;var m=this,v=[0|e,0|r];Object.defineProperties(v,{0:{get:function(){return m._shape[0]},set:function(t){return m.width=t}},1:{get:function(){return m._shape[1]},set:function(t){return m.height=t}}}),this._shapeVector=v,function(t){var e=c(t.gl),r=t.gl,n=t.handle=r.createFramebuffer(),i=t._shape[0],a=t._shape[1],o=t.color.length,s=t._ext,p=t._useStencil,m=t._useDepth,v=t._colorType;r.bindFramebuffer(r.FRAMEBUFFER,n);for(var g=0;g<o;++g)t.color[g]=h(r,i,a,v,r.RGBA,r.COLOR_ATTACHMENT0+g);0===o?(t._color_rb=d(r,i,a,r.RGBA4,r.COLOR_ATTACHMENT0),s&&s.drawBuffersWEBGL(l[0])):o>1&&s.drawBuffersWEBGL(l[o]);var y=r.getExtension("WEBGL_depth_texture");y?p?t.depth=h(r,i,a,y.UNSIGNED_INT_24_8_WEBGL,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m&&(t.depth=h(r,i,a,r.UNSIGNED_SHORT,r.DEPTH_COMPONENT,r.DEPTH_ATTACHMENT)):m&&p?t._depth_rb=d(r,i,a,r.DEPTH_STENCIL,r.DEPTH_STENCIL_ATTACHMENT):m?t._depth_rb=d(r,i,a,r.DEPTH_COMPONENT16,r.DEPTH_ATTACHMENT):p&&(t._depth_rb=d(r,i,a,r.STENCIL_INDEX,r.STENCIL_ATTACHMENT));var b=r.checkFramebufferStatus(r.FRAMEBUFFER);if(b!==r.FRAMEBUFFER_COMPLETE){for(t._destroyed=!0,r.bindFramebuffer(r.FRAMEBUFFER,null),r.deleteFramebuffer(t.handle),t.handle=null,t.depth&&(t.depth.dispose(),t.depth=null),t._depth_rb&&(r.deleteRenderbuffer(t._depth_rb),t._depth_rb=null),g=0;g<t.color.length;++g)t.color[g].dispose(),t.color[g]=null;t._color_rb&&(r.deleteRenderbuffer(t._color_rb),t._color_rb=null),u(r,e),f(b)}u(r,e)}(this)}var m=p.prototype;function v(t,e,r){if(t._destroyed)throw new Error("gl-fbo: Can't resize destroyed FBO");if(t._shape[0]!==e||t._shape[1]!==r){var n=t.gl,i=n.getParameter(n.MAX_RENDERBUFFER_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-fbo: Can't resize FBO, invalid dimensions");t._shape[0]=e,t._shape[1]=r;for(var a=c(n),o=0;o<t.color.length;++o)t.color[o].shape=t._shape;t._color_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._color_rb),n.renderbufferStorage(n.RENDERBUFFER,n.RGBA4,t._shape[0],t._shape[1])),t.depth&&(t.depth.shape=t._shape),t._depth_rb&&(n.bindRenderbuffer(n.RENDERBUFFER,t._depth_rb),t._useDepth&&t._useStencil?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_STENCIL,t._shape[0],t._shape[1]):t._useDepth?n.renderbufferStorage(n.RENDERBUFFER,n.DEPTH_COMPONENT16,t._shape[0],t._shape[1]):t._useStencil&&n.renderbufferStorage(n.RENDERBUFFER,n.STENCIL_INDEX,t._shape[0],t._shape[1])),n.bindFramebuffer(n.FRAMEBUFFER,t.handle);var s=n.checkFramebufferStatus(n.FRAMEBUFFER);s!==n.FRAMEBUFFER_COMPLETE&&(t.dispose(),u(n,a),f(s)),u(n,a)}}Object.defineProperties(m,{shape:{get:function(){return this._destroyed?[0,0]:this._shapeVector},set:function(t){if(Array.isArray(t)||(t=[0|t,0|t]),2!==t.length)throw new Error("gl-fbo: Shape vector must be length 2");var e=0|t[0],r=0|t[1];return v(this,e,r),[e,r]},enumerable:!1},width:{get:function(){return this._destroyed?0:this._shape[0]},set:function(t){return v(this,t|=0,this._shape[1]),t},enumerable:!1},height:{get:function(){return this._destroyed?0:this._shape[1]},set:function(t){return t|=0,v(this,this._shape[0],t),t},enumerable:!1}}),m.bind=function(){if(!this._destroyed){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,this.handle),t.viewport(0,0,this._shape[0],this._shape[1])}},m.dispose=function(){if(!this._destroyed){this._destroyed=!0;var t=this.gl;t.deleteFramebuffer(this.handle),this.handle=null,this.depth&&(this.depth.dispose(),this.depth=null),this._depth_rb&&(t.deleteRenderbuffer(this._depth_rb),this._depth_rb=null);for(var e=0;e<this.color.length;++e)this.color[e].dispose(),this.color[e]=null;this._color_rb&&(t.deleteRenderbuffer(this._color_rb),this._color_rb=null)}}},{"gl-texture2d":233}],172:[function(t,e,r){var n=t("sprintf-js").sprintf,i=t("gl-constants/lookup"),a=t("glsl-shader-name"),o=t("add-line-numbers");e.exports=function(t,e,r){"use strict";var s=a(e)||"of unknown name (see npm glsl-shader-name)",l="unknown type";void 0!==r&&(l=r===i.FRAGMENT_SHADER?"fragment":"vertex");for(var c=n("Error compiling %s shader %s:\n",l,s),u=n("%s%s",c,t),f=t.split("\n"),h={},d=0;d<f.length;d++){var p=f[d];if(""!==p&&"\0"!==p){var m=parseInt(p.split(":")[2]);if(isNaN(m))throw new Error(n("Could not parse error: %s",p));h[m]=p}}for(var v=o(e).split("\n"),d=0;d<v.length;d++)if(h[d+3]||h[d+2]||h[d+1]){var g=v[d];if(c+=g+"\n",h[d+1]){var y=h[d+1];y=y.substr(y.split(":",3).join(":").length+1).trim(),c+=n("^^^ %s\n\n",y)}}return{long:c.trim(),short:u.trim()}}},{"add-line-numbers":44,"gl-constants/lookup":167,"glsl-shader-name":245,"sprintf-js":516}],173:[function(t,e,r){"use strict";e.exports=function(t,e){var r=t.gl,n=o(r,l.vertex,l.fragment),i=o(r,l.pickVertex,l.pickFragment),a=s(r),u=s(r),f=s(r),h=s(r),d=new c(t,n,i,a,u,f,h);return d.update(e),t.addObject(d),d};var n=t("binary-search-bounds"),i=t("iota-array"),a=t("typedarray-pool"),o=t("gl-shader"),s=t("gl-buffer"),l=t("./lib/shaders");function c(t,e,r,n,i,a,o){this.plot=t,this.shader=e,this.pickShader=r,this.positionBuffer=n,this.weightBuffer=i,this.colorBuffer=a,this.idBuffer=o,this.xData=[],this.yData=[],this.shape=[0,0],this.bounds=[1/0,1/0,-1/0,-1/0],this.pickOffset=0}var u,f=c.prototype,h=[0,0,1,0,0,1,1,0,1,1,0,1];f.draw=(u=[1,0,0,0,1,0,0,0,1],function(){var t=this.plot,e=this.shader,r=this.bounds,n=this.numVertices;if(!(n<=0)){var i=t.gl,a=t.dataBox,o=r[2]-r[0],s=r[3]-r[1],l=a[2]-a[0],c=a[3]-a[1];u[0]=2*o/l,u[4]=2*s/c,u[6]=2*(r[0]-a[0])/l-1,u[7]=2*(r[1]-a[1])/c-1,e.bind();var f=e.uniforms;f.viewTransform=u,f.shape=this.shape;var h=e.attributes;this.positionBuffer.bind(),h.position.pointer(),this.weightBuffer.bind(),h.weight.pointer(i.UNSIGNED_BYTE,!1),this.colorBuffer.bind(),h.color.pointer(i.UNSIGNED_BYTE,!0),i.drawArrays(i.TRIANGLES,0,n)}}),f.drawPick=function(){var t=[1,0,0,0,1,0,0,0,1],e=[0,0,0,0];return function(r){var n=this.plot,i=this.pickShader,a=this.bounds,o=this.numVertices;if(!(o<=0)){var s=n.gl,l=n.dataBox,c=a[2]-a[0],u=a[3]-a[1],f=l[2]-l[0],h=l[3]-l[1];t[0]=2*c/f,t[4]=2*u/h,t[6]=2*(a[0]-l[0])/f-1,t[7]=2*(a[1]-l[1])/h-1;for(var d=0;d<4;++d)e[d]=r>>8*d&255;this.pickOffset=r,i.bind();var p=i.uniforms;p.viewTransform=t,p.pickOffset=e,p.shape=this.shape;var m=i.attributes;return this.positionBuffer.bind(),m.position.pointer(),this.weightBuffer.bind(),m.weight.pointer(s.UNSIGNED_BYTE,!1),this.idBuffer.bind(),m.pickId.pointer(s.UNSIGNED_BYTE,!1),s.drawArrays(s.TRIANGLES,0,o),r+this.shape[0]*this.shape[1]}}}(),f.pick=function(t,e,r){var n=this.pickOffset,i=this.shape[0]*this.shape[1];if(r<n||r>=n+i)return null;var a=r-n,o=this.xData,s=this.yData;return{object:this,pointId:a,dataCoord:[o[a%this.shape[0]],s[a/this.shape[0]|0]]}},f.update=function(t){var e=(t=t||{}).shape||[0,0],r=t.x||i(e[0]),o=t.y||i(e[1]),s=t.z||new Float32Array(e[0]*e[1]);this.xData=r,this.yData=o;var l=t.colorLevels||[0],c=t.colorValues||[0,0,0,1],u=l.length,f=this.bounds,d=f[0]=r[0],p=f[1]=o[0],m=1/((f[2]=r[r.length-1])-d),v=1/((f[3]=o[o.length-1])-p),g=e[0],y=e[1];this.shape=[g,y];var b=(g-1)*(y-1)*(h.length>>>1);this.numVertices=b;for(var x=a.mallocUint8(4*b),_=a.mallocFloat32(2*b),w=a.mallocUint8(2*b),M=a.mallocUint32(b),k=0,A=0;A<y-1;++A)for(var T=v*(o[A]-p),E=v*(o[A+1]-p),S=0;S<g-1;++S)for(var L=m*(r[S]-d),C=m*(r[S+1]-d),P=0;P<h.length;P+=2){var z,O,D,I,R=h[P],N=h[P+1],F=s[(A+N)*g+(S+R)],j=n.le(l,F);if(j<0)z=c[0],O=c[1],D=c[2],I=c[3];else if(j===u-1)z=c[4*u-4],O=c[4*u-3],D=c[4*u-2],I=c[4*u-1];else{var B=(F-l[j])/(l[j+1]-l[j]),U=1-B,V=4*j,q=4*(j+1);z=U*c[V]+B*c[q],O=U*c[V+1]+B*c[q+1],D=U*c[V+2]+B*c[q+2],I=U*c[V+3]+B*c[q+3]}x[4*k]=255*z,x[4*k+1]=255*O,x[4*k+2]=255*D,x[4*k+3]=255*I,_[2*k]=.5*L+.5*C,_[2*k+1]=.5*T+.5*E,w[2*k]=R,w[2*k+1]=N,M[k]=A*g+S,k+=1}this.positionBuffer.update(_),this.weightBuffer.update(w),this.colorBuffer.update(x),this.idBuffer.update(M),a.free(_),a.free(x),a.free(w),a.free(M)},f.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.positionBuffer.dispose(),this.weightBuffer.dispose(),this.colorBuffer.dispose(),this.idBuffer.dispose(),this.plot.removeObject(this)}},{"./lib/shaders":174,"binary-search-bounds":175,"gl-buffer":165,"gl-shader":220,"iota-array":261,"typedarray-pool":534}],174:[function(t,e,r){"use strict";var n=t("glslify");e.exports={fragment:n(["precision lowp float;\n#define GLSLIFY 1\nvarying vec4 fragColor;\nvoid main() {\n  gl_FragColor = vec4(fragColor.rgb * fragColor.a, fragColor.a);\n}\n"]),vertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 color;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  fragColor = color;\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"]),pickFragment:n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nuniform vec2 shape;\nuniform vec4 pickOffset;\n\nvoid main() {\n  vec2 d = step(.5, vWeight);\n  vec4 id = fragId + pickOffset;\n  id.x += d.x + d.y*shape.x;\n\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  gl_FragColor = id/255.;\n}\n"]),pickVertex:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\nattribute vec2 weight;\n\nuniform vec2 shape;\nuniform mat3 viewTransform;\n\nvarying vec4 fragId;\nvarying vec2 vWeight;\n\nvoid main() {\n  vWeight = weight;\n\n  fragId = pickId;\n\n  vec3 vPosition = viewTransform * vec3( position + (weight-.5)/(shape-1.) , 1.0);\n  gl_Position = vec4(vPosition.xy, 0, vPosition.z);\n}\n"])}},{glslify:253}],175:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],176:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, nextPosition;\nattribute float arcLength, lineWidth;\nattribute vec4 color;\n\nuniform vec2 screenShape;\nuniform float pixelRatio;\nuniform mat4 model, view, projection;\n\nvarying vec4 fragColor;\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\n\nvoid main() {\n  vec4 projected = projection * view * model * vec4(position, 1.0);\n  vec4 tangentClip = projection * view * model * vec4(nextPosition - position, 0.0);\n  vec2 tangent = normalize(screenShape * tangentClip.xy);\n  vec2 offset = 0.5 * pixelRatio * lineWidth * vec2(tangent.y, -tangent.x) / screenShape;\n\n  gl_Position = vec4(projected.xy + projected.w * offset, projected.zw);\n\n  worldPosition = position;\n  pixelArcLength = arcLength;\n  fragColor = color;\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3      clipBounds[2];\nuniform sampler2D dashTexture;\nuniform float     dashScale;\nuniform float     opacity;\n\nvarying vec3    worldPosition;\nvarying float   pixelArcLength;\nvarying vec4    fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  float dashWeight = texture2D(dashTexture, vec2(dashScale * pixelArcLength, 0)).r;\n  if(dashWeight < 0.5) {\n    discard;\n  }\n  gl_FragColor = fragColor * opacity;\n}\n"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\n#define FLOAT_MAX  1.70141184e38\n#define FLOAT_MIN  1.17549435e-38\n\nlowp vec4 encode_float_1540259130(highp float v) {\n  highp float av = abs(v);\n\n  //Handle special cases\n  if(av < FLOAT_MIN) {\n    return vec4(0.0, 0.0, 0.0, 0.0);\n  } else if(v > FLOAT_MAX) {\n    return vec4(127.0, 128.0, 0.0, 0.0) / 255.0;\n  } else if(v < -FLOAT_MAX) {\n    return vec4(255.0, 128.0, 0.0, 0.0) / 255.0;\n  }\n\n  highp vec4 c = vec4(0,0,0,0);\n\n  //Compute exponent and mantissa\n  highp float e = floor(log2(av));\n  highp float m = av * pow(2.0, -e) - 1.0;\n  \n  //Unpack mantissa\n  c[1] = floor(128.0 * m);\n  m -= c[1] / 128.0;\n  c[2] = floor(32768.0 * m);\n  m -= c[2] / 32768.0;\n  c[3] = floor(8388608.0 * m);\n  \n  //Unpack exponent\n  highp float ebias = e + 127.0;\n  c[0] = floor(ebias / 2.0);\n  ebias -= c[0] * 2.0;\n  c[1] += floor(ebias) * 128.0; \n\n  //Unpack sign bit\n  c[0] += 128.0 * step(0.0, -v);\n\n  //Scale back to range\n  return c / 255.0;\n}\n\nuniform float pickId;\nuniform vec3 clipBounds[2];\n\nvarying vec3 worldPosition;\nvarying float pixelArcLength;\nvarying vec4 fragColor;\n\nvoid main() {\n  if(any(lessThan(worldPosition, clipBounds[0])) || any(greaterThan(worldPosition, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId/255.0, encode_float_1540259130(pixelArcLength).xyz);\n}"]),l=[{name:"position",type:"vec3"},{name:"nextPosition",type:"vec3"},{name:"arcLength",type:"float"},{name:"lineWidth",type:"float"},{name:"color",type:"vec4"}];r.createShader=function(t){return i(t,a,o,null,l)},r.createPickShader=function(t){return i(t,a,s,null,l)}},{"gl-shader":220,glslify:253}],177:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl||t.scene&&t.scene.gl,r=u(e);r.attributes.position.location=0,r.attributes.nextPosition.location=1,r.attributes.arcLength.location=2,r.attributes.lineWidth.location=3,r.attributes.color.location=4;var o=f(e);o.attributes.position.location=0,o.attributes.nextPosition.location=1,o.attributes.arcLength.location=2,o.attributes.lineWidth.location=3,o.attributes.color.location=4;for(var s=n(e),c=i(e,[{buffer:s,size:3,offset:0,stride:48},{buffer:s,size:3,offset:12,stride:48},{buffer:s,size:1,offset:24,stride:48},{buffer:s,size:1,offset:28,stride:48},{buffer:s,size:4,offset:32,stride:48}]),h=l(new Array(1024),[256,1,4]),d=0;d<1024;++d)h.data[d]=255;var p=a(e,h);p.wrap=e.REPEAT;var m=new v(e,r,o,s,c,p);return m.update(t),m};var n=t("gl-buffer"),i=t("gl-vao"),a=t("gl-texture2d"),o=t("glsl-read-float"),s=t("binary-search-bounds"),l=t("ndarray"),c=t("./lib/shaders"),u=c.createShader,f=c.createPickShader,h=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function d(t,e){for(var r=0,n=0;n<3;++n){var i=t[n]-e[n];r+=i*i}return Math.sqrt(r)}function p(t){for(var e=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],r=0;r<3;++r)e[0][r]=Math.max(t[0][r],e[0][r]),e[1][r]=Math.min(t[1][r],e[1][r]);return e}function m(t,e,r,n){this.arcLength=t,this.position=e,this.index=r,this.dataCoordinate=n}function v(t,e,r,n,i,a){this.gl=t,this.shader=e,this.pickShader=r,this.buffer=n,this.vao=i,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.points=[],this.arcLength=[],this.vertexCount=0,this.bounds=[[0,0,0],[0,0,0]],this.pickId=0,this.lineWidth=1,this.texture=a,this.dashScale=1,this.opacity=1,this.dirty=!0,this.pixelRatio=1}var g=v.prototype;g.isTransparent=function(){return this.opacity<1},g.isOpaque=function(){return this.opacity>=1},g.pickSlots=1,g.setPickBase=function(t){this.pickId=t},g.drawTransparent=g.draw=function(t){var e=this.gl,r=this.shader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,clipBounds:p(this.clipBounds),dashTexture:this.texture.bind(),dashScale:this.dashScale/this.arcLength[this.arcLength.length-1],opacity:this.opacity,screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.drawPick=function(t){var e=this.gl,r=this.pickShader,n=this.vao;r.bind(),r.uniforms={model:t.model||h,view:t.view||h,projection:t.projection||h,pickId:this.pickId,clipBounds:p(this.clipBounds),screenShape:[e.drawingBufferWidth,e.drawingBufferHeight],pixelRatio:this.pixelRatio},n.bind(),n.draw(e.TRIANGLE_STRIP,this.vertexCount),n.unbind()},g.update=function(t){var e,r;this.dirty=!0;var n=!!t.connectGaps;"dashScale"in t&&(this.dashScale=t.dashScale),"opacity"in t&&(this.opacity=+t.opacity);var i=t.position||t.positions;if(i){var a=t.color||t.colors||[0,0,0,1],o=t.lineWidth||1,c=[],u=[],f=[],h=0,p=0,m=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],v=!1;t:for(e=1;e<i.length;++e){var g,y,b,x=i[e-1],_=i[e];for(u.push(h),f.push(x.slice()),r=0;r<3;++r){if(isNaN(x[r])||isNaN(_[r])||!isFinite(x[r])||!isFinite(_[r])){if(!n&&c.length>0){for(var w=0;w<24;++w)c.push(c[c.length-12]);p+=2,v=!0}continue t}m[0][r]=Math.min(m[0][r],x[r],_[r]),m[1][r]=Math.max(m[1][r],x[r],_[r])}Array.isArray(a[0])?(g=a[e-1],y=a[e]):g=y=a,3===g.length&&(g=[g[0],g[1],g[2],1]),3===y.length&&(y=[y[0],y[1],y[2],1]),b=Array.isArray(o)?o[e-1]:o;var M=h;if(h+=d(x,_),v){for(r=0;r<2;++r)c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3]);p+=2,v=!1}c.push(x[0],x[1],x[2],_[0],_[1],_[2],M,b,g[0],g[1],g[2],g[3],x[0],x[1],x[2],_[0],_[1],_[2],M,-b,g[0],g[1],g[2],g[3],_[0],_[1],_[2],x[0],x[1],x[2],h,-b,y[0],y[1],y[2],y[3],_[0],_[1],_[2],x[0],x[1],x[2],h,b,y[0],y[1],y[2],y[3]),p+=4}if(this.buffer.update(c),u.push(h),f.push(i[i.length-1].slice()),this.bounds=m,this.vertexCount=p,this.points=f,this.arcLength=u,"dashes"in t){var k=t.dashes.slice();for(k.unshift(0),e=1;e<k.length;++e)k[e]=k[e-1]+k[e];var A=l(new Array(1024),[256,1,4]);for(e=0;e<256;++e){for(r=0;r<4;++r)A.set(e,0,r,0);1&s.le(k,k[k.length-1]*e/255)?A.set(e,0,0,0):A.set(e,0,0,255)}this.texture.setPixels(A)}}},g.dispose=function(){this.shader.dispose(),this.vao.dispose(),this.buffer.dispose()},g.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=o(t.value[0],t.value[1],t.value[2],0),r=s.le(this.arcLength,e);if(r<0)return null;if(r===this.arcLength.length-1)return new m(this.arcLength[this.arcLength.length-1],this.points[this.points.length-1].slice(),r);for(var n=this.points[r],i=this.points[Math.min(r+1,this.points.length-1)],a=(e-this.arcLength[r])/(this.arcLength[r+1]-this.arcLength[r]),l=1-a,c=[0,0,0],u=0;u<3;++u)c[u]=l*n[u]+a*i[u];var f=Math.min(a<.5?r:r+1,this.points.length-1);return new m(e,c,f,this.points[f])}},{"./lib/shaders":176,"binary-search-bounds":70,"gl-buffer":165,"gl-texture2d":233,"gl-vao":237,"glsl-read-float":244,ndarray:439}],178:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r*a-i*n;return o?(o=1/o,t[0]=a*o,t[1]=-n*o,t[2]=-i*o,t[3]=r*o,t):null}},{}],179:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=u*o-s*c,h=-u*a+s*l,d=c*a-o*l,p=r*f+n*h+i*d;return p?(p=1/p,t[0]=f*p,t[1]=(-u*n+i*c)*p,t[2]=(s*n-i*o)*p,t[3]=h*p,t[4]=(u*r-i*l)*p,t[5]=(-s*r+i*a)*p,t[6]=d*p,t[7]=(-c*r+n*l)*p,t[8]=(o*r-n*a)*p,t):null}},{}],180:[function(t,e,r){e.exports=function(t){var e=new Float32Array(16);return e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],e[4]=t[4],e[5]=t[5],e[6]=t[6],e[7]=t[7],e[8]=t[8],e[9]=t[9],e[10]=t[10],e[11]=t[11],e[12]=t[12],e[13]=t[13],e[14]=t[14],e[15]=t[15],e}},{}],181:[function(t,e,r){e.exports=function(){var t=new Float32Array(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],182:[function(t,e,r){e.exports=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)}},{}],183:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],184:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t}},{}],185:[function(t,e,r){e.exports=function(t){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t}},{}],186:[function(t,e,r){e.exports=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t}},{}],187:[function(t,e,r){var n=t("./identity");e.exports=function(t,e,r,i){var a,o,s,l,c,u,f,h,d,p,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<1e-6&&Math.abs(v-w)<1e-6&&Math.abs(g-M)<1e-6)return n(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t}},{"./identity":185}],188:[function(t,e,r){e.exports=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=e[6],u=e[7],f=e[8],h=e[9],d=e[10],p=e[11],m=e[12],v=e[13],g=e[14],y=e[15],b=r[0],x=r[1],_=r[2],w=r[3];return t[0]=b*n+x*s+_*f+w*m,t[1]=b*i+x*l+_*h+w*v,t[2]=b*a+x*c+_*d+w*g,t[3]=b*o+x*u+_*p+w*y,b=r[4],x=r[5],_=r[6],w=r[7],t[4]=b*n+x*s+_*f+w*m,t[5]=b*i+x*l+_*h+w*v,t[6]=b*a+x*c+_*d+w*g,t[7]=b*o+x*u+_*p+w*y,b=r[8],x=r[9],_=r[10],w=r[11],t[8]=b*n+x*s+_*f+w*m,t[9]=b*i+x*l+_*h+w*v,t[10]=b*a+x*c+_*d+w*g,t[11]=b*o+x*u+_*p+w*y,b=r[12],x=r[13],_=r[14],w=r[15],t[12]=b*n+x*s+_*f+w*m,t[13]=b*i+x*l+_*h+w*v,t[14]=b*a+x*c+_*d+w*g,t[15]=b*o+x*u+_*p+w*y,t}},{}],189:[function(t,e,r){e.exports=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t}},{}],190:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w,M,k,A,T,E,S=n[0],L=n[1],C=n[2],P=Math.sqrt(S*S+L*L+C*C);if(Math.abs(P)<1e-6)return null;S*=P=1/P,L*=P,C*=P,i=Math.sin(r),a=Math.cos(r),o=1-a,s=e[0],l=e[1],c=e[2],u=e[3],f=e[4],h=e[5],d=e[6],p=e[7],m=e[8],v=e[9],g=e[10],y=e[11],b=S*S*o+a,x=L*S*o+C*i,_=C*S*o-L*i,w=S*L*o-C*i,M=L*L*o+a,k=C*L*o+S*i,A=S*C*o+L*i,T=L*C*o-S*i,E=C*C*o+a,t[0]=s*b+f*x+m*_,t[1]=l*b+h*x+v*_,t[2]=c*b+d*x+g*_,t[3]=u*b+p*x+y*_,t[4]=s*w+f*M+m*k,t[5]=l*w+h*M+v*k,t[6]=c*w+d*M+g*k,t[7]=u*w+p*M+y*k,t[8]=s*A+f*T+m*E,t[9]=l*A+h*T+v*E,t[10]=c*A+d*T+g*E,t[11]=u*A+p*T+y*E,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t}},{}],191:[function(t,e,r){e.exports=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t}},{}],192:[function(t,e,r){e.exports=function(t,e,r){var 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n=function(t){if(t&&t.__esModule)return t;var e={};if(null!=t)for(var r in t)Object.prototype.hasOwnProperty.call(t,r)&&(e[r]=t[r]);return e.default=t,e}(r(0));function i(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=e[4],l=e[5],c=r[0],u=r[1],f=r[2],h=r[3],d=r[4],p=r[5];return t[0]=n*c+a*u,t[1]=i*c+o*u,t[2]=n*f+a*h,t[3]=i*f+o*h,t[4]=n*d+a*p+s,t[5]=i*d+o*p+l,t}function a(t,e,r){return t[0]=e[0]-r[0],t[1]=e[1]-r[1],t[2]=e[2]-r[2],t[3]=e[3]-r[3],t[4]=e[4]-r[4],t[5]=e[5]-r[5],t}e.mul=i,e.sub=a},function(t,e,r){"use strict";Object.defineProperty(e,"__esModule",{value:!0}),e.sub=e.mul=void 0,e.create=function(){var t=new n.ARRAY_TYPE(16);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.clone=function(t){var e=new n.ARRAY_TYPE(16);return 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r=e[1],n=e[2],i=e[3],a=e[6],o=e[7],s=e[11];t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=r,t[6]=e[9],t[7]=e[13],t[8]=n,t[9]=a,t[11]=e[14],t[12]=i,t[13]=o,t[14]=s}else t[0]=e[0],t[1]=e[4],t[2]=e[8],t[3]=e[12],t[4]=e[1],t[5]=e[5],t[6]=e[9],t[7]=e[13],t[8]=e[2],t[9]=e[6],t[10]=e[10],t[11]=e[14],t[12]=e[3],t[13]=e[7],t[14]=e[11],t[15]=e[15];return t},e.invert=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15],y=r*s-n*o,b=r*l-i*o,x=r*c-a*o,_=n*l-i*s,w=n*c-a*s,M=i*c-a*l,k=u*m-f*p,A=u*v-h*p,T=u*g-d*p,E=f*v-h*m,S=f*g-d*m,L=h*g-d*v,C=y*L-b*S+x*E+_*T-w*A+M*k;if(!C)return null;return C=1/C,t[0]=(s*L-l*S+c*E)*C,t[1]=(i*S-n*L-a*E)*C,t[2]=(m*M-v*w+g*_)*C,t[3]=(h*w-f*M-d*_)*C,t[4]=(l*T-o*L-c*A)*C,t[5]=(r*L-i*T+a*A)*C,t[6]=(v*x-p*M-g*b)*C,t[7]=(u*M-h*x+d*b)*C,t[8]=(o*S-s*T+c*k)*C,t[9]=(n*T-r*S-a*k)*C,t[10]=(p*w-m*x+g*y)*C,t[11]=(f*x-u*w-d*y)*C,t[12]=(s*A-o*E-l*k)*C,t[13]=(r*E-n*A+i*k)*C,t[14]=(m*b-p*_-v*y)*C,t[15]=(u*_-f*b+h*y)*C,t},e.adjoint=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=e[4],s=e[5],l=e[6],c=e[7],u=e[8],f=e[9],h=e[10],d=e[11],p=e[12],m=e[13],v=e[14],g=e[15];return t[0]=s*(h*g-d*v)-f*(l*g-c*v)+m*(l*d-c*h),t[1]=-(n*(h*g-d*v)-f*(i*g-a*v)+m*(i*d-a*h)),t[2]=n*(l*g-c*v)-s*(i*g-a*v)+m*(i*c-a*l),t[3]=-(n*(l*d-c*h)-s*(i*d-a*h)+f*(i*c-a*l)),t[4]=-(o*(h*g-d*v)-u*(l*g-c*v)+p*(l*d-c*h)),t[5]=r*(h*g-d*v)-u*(i*g-a*v)+p*(i*d-a*h),t[6]=-(r*(l*g-c*v)-o*(i*g-a*v)+p*(i*c-a*l)),t[7]=r*(l*d-c*h)-o*(i*d-a*h)+u*(i*c-a*l),t[8]=o*(f*g-d*m)-u*(s*g-c*m)+p*(s*d-c*f),t[9]=-(r*(f*g-d*m)-u*(n*g-a*m)+p*(n*d-a*f)),t[10]=r*(s*g-c*m)-o*(n*g-a*m)+p*(n*c-a*s),t[11]=-(r*(s*d-c*f)-o*(n*d-a*f)+u*(n*c-a*s)),t[12]=-(o*(f*v-h*m)-u*(s*v-l*m)+p*(s*h-l*f)),t[13]=r*(f*v-h*m)-u*(n*v-i*m)+p*(n*h-i*f),t[14]=-(r*(s*v-l*m)-o*(n*v-i*m)+p*(n*l-i*s)),t[15]=r*(s*h-l*f)-o*(n*h-i*f)+u*(n*l-i*s),t},e.determinant=function(t){var e=t[0],r=t[1],n=t[2],i=t[3],a=t[4],o=t[5],s=t[6],l=t[7],c=t[8],u=t[9],f=t[10],h=t[11],d=t[12],p=t[13],m=t[14],v=t[15];return(e*o-r*a)*(f*v-h*m)-(e*s-n*a)*(u*v-h*p)+(e*l-i*a)*(u*m-f*p)+(r*s-n*o)*(c*v-h*d)-(r*l-i*o)*(c*m-f*d)+(n*l-i*s)*(c*p-u*d)},e.multiply=i,e.translate=function(t,e,r){var n=r[0],i=r[1],a=r[2],o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0;e===t?(t[12]=e[0]*n+e[4]*i+e[8]*a+e[12],t[13]=e[1]*n+e[5]*i+e[9]*a+e[13],t[14]=e[2]*n+e[6]*i+e[10]*a+e[14],t[15]=e[3]*n+e[7]*i+e[11]*a+e[15]):(o=e[0],s=e[1],l=e[2],c=e[3],u=e[4],f=e[5],h=e[6],d=e[7],p=e[8],m=e[9],v=e[10],g=e[11],t[0]=o,t[1]=s,t[2]=l,t[3]=c,t[4]=u,t[5]=f,t[6]=h,t[7]=d,t[8]=p,t[9]=m,t[10]=v,t[11]=g,t[12]=o*n+u*i+p*a+e[12],t[13]=s*n+f*i+m*a+e[13],t[14]=l*n+h*i+v*a+e[14],t[15]=c*n+d*i+g*a+e[15]);return t},e.scale=function(t,e,r){var n=r[0],i=r[1],a=r[2];return t[0]=e[0]*n,t[1]=e[1]*n,t[2]=e[2]*n,t[3]=e[3]*n,t[4]=e[4]*i,t[5]=e[5]*i,t[6]=e[6]*i,t[7]=e[7]*i,t[8]=e[8]*a,t[9]=e[9]*a,t[10]=e[10]*a,t[11]=e[11]*a,t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15],t},e.rotate=function(t,e,r,i){var a=i[0],o=i[1],s=i[2],l=Math.sqrt(a*a+o*o+s*s),c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=void 0,v=void 0,g=void 0,y=void 0,b=void 0,x=void 0,_=void 0,w=void 0,M=void 0,k=void 0,A=void 0,T=void 0,E=void 0,S=void 0,L=void 0,C=void 0,P=void 0,z=void 0;if(Math.abs(l)<n.EPSILON)return null;a*=l=1/l,o*=l,s*=l,c=Math.sin(r),u=Math.cos(r),f=1-u,h=e[0],d=e[1],p=e[2],m=e[3],v=e[4],g=e[5],y=e[6],b=e[7],x=e[8],_=e[9],w=e[10],M=e[11],k=a*a*f+u,A=o*a*f+s*c,T=s*a*f-o*c,E=a*o*f-s*c,S=o*o*f+u,L=s*o*f+a*c,C=a*s*f+o*c,P=o*s*f-a*c,z=s*s*f+u,t[0]=h*k+v*A+x*T,t[1]=d*k+g*A+_*T,t[2]=p*k+y*A+w*T,t[3]=m*k+b*A+M*T,t[4]=h*E+v*S+x*L,t[5]=d*E+g*S+_*L,t[6]=p*E+y*S+w*L,t[7]=m*E+b*S+M*L,t[8]=h*C+v*P+x*z,t[9]=d*C+g*P+_*z,t[10]=p*C+y*P+w*z,t[11]=m*C+b*P+M*z,e!==t&&(t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t},e.rotateX=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[4],o=e[5],s=e[6],l=e[7],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=e[3],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[4]=a*i+c*n,t[5]=o*i+u*n,t[6]=s*i+f*n,t[7]=l*i+h*n,t[8]=c*i-a*n,t[9]=u*i-o*n,t[10]=f*i-s*n,t[11]=h*i-l*n,t},e.rotateY=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[8],u=e[9],f=e[10],h=e[11];e!==t&&(t[4]=e[4],t[5]=e[5],t[6]=e[6],t[7]=e[7],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i-c*n,t[1]=o*i-u*n,t[2]=s*i-f*n,t[3]=l*i-h*n,t[8]=a*n+c*i,t[9]=o*n+u*i,t[10]=s*n+f*i,t[11]=l*n+h*i,t},e.rotateZ=function(t,e,r){var n=Math.sin(r),i=Math.cos(r),a=e[0],o=e[1],s=e[2],l=e[3],c=e[4],u=e[5],f=e[6],h=e[7];e!==t&&(t[8]=e[8],t[9]=e[9],t[10]=e[10],t[11]=e[11],t[12]=e[12],t[13]=e[13],t[14]=e[14],t[15]=e[15]);return t[0]=a*i+c*n,t[1]=o*i+u*n,t[2]=s*i+f*n,t[3]=l*i+h*n,t[4]=c*i-a*n,t[5]=u*i-o*n,t[6]=f*i-s*n,t[7]=h*i-l*n,t},e.fromTranslation=function(t,e){return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=e[0],t[13]=e[1],t[14]=e[2],t[15]=1,t},e.fromScaling=function(t,e){return t[0]=e[0],t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=e[1],t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=e[2],t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotation=function(t,e,r){var i=r[0],a=r[1],o=r[2],s=Math.sqrt(i*i+a*a+o*o),l=void 0,c=void 0,u=void 0;if(Math.abs(s)<n.EPSILON)return null;return i*=s=1/s,a*=s,o*=s,l=Math.sin(e),c=Math.cos(e),u=1-c,t[0]=i*i*u+c,t[1]=a*i*u+o*l,t[2]=o*i*u-a*l,t[3]=0,t[4]=i*a*u-o*l,t[5]=a*a*u+c,t[6]=o*a*u+i*l,t[7]=0,t[8]=i*o*u+a*l,t[9]=a*o*u-i*l,t[10]=o*o*u+c,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromXRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=1,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=n,t[6]=r,t[7]=0,t[8]=0,t[9]=-r,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromYRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=0,t[2]=-r,t[3]=0,t[4]=0,t[5]=1,t[6]=0,t[7]=0,t[8]=r,t[9]=0,t[10]=n,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromZRotation=function(t,e){var r=Math.sin(e),n=Math.cos(e);return t[0]=n,t[1]=r,t[2]=0,t[3]=0,t[4]=-r,t[5]=n,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=1,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.fromRotationTranslation=function(t,e,r){var n=e[0],i=e[1],a=e[2],o=e[3],s=n+n,l=i+i,c=a+a,u=n*s,f=n*l,h=n*c,d=i*l,p=i*c,m=a*c,v=o*s,g=o*l,y=o*c;return t[0]=1-(d+m),t[1]=f+y,t[2]=h-g,t[3]=0,t[4]=f-y,t[5]=1-(u+m),t[6]=p+v,t[7]=0,t[8]=h+g,t[9]=p-v,t[10]=1-(u+d),t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.getTranslation=function(t,e){return t[0]=e[12],t[1]=e[13],t[2]=e[14],t},e.getScaling=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[4],o=e[5],s=e[6],l=e[8],c=e[9],u=e[10];return t[0]=Math.sqrt(r*r+n*n+i*i),t[1]=Math.sqrt(a*a+o*o+s*s),t[2]=Math.sqrt(l*l+c*c+u*u),t},e.getRotation=function(t,e){var r=e[0]+e[5]+e[10],n=0;r>0?(n=2*Math.sqrt(r+1),t[3]=.25*n,t[0]=(e[6]-e[9])/n,t[1]=(e[8]-e[2])/n,t[2]=(e[1]-e[4])/n):e[0]>e[5]&e[0]>e[10]?(n=2*Math.sqrt(1+e[0]-e[5]-e[10]),t[3]=(e[6]-e[9])/n,t[0]=.25*n,t[1]=(e[1]+e[4])/n,t[2]=(e[8]+e[2])/n):e[5]>e[10]?(n=2*Math.sqrt(1+e[5]-e[0]-e[10]),t[3]=(e[8]-e[2])/n,t[0]=(e[1]+e[4])/n,t[1]=.25*n,t[2]=(e[6]+e[9])/n):(n=2*Math.sqrt(1+e[10]-e[0]-e[5]),t[3]=(e[1]-e[4])/n,t[0]=(e[8]+e[2])/n,t[1]=(e[6]+e[9])/n,t[2]=.25*n);return t},e.fromRotationTranslationScale=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=e[3],l=i+i,c=a+a,u=o+o,f=i*l,h=i*c,d=i*u,p=a*c,m=a*u,v=o*u,g=s*l,y=s*c,b=s*u,x=n[0],_=n[1],w=n[2];return t[0]=(1-(p+v))*x,t[1]=(h+b)*x,t[2]=(d-y)*x,t[3]=0,t[4]=(h-b)*_,t[5]=(1-(f+v))*_,t[6]=(m+g)*_,t[7]=0,t[8]=(d+y)*w,t[9]=(m-g)*w,t[10]=(1-(f+p))*w,t[11]=0,t[12]=r[0],t[13]=r[1],t[14]=r[2],t[15]=1,t},e.fromRotationTranslationScaleOrigin=function(t,e,r,n,i){var a=e[0],o=e[1],s=e[2],l=e[3],c=a+a,u=o+o,f=s+s,h=a*c,d=a*u,p=a*f,m=o*u,v=o*f,g=s*f,y=l*c,b=l*u,x=l*f,_=n[0],w=n[1],M=n[2],k=i[0],A=i[1],T=i[2];return t[0]=(1-(m+g))*_,t[1]=(d+x)*_,t[2]=(p-b)*_,t[3]=0,t[4]=(d-x)*w,t[5]=(1-(h+g))*w,t[6]=(v+y)*w,t[7]=0,t[8]=(p+b)*M,t[9]=(v-y)*M,t[10]=(1-(h+m))*M,t[11]=0,t[12]=r[0]+k-(t[0]*k+t[4]*A+t[8]*T),t[13]=r[1]+A-(t[1]*k+t[5]*A+t[9]*T),t[14]=r[2]+T-(t[2]*k+t[6]*A+t[10]*T),t[15]=1,t},e.fromQuat=function(t,e){var r=e[0],n=e[1],i=e[2],a=e[3],o=r+r,s=n+n,l=i+i,c=r*o,u=n*o,f=n*s,h=i*o,d=i*s,p=i*l,m=a*o,v=a*s,g=a*l;return t[0]=1-f-p,t[1]=u+g,t[2]=h-v,t[3]=0,t[4]=u-g,t[5]=1-c-p,t[6]=d+m,t[7]=0,t[8]=h+v,t[9]=d-m,t[10]=1-c-f,t[11]=0,t[12]=0,t[13]=0,t[14]=0,t[15]=1,t},e.frustum=function(t,e,r,n,i,a,o){var s=1/(r-e),l=1/(i-n),c=1/(a-o);return t[0]=2*a*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=2*a*l,t[6]=0,t[7]=0,t[8]=(r+e)*s,t[9]=(i+n)*l,t[10]=(o+a)*c,t[11]=-1,t[12]=0,t[13]=0,t[14]=o*a*2*c,t[15]=0,t},e.perspective=function(t,e,r,n,i){var a=1/Math.tan(e/2),o=1/(n-i);return t[0]=a/r,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=a,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=(i+n)*o,t[11]=-1,t[12]=0,t[13]=0,t[14]=2*i*n*o,t[15]=0,t},e.perspectiveFromFieldOfView=function(t,e,r,n){var i=Math.tan(e.upDegrees*Math.PI/180),a=Math.tan(e.downDegrees*Math.PI/180),o=Math.tan(e.leftDegrees*Math.PI/180),s=Math.tan(e.rightDegrees*Math.PI/180),l=2/(o+s),c=2/(i+a);return t[0]=l,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=c,t[6]=0,t[7]=0,t[8]=-(o-s)*l*.5,t[9]=(i-a)*c*.5,t[10]=n/(r-n),t[11]=-1,t[12]=0,t[13]=0,t[14]=n*r/(r-n),t[15]=0,t},e.ortho=function(t,e,r,n,i,a,o){var s=1/(e-r),l=1/(n-i),c=1/(a-o);return t[0]=-2*s,t[1]=0,t[2]=0,t[3]=0,t[4]=0,t[5]=-2*l,t[6]=0,t[7]=0,t[8]=0,t[9]=0,t[10]=2*c,t[11]=0,t[12]=(e+r)*s,t[13]=(i+n)*l,t[14]=(o+a)*c,t[15]=1,t},e.lookAt=function(t,e,r,i){var a=void 0,o=void 0,s=void 0,l=void 0,c=void 0,u=void 0,f=void 0,h=void 0,d=void 0,p=void 0,m=e[0],v=e[1],g=e[2],y=i[0],b=i[1],x=i[2],_=r[0],w=r[1],M=r[2];if(Math.abs(m-_)<n.EPSILON&&Math.abs(v-w)<n.EPSILON&&Math.abs(g-M)<n.EPSILON)return mat4.identity(t);f=m-_,h=v-w,d=g-M,p=1/Math.sqrt(f*f+h*h+d*d),a=b*(d*=p)-x*(h*=p),o=x*(f*=p)-y*d,s=y*h-b*f,(p=Math.sqrt(a*a+o*o+s*s))?(a*=p=1/p,o*=p,s*=p):(a=0,o=0,s=0);l=h*s-d*o,c=d*a-f*s,u=f*o-h*a,(p=Math.sqrt(l*l+c*c+u*u))?(l*=p=1/p,c*=p,u*=p):(l=0,c=0,u=0);return t[0]=a,t[1]=l,t[2]=f,t[3]=0,t[4]=o,t[5]=c,t[6]=h,t[7]=0,t[8]=s,t[9]=u,t[10]=d,t[11]=0,t[12]=-(a*m+o*v+s*g),t[13]=-(l*m+c*v+u*g),t[14]=-(f*m+h*v+d*g),t[15]=1,t},e.targetTo=function(t,e,r,n){var i=e[0],a=e[1],o=e[2],s=n[0],l=n[1],c=n[2],u=i-r[0],f=a-r[1],h=o-r[2],d=u*u+f*f+h*h;d>0&&(d=1/Math.sqrt(d),u*=d,f*=d,h*=d);var p=l*h-c*f,m=c*u-s*h,v=s*f-l*u;return t[0]=p,t[1]=m,t[2]=v,t[3]=0,t[4]=f*v-h*m,t[5]=h*p-u*v,t[6]=u*m-f*p,t[7]=0,t[8]=u,t[9]=f,t[10]=h,t[11]=0,t[12]=i,t[13]=a,t[14]=o,t[15]=1,t},e.str=function(t){return"mat4("+t[0]+", "+t[1]+", "+t[2]+", "+t[3]+", "+t[4]+", "+t[5]+", "+t[6]+", "+t[7]+", "+t[8]+", "+t[9]+", "+t[10]+", "+t[11]+", "+t[12]+", "+t[13]+", "+t[14]+", "+t[15]+")"},e.frob=function(t){return Math.sqrt(Math.pow(t[0],2)+Math.pow(t[1],2)+Math.pow(t[2],2)+Math.pow(t[3],2)+Math.pow(t[4],2)+Math.pow(t[5],2)+Math.pow(t[6],2)+Math.pow(t[7],2)+Math.pow(t[8],2)+Math.pow(t[9],2)+Math.pow(t[10],2)+Math.pow(t[11],2)+Math.pow(t[12],2)+Math.pow(t[13],2)+Math.pow(t[14],2)+Math.pow(t[15],2))},e.add=function(t,e,r){return t[0]=e[0]+r[0],t[1]=e[1]+r[1],t[2]=e[2]+r[2],t[3]=e[3]+r[3],t[4]=e[4]+r[4],t[5]=e[5]+r[5],t[6]=e[6]+r[6],t[7]=e[7]+r[7],t[8]=e[8]+r[8],t[9]=e[9]+r[9],t[10]=e[10]+r[10],t[11]=e[11]+r[11],t[12]=e[12]+r[12],t[13]=e[13]+r[13],t[14]=e[14]+r[14],t[15]=e[15]+r[15],t},e.subtract=a,e.multiplyScalar=function(t,e,r){return t[0]=e[0]*r,t[1]=e[1]*r,t[2]=e[2]*r,t[3]=e[3]*r,t[4]=e[4]*r,t[5]=e[5]*r,t[6]=e[6]*r,t[7]=e[7]*r,t[8]=e[8]*r,t[9]=e[9]*r,t[10]=e[10]*r,t[11]=e[11]*r,t[12]=e[12]*r,t[13]=e[13]*r,t[14]=e[14]*r,t[15]=e[15]*r,t},e.multiplyScalarAndAdd=function(t,e,r,n){return t[0]=e[0]+r[0]*n,t[1]=e[1]+r[1]*n,t[2]=e[2]+r[2]*n,t[3]=e[3]+r[3]*n,t[4]=e[4]+r[4]*n,t[5]=e[5]+r[5]*n,t[6]=e[6]+r[6]*n,t[7]=e[7]+r[7]*n,t[8]=e[8]+r[8]*n,t[9]=e[9]+r[9]*n,t[10]=e[10]+r[10]*n,t[11]=e[11]+r[11]*n,t[12]=e[12]+r[12]*n,t[13]=e[13]+r[13]*n,t[14]=e[14]+r[14]*n,t[15]=e[15]+r[15]*n,t},e.exactEquals=function(t,e){return t[0]===e[0]&&t[1]===e[1]&&t[2]===e[2]&&t[3]===e[3]&&t[4]===e[4]&&t[5]===e[5]&&t[6]===e[6]&&t[7]===e[7]&&t[8]===e[8]&&t[9]===e[9]&&t[10]===e[10]&&t[11]===e[11]&&t[12]===e[12]&&t[13]===e[13]&&t[14]===e[14]&&t[15]===e[15]},e.equals=function(t,e){var r=t[0],i=t[1],a=t[2],o=t[3],s=t[4],l=t[5],c=t[6],u=t[7],f=t[8],h=t[9],d=t[10],p=t[11],m=t[12],v=t[13],g=t[14],y=t[15],b=e[0],x=e[1],_=e[2],w=e[3],M=e[4],k=e[5],A=e[6],T=e[7],E=e[8],S=e[9],L=e[10],C=e[11],P=e[12],z=e[13],O=e[14],D=e[15];return Math.abs(r-b)<=n.EPSILON*Math.max(1,Math.abs(r),Math.abs(b))&&Math.abs(i-x)<=n.EPSILON*Math.max(1,Math.abs(i),Math.abs(x))&&Math.abs(a-_)<=n.EPSILON*Math.max(1,Math.abs(a),Math.abs(_))&&Math.abs(o-w)<=n.EPSILON*Math.max(1,Math.abs(o),Math.abs(w))&&Math.abs(s-M)<=n.EPSILON*Math.max(1,Math.abs(s),Math.abs(M))&&Math.abs(l-k)<=n.EPSILON*Math.max(1,Math.abs(l),Math.abs(k))&&Math.abs(c-A)<=n.EPSILON*Math.max(1,Math.abs(c),Math.abs(A))&&Math.abs(u-T)<=n.EPSILON*Math.max(1,Math.abs(u),Math.abs(T))&&Math.abs(f-E)<=n.EPSILON*Math.max(1,Math.abs(f),Math.abs(E))&&Math.abs(h-S)<=n.EPSILON*Math.max(1,Math.abs(h),Math.abs(S))&&Math.abs(d-L)<=n.EPSILON*Math.max(1,Math.abs(d),Math.abs(L))&&Math.abs(p-C)<=n.EPSILON*Math.max(1,Math.abs(p),Math.abs(C))&&Math.abs(m-P)<=n.EPSILON*Math.max(1,Math.abs(m),Math.abs(P))&&Math.abs(v-z)<=n.EPSILON*Math.max(1,Math.abs(v),Math.abs(z))&&Math.abs(g-O)<=n.EPSILON*Math.max(1,Math.abs(g),Math.abs(O))&&Math.abs(y-D)<=n.EPSILON*Math.max(1,Math.abs(y),Math.abs(D))};var 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f_normal\n           , f_lightDirection\n           , f_eyeDirection\n           , f_data;\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(f_normal);\n  vec3 L = normalize(f_lightDirection);\n  vec3 V = normalize(f_eyeDirection);\n  \n  if(!gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = cookTorranceSpecular(L, V, N, roughness, fresnel);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  vec4 surfaceColor = f_color * texture2D(texture, f_uv);\n  vec4 litColor = surfaceColor.a * vec4(diffuse * surfaceColor.rgb + kspecular * vec3(1,1,1) * specular,  1.0);\n\n  gl_FragColor = litColor * opacity;\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\n\nuniform mat4 model, view, projection;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_color = color;\n  f_data  = position;\n  f_uv    = uv;\n}"]),s=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 clipBounds[2];\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec3 f_data;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(f_data, clipBounds[0])) || \n     any(greaterThan(f_data, clipBounds[1]))) {\n    discard;\n  }\n\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),l=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 uv;\nattribute float pointSize;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position = projection * view * model * vec4(position, 1.0);\n  }\n  gl_PointSize = pointSize;\n  f_color = color;\n  f_uv = uv;\n}"]),c=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D texture;\nuniform float opacity;\n\nvarying vec4 f_color;\nvarying vec2 f_uv;\n\nvoid main() {\n  vec2 pointR = gl_PointCoord.xy - vec2(0.5,0.5);\n  if(dot(pointR, pointR) > 0.25) {\n    discard;\n  }\n  gl_FragColor = f_color * texture2D(texture, f_uv) * opacity;\n}"]),u=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n  f_id        = id;\n  f_position  = position;\n}"]),f=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3  clipBounds[2];\nuniform float pickId;\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(f_position, clipBounds[0])) || \n     any(greaterThan(f_position, clipBounds[1]))) {\n    discard;\n  }\n  gl_FragColor = vec4(pickId, f_id.xyz);\n}"]),h=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3  position;\nattribute float pointSize;\nattribute vec4  id;\n\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec3 f_position;\nvarying vec4 f_id;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || \n     any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    gl_Position  = projection * view * model * vec4(position, 1.0);\n    gl_PointSize = pointSize;\n  }\n  f_id         = id;\n  f_position   = position;\n}"]),d=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\n\nuniform mat4 model, view, projection;\n\nvoid main() {\n  gl_Position = projection * view * model * vec4(position, 1.0);\n}"]),p=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 contourColor;\n\nvoid main() {\n  gl_FragColor = vec4(contourColor,1);\n}\n"]);r.meshShader={vertex:i,fragment:a,attributes:[{name:"position",type:"vec3"},{name:"normal",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.wireShader={vertex:o,fragment:s,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"}]},r.pointShader={vertex:l,fragment:c,attributes:[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"uv",type:"vec2"},{name:"pointSize",type:"float"}]},r.pickShader={vertex:u,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"id",type:"vec4"}]},r.pointPickShader={vertex:h,fragment:f,attributes:[{name:"position",type:"vec3"},{name:"pointSize",type:"float"},{name:"id",type:"vec4"}]},r.contourShader={vertex:d,fragment:p,attributes:[{name:"position",type:"vec3"}]}},{glslify:253}],201:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("normals"),l=t("gl-mat4/multiply"),c=t("gl-mat4/invert"),u=t("ndarray"),f=t("colormap"),h=t("simplicial-complex-contour"),d=t("typedarray-pool"),p=t("./lib/shaders"),m=t("./lib/closest-point"),v=p.meshShader,g=p.wireShader,y=p.pointShader,b=p.pickShader,x=p.pointPickShader,_=p.contourShader,w=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function M(t,e,r,n,i,a,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,M,k,A,T,E){this.gl=t,this.cells=[],this.positions=[],this.intensity=[],this.texture=e,this.dirty=!0,this.triShader=r,this.lineShader=n,this.pointShader=i,this.pickShader=a,this.pointPickShader=o,this.contourShader=s,this.trianglePositions=l,this.triangleColors=u,this.triangleNormals=h,this.triangleUVs=f,this.triangleIds=c,this.triangleVAO=d,this.triangleCount=0,this.lineWidth=1,this.edgePositions=p,this.edgeColors=v,this.edgeUVs=g,this.edgeIds=m,this.edgeVAO=y,this.edgeCount=0,this.pointPositions=b,this.pointColors=_,this.pointUVs=M,this.pointSizes=k,this.pointIds=x,this.pointVAO=A,this.pointCount=0,this.contourLineWidth=1,this.contourPositions=T,this.contourVAO=E,this.contourCount=0,this.contourColor=[0,0,0],this.contourEnable=!0,this.pickId=1,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.lightPosition=[1e5,1e5,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.opacity=1,this._model=w,this._view=w,this._projection=w,this._resolution=[1,1]}var k=M.prototype;function A(t){var e=n(t,y.vertex,y.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.pointSize.location=4,e}function T(t){var e=n(t,b.vertex,b.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e}function E(t){var e=n(t,x.vertex,x.fragment);return e.attributes.position.location=0,e.attributes.id.location=1,e.attributes.pointSize.location=4,e}function S(t){var e=n(t,_.vertex,_.fragment);return e.attributes.position.location=0,e}k.isOpaque=function(){return this.opacity>=1},k.isTransparent=function(){return this.opacity<1},k.pickSlots=1,k.setPickBase=function(t){this.pickId=t},k.highlight=function(t){if(t&&this.contourEnable){for(var e=h(this.cells,this.intensity,t.intensity),r=e.cells,n=e.vertexIds,i=e.vertexWeights,a=r.length,o=d.mallocFloat32(6*a),s=0,l=0;l<a;++l)for(var c=r[l],u=0;u<2;++u){var f=c[0];2===c.length&&(f=c[u]);for(var p=n[f][0],m=n[f][1],v=i[f],g=1-v,y=this.positions[p],b=this.positions[m],x=0;x<3;++x)o[s++]=v*y[x]+g*b[x]}this.contourCount=s/3|0,this.contourPositions.update(o.subarray(0,s)),d.free(o)}else this.contourCount=0},k.update=function(t){t=t||{};var e=this.gl;this.dirty=!0,"contourEnable"in t&&(this.contourEnable=t.contourEnable),"contourColor"in t&&(this.contourColor=t.contourColor),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"lightPosition"in t&&(this.lightPosition=t.lightPosition),"opacity"in t&&(this.opacity=t.opacity),"ambient"in t&&(this.ambientLight=t.ambient),"diffuse"in t&&(this.diffuseLight=t.diffuse),"specular"in t&&(this.specularLight=t.specular),"roughness"in t&&(this.roughness=t.roughness),"fresnel"in t&&(this.fresnel=t.fresnel),t.texture?(this.texture.dispose(),this.texture=o(e,t.texture)):t.colormap&&(this.texture.shape=[256,256],this.texture.minFilter=e.LINEAR_MIPMAP_LINEAR,this.texture.magFilter=e.LINEAR,this.texture.setPixels(function(t){for(var e=f({colormap:t,nshades:256,format:"rgba"}),r=new Uint8Array(1024),n=0;n<256;++n){for(var i=e[n],a=0;a<3;++a)r[4*n+a]=i[a];r[4*n+3]=255*i[3]}return u(r,[256,256,4],[4,0,1])}(t.colormap)),this.texture.generateMipmap());var r=t.cells,n=t.positions;if(n&&r){var i=[],a=[],l=[],c=[],h=[],d=[],p=[],m=[],v=[],g=[],y=[],b=[],x=[],_=[];this.cells=r,this.positions=n;var w=t.vertexNormals,M=t.cellNormals,k=void 0===t.vertexNormalsEpsilon?1e-6:t.vertexNormalsEpsilon,A=void 0===t.faceNormalsEpsilon?1e-6:t.faceNormalsEpsilon;t.useFacetNormals&&!M&&(M=s.faceNormals(r,n,A)),M||w||(w=s.vertexNormals(r,n,k));var T=t.vertexColors,E=t.cellColors,S=t.meshColor||[1,1,1,1],L=t.vertexUVs,C=t.vertexIntensity,P=t.cellUVs,z=t.cellIntensity,O=1/0,D=-1/0;if(!L&&!P)if(C)if(t.vertexIntensityBounds)O=+t.vertexIntensityBounds[0],D=+t.vertexIntensityBounds[1];else for(var I=0;I<C.length;++I){var R=C[I];O=Math.min(O,R),D=Math.max(D,R)}else if(z)for(I=0;I<z.length;++I){R=z[I];O=Math.min(O,R),D=Math.max(D,R)}else for(I=0;I<n.length;++I){R=n[I][2];O=Math.min(O,R),D=Math.max(D,R)}this.intensity=C||(z?function(t,e,r){for(var n=new Array(e),i=0;i<e;++i)n[i]=0;var a=t.length;for(i=0;i<a;++i)for(var o=t[i],s=0;s<o.length;++s)n[o[s]]=r[i];return n}(r,n.length,z):function(t){for(var e=t.length,r=new Array(e),n=0;n<e;++n)r[n]=t[n][2];return r}(n));var N=t.pointSizes,F=t.pointSize||1;this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(I=0;I<n.length;++I)for(var j=n[I],B=0;B<3;++B)!isNaN(j[B])&&isFinite(j[B])&&(this.bounds[0][B]=Math.min(this.bounds[0][B],j[B]),this.bounds[1][B]=Math.max(this.bounds[1][B],j[B]));var U=0,V=0,q=0;t:for(I=0;I<r.length;++I){var H=r[I];switch(H.length){case 1:for(j=n[Y=H[0]],B=0;B<3;++B)if(isNaN(j[B])||!isFinite(j[B]))continue t;g.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?y.push(W[0],W[1],W[2],1):y.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],b.push(X[0],X[1]),N?x.push(N[Y]):x.push(F),_.push(I),q+=1;break;case 2:for(B=0;B<2;++B){j=n[Y=H[B]];for(var G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t}for(B=0;B<2;++B){j=n[Y=H[B]];d.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?p.push(W[0],W[1],W[2],1):p.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],m.push(X[0],X[1]),v.push(I)}V+=1;break;case 3:for(B=0;B<3;++B)for(j=n[Y=H[B]],G=0;G<3;++G)if(isNaN(j[G])||!isFinite(j[G]))continue t;for(B=0;B<3;++B){var Y,W,X,Z;j=n[Y=H[B]];i.push(j[0],j[1],j[2]),3===(W=T?T[Y]:E?E[I]:S).length?a.push(W[0],W[1],W[2],1):a.push(W[0],W[1],W[2],W[3]),X=L?L[Y]:C?[(C[Y]-O)/(D-O),0]:P?P[I]:z?[(z[I]-O)/(D-O),0]:[(j[2]-O)/(D-O),0],c.push(X[0],X[1]),Z=w?w[Y]:M[I],l.push(Z[0],Z[1],Z[2]),h.push(I)}U+=1}}this.pointCount=q,this.edgeCount=V,this.triangleCount=U,this.pointPositions.update(g),this.pointColors.update(y),this.pointUVs.update(b),this.pointSizes.update(x),this.pointIds.update(new Uint32Array(_)),this.edgePositions.update(d),this.edgeColors.update(p),this.edgeUVs.update(m),this.edgeIds.update(new Uint32Array(v)),this.trianglePositions.update(i),this.triangleColors.update(a),this.triangleUVs.update(c),this.triangleNormals.update(l),this.triangleIds.update(new Uint32Array(h))}},k.drawTransparent=k.draw=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);var s={model:r,view:n,projection:i,clipBounds:a,kambient:this.ambientLight,kdiffuse:this.diffuseLight,kspecular:this.specularLight,roughness:this.roughness,fresnel:this.fresnel,eyePosition:[0,0,0],lightPosition:[0,0,0],opacity:this.opacity,contourColor:this.contourColor,texture:0};this.texture.bind(0);var u=new Array(16);l(u,s.view,s.model),l(u,s.projection,u),c(u,u);for(o=0;o<3;++o)s.eyePosition[o]=u[12+o]/u[15];var f,h=u[15];for(o=0;o<3;++o)h+=this.lightPosition[o]*u[4*o+3];for(o=0;o<3;++o){for(var d=u[12+o],p=0;p<3;++p)d+=u[4*p+o]*this.lightPosition[p];s.lightPosition[o]=d/h}this.triangleCount>0&&((f=this.triShader).bind(),f.uniforms=s,this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind());this.edgeCount>0&&this.lineWidth>0&&((f=this.lineShader).bind(),f.uniforms=s,this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind());this.pointCount>0&&((f=this.pointShader).bind(),f.uniforms=s,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind());this.contourEnable&&this.contourCount>0&&this.contourLineWidth>0&&((f=this.contourShader).bind(),f.uniforms=s,this.contourVAO.bind(),e.drawArrays(e.LINES,0,this.contourCount),this.contourVAO.unbind())},k.drawPick=function(t){t=t||{};for(var e=this.gl,r=t.model||w,n=t.view||w,i=t.projection||w,a=[[-1e6,-1e6,-1e6],[1e6,1e6,1e6]],o=0;o<3;++o)a[0][o]=Math.max(a[0][o],this.clipBounds[0][o]),a[1][o]=Math.min(a[1][o],this.clipBounds[1][o]);this._model=[].slice.call(r),this._view=[].slice.call(n),this._projection=[].slice.call(i),this._resolution=[e.drawingBufferWidth,e.drawingBufferHeight];var s,l={model:r,view:n,projection:i,clipBounds:a,pickId:this.pickId/255};((s=this.pickShader).bind(),s.uniforms=l,this.triangleCount>0&&(this.triangleVAO.bind(),e.drawArrays(e.TRIANGLES,0,3*this.triangleCount),this.triangleVAO.unbind()),this.edgeCount>0&&(this.edgeVAO.bind(),e.lineWidth(this.lineWidth),e.drawArrays(e.LINES,0,2*this.edgeCount),this.edgeVAO.unbind()),this.pointCount>0)&&((s=this.pointPickShader).bind(),s.uniforms=l,this.pointVAO.bind(),e.drawArrays(e.POINTS,0,this.pointCount),this.pointVAO.unbind())},k.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;for(var e=t.value[0]+256*t.value[1]+65536*t.value[2],r=this.cells[e],n=this.positions,i=new Array(r.length),a=0;a<r.length;++a)i[a]=n[r[a]];var o=m(i,[t.coord[0],this._resolution[1]-t.coord[1]],this._model,this._view,this._projection,this._resolution);if(!o)return null;var s=o[2],l=0;for(a=0;a<r.length;++a)l+=s[a]*this.intensity[r[a]];return{position:o[1],index:r[o[0]],cell:r,cellId:e,intensity:l,dataCoordinate:this.positions[r[o[0]]]}},k.dispose=function(){this.texture.dispose(),this.triShader.dispose(),this.lineShader.dispose(),this.pointShader.dispose(),this.pickShader.dispose(),this.pointPickShader.dispose(),this.triangleVAO.dispose(),this.trianglePositions.dispose(),this.triangleColors.dispose(),this.triangleUVs.dispose(),this.triangleNormals.dispose(),this.triangleIds.dispose(),this.edgeVAO.dispose(),this.edgePositions.dispose(),this.edgeColors.dispose(),this.edgeUVs.dispose(),this.edgeIds.dispose(),this.pointVAO.dispose(),this.pointPositions.dispose(),this.pointColors.dispose(),this.pointUVs.dispose(),this.pointSizes.dispose(),this.pointIds.dispose(),this.contourVAO.dispose(),this.contourPositions.dispose(),this.contourShader.dispose()},e.exports=function(t,e){1===arguments.length&&(t=(e=t).gl);var r=function(t){var e=n(t,v.vertex,v.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e.attributes.normal.location=4,e}(t),s=function(t){var e=n(t,g.vertex,g.fragment);return e.attributes.position.location=0,e.attributes.color.location=2,e.attributes.uv.location=3,e}(t),l=A(t),c=T(t),f=E(t),h=S(t),d=o(t,u(new Uint8Array([255,255,255,255]),[1,1,4]));d.generateMipmap(),d.minFilter=t.LINEAR_MIPMAP_LINEAR,d.magFilter=t.LINEAR;var p=i(t),m=i(t),y=i(t),b=i(t),x=i(t),_=a(t,[{buffer:p,type:t.FLOAT,size:3},{buffer:x,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:m,type:t.FLOAT,size:4},{buffer:y,type:t.FLOAT,size:2},{buffer:b,type:t.FLOAT,size:3}]),w=i(t),k=i(t),L=i(t),C=i(t),P=a(t,[{buffer:w,type:t.FLOAT,size:3},{buffer:C,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:k,type:t.FLOAT,size:4},{buffer:L,type:t.FLOAT,size:2}]),z=i(t),O=i(t),D=i(t),I=i(t),R=i(t),N=a(t,[{buffer:z,type:t.FLOAT,size:3},{buffer:R,type:t.UNSIGNED_BYTE,size:4,normalized:!0},{buffer:O,type:t.FLOAT,size:4},{buffer:D,type:t.FLOAT,size:2},{buffer:I,type:t.FLOAT,size:1}]),F=i(t),j=new M(t,d,r,s,l,c,f,h,p,x,m,y,b,_,w,C,k,L,P,z,R,O,D,I,N,F,a(t,[{buffer:F,type:t.FLOAT,size:3}]));return j.update(e),j}},{"./lib/closest-point":199,"./lib/shaders":200,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-shader":220,"gl-texture2d":233,"gl-vao":237,ndarray:439,normals:442,"simplicial-complex-contour":504,"typedarray-pool":534}],202:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[0,0,0,1,1,0,1,1]),s=i(e,a.boxVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawBox=(s=[0,0],l=[0,0],function(t,e,r,n,i){var a=this.plot,o=this.shader,c=a.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,o.uniforms.lo=s,o.uniforms.hi=l,o.uniforms.color=i,c.drawArrays(c.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],203:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,o.gridVert,o.gridFrag),l=i(e,o.tickVert,o.gridFrag);return new s(t,r,a,l)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("binary-search-bounds"),o=t("./shaders");function s(t,e,r,n){this.plot=t,this.vbo=e,this.shader=r,this.tickShader=n,this.ticks=[[],[]]}function l(t,e){return t-e}var c,u,f,h,d,p=s.prototype;p.draw=(c=[0,0],u=[0,0],f=[0,0],function(){for(var t=this.plot,e=this.vbo,r=this.shader,n=this.ticks,i=t.gl,a=t._tickBounds,o=t.dataBox,s=t.viewBox,l=t.gridLineWidth,h=t.gridLineColor,d=t.gridLineEnable,p=t.pixelRatio,m=0;m<2;++m){var v=a[m],g=a[m+2]-v,y=.5*(o[m+2]+o[m]),b=o[m+2]-o[m];u[m]=2*g/b,c[m]=2*(v-y)/b}r.bind(),e.bind(),r.attributes.dataCoord.pointer(),r.uniforms.dataShift=c,r.uniforms.dataScale=u;var x=0;for(m=0;m<2;++m){f[0]=f[1]=0,f[m]=1,r.uniforms.dataAxis=f,r.uniforms.lineWidth=l[m]/(s[m+2]-s[m])*p,r.uniforms.color=h[m];var _=6*n[m].length;d[m]&&_&&i.drawArrays(i.TRIANGLES,x,_),x+=_}}),p.drawTickMarks=function(){var t=[0,0],e=[0,0],r=[1,0],n=[0,1],i=[0,0],o=[0,0];return function(){for(var s=this.plot,c=this.vbo,u=this.tickShader,f=this.ticks,h=s.gl,d=s._tickBounds,p=s.dataBox,m=s.viewBox,v=s.pixelRatio,g=s.screenBox,y=g[2]-g[0],b=g[3]-g[1],x=m[2]-m[0],_=m[3]-m[1],w=0;w<2;++w){var M=d[w],k=d[w+2]-M,A=.5*(p[w+2]+p[w]),T=p[w+2]-p[w];e[w]=2*k/T,t[w]=2*(M-A)/T}e[0]*=x/y,t[0]*=x/y,e[1]*=_/b,t[1]*=_/b,u.bind(),c.bind(),u.attributes.dataCoord.pointer();var E=u.uniforms;E.dataShift=t,E.dataScale=e;var S=s.tickMarkLength,L=s.tickMarkWidth,C=s.tickMarkColor,P=6*f[0].length,z=Math.min(a.ge(f[0],(p[0]-d[0])/(d[2]-d[0]),l),f[0].length),O=Math.min(a.gt(f[0],(p[2]-d[0])/(d[2]-d[0]),l),f[0].length),D=0+6*z,I=6*Math.max(0,O-z),R=Math.min(a.ge(f[1],(p[1]-d[1])/(d[3]-d[1]),l),f[1].length),N=Math.min(a.gt(f[1],(p[3]-d[1])/(d[3]-d[1]),l),f[1].length),F=P+6*R,j=6*Math.max(0,N-R);i[0]=2*(m[0]-S[1])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[1]*v/y,o[1]=L[1]*v/b,j&&(E.color=C[1],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[1]-S[0])/b-1,o[0]=L[0]*v/y,o[1]=S[0]*v/b,I&&(E.color=C[0],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I)),i[0]=2*(m[2]+S[3])/y-1,i[1]=(m[3]+m[1])/b-1,o[0]=S[3]*v/y,o[1]=L[3]*v/b,j&&(E.color=C[3],E.tickScale=o,E.dataAxis=n,E.screenOffset=i,h.drawArrays(h.TRIANGLES,F,j)),i[0]=(m[2]+m[0])/y-1,i[1]=2*(m[3]+S[2])/b-1,o[0]=L[2]*v/y,o[1]=S[2]*v/b,I&&(E.color=C[2],E.tickScale=o,E.dataAxis=r,E.screenOffset=i,h.drawArrays(h.TRIANGLES,D,I))}}(),p.update=(h=[1,1,-1,-1,1,-1],d=[1,-1,1,1,-1,-1],function(t){for(var e=t.ticks,r=t.bounds,n=new Float32Array(18*(e[0].length+e[1].length)),i=(this.plot.zeroLineEnable,0),a=[[],[]],o=0;o<2;++o)for(var s=a[o],l=e[o],c=r[o],u=r[o+2],f=0;f<l.length;++f){var p=(l[f].x-c)/(u-c);s.push(p);for(var m=0;m<6;++m)n[i++]=p,n[i++]=h[m],n[i++]=d[m]}this.ticks=a,this.vbo.update(n)}),p.dispose=function(){this.vbo.dispose(),this.shader.dispose(),this.tickShader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220}],204:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[-1,-1,-1,1,1,-1,1,1]),s=i(e,a.lineVert,a.lineFrag);return new o(t,r,s)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("./shaders");function o(t,e,r){this.plot=t,this.vbo=e,this.shader=r}var s,l,c=o.prototype;c.bind=function(){var t=this.shader;this.vbo.bind(),this.shader.bind(),t.attributes.coord.pointer(),t.uniforms.screenBox=this.plot.screenBox},c.drawLine=(s=[0,0],l=[0,0],function(t,e,r,n,i,a){var o=this.plot,c=this.shader,u=o.gl;s[0]=t,s[1]=e,l[0]=r,l[1]=n,c.uniforms.start=s,c.uniforms.end=l,c.uniforms.width=i*o.pixelRatio,c.uniforms.color=a,u.drawArrays(u.TRIANGLE_STRIP,0,4)}),c.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"gl-buffer":165,"gl-shader":220}],205:[function(t,e,r){"use strict";var n=t("glslify"),i=n(["precision lowp float;\n#define GLSLIFY 1\nuniform vec4 color;\nvoid main() {\n  gl_FragColor = vec4(color.xyz * color.w, color.w);\n}\n"]);e.exports={lineVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 start, end;\nuniform float width;\n\nvec2 perp(vec2 v) {\n  return vec2(v.y, -v.x);\n}\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  vec2 delta = normalize(perp(start - end));\n  vec2 offset = mix(start, end, 0.5 * (coord.y+1.0));\n  gl_Position = vec4(screen(offset + 0.5 * width * delta * coord.x), 0, 1);\n}\n"]),lineFrag:i,textVert:n(["#define GLSLIFY 1\nattribute vec3 textCoordinate;\n\nuniform vec2 dataScale, dataShift, dataAxis, screenOffset, textScale;\nuniform float angle;\n\nvoid main() {\n  float dataOffset  = textCoordinate.z;\n  vec2 glyphOffset  = textCoordinate.xy;\n  mat2 glyphMatrix = mat2(cos(angle), sin(angle), -sin(angle), cos(angle));\n  vec2 screenCoordinate = dataAxis * (dataScale * dataOffset + dataShift) +\n    glyphMatrix * glyphOffset * textScale + screenOffset;\n  gl_Position = vec4(screenCoordinate, 0, 1);\n}\n"]),textFrag:i,gridVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale;\nuniform float lineWidth;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  pos += 10.0 * dataCoord.y * vec2(dataAxis.y, -dataAxis.x) + dataCoord.z * lineWidth;\n  gl_Position = vec4(pos, 0, 1);\n}\n"]),gridFrag:i,boxVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 coord;\n\nuniform vec4 screenBox;\nuniform vec2 lo, hi;\n\nvec2 screen(vec2 v) {\n  return 2.0 * (v - screenBox.xy) / (screenBox.zw - screenBox.xy) - 1.0;\n}\n\nvoid main() {\n  gl_Position = vec4(screen(mix(lo, hi, coord)), 0, 1);\n}\n"]),tickVert:n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 dataCoord;\n\nuniform vec2 dataAxis, dataShift, dataScale, screenOffset, tickScale;\n\nvoid main() {\n  vec2 pos = dataAxis * (dataScale * dataCoord.x + dataShift);\n  gl_Position = vec4(pos + tickScale*dataCoord.yz + screenOffset, 0, 1);\n}\n"])}},{glslify:253}],206:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e),a=i(e,s.textVert,s.textFrag);return new l(t,r,a)};var n=t("gl-buffer"),i=t("gl-shader"),a=t("text-cache"),o=t("binary-search-bounds"),s=t("./shaders");function l(t,e,r){this.plot=t,this.vbo=e,this.shader=r,this.tickOffset=[[],[]],this.tickX=[[],[]],this.labelOffset=[0,0],this.labelCount=[0,0]}var c,u,f,h,d,p,m=l.prototype;m.drawTicks=(c=[0,0],u=[0,0],f=[0,0],function(t){var e=this.plot,r=this.shader,n=this.tickX[t],i=this.tickOffset[t],a=e.gl,s=e.viewBox,l=e.dataBox,h=e.screenBox,d=e.pixelRatio,p=e.tickEnable,m=e.tickPad,v=e.tickColor,g=e.tickAngle,y=e.labelEnable,b=e.labelPad,x=e.labelColor,_=e.labelAngle,w=this.labelOffset[t],M=this.labelCount[t],k=o.lt(n,l[t]),A=o.le(n,l[t+2]);c[0]=c[1]=0,c[t]=1,u[t]=(s[2+t]+s[t])/(h[2+t]-h[t])-1;var T=2/h[2+(1^t)]-h[1^t];u[1^t]=T*s[1^t]-1,p[t]&&(u[1^t]-=T*d*m[t],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t],r.uniforms.angle=g[t],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t]&&M&&(u[1^t]-=T*d*b[t],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t],r.uniforms.angle=_[t],a.drawArrays(a.TRIANGLES,w,M)),u[1^t]=T*s[2+(1^t)]-1,p[t+2]&&(u[1^t]+=T*d*m[t+2],k<A&&i[A]>i[k]&&(r.uniforms.dataAxis=c,r.uniforms.screenOffset=u,r.uniforms.color=v[t+2],r.uniforms.angle=g[t+2],a.drawArrays(a.TRIANGLES,i[k],i[A]-i[k]))),y[t+2]&&M&&(u[1^t]+=T*d*b[t+2],r.uniforms.dataAxis=f,r.uniforms.screenOffset=u,r.uniforms.color=x[t+2],r.uniforms.angle=_[t+2],a.drawArrays(a.TRIANGLES,w,M))}),m.drawTitle=function(){var t=[0,0],e=[0,0];return function(){var r=this.plot,n=this.shader,i=r.gl,a=r.screenBox,o=r.titleCenter,s=r.titleAngle,l=r.titleColor,c=r.pixelRatio;if(this.titleCount){for(var u=0;u<2;++u)e[u]=2*(o[u]*c-a[u])/(a[2+u]-a[u])-1;n.bind(),n.uniforms.dataAxis=t,n.uniforms.screenOffset=e,n.uniforms.angle=s,n.uniforms.color=l,i.drawArrays(i.TRIANGLES,this.titleOffset,this.titleCount)}}}(),m.bind=(h=[0,0],d=[0,0],p=[0,0],function(){var t=this.plot,e=this.shader,r=t._tickBounds,n=t.dataBox,i=t.screenBox,a=t.viewBox;e.bind();for(var o=0;o<2;++o){var s=r[o],l=r[o+2]-s,c=.5*(n[o+2]+n[o]),u=n[o+2]-n[o],f=a[o],m=a[o+2]-f,v=i[o],g=i[o+2]-v;d[o]=2*l/u*m/g,h[o]=2*(s-c)/u*m/g}p[1]=2*t.pixelRatio/(i[3]-i[1]),p[0]=p[1]*(i[3]-i[1])/(i[2]-i[0]),e.uniforms.dataScale=d,e.uniforms.dataShift=h,e.uniforms.textScale=p,this.vbo.bind(),e.attributes.textCoordinate.pointer()}),m.update=function(t){var e,r,n,i,o,s=[],l=t.ticks,c=t.bounds;for(o=0;o<2;++o){var u=[Math.floor(s.length/3)],f=[-1/0],h=l[o];for(e=0;e<h.length;++e){var d=h[e],p=d.x,m=d.text,v=d.font||"sans-serif";i=d.fontSize||12;for(var g=1/(c[o+2]-c[o]),y=c[o],b=m.split("\n"),x=0;x<b.length;x++)for(n=a(v,b[x]).data,r=0;r<n.length;r+=2)s.push(n[r]*i,-n[r+1]*i-x*i*1.2,(p-y)*g);u.push(Math.floor(s.length/3)),f.push(p)}this.tickOffset[o]=u,this.tickX[o]=f}for(o=0;o<2;++o){for(this.labelOffset[o]=Math.floor(s.length/3),n=a(t.labelFont[o],t.labels[o],{textAlign:"center"}).data,i=t.labelSize[o],e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.labelCount[o]=Math.floor(s.length/3)-this.labelOffset[o]}for(this.titleOffset=Math.floor(s.length/3),n=a(t.titleFont,t.title).data,i=t.titleSize,e=0;e<n.length;e+=2)s.push(n[e]*i,-n[e+1]*i,0);this.titleCount=Math.floor(s.length/3)-this.titleOffset,this.vbo.update(s)},m.dispose=function(){this.vbo.dispose(),this.shader.dispose()}},{"./shaders":205,"binary-search-bounds":207,"gl-buffer":165,"gl-shader":220,"text-cache":525}],207:[function(t,e,r){arguments[4][90][0].apply(r,arguments)},{dup:90}],208:[function(t,e,r){"use strict";e.exports=function(t){var e=t.gl,r=n(e,[e.drawingBufferWidth,e.drawingBufferHeight]),c=new l(e,r);return c.grid=i(c),c.text=a(c),c.line=o(c),c.box=s(c),c.update(t),c};var n=t("gl-select-static"),i=t("./lib/grid"),a=t("./lib/text"),o=t("./lib/line"),s=t("./lib/box");function l(t,e){this.gl=t,this.pickBuffer=e,this.screenBox=[0,0,t.drawingBufferWidth,t.drawingBufferHeight],this.viewBox=[0,0,0,0],this.dataBox=[-10,-10,10,10],this.gridLineEnable=[!0,!0],this.gridLineWidth=[1,1],this.gridLineColor=[[0,0,0,1],[0,0,0,1]],this.pixelRatio=1,this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickEnable=[!0,!0,!0,!0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[15,15,15,15],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelEnable=[!0,!0,!0,!0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.titleCenter=[0,0],this.titleEnable=!0,this.titleAngle=0,this.titleColor=[0,0,0,1],this.borderColor=[0,0,0,0],this.backgroundColor=[0,0,0,0],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[4,4],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderLineEnable=[!0,!0,!0,!0],this.borderLineWidth=[2,2,2,2],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.grid=null,this.text=null,this.line=null,this.box=null,this.objects=[],this.overlays=[],this._tickBounds=[1/0,1/0,-1/0,-1/0],this.static=!1,this.dirty=!1,this.pickDirty=!1,this.pickDelay=120,this.pickRadius=10,this._pickTimeout=null,this._drawPick=this.drawPick.bind(this),this._depthCounter=0}var c=l.prototype;function u(t){for(var e=t.slice(),r=0;r<e.length;++r)e[r]=e[r].slice();return e}function f(t,e){return t.x-e.x}c.setDirty=function(){this.dirty=this.pickDirty=!0},c.setOverlayDirty=function(){this.dirty=!0},c.nextDepthValue=function(){return this._depthCounter++/65536},c.draw=function(){var t=this.gl,e=this.screenBox,r=this.viewBox,n=this.dataBox,i=this.pixelRatio,a=this.grid,o=this.line,s=this.text,l=this.objects;if(this._depthCounter=0,this.pickDirty&&(this._pickTimeout&&clearTimeout(this._pickTimeout),this.pickDirty=!1,this._pickTimeout=setTimeout(this._drawPick,this.pickDelay)),this.dirty){if(this.dirty=!1,t.bindFramebuffer(t.FRAMEBUFFER,null),t.enable(t.SCISSOR_TEST),t.disable(t.DEPTH_TEST),t.depthFunc(t.LESS),t.depthMask(!1),t.enable(t.BLEND),t.blendEquation(t.FUNC_ADD,t.FUNC_ADD),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),this.borderColor){t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]);var c=this.borderColor;t.clearColor(c[0]*c[3],c[1]*c[3],c[2]*c[3],c[3]),t.clear(t.COLOR_BUFFER_BIT|t.DEPTH_BUFFER_BIT)}t.scissor(r[0],r[1],r[2]-r[0],r[3]-r[1]),t.viewport(r[0],r[1],r[2]-r[0],r[3]-r[1]);var u=this.backgroundColor;t.clearColor(u[0]*u[3],u[1]*u[3],u[2]*u[3],u[3]),t.clear(t.COLOR_BUFFER_BIT),a.draw();var f=this.zeroLineEnable,h=this.zeroLineColor,d=this.zeroLineWidth;if(f[0]||f[1]){o.bind();for(var p=0;p<2;++p)if(f[p]&&n[p]<=0&&n[p+2]>=0){var m=e[p]-n[p]*(e[p+2]-e[p])/(n[p+2]-n[p]);0===p?o.drawLine(m,e[1],m,e[3],d[p],h[p]):o.drawLine(e[0],m,e[2],m,d[p],h[p])}}for(p=0;p<l.length;++p)l[p].draw();t.viewport(e[0],e[1],e[2]-e[0],e[3]-e[1]),t.scissor(e[0],e[1],e[2]-e[0],e[3]-e[1]),this.grid.drawTickMarks(),o.bind();var v=this.borderLineEnable,g=this.borderLineWidth,y=this.borderLineColor;for(v[1]&&o.drawLine(r[0],r[1]-.5*g[1]*i,r[0],r[3]+.5*g[3]*i,g[1],y[1]),v[0]&&o.drawLine(r[0]-.5*g[0]*i,r[1],r[2]+.5*g[2]*i,r[1],g[0],y[0]),v[3]&&o.drawLine(r[2],r[1]-.5*g[1]*i,r[2],r[3]+.5*g[3]*i,g[3],y[3]),v[2]&&o.drawLine(r[0]-.5*g[0]*i,r[3],r[2]+.5*g[2]*i,r[3],g[2],y[2]),s.bind(),p=0;p<2;++p)s.drawTicks(p);this.titleEnable&&s.drawTitle();var b=this.overlays;for(p=0;p<b.length;++p)b[p].draw();t.disable(t.SCISSOR_TEST),t.disable(t.BLEND),t.depthMask(!0)}},c.drawPick=function(){if(!this.static){var t=this.pickBuffer;this.gl;this._pickTimeout=null,t.begin();for(var e=1,r=this.objects,n=0;n<r.length;++n)e=r[n].drawPick(e);t.end()}},c.pick=function(t,e){if(!this.static){var r=this.pixelRatio,n=this.pickPixelRatio,i=this.viewBox,a=0|Math.round((t-i[0]/r)*n),o=0|Math.round((e-i[1]/r)*n),s=this.pickBuffer.query(a,o,this.pickRadius);if(!s)return null;for(var l=s.id+(s.value[0]<<8)+(s.value[1]<<16)+(s.value[2]<<24),c=this.objects,u=0;u<c.length;++u){var f=c[u].pick(a,o,l);if(f)return f}return null}},c.setScreenBox=function(t){var e=this.screenBox,r=this.pixelRatio;e[0]=0|Math.round(t[0]*r),e[1]=0|Math.round(t[1]*r),e[2]=0|Math.round(t[2]*r),e[3]=0|Math.round(t[3]*r),this.setDirty()},c.setDataBox=function(t){var e=this.dataBox;(e[0]!==t[0]||e[1]!==t[1]||e[2]!==t[2]||e[3]!==t[3])&&(e[0]=t[0],e[1]=t[1],e[2]=t[2],e[3]=t[3],this.setDirty())},c.setViewBox=function(t){var e=this.pixelRatio,r=this.viewBox;r[0]=0|Math.round(t[0]*e),r[1]=0|Math.round(t[1]*e),r[2]=0|Math.round(t[2]*e),r[3]=0|Math.round(t[3]*e);var n=this.pickPixelRatio;this.pickBuffer.shape=[0|Math.round((t[2]-t[0])*n),0|Math.round((t[3]-t[1])*n)],this.setDirty()},c.update=function(t){t=t||{};var e=this.gl;this.pixelRatio=t.pixelRatio||1;var r=this.pixelRatio;this.pickPixelRatio=Math.max(r,1),this.setScreenBox(t.screenBox||[0,0,e.drawingBufferWidth/r,e.drawingBufferHeight/r]);this.screenBox;this.setViewBox(t.viewBox||[.125*(this.screenBox[2]-this.screenBox[0])/r,.125*(this.screenBox[3]-this.screenBox[1])/r,.875*(this.screenBox[2]-this.screenBox[0])/r,.875*(this.screenBox[3]-this.screenBox[1])/r]);var n=this.viewBox,i=(n[2]-n[0])/(n[3]-n[1]);this.setDataBox(t.dataBox||[-10,-10/i,10,10/i]),this.borderColor=!1!==t.borderColor&&(t.borderColor||[0,0,0,0]).slice(),this.backgroundColor=(t.backgroundColor||[0,0,0,0]).slice(),this.gridLineEnable=(t.gridLineEnable||[!0,!0]).slice(),this.gridLineWidth=(t.gridLineWidth||[1,1]).slice(),this.gridLineColor=u(t.gridLineColor||[[.5,.5,.5,1],[.5,.5,.5,1]]),this.zeroLineEnable=(t.zeroLineEnable||[!0,!0]).slice(),this.zeroLineWidth=(t.zeroLineWidth||[4,4]).slice(),this.zeroLineColor=u(t.zeroLineColor||[[0,0,0,1],[0,0,0,1]]),this.tickMarkLength=(t.tickMarkLength||[0,0,0,0]).slice(),this.tickMarkWidth=(t.tickMarkWidth||[0,0,0,0]).slice(),this.tickMarkColor=u(t.tickMarkColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.titleCenter=(t.titleCenter||[.5*(n[0]+n[2])/r,(n[3]+120)/r]).slice(),this.titleEnable=!("titleEnable"in t&&!t.titleEnable),this.titleAngle=t.titleAngle||0,this.titleColor=(t.titleColor||[0,0,0,1]).slice(),this.labelPad=(t.labelPad||[15,15,15,15]).slice(),this.labelAngle=(t.labelAngle||[0,Math.PI/2,0,3*Math.PI/2]).slice(),this.labelEnable=(t.labelEnable||[!0,!0,!0,!0]).slice(),this.labelColor=u(t.labelColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.tickPad=(t.tickPad||[15,15,15,15]).slice(),this.tickAngle=(t.tickAngle||[0,0,0,0]).slice(),this.tickEnable=(t.tickEnable||[!0,!0,!0,!0]).slice(),this.tickColor=u(t.tickColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]),this.borderLineEnable=(t.borderLineEnable||[!0,!0,!0,!0]).slice(),this.borderLineWidth=(t.borderLineWidth||[2,2,2,2]).slice(),this.borderLineColor=u(t.borderLineColor||[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]]);var a=t.ticks||[[],[]],o=this._tickBounds;o[0]=o[1]=1/0,o[2]=o[3]=-1/0;for(var s=0;s<2;++s){var l=a[s].slice(0);0!==l.length&&(l.sort(f),o[s]=Math.min(o[s],l[0].x),o[s+2]=Math.max(o[s+2],l[l.length-1].x))}this.grid.update({bounds:o,ticks:a}),this.text.update({bounds:o,ticks:a,labels:t.labels||["x","y"],labelSize:t.labelSize||[12,12],labelFont:t.labelFont||["sans-serif","sans-serif"],title:t.title||"",titleSize:t.titleSize||18,titleFont:t.titleFont||"sans-serif"}),this.static=!!t.static,this.setDirty()},c.dispose=function(){this.box.dispose(),this.grid.dispose(),this.text.dispose(),this.line.dispose();for(var t=this.objects.length-1;t>=0;--t)this.objects[t].dispose();this.objects.length=0;for(t=this.overlays.length-1;t>=0;--t)this.overlays[t].dispose();this.overlays.length=0,this.gl=null},c.addObject=function(t){this.objects.indexOf(t)<0&&(this.objects.push(t),this.setDirty())},c.removeObject=function(t){for(var e=this.objects,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setDirty();break}},c.addOverlay=function(t){this.overlays.indexOf(t)<0&&(this.overlays.push(t),this.setOverlayDirty())},c.removeOverlay=function(t){for(var e=this.overlays,r=0;r<e.length;++r)if(e[r]===t){e.splice(r,1),this.setOverlayDirty();break}}},{"./lib/box":202,"./lib/grid":203,"./lib/line":204,"./lib/text":206,"gl-select-static":219}],209:[function(t,e,r){var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\nattribute vec2 position;\nvarying vec2 uv;\nvoid main() {\n  uv = position;\n  gl_Position = vec4(position, 0, 1);\n}"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform sampler2D accumBuffer;\nvarying vec2 uv;\n\nvoid main() {\n  vec4 accum = texture2D(accumBuffer, 0.5 * (uv + 1.0));\n  gl_FragColor = min(vec4(1,1,1,1), accum);\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec2"}])}},{"gl-shader":220,glslify:253}],210:[function(t,e,r){"use strict";e.exports=function(t){var e=!1,r=((t=t||{}).pixelRatio||parseFloat(window.devicePixelRatio),t.canvas);if(!r)if(r=document.createElement("canvas"),t.container){var v=t.container;v.appendChild(r)}else document.body.appendChild(r);var g=t.gl;g||(g=function(t,e){var r=null;try{(r=t.getContext("webgl",e))||(r=t.getContext("experimental-webgl",e))}catch(t){return null}return r}(r,t.glOptions||{premultipliedAlpha:!0,antialias:!0}));if(!g)throw new Error("webgl not supported");var y=t.bounds||[[-10,-10,-10],[10,10,10]],b=new function(){this.mouse=[-1,-1],this.screen=null,this.distance=1/0,this.index=null,this.dataCoordinate=null,this.dataPosition=null,this.object=null,this.data=null},x=l(g,[g.drawingBufferWidth,g.drawingBufferHeight],{preferFloat:!d}),_=h(g),w=t.camera||{eye:[2,0,0],center:[0,0,0],up:[0,1,0],zoomMin:.1,zoomMax:100,mode:"turntable"},M=t.axes||{},k=i(g,M);k.enable=!M.disable;var A=t.spikes||{},T=o(g,A),E=[],S=[],L=[],C=[],P=!0,z=!0,O=new Array(16),D=new Array(16),I={view:null,projection:O,model:D},z=!0,R=[g.drawingBufferWidth,g.drawingBufferHeight],N={gl:g,contextLost:!1,pixelRatio:t.pixelRatio||parseFloat(window.devicePixelRatio),canvas:r,selection:b,camera:n(r,w),axes:k,axesPixels:null,spikes:T,bounds:y,objects:E,shape:R,aspect:t.aspectRatio||[1,1,1],pickRadius:t.pickRadius||10,zNear:t.zNear||.01,zFar:t.zFar||1e3,fovy:t.fovy||Math.PI/4,clearColor:t.clearColor||[0,0,0,0],autoResize:m(t.autoResize),autoBounds:m(t.autoBounds),autoScale:!!t.autoScale,autoCenter:m(t.autoCenter),clipToBounds:m(t.clipToBounds),snapToData:!!t.snapToData,onselect:t.onselect||null,onrender:t.onrender||null,onclick:t.onclick||null,cameraParams:I,oncontextloss:null,mouseListener:null},F=[g.drawingBufferWidth/N.pixelRatio|0,g.drawingBufferHeight/N.pixelRatio|0];function j(){if(!e&&N.autoResize){var t=r.parentNode,n=1,i=1;t&&t!==document.body?(n=t.clientWidth,i=t.clientHeight):(n=window.innerWidth,i=window.innerHeight);var a=0|Math.ceil(n*N.pixelRatio),o=0|Math.ceil(i*N.pixelRatio);if(a!==r.width||o!==r.height){r.width=a,r.height=o;var s=r.style;s.position=s.position||"absolute",s.left="0px",s.top="0px",s.width=n+"px",s.height=i+"px",P=!0}}}N.autoResize&&j();function B(){for(var t=E.length,e=C.length,r=0;r<e;++r)L[r]=0;t:for(var r=0;r<t;++r){var n=E[r],i=n.pickSlots;if(i){for(var a=0;a<e;++a)if(L[a]+i<255){S[r]=a,n.setPickBase(L[a]+1),L[a]+=i;continue t}var o=s(g,R);S[r]=e,C.push(o),L.push(i),n.setPickBase(1),e+=1}else S[r]=-1}for(;e>0&&0===L[e-1];)L.pop(),C.pop().dispose()}window.addEventListener("resize",j),N.update=function(t){e||(t=t||{},P=!0,z=!0)},N.add=function(t){e||(t.axes=k,E.push(t),S.push(-1),P=!0,z=!0,B())},N.remove=function(t){if(!e){var r=E.indexOf(t);r<0||(E.splice(r,1),S.pop(),P=!0,z=!0,B())}},N.dispose=function(){if(!e&&(e=!0,window.removeEventListener("resize",j),r.removeEventListener("webglcontextlost",q),N.mouseListener.enabled=!1,!N.contextLost)){k.dispose(),T.dispose();for(var t=0;t<E.length;++t)E[t].dispose();x.dispose();for(var t=0;t<C.length;++t)C[t].dispose();_.dispose(),g=null,k=null,T=null,E=[]}};var U=!1,V=0;function q(){if(N.contextLost)return!0;g.isContextLost()&&(N.contextLost=!0,N.mouseListener.enabled=!1,N.selection.object=null,N.oncontextloss&&N.oncontextloss())}N.mouseListener=u(r,function(t,r,n){if(!e){var i=C.length,a=E.length,o=b.object;b.distance=1/0,b.mouse[0]=r,b.mouse[1]=n,b.object=null,b.screen=null,b.dataCoordinate=b.dataPosition=null;var s=!1;if(t&&V)U=!0;else{U&&(z=!0),U=!1;for(var l=0;l<i;++l){var c=C[l].query(r,F[1]-n-1,N.pickRadius);if(c){if(c.distance>b.distance)continue;for(var u=0;u<a;++u){var f=E[u];if(S[u]===l){var h=f.pick(c);h&&(b.buttons=t,b.screen=c.coord,b.distance=c.distance,b.object=f,b.index=h.distance,b.dataPosition=h.position,b.dataCoordinate=h.dataCoordinate,b.data=h,s=!0)}}}}}o&&o!==b.object&&(o.highlight&&o.highlight(null),P=!0),b.object&&(b.object.highlight&&b.object.highlight(b.data),P=!0),(s=s||b.object!==o)&&N.onselect&&N.onselect(b),1&t&&!(1&V)&&N.onclick&&N.onclick(b),V=t}}),r.addEventListener("webglcontextlost",q);var H=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],G=[H[0].slice(),H[1].slice()];function Y(){if(!q()){j();var t=N.camera.tick();I.view=N.camera.matrix,P=P||t,z=z||t,k.pixelRatio=N.pixelRatio,T.pixelRatio=N.pixelRatio;var e=E.length,r=H[0],n=H[1];r[0]=r[1]=r[2]=1/0,n[0]=n[1]=n[2]=-1/0;for(var i=0;i<e;++i){var o=E[i];o.pixelRatio=N.pixelRatio,o.axes=N.axes,P=P||!!o.dirty,z=z||!!o.dirty;var s=o.bounds;if(s)for(var l=s[0],u=s[1],h=0;h<3;++h)r[h]=Math.min(r[h],l[h]),n[h]=Math.max(n[h],u[h])}var d=N.bounds;if(N.autoBounds)for(var h=0;h<3;++h){if(n[h]<r[h])r[h]=-1,n[h]=1;else{r[h]===n[h]&&(r[h]-=1,n[h]+=1);var m=.05*(n[h]-r[h]);r[h]=r[h]-m,n[h]=n[h]+m}d[0][h]=r[h],d[1][h]=n[h]}for(var v=!1,h=0;h<3;++h)v=v||G[0][h]!==d[0][h]||G[1][h]!==d[1][h],G[0][h]=d[0][h],G[1][h]=d[1][h];if(z=z||v,P=P||v){if(v){for(var y=[0,0,0],i=0;i<3;++i)y[i]=p((d[1][i]-d[0][i])/10);k.autoTicks?k.update({bounds:d,tickSpacing:y}):k.update({bounds:d})}var w=g.drawingBufferWidth,M=g.drawingBufferHeight;R[0]=w,R[1]=M,F[0]=0|Math.max(w/N.pixelRatio,1),F[1]=0|Math.max(M/N.pixelRatio,1),f(O,N.fovy,w/M,N.zNear,N.zFar);for(var i=0;i<16;++i)D[i]=0;D[15]=1;for(var A=0,i=0;i<3;++i)A=Math.max(A,d[1][i]-d[0][i]);for(var i=0;i<3;++i)N.autoScale?D[5*i]=N.aspect[i]/(d[1][i]-d[0][i]):D[5*i]=1/A,N.autoCenter&&(D[12+i]=.5*-D[5*i]*(d[0][i]+d[1][i]));for(var i=0;i<e;++i){var o=E[i];o.axesBounds=d,N.clipToBounds&&(o.clipBounds=d)}b.object&&(N.snapToData?T.position=b.dataCoordinate:T.position=b.dataPosition,T.bounds=d),z&&(z=!1,function(){if(q())return;g.colorMask(!0,!0,!0,!0),g.depthMask(!0),g.disable(g.BLEND),g.enable(g.DEPTH_TEST);for(var t=E.length,e=C.length,r=0;r<e;++r){var n=C[r];n.shape=F,n.begin();for(var i=0;i<t;++i)if(S[i]===r){var a=E[i];a.drawPick&&(a.pixelRatio=1,a.drawPick(I))}n.end()}}()),N.axesPixels=a(N.axes,I,w,M),N.onrender&&N.onrender(),g.bindFramebuffer(g.FRAMEBUFFER,null),g.viewport(0,0,w,M);var L=N.clearColor;g.clearColor(L[0],L[1],L[2],L[3]),g.clear(g.COLOR_BUFFER_BIT|g.DEPTH_BUFFER_BIT),g.depthMask(!0),g.colorMask(!0,!0,!0,!0),g.enable(g.DEPTH_TEST),g.depthFunc(g.LEQUAL),g.disable(g.BLEND),g.disable(g.CULL_FACE);var B=!1;k.enable&&(B=B||k.isTransparent(),k.draw(I)),T.axes=k,b.object&&T.draw(I),g.disable(g.CULL_FACE);for(var i=0;i<e;++i){var o=E[i];o.axes=k,o.pixelRatio=N.pixelRatio,o.isOpaque&&o.isOpaque()&&o.draw(I),o.isTransparent&&o.isTransparent()&&(B=!0)}if(B){x.shape=R,x.bind(),g.clear(g.DEPTH_BUFFER_BIT),g.colorMask(!1,!1,!1,!1),g.depthMask(!0),g.depthFunc(g.LESS),k.enable&&k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isOpaque&&o.isOpaque()&&o.draw(I)}g.enable(g.BLEND),g.blendEquation(g.FUNC_ADD),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.colorMask(!0,!0,!0,!0),g.depthMask(!1),g.clearColor(0,0,0,0),g.clear(g.COLOR_BUFFER_BIT),k.isTransparent()&&k.drawTransparent(I);for(var i=0;i<e;++i){var o=E[i];o.isTransparent&&o.isTransparent()&&o.drawTransparent(I)}g.bindFramebuffer(g.FRAMEBUFFER,null),g.blendFunc(g.ONE,g.ONE_MINUS_SRC_ALPHA),g.disable(g.DEPTH_TEST),_.bind(),x.color[0].bind(0),_.uniforms.accumBuffer=0,c(g),g.disable(g.BLEND)}P=!1;for(var i=0;i<e;++i)E[i].dirty=!1}}}return function t(){e||N.contextLost||(requestAnimationFrame(t),Y())}(),N.redraw=function(){e||(P=!0,Y())},N};var n=t("3d-view-controls"),i=t("gl-axes3d"),a=t("gl-axes3d/properties"),o=t("gl-spikes3d"),s=t("gl-select-static"),l=t("gl-fbo"),c=t("a-big-triangle"),u=t("mouse-change"),f=t("gl-mat4/perspective"),h=t("./lib/shader"),d=t("is-mobile")();function p(t){var e=Math.round(Math.log(Math.abs(t))/Math.log(10));if(e<0){var r=Math.round(Math.pow(10,-e));return Math.ceil(t*r)/r}if(e>0){r=Math.round(Math.pow(10,e));return Math.ceil(t/r)*r}return Math.ceil(t)}function m(t){return"boolean"!=typeof t||t}},{"./lib/shader":209,"3d-view-controls":39,"a-big-triangle":42,"gl-axes3d":157,"gl-axes3d/properties":164,"gl-fbo":171,"gl-mat4/perspective":189,"gl-select-static":219,"gl-spikes3d":229,"is-mobile":265,"mouse-change":424}],211:[function(t,e,r){var n=t("glslify");r.pointVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform float pointCloud;\n\nhighp float rand(vec2 co) {\n  highp float a = 12.9898;\n  highp float b = 78.233;\n  highp float c = 43758.5453;\n  highp float d = dot(co.xy, vec2(a, b));\n  highp float e = mod(d, 3.14);\n  return fract(sin(e) * c);\n}\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n    // if we don't jitter the point size a bit, overall point cloud\n    // saturation 'jumps' on zooming, which is disturbing and confusing\n  gl_PointSize = pointSize * ((19.5 + rand(position)) / 20.0);\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    // get the same square surface as circle would be\n    gl_PointSize *= 0.886;\n  }\n}"]),r.pointFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec4 color, borderColor;\nuniform float centerFraction;\nuniform float pointCloud;\n\nvoid main() {\n  float radius;\n  vec4 baseColor;\n  if(pointCloud != 0.0) { // pointCloud is truthy\n    if(centerFraction == 1.0) {\n      gl_FragColor = color;\n    } else {\n      gl_FragColor = mix(borderColor, color, centerFraction);\n    }\n  } else {\n    radius = length(2.0 * gl_PointCoord.xy - 1.0);\n    if(radius > 1.0) {\n      discard;\n    }\n    baseColor = mix(borderColor, color, step(radius, centerFraction));\n    gl_FragColor = vec4(baseColor.rgb * baseColor.a, baseColor.a);\n  }\n}\n"]),r.pickVertex=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec2 position;\nattribute vec4 pickId;\n\nuniform mat3 matrix;\nuniform float pointSize;\nuniform vec4 pickOffset;\n\nvarying vec4 fragId;\n\nvoid main() {\n  vec3 hgPosition = matrix * vec3(position, 1);\n  gl_Position  = vec4(hgPosition.xy, 0, hgPosition.z);\n  gl_PointSize = pointSize;\n\n  vec4 id = pickId + pickOffset;\n  id.y += floor(id.x / 256.0);\n  id.x -= floor(id.x / 256.0) * 256.0;\n\n  id.z += floor(id.y / 256.0);\n  id.y -= floor(id.y / 256.0) * 256.0;\n\n  id.w += floor(id.z / 256.0);\n  id.z -= floor(id.z / 256.0) * 256.0;\n\n  fragId = id;\n}\n"]),r.pickFragment=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragId;\n\nvoid main() {\n  float radius = length(2.0 * gl_PointCoord.xy - 1.0);\n  if(radius > 1.0) {\n    discard;\n  }\n  gl_FragColor = fragId / 255.0;\n}\n"])},{glslify:253}],212:[function(t,e,r){"use strict";var n=t("gl-shader"),i=t("gl-buffer"),a=t("typedarray-pool"),o=t("./lib/shader");function s(t,e,r,n,i){this.plot=t,this.offsetBuffer=e,this.pickBuffer=r,this.shader=n,this.pickShader=i,this.sizeMin=.5,this.sizeMinCap=2,this.sizeMax=20,this.areaRatio=1,this.pointCount=0,this.color=[1,0,0,1],this.borderColor=[0,0,0,1],this.blend=!1,this.pickOffset=0,this.points=null}e.exports=function(t,e){var r=t.gl,a=i(r),l=i(r),c=n(r,o.pointVertex,o.pointFragment),u=n(r,o.pickVertex,o.pickFragment),f=new s(t,a,l,c,u);return f.update(e),t.addObject(f),f};var l,c,u=s.prototype;u.dispose=function(){this.shader.dispose(),this.pickShader.dispose(),this.offsetBuffer.dispose(),this.pickBuffer.dispose(),this.plot.removeObject(this)},u.update=function(t){var e;function r(e,r){return e in t?t[e]:r}t=t||{},this.sizeMin=r("sizeMin",.5),this.sizeMax=r("sizeMax",20),this.color=r("color",[1,0,0,1]).slice(),this.areaRatio=r("areaRatio",1),this.borderColor=r("borderColor",[0,0,0,1]).slice(),this.blend=r("blend",!1);var n=t.positions.length>>>1,i=t.positions instanceof Float32Array,o=t.idToIndex instanceof Int32Array&&t.idToIndex.length>=n,s=t.positions,l=i?s:a.mallocFloat32(s.length),c=o?t.idToIndex:a.mallocInt32(n);if(i||l.set(s),!o)for(l.set(s),e=0;e<n;e++)c[e]=e;this.points=s,this.offsetBuffer.update(l),this.pickBuffer.update(c),i||a.free(l),o||a.free(c),this.pointCount=n,this.pickOffset=0},u.unifiedDraw=(l=[1,0,0,0,1,0,0,0,1],c=[0,0,0,0],function(t){var e=void 0!==t,r=e?this.pickShader:this.shader,n=this.plot.gl,i=this.plot.dataBox;if(0===this.pointCount)return t;var a=i[2]-i[0],o=i[3]-i[1],s=function(t,e){var r,n=0,i=t.length>>>1;for(r=0;r<i;r++){var a=t[2*r],o=t[2*r+1];a>=e[0]&&a<=e[2]&&o>=e[1]&&o<=e[3]&&n++}return n}(this.points,i),u=this.plot.pickPixelRatio*Math.max(Math.min(this.sizeMinCap,this.sizeMin),Math.min(this.sizeMax,this.sizeMax/Math.pow(s,.33333)));l[0]=2/a,l[4]=2/o,l[6]=-2*i[0]/a-1,l[7]=-2*i[1]/o-1,this.offsetBuffer.bind(),r.bind(),r.attributes.position.pointer(),r.uniforms.matrix=l,r.uniforms.color=this.color,r.uniforms.borderColor=this.borderColor,r.uniforms.pointCloud=u<5,r.uniforms.pointSize=u,r.uniforms.centerFraction=Math.min(1,Math.max(0,Math.sqrt(1-this.areaRatio))),e&&(c[0]=255&t,c[1]=t>>8&255,c[2]=t>>16&255,c[3]=t>>24&255,this.pickBuffer.bind(),r.attributes.pickId.pointer(n.UNSIGNED_BYTE),r.uniforms.pickOffset=c,this.pickOffset=t);var f=n.getParameter(n.BLEND),h=n.getParameter(n.DITHER);return f&&!this.blend&&n.disable(n.BLEND),h&&n.disable(n.DITHER),n.drawArrays(n.POINTS,0,this.pointCount),f&&!this.blend&&n.enable(n.BLEND),h&&n.enable(n.DITHER),t+this.pointCount}),u.draw=u.unifiedDraw,u.drawPick=u.unifiedDraw,u.pick=function(t,e,r){var n=this.pickOffset,i=this.pointCount;if(r<n||r>=n+i)return null;var a=r-n,o=this.points;return{object:this,pointId:a,dataCoord:[o[2*a],o[2*a+1]]}}},{"./lib/shader":211,"gl-buffer":165,"gl-shader":220,"typedarray-pool":534}],213:[function(t,e,r){e.exports=function(t,e,r,n){var i,a,o,s,l,c=e[0],u=e[1],f=e[2],h=e[3],d=r[0],p=r[1],m=r[2],v=r[3];(a=c*d+u*p+f*m+h*v)<0&&(a=-a,d=-d,p=-p,m=-m,v=-v);1-a>1e-6?(i=Math.acos(a),o=Math.sin(i),s=Math.sin((1-n)*i)/o,l=Math.sin(n*i)/o):(s=1-n,l=n);return t[0]=s*c+l*d,t[1]=s*u+l*p,t[2]=s*f+l*m,t[3]=s*h+l*v,t}},{}],214:[function(t,e,r){"use strict";var n=t("vectorize-text");e.exports=function(t,e){var r=i[e];r||(r=i[e]={});if(t in r)return r[t];for(var a=n(t,{textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),o=n(t,{triangles:!0,textAlign:"center",textBaseline:"middle",lineHeight:1,font:e}),s=[[1/0,1/0],[-1/0,-1/0]],l=0;l<a.positions.length;++l)for(var c=a.positions[l],u=0;u<2;++u)s[0][u]=Math.min(s[0][u],c[u]),s[1][u]=Math.max(s[1][u],c[u]);return r[t]=[o,a,s]};var i={}},{"vectorize-text":548}],215:[function(t,e,r){var n=t("gl-shader"),i=t("glslify"),a=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform vec4 highlightId;\nuniform float highlightScale;\nuniform mat4 model, view, projection;\nuniform vec3 clipBounds[2];\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   || \n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = 1.0;\n    if(distance(highlightId, id) < 0.0001) {\n      scale = highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1);\n    vec4 viewPosition = view * worldPosition;\n    viewPosition = viewPosition / viewPosition.w;\n    vec4 clipPosition = projection * (viewPosition + scale * vec4(glyph.x, -glyph.y, 0, 0));\n    \n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),o=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float highlightScale, pixelRatio;\nuniform vec4 highlightId;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0])) || any(greaterThan(position, clipBounds[1]))) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float scale = pixelRatio;\n    if(distance(highlightId.bgr, id.bgr) < 0.001) {\n      scale *= highlightScale;\n    }\n\n    vec4 worldPosition = model * vec4(position, 1.0);\n    vec4 viewPosition = view * worldPosition;\n    vec4 clipPosition = projection * viewPosition;\n    clipPosition /= clipPosition.w;\n    \n    gl_Position = clipPosition + vec4(screenSize * scale * vec2(glyph.x, -glyph.y), 0.0, 0.0);\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = position;\n  }\n}"]),s=i(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position;\nattribute vec4 color;\nattribute vec2 glyph;\nattribute vec4 id;\n\nuniform float highlightScale;\nuniform vec4 highlightId;\nuniform vec3 axes[2];\nuniform mat4 model, view, projection;\nuniform vec2 screenSize;\nuniform vec3 clipBounds[2];\nuniform float scale, pixelRatio;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(position, clipBounds[0]))   ||\n     any(greaterThan(position, clipBounds[1])) ) {\n    gl_Position = vec4(0,0,0,0);\n  } else {\n    float lscale = pixelRatio * scale;\n    if(distance(highlightId, id) < 0.0001) {\n      lscale *= highlightScale;\n    }\n\n    vec4 clipCenter   = projection * view * model * vec4(position, 1);\n    vec3 dataPosition = position + 0.5*lscale*(axes[0] * glyph.x + axes[1] * glyph.y) * clipCenter.w * screenSize.y;\n    vec4 clipPosition = projection * view * model * vec4(dataPosition, 1);\n\n    gl_Position = clipPosition;\n    interpColor = color;\n    pickId = id;\n    dataCoordinate = dataPosition;\n  }\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float opacity;\n\nvarying vec4 interpColor;\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   ||\n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = interpColor * opacity;\n  }\n}\n"]),c=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec3 fragClipBounds[2];\nuniform float pickGroup;\n\nvarying vec4 pickId;\nvarying vec3 dataCoordinate;\n\nvoid main() {\n  if(any(lessThan(dataCoordinate, fragClipBounds[0]))   || \n     any(greaterThan(dataCoordinate, fragClipBounds[1])) ) {\n    discard;\n  } else {\n    gl_FragColor = vec4(pickGroup, pickId.bgr);\n  }\n}"]),u=[{name:"position",type:"vec3"},{name:"color",type:"vec4"},{name:"glyph",type:"vec2"},{name:"id",type:"vec4"}],f={vertex:a,fragment:l,attributes:u},h={vertex:o,fragment:l,attributes:u},d={vertex:s,fragment:l,attributes:u},p={vertex:a,fragment:c,attributes:u},m={vertex:o,fragment:c,attributes:u},v={vertex:s,fragment:c,attributes:u};function g(t,e){var r=n(t,e),i=r.attributes;return i.position.location=0,i.color.location=1,i.glyph.location=2,i.id.location=3,r}r.createPerspective=function(t){return g(t,f)},r.createOrtho=function(t){return g(t,h)},r.createProject=function(t){return g(t,d)},r.createPickPerspective=function(t){return g(t,p)},r.createPickOrtho=function(t){return g(t,m)},r.createPickProject=function(t){return g(t,v)}},{"gl-shader":220,glslify:253}],216:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("typedarray-pool"),o=t("gl-mat4/multiply"),s=t("./lib/shaders"),l=t("./lib/glyphs"),c=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1];function u(t,e){var r=t[0],n=t[1],i=t[2],a=t[3];return t[0]=e[0]*r+e[4]*n+e[8]*i+e[12]*a,t[1]=e[1]*r+e[5]*n+e[9]*i+e[13]*a,t[2]=e[2]*r+e[6]*n+e[10]*i+e[14]*a,t[3]=e[3]*r+e[7]*n+e[11]*i+e[15]*a,t}function f(t,e,r,n){return u(n,n),u(n,n),u(n,n)}function h(t,e,r,n,i,a,o,s,l,c,u,f){this.gl=t,this.pixelRatio=1,this.shader=e,this.orthoShader=r,this.projectShader=n,this.pointBuffer=i,this.colorBuffer=a,this.glyphBuffer=o,this.idBuffer=s,this.vao=l,this.vertexCount=0,this.lineVertexCount=0,this.opacity=1,this.lineWidth=0,this.projectScale=[2/3,2/3,2/3],this.projectOpacity=[1,1,1],this.pickId=0,this.pickPerspectiveShader=c,this.pickOrthoShader=u,this.pickProjectShader=f,this.points=[],this._selectResult=new function(t,e){this.index=t,this.dataCoordinate=this.position=e}(0,[0,0,0]),this.useOrtho=!0,this.bounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.axesProject=[!0,!0,!0],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.highlightId=[1,1,1,1],this.highlightScale=2,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.dirty=!0}e.exports=function(t){var e=t.gl,r=s.createPerspective(e),a=s.createOrtho(e),o=s.createProject(e),l=s.createPickPerspective(e),c=s.createPickOrtho(e),u=s.createPickProject(e),f=n(e),d=n(e),p=n(e),m=n(e),v=i(e,[{buffer:f,size:3,type:e.FLOAT},{buffer:d,size:4,type:e.FLOAT},{buffer:p,size:2,type:e.FLOAT},{buffer:m,size:4,type:e.UNSIGNED_BYTE,normalized:!0}]),g=new h(e,r,a,o,f,d,p,m,v,l,c,u);return g.update(t),g};var d=h.prototype;d.pickSlots=1,d.setPickBase=function(t){this.pickId=t},d.isTransparent=function(){if(this.opacity<1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]<1)return!0;return!1},d.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this.axesProject[t]&&this.projectOpacity[t]>=1)return!0;return!1};var p=[0,0],m=[0,0,0],v=[0,0,0],g=[0,0,0,1],y=[0,0,0,1],b=c.slice(),x=[0,0,0],_=[[0,0,0],[0,0,0]];function w(t){return t[0]=t[1]=t[2]=0,t}function M(t,e){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[3]=1,t}function k(t,e,r,n){return t[0]=e[0],t[1]=e[1],t[2]=e[2],t[r]=n,t}function A(t,e,r,n,i){var a,s=e.axesProject,l=e.gl,u=t.uniforms,h=r.model||c,d=r.view||c,A=r.projection||c,T=e.axesBounds,E=function(t){for(var e=_,r=0;r<2;++r)for(var n=0;n<3;++n)e[r][n]=Math.max(Math.min(t[r][n],1e8),-1e8);return e}(e.clipBounds);a=e.axes&&e.axes.lastCubeProps?e.axes.lastCubeProps.axis:[1,1,1],p[0]=2/l.drawingBufferWidth,p[1]=2/l.drawingBufferHeight,t.bind(),u.view=d,u.projection=A,u.screenSize=p,u.highlightId=e.highlightId,u.highlightScale=e.highlightScale,u.clipBounds=E,u.pickGroup=e.pickId/255,u.pixelRatio=e.pixelRatio;for(var S=0;S<3;++S)if(s[S]&&e.projectOpacity[S]<1===n){u.scale=e.projectScale[S],u.opacity=e.projectOpacity[S];for(var L=b,C=0;C<16;++C)L[C]=0;for(C=0;C<4;++C)L[5*C]=1;L[5*S]=0,a[S]<0?L[12+S]=T[0][S]:L[12+S]=T[1][S],o(L,h,L),u.model=L;var P=(S+1)%3,z=(S+2)%3,O=w(m),D=w(v);O[P]=1,D[z]=1;var I=f(0,0,0,M(g,O)),R=f(0,0,0,M(y,D));if(Math.abs(I[1])>Math.abs(R[1])){var N=I;I=R,R=N,N=O,O=D,D=N;var F=P;P=z,z=F}I[0]<0&&(O[P]=-1),R[1]>0&&(D[z]=-1);var j=0,B=0;for(C=0;C<4;++C)j+=Math.pow(h[4*P+C],2),B+=Math.pow(h[4*z+C],2);O[P]/=Math.sqrt(j),D[z]/=Math.sqrt(B),u.axes[0]=O,u.axes[1]=D,u.fragClipBounds[0]=k(x,E[0],S,-1e8),u.fragClipBounds[1]=k(x,E[1],S,1e8),e.vao.draw(l.TRIANGLES,e.vertexCount),e.lineWidth>0&&(l.lineWidth(e.lineWidth),e.vao.draw(l.LINES,e.lineVertexCount,e.vertexCount))}}var T=[[-1e8,-1e8,-1e8],[1e8,1e8,1e8]];function E(t,e,r,n,i,a){var o=r.gl;if(r.vao.bind(),i===r.opacity<1||a){t.bind();var s=t.uniforms;s.model=n.model||c,s.view=n.view||c,s.projection=n.projection||c,p[0]=2/o.drawingBufferWidth,p[1]=2/o.drawingBufferHeight,s.screenSize=p,s.highlightId=r.highlightId,s.highlightScale=r.highlightScale,s.fragClipBounds=T,s.clipBounds=r.axes.bounds,s.opacity=r.opacity,s.pickGroup=r.pickId/255,s.pixelRatio=r.pixelRatio,r.vao.draw(o.TRIANGLES,r.vertexCount),r.lineWidth>0&&(o.lineWidth(r.lineWidth),r.vao.draw(o.LINES,r.lineVertexCount,r.vertexCount))}A(e,r,n,i),r.vao.unbind()}d.draw=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!1,!1)},d.drawTransparent=function(t){E(this.useOrtho?this.orthoShader:this.shader,this.projectShader,this,t,!0,!1)},d.drawPick=function(t){E(this.useOrtho?this.pickOrthoShader:this.pickPerspectiveShader,this.pickProjectShader,this,t,!1,!0)},d.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=t.value[2]+(t.value[1]<<8)+(t.value[0]<<16);if(e>=this.pointCount||e<0)return null;var r=this.points[e],n=this._selectResult;n.index=e;for(var i=0;i<3;++i)n.position[i]=n.dataCoordinate[i]=r[i];return n},d.highlight=function(t){if(t){var e=t.index,r=255&e,n=e>>8&255,i=e>>16&255;this.highlightId=[r/255,n/255,i/255,0]}else this.highlightId=[1,1,1,1]},d.update=function(t){if("perspective"in(t=t||{})&&(this.useOrtho=!t.perspective),"orthographic"in t&&(this.useOrtho=!!t.orthographic),"lineWidth"in t&&(this.lineWidth=t.lineWidth),"project"in t)if(Array.isArray(t.project))this.axesProject=t.project;else{var e=!!t.project;this.axesProject=[e,e,e]}if("projectScale"in t)if(Array.isArray(t.projectScale))this.projectScale=t.projectScale.slice();else{var r=+t.projectScale;this.projectScale=[r,r,r]}if("projectOpacity"in t)if(Array.isArray(t.projectOpacity))this.projectOpacity=t.projectOpacity.slice();else{r=+t.projectOpacity;this.projectOpacity=[r,r,r]}"opacity"in t&&(this.opacity=t.opacity),this.dirty=!0;var n=t.position;if(n){var i=t.font||"normal",o=t.alignment||[0,0],s=[1/0,1/0,1/0],c=[-1/0,-1/0,-1/0],u=t.glyph,f=t.color,h=t.size,d=t.angle,p=t.lineColor,m=0,v=0,g=0,y=n.length;t:for(var b=0;b<y;++b){for(var x=n[b],_=0;_<3;++_)if(isNaN(x[_])||!isFinite(x[_]))continue t;var w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];v+=3*w.cells.length,g+=2*M.edges.length}var A=v+g,T=a.mallocFloat(3*A),E=a.mallocFloat(4*A),S=a.mallocFloat(2*A),L=a.mallocUint32(A),C=[0,o[1]],P=0,z=v,O=[0,0,0,1],D=[0,0,0,1],I=Array.isArray(f)&&Array.isArray(f[0]),R=Array.isArray(p)&&Array.isArray(p[0]);t:for(b=0;b<y;++b){var N;for(x=n[b],_=0;_<3;++_){if(isNaN(x[_])||!isFinite(x[_])){m+=1;continue t}c[_]=Math.max(c[_],x[_]),s[_]=Math.min(s[_],x[_])}var F;w=(N=Array.isArray(u)?l(u[b],i):l(u||"\u25cf",i))[0],M=N[1],k=N[2];if(Array.isArray(f)){if(3===(F=I?f[b]:f).length){for(_=0;_<3;++_)O[_]=F[_];O[3]=1}else if(4===F.length)for(_=0;_<4;++_)O[_]=F[_]}else 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l=s[0]+(n[0]-o[0])/(o[2]-o[0])*(s[2]-s[0]),c=s[1]+(n[1]-o[1])/(o[3]-o[1])*(s[3]-s[1]);t[0]&&a.drawLine(l,c,s[0],c,e[0],r[0]),t[1]&&a.drawLine(l,c,l,s[1],e[1],r[1]),t[2]&&a.drawLine(l,c,s[2],c,e[2],r[2]),t[3]&&a.drawLine(l,c,l,s[3],e[3],r[3])}},i.dispose=function(){this.plot.removeOverlay(this)}},{}],228:[function(t,e,r){"use strict";var n=t("glslify"),i=t("gl-shader"),a=n(["precision mediump float;\n#define GLSLIFY 1\n\nattribute vec3 position, color;\nattribute float weight;\n\nuniform mat4 model, view, projection;\nuniform vec3 coordinates[3];\nuniform vec4 colors[3];\nuniform vec2 screenShape;\nuniform float lineWidth;\n\nvarying vec4 fragColor;\n\nvoid main() {\n  vec3 vertexPosition = mix(coordinates[0],\n    mix(coordinates[2], coordinates[1], 0.5 * (position + 1.0)), abs(position));\n\n  vec4 clipPos = projection * view * model * vec4(vertexPosition, 1.0);\n  vec2 clipOffset = (projection * view * model * vec4(color, 0.0)).xy;\n  vec2 delta = weight * clipOffset * screenShape;\n  vec2 lineOffset = normalize(vec2(delta.y, -delta.x)) / screenShape;\n\n  gl_Position   = vec4(clipPos.xy + clipPos.w * 0.5 * lineWidth * lineOffset, clipPos.z, clipPos.w);\n  fragColor     = color.x * colors[0] + color.y * colors[1] + color.z * colors[2];\n}\n"]),o=n(["precision mediump float;\n#define GLSLIFY 1\n\nvarying vec4 fragColor;\n\nvoid main() {\n  gl_FragColor = fragColor;\n}"]);e.exports=function(t){return i(t,a,o,null,[{name:"position",type:"vec3"},{name:"color",type:"vec3"},{name:"weight",type:"float"}])}},{"gl-shader":220,glslify:253}],229:[function(t,e,r){"use strict";var n=t("gl-buffer"),i=t("gl-vao"),a=t("./shaders/index");e.exports=function(t,e){var r=[];function o(t,e,n,i,a,o){var 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vec3 lowerBound, upperBound;\nuniform float contourTint;\nuniform vec4 contourColor;\nuniform sampler2D colormap;\nuniform vec3 clipBounds[2];\nuniform float roughness, fresnel, kambient, kdiffuse, kspecular, opacity;\nuniform float vertexColor;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec3 lightDirection, eyeDirection, surfaceNormal;\nvarying vec4 vColor;\n\nvoid main() {\n  if (kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n\n  vec3 N = normalize(surfaceNormal);\n  vec3 V = normalize(eyeDirection);\n  vec3 L = normalize(lightDirection);\n\n  if(gl_FrontFacing) {\n    N = -N;\n  }\n\n  float specular = max(beckmannSpecular(L, V, N, roughness), 0.);\n  float diffuse  = min(kambient + kdiffuse * max(dot(N, L), 0.0), 1.0);\n\n  //decide how to interpolate color \u2014 in vertex or in fragment\n  vec4 surfaceColor = step(vertexColor, .5) * texture2D(colormap, 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planeCoordinate = uv.zw;\n\n  vColor = texture2D(colormap, vec2(value, value));\n\n  //Don't do lighting for contours\n  surfaceNormal   = vec3(1,0,0);\n  eyeDirection    = vec3(0,1,0);\n  lightDirection  = vec3(0,0,1);\n}\n"]),l=i(["precision mediump float;\n#define GLSLIFY 1\n\nuniform vec2 shape;\nuniform vec3 clipBounds[2];\nuniform float pickId;\n\nvarying float value, kill;\nvarying vec3 worldCoordinate;\nvarying vec2 planeCoordinate;\nvarying vec3 surfaceNormal;\n\nvec2 splitFloat(float v) {\n  float vh = 255.0 * v;\n  float upper = floor(vh);\n  float lower = fract(vh);\n  return vec2(upper / 255.0, floor(lower * 16.0) / 16.0);\n}\n\nvoid main() {\n  if(kill > 0.0 ||\n    any(lessThan(worldCoordinate, clipBounds[0])) || any(greaterThan(worldCoordinate, clipBounds[1]))) {\n    discard;\n  }\n  vec2 ux = splitFloat(planeCoordinate.x / shape.x);\n  vec2 uy = splitFloat(planeCoordinate.y / shape.y);\n  gl_FragColor = vec4(pickId, ux.x, uy.x, ux.y + 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n=t("bit-twiddle"),i=t("gl-buffer"),a=t("gl-vao"),o=t("gl-texture2d"),s=t("typedarray-pool"),l=t("colormap"),c=t("ndarray-ops"),u=t("ndarray-pack"),f=t("ndarray"),h=t("surface-nets"),d=t("gl-mat4/multiply"),p=t("gl-mat4/invert"),m=t("binary-search-bounds"),v=t("ndarray-gradient"),g=t("./lib/shaders"),y=g.createShader,b=g.createContourShader,x=g.createPickShader,_=g.createPickContourShader,w=40,M=[1,0,0,0,0,1,0,0,0,0,1,0,0,0,0,1],k=[[0,0],[0,1],[1,0],[1,1],[1,0],[0,1]],A=[[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0]];!function(){for(var t=0;t<3;++t){var e=A[t],r=(t+2)%3;e[(t+1)%3+0]=1,e[r+3]=1,e[t+6]=1}}();var T=256;function E(t,e,r,n,i,a,o,l,c,u,h,d,p,m){this.gl=t,this.shape=e,this.bounds=r,this.intensityBounds=[],this._shader=n,this._pickShader=i,this._coordinateBuffer=a,this._vao=o,this._colorMap=l,this._contourShader=c,this._contourPickShader=u,this._contourBuffer=h,this._contourVAO=d,this._contourOffsets=[[],[],[]],this._contourCounts=[[],[],[]],this._vertexCount=0,this._pickResult=new function(t,e,r,n,i){this.position=t,this.index=e,this.uv=r,this.level=n,this.dataCoordinate=i}([0,0,0],[0,0],[0,0],[0,0,0],[0,0,0]),this._dynamicBuffer=p,this._dynamicVAO=m,this._dynamicOffsets=[0,0,0],this._dynamicCounts=[0,0,0],this.contourWidth=[1,1,1],this.contourLevels=[[1],[1],[1]],this.contourTint=[0,0,0],this.contourColor=[[.5,.5,.5,1],[.5,.5,.5,1],[.5,.5,.5,1]],this.showContour=!0,this.showSurface=!0,this.enableHighlight=[!0,!0,!0],this.highlightColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.highlightTint=[1,1,1],this.highlightLevel=[-1,-1,-1],this.enableDynamic=[!0,!0,!0],this.dynamicLevel=[NaN,NaN,NaN],this.dynamicColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.dynamicTint=[1,1,1],this.dynamicWidth=[1,1,1],this.axesBounds=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]],this.surfaceProject=[!1,!1,!1],this.contourProject=[[!1,!1,!1],[!1,!1,!1],[!1,!1,!1]],this.colorBounds=[!1,!1],this._field=[f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0]),f(s.mallocFloat(1024),[0,0])],this.pickId=1,this.clipBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.snapToData=!1,this.opacity=1,this.lightPosition=[10,1e4,0],this.ambientLight=.8,this.diffuseLight=.8,this.specularLight=2,this.roughness=.5,this.fresnel=1.5,this.vertexColor=0,this.dirty=!0}var S=E.prototype;S.isTransparent=function(){return this.opacity<1},S.isOpaque=function(){if(this.opacity>=1)return!0;for(var t=0;t<3;++t)if(this._contourCounts[t].length>0||this._dynamicCounts[t]>0)return!0;return!1},S.pickSlots=1,S.setPickBase=function(t){this.pickId=t};var L=[0,0,0],C={showSurface:!1,showContour:!1,projections:[M.slice(),M.slice(),M.slice()],clipBounds:[[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]],[[0,0,0],[0,0,0]]]};function P(t,e){var r,n,i,a=e.axes&&e.axes.lastCubeProps.axis||L,o=e.showSurface,s=e.showContour;for(r=0;r<3;++r)for(o=o||e.surfaceProject[r],n=0;n<3;++n)s=s||e.contourProject[r][n];for(r=0;r<3;++r){var l=C.projections[r];for(n=0;n<16;++n)l[n]=0;for(n=0;n<4;++n)l[5*n]=1;l[5*r]=0,l[12+r]=e.axesBounds[+(a[r]>0)][r],d(l,t.model,l);var c=C.clipBounds[r];for(i=0;i<2;++i)for(n=0;n<3;++n)c[i][n]=t.clipBounds[i][n];c[0][r]=-1e8,c[1][r]=1e8}return C.showSurface=o,C.showContour=s,C}var z={model:M,view:M,projection:M,inverseModel:M.slice(),lowerBound:[0,0,0],upperBound:[0,0,0],colorMap:0,clipBounds:[[0,0,0],[0,0,0]],height:0,contourTint:0,contourColor:[0,0,0,1],permutation:[1,0,0,0,1,0,0,0,1],zOffset:-1e-4,kambient:1,kdiffuse:1,kspecular:1,lightPosition:[1e3,1e3,1e3],eyePosition:[0,0,0],roughness:1,fresnel:1,opacity:1,vertexColor:0},O=M.slice(),D=[1,0,0,0,1,0,0,0,1];function I(t,e){t=t||{};var r=this.gl;r.disable(r.CULL_FACE),this._colorMap.bind(0);var n=z;n.model=t.model||M,n.view=t.view||M,n.projection=t.projection||M,n.lowerBound=[this.bounds[0][0],this.bounds[0][1],this.colorBounds[0]||this.bounds[0][2]],n.upperBound=[this.bounds[1][0],this.bounds[1][1],this.colorBounds[1]||this.bounds[1][2]],n.contourColor=this.contourColor[0],n.inverseModel=p(n.inverseModel,n.model);for(var i=0;i<2;++i)for(var a=n.clipBounds[i],o=0;o<3;++o)a[o]=Math.min(Math.max(this.clipBounds[i][o],-1e8),1e8);n.kambient=this.ambientLight,n.kdiffuse=this.diffuseLight,n.kspecular=this.specularLight,n.roughness=this.roughness,n.fresnel=this.fresnel,n.opacity=this.opacity,n.height=0,n.permutation=D,n.vertexColor=this.vertexColor;var s=O;for(d(s,n.view,n.model),d(s,n.projection,s),p(s,s),i=0;i<3;++i)n.eyePosition[i]=s[12+i]/s[15];var l=s[15];for(i=0;i<3;++i)l+=this.lightPosition[i]*s[4*i+3];for(i=0;i<3;++i){var c=s[12+i];for(o=0;o<3;++o)c+=s[4*o+i]*this.lightPosition[o];n.lightPosition[i]=c/l}var u=P(n,this);if(u.showSurface&&e===this.opacity<1){for(this._shader.bind(),this._shader.uniforms=n,this._vao.bind(),this.showSurface&&this._vertexCount&&this._vao.draw(r.TRIANGLES,this._vertexCount),i=0;i<3;++i)this.surfaceProject[i]&&this.vertexCount&&(this._shader.uniforms.model=u.projections[i],this._shader.uniforms.clipBounds=u.clipBounds[i],this._vao.draw(r.TRIANGLES,this._vertexCount));this._vao.unbind()}if(u.showContour&&!e){var f=this._contourShader;n.kambient=1,n.kdiffuse=0,n.kspecular=0,n.opacity=1,f.bind(),f.uniforms=n;var h=this._contourVAO;for(h.bind(),i=0;i<3;++i)for(f.uniforms.permutation=A[i],r.lineWidth(this.contourWidth[i]),o=0;o<this.contourLevels[i].length;++o)this._contourCounts[i][o]&&(o===this.highlightLevel[i]?(f.uniforms.contourColor=this.highlightColor[i],f.uniforms.contourTint=this.highlightTint[i]):0!==o&&o-1!==this.highlightLevel[i]||(f.uniforms.contourColor=this.contourColor[i],f.uniforms.contourTint=this.contourTint[i]),f.uniforms.height=this.contourLevels[i][o],h.draw(r.LINES,this._contourCounts[i][o],this._contourOffsets[i][o]));for(i=0;i<3;++i)for(f.uniforms.model=u.projections[i],f.uniforms.clipBounds=u.clipBounds[i],o=0;o<3;++o)if(this.contourProject[i][o]){f.uniforms.permutation=A[o],r.lineWidth(this.contourWidth[o]);for(var m=0;m<this.contourLevels[o].length;++m)m===this.highlightLevel[o]?(f.uniforms.contourColor=this.highlightColor[o],f.uniforms.contourTint=this.highlightTint[o]):0!==m&&m-1!==this.highlightLevel[o]||(f.uniforms.contourColor=this.contourColor[o],f.uniforms.contourTint=this.contourTint[o]),f.uniforms.height=this.contourLevels[o][m],h.draw(r.LINES,this._contourCounts[o][m],this._contourOffsets[o][m])}for(h.unbind(),(h=this._dynamicVAO).bind(),i=0;i<3;++i)if(0!==this._dynamicCounts[i])for(f.uniforms.model=n.model,f.uniforms.clipBounds=n.clipBounds,f.uniforms.permutation=A[i],r.lineWidth(this.dynamicWidth[i]),f.uniforms.contourColor=this.dynamicColor[i],f.uniforms.contourTint=this.dynamicTint[i],f.uniforms.height=this.dynamicLevel[i],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]),o=0;o<3;++o)this.contourProject[o][i]&&(f.uniforms.model=u.projections[o],f.uniforms.clipBounds=u.clipBounds[o],h.draw(r.LINES,this._dynamicCounts[i],this._dynamicOffsets[i]));h.unbind()}}S.draw=function(t){return I.call(this,t,!1)},S.drawTransparent=function(t){return I.call(this,t,!0)};var R={model:M,view:M,projection:M,inverseModel:M,clipBounds:[[0,0,0],[0,0,0]],height:0,shape:[0,0],pickId:0,lowerBound:[0,0,0],upperBound:[0,0,0],zOffset:0,permutation:[1,0,0,0,1,0,0,0,1],lightPosition:[0,0,0],eyePosition:[0,0,0]};function N(t,e){var r=e.shape.slice(),n=t.shape.slice();c.assign(t.lo(1,1).hi(r[0],r[1]),e),c.assign(t.lo(1).hi(r[0],1),e.hi(r[0],1)),c.assign(t.lo(1,n[1]-1).hi(r[0],1),e.lo(0,r[1]-1).hi(r[0],1)),c.assign(t.lo(0,1).hi(1,r[1]),e.hi(1)),c.assign(t.lo(n[0]-1,1).hi(1,r[1]),e.lo(r[0]-1)),t.set(0,0,e.get(0,0)),t.set(0,n[1]-1,e.get(0,r[1]-1)),t.set(n[0]-1,0,e.get(r[0]-1,0)),t.set(n[0]-1,n[1]-1,e.get(r[0]-1,r[1]-1))}function F(t,e){return Array.isArray(t)?[e(t[0]),e(t[1]),e(t[2])]:[e(t),e(t),e(t)]}function j(t){return Array.isArray(t)?3===t.length?[t[0],t[1],t[2],1]:[t[0],t[1],t[2],t[3]]:[0,0,0,1]}function B(t){if(Array.isArray(t)){if(Array.isArray(t))return[j(t[0]),j(t[1]),j(t[2])];var e=j(t);return[e.slice(),e.slice(),e.slice()]}}S.drawPick=function(t){t=t||{};var e=this.gl;e.disable(e.CULL_FACE);var r=R;r.model=t.model||M,r.view=t.view||M,r.projection=t.projection||M,r.shape=this._field[2].shape,r.pickId=this.pickId/255,r.lowerBound=this.bounds[0],r.upperBound=this.bounds[1],r.permutation=D;for(var n=0;n<2;++n)for(var i=r.clipBounds[n],a=0;a<3;++a)i[a]=Math.min(Math.max(this.clipBounds[n][a],-1e8),1e8);var o=P(r,this);if(o.showSurface){for(this._pickShader.bind(),this._pickShader.uniforms=r,this._vao.bind(),this._vao.draw(e.TRIANGLES,this._vertexCount),n=0;n<3;++n)this.surfaceProject[n]&&(this._pickShader.uniforms.model=o.projections[n],this._pickShader.uniforms.clipBounds=o.clipBounds[n],this._vao.draw(e.TRIANGLES,this._vertexCount));this._vao.unbind()}if(o.showContour){var s=this._contourPickShader;s.bind(),s.uniforms=r;var l=this._contourVAO;for(l.bind(),a=0;a<3;++a)for(e.lineWidth(this.contourWidth[a]),s.uniforms.permutation=A[a],n=0;n<this.contourLevels[a].length;++n)this._contourCounts[a][n]&&(s.uniforms.height=this.contourLevels[a][n],l.draw(e.LINES,this._contourCounts[a][n],this._contourOffsets[a][n]));for(n=0;n<3;++n)for(s.uniforms.model=o.projections[n],s.uniforms.clipBounds=o.clipBounds[n],a=0;a<3;++a)if(this.contourProject[n][a]){s.uniforms.permutation=A[a],e.lineWidth(this.contourWidth[a]);for(var c=0;c<this.contourLevels[a].length;++c)this._contourCounts[a][c]&&(s.uniforms.height=this.contourLevels[a][c],l.draw(e.LINES,this._contourCounts[a][c],this._contourOffsets[a][c]))}l.unbind()}},S.pick=function(t){if(!t)return null;if(t.id!==this.pickId)return null;var e=this._field[2].shape,r=this._pickResult,n=e[0]*(t.value[0]+(t.value[2]>>4)/16)/255,i=Math.floor(n),a=n-i,o=e[1]*(t.value[1]+(15&t.value[2])/16)/255,s=Math.floor(o),l=o-s;i+=1,s+=1;var c=r.position;c[0]=c[1]=c[2]=0;for(var u=0;u<2;++u)for(var f=u?a:1-a,h=0;h<2;++h)for(var d=i+u,p=s+h,v=f*(h?l:1-l),g=0;g<3;++g)c[g]+=this._field[g].get(d,p)*v;for(var y=this._pickResult.level,b=0;b<3;++b)if(y[b]=m.le(this.contourLevels[b],c[b]),y[b]<0)this.contourLevels[b].length>0&&(y[b]=0);else if(y[b]<this.contourLevels[b].length-1){var x=this.contourLevels[b][y[b]],_=this.contourLevels[b][y[b]+1];Math.abs(x-c[b])>Math.abs(_-c[b])&&(y[b]+=1)}for(r.index[0]=a<.5?i:i+1,r.index[1]=l<.5?s:s+1,r.uv[0]=n/e[0],r.uv[1]=o/e[1],g=0;g<3;++g)r.dataCoordinate[g]=this._field[g].get(r.index[0],r.index[1]);return r},S.update=function(t){t=t||{},this.dirty=!0,"contourWidth"in t&&(this.contourWidth=F(t.contourWidth,Number)),"showContour"in t&&(this.showContour=F(t.showContour,Boolean)),"showSurface"in t&&(this.showSurface=!!t.showSurface),"contourTint"in t&&(this.contourTint=F(t.contourTint,Boolean)),"contourColor"in t&&(this.contourColor=B(t.contourColor)),"contourProject"in t&&(this.contourProject=F(t.contourProject,function(t){return F(t,Boolean)})),"surfaceProject"in t&&(this.surfaceProject=t.surfaceProject),"dynamicColor"in t&&(this.dynamicColor=B(t.dynamicColor)),"dynamicTint"in t&&(this.dynamicTint=F(t.dynamicTint,Number)),"dynamicWidth"in t&&(this.dynamicWidth=F(t.dynamicWidth,Number)),"opacity"in t&&(this.opacity=t.opacity),"colorBounds"in t&&(this.colorBounds=t.colorBounds),"vertexColor"in t&&(this.vertexColor=t.vertexColor?1:0);var e=t.field||t.coords&&t.coords[2]||null,r=!1;if(e||(e=this._field[2].shape[0]||this._field[2].shape[2]?this._field[2].lo(1,1).hi(this._field[2].shape[0]-2,this._field[2].shape[1]-2):this._field[2].hi(0,0)),"field"in t||"coords"in t){var i=(e.shape[0]+2)*(e.shape[1]+2);i>this._field[2].data.length&&(s.freeFloat(this._field[2].data),this._field[2].data=s.mallocFloat(n.nextPow2(i))),this._field[2]=f(this._field[2].data,[e.shape[0]+2,e.shape[1]+2]),N(this._field[2],e),this.shape=e.shape.slice();for(var a=this.shape,o=0;o<2;++o)this._field[2].size>this._field[o].data.length&&(s.freeFloat(this._field[o].data),this._field[o].data=s.mallocFloat(this._field[2].size)),this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2]);if(t.coords){var d=t.coords;if(!Array.isArray(d)||3!==d.length)throw new Error("gl-surface: invalid coordinates for x/y");for(o=0;o<2;++o){var p=d[o];for(x=0;x<2;++x)if(p.shape[x]!==a[x])throw new Error("gl-surface: coords have incorrect shape");N(this._field[o],p)}}else if(t.ticks){var m=t.ticks;if(!Array.isArray(m)||2!==m.length)throw new Error("gl-surface: invalid ticks");for(o=0;o<2;++o){var g=m[o];if((Array.isArray(g)||g.length)&&(g=f(g)),g.shape[0]!==a[o])throw new Error("gl-surface: invalid tick length");var y=f(g.data,a);y.stride[o]=g.stride[0],y.stride[1^o]=0,N(this._field[o],y)}}else{for(o=0;o<2;++o){var b=[0,0];b[o]=1,this._field[o]=f(this._field[o].data,[a[0]+2,a[1]+2],b,0)}this._field[0].set(0,0,0);for(var x=0;x<a[0];++x)this._field[0].set(x+1,0,x);for(this._field[0].set(a[0]+1,0,a[0]-1),this._field[1].set(0,0,0),x=0;x<a[1];++x)this._field[1].set(0,x+1,x);this._field[1].set(0,a[1]+1,a[1]-1)}var _=this._field,w=f(s.mallocFloat(3*_[2].size*2),[3,a[0]+2,a[1]+2,2]);for(o=0;o<3;++o)v(w.pick(o),_[o],"mirror");var M=f(s.mallocFloat(3*_[2].size),[a[0]+2,a[1]+2,3]);for(o=0;o<a[0]+2;++o)for(x=0;x<a[1]+2;++x){var A=w.get(0,o,x,0),E=w.get(0,o,x,1),S=w.get(1,o,x,0),L=w.get(1,o,x,1),C=w.get(2,o,x,0),P=w.get(2,o,x,1),z=S*P-L*C,O=C*E-P*A,D=A*L-E*S,I=Math.sqrt(z*z+O*O+D*D);I<1e-8?(I=Math.max(Math.abs(z),Math.abs(O),Math.abs(D)))<1e-8?(D=1,O=z=0,I=1):I=1/I:I=1/Math.sqrt(I),M.set(o,x,0,z*I),M.set(o,x,1,O*I),M.set(o,x,2,D*I)}s.free(w.data);var R=[1/0,1/0,1/0],j=[-1/0,-1/0,-1/0],U=1/0,V=-1/0,q=(a[0]-1)*(a[1]-1)*6,H=s.mallocFloat(n.nextPow2(10*q)),G=0,Y=0;for(o=0;o<a[0]-1;++o)t:for(x=0;x<a[1]-1;++x){for(var W=0;W<2;++W)for(var X=0;X<2;++X)for(var Z=0;Z<3;++Z){var J=this._field[Z].get(1+o+W,1+x+X);if(isNaN(J)||!isFinite(J))continue t}for(Z=0;Z<6;++Z){var K=o+k[Z][0],Q=x+k[Z][1],$=this._field[0].get(K+1,Q+1),tt=this._field[1].get(K+1,Q+1),et=J=this._field[2].get(K+1,Q+1);z=M.get(K+1,Q+1,0),O=M.get(K+1,Q+1,1),D=M.get(K+1,Q+1,2),t.intensity&&(et=t.intensity.get(K,Q)),H[G++]=K,H[G++]=Q,H[G++]=$,H[G++]=tt,H[G++]=J,H[G++]=0,H[G++]=et,H[G++]=z,H[G++]=O,H[G++]=D,R[0]=Math.min(R[0],$),R[1]=Math.min(R[1],tt),R[2]=Math.min(R[2],J),U=Math.min(U,et),j[0]=Math.max(j[0],$),j[1]=Math.max(j[1],tt),j[2]=Math.max(j[2],J),V=Math.max(V,et),Y+=1}}for(t.intensityBounds&&(U=+t.intensityBounds[0],V=+t.intensityBounds[1]),o=6;o<G;o+=10)H[o]=(H[o]-U)/(V-U);this._vertexCount=Y,this._coordinateBuffer.update(H.subarray(0,G)),s.freeFloat(H),s.free(M.data),this.bounds=[R,j],this.intensity=t.intensity||this._field[2],this.intensityBounds[0]===U&&this.intensityBounds[1]===V||(r=!0),this.intensityBounds=[U,V]}if("levels"in t){var rt=t.levels;for(rt=Array.isArray(rt[0])?rt.slice():[[],[],rt],o=0;o<3;++o)rt[o]=rt[o].slice(),rt.sort(function(t,e){return t-e});t:for(o=0;o<3;++o){if(rt[o].length!==this.contourLevels[o].length){r=!0;break}for(x=0;x<rt[o].length;++x)if(rt[o][x]!==this.contourLevels[o][x]){r=!0;break t}}this.contourLevels=rt}if(r){_=this._field,a=this.shape;for(var nt=[],it=0;it<3;++it){rt=this.contourLevels[it];var at=[],ot=[],st=[0,0,0];for(o=0;o<rt.length;++o){var lt=h(this._field[it],rt[o]);at.push(nt.length/5|0),Y=0;t:for(x=0;x<lt.cells.length;++x){var ct=lt.cells[x];for(Z=0;Z<2;++Z){var ut=lt.positions[ct[Z]],ft=ut[0],ht=0|Math.floor(ft),dt=ft-ht,pt=ut[1],mt=0|Math.floor(pt),vt=pt-mt,gt=!1;e:for(var yt=0;yt<3;++yt){st[yt]=0;var bt=(it+yt+1)%3;for(W=0;W<2;++W){var xt=W?dt:1-dt;for(K=0|Math.min(Math.max(ht+W,0),a[0]),X=0;X<2;++X){var _t=X?vt:1-vt;if(Q=0|Math.min(Math.max(mt+X,0),a[1]),J=yt<2?this._field[bt].get(K,Q):(this.intensity.get(K,Q)-this.intensityBounds[0])/(this.intensityBounds[1]-this.intensityBounds[0]),!isFinite(J)||isNaN(J)){gt=!0;break e}var wt=xt*_t;st[yt]+=wt*J}}}if(gt){if(Z>0){for(var Mt=0;Mt<5;++Mt)nt.pop();Y-=1}continue t}nt.push(st[0],st[1],ut[0],ut[1],st[2]),Y+=1}}ot.push(Y)}this._contourOffsets[it]=at,this._contourCounts[it]=ot}var kt=s.mallocFloat(nt.length);for(o=0;o<nt.length;++o)kt[o]=nt[o];this._contourBuffer.update(kt),s.freeFloat(kt)}t.colormap&&this._colorMap.setPixels(function(t){var e=u([l({colormap:t,nshades:T,format:"rgba"}).map(function(t){return[t[0],t[1],t[2],255*t[3]]})]);return c.divseq(e,255),e}(t.colormap))},S.dispose=function(){this._shader.dispose(),this._vao.dispose(),this._coordinateBuffer.dispose(),this._colorMap.dispose(),this._contourBuffer.dispose(),this._contourVAO.dispose(),this._contourShader.dispose(),this._contourPickShader.dispose(),this._dynamicBuffer.dispose(),this._dynamicVAO.dispose();for(var t=0;t<3;++t)s.freeFloat(this._field[t].data)},S.highlight=function(t){if(!t)return this._dynamicCounts=[0,0,0],this.dyanamicLevel=[NaN,NaN,NaN],void(this.highlightLevel=[-1,-1,-1]);for(var e=0;e<3;++e)this.enableHighlight[e]?this.highlightLevel[e]=t.level[e]:this.highlightLevel[e]=-1;var r;if(r=this.snapToData?t.dataCoordinate:t.position,this.enableDynamic[0]&&r[0]!==this.dynamicLevel[0]||this.enableDynamic[1]&&r[1]!==this.dynamicLevel[1]||this.enableDynamic[2]&&r[2]!==this.dynamicLevel[2]){for(var n=0,i=this.shape,a=s.mallocFloat(12*i[0]*i[1]),o=0;o<3;++o)if(this.enableDynamic[o]){this.dynamicLevel[o]=r[o];var l=(o+1)%3,c=(o+2)%3,u=this._field[o],f=this._field[l],d=this._field[c],p=(this.intensity,h(u,r[o])),m=p.cells,v=p.positions;for(this._dynamicOffsets[o]=n,e=0;e<m.length;++e)for(var g=m[e],y=0;y<2;++y){var b=v[g[y]],x=+b[0],_=0|x,w=0|Math.min(_+1,i[0]),M=x-_,k=1-M,A=+b[1],T=0|A,E=0|Math.min(T+1,i[1]),S=A-T,L=1-S,C=k*L,P=k*S,z=M*L,O=M*S,D=C*f.get(_,T)+P*f.get(_,E)+z*f.get(w,T)+O*f.get(w,E),I=C*d.get(_,T)+P*d.get(_,E)+z*d.get(w,T)+O*d.get(w,E);if(isNaN(D)||isNaN(I)){y&&(n-=1);break}a[2*n+0]=D,a[2*n+1]=I,n+=1}this._dynamicCounts[o]=n-this._dynamicOffsets[o]}else this.dynamicLevel[o]=NaN,this._dynamicCounts[o]=0;this._dynamicBuffer.update(a.subarray(0,2*n)),s.freeFloat(a)}}},{"./lib/shaders":230,"binary-search-bounds":70,"bit-twiddle":71,colormap:105,"gl-buffer":165,"gl-mat4/invert":186,"gl-mat4/multiply":188,"gl-texture2d":233,"gl-vao":237,ndarray:439,"ndarray-gradient":430,"ndarray-ops":433,"ndarray-pack":434,"surface-nets":520,"typedarray-pool":534}],233:[function(t,e,r){"use strict";var n=t("ndarray"),i=t("ndarray-ops"),a=t("typedarray-pool");e.exports=function(t){if(arguments.length<=1)throw new Error("gl-texture2d: Missing arguments for texture2d constructor");o||function(t){o=[t.LINEAR,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_NEAREST],s=[t.NEAREST,t.LINEAR,t.NEAREST_MIPMAP_NEAREST,t.NEAREST_MIPMAP_LINEAR,t.LINEAR_MIPMAP_NEAREST,t.LINEAR_MIPMAP_LINEAR],l=[t.REPEAT,t.CLAMP_TO_EDGE,t.MIRRORED_REPEAT]}(t);if("number"==typeof arguments[1])return v(t,arguments[1],arguments[2],arguments[3]||t.RGBA,arguments[4]||t.UNSIGNED_BYTE);if(Array.isArray(arguments[1]))return v(t,0|arguments[1][0],0|arguments[1][1],arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if("object"==typeof arguments[1]){var e=arguments[1],r=c(e)?e:e.raw;if(r)return function(t,e,r,n,i,a){var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,i,i,a,e),new h(t,o,r,n,i,a)}(t,r,0|e.width,0|e.height,arguments[2]||t.RGBA,arguments[3]||t.UNSIGNED_BYTE);if(e.shape&&e.data&&e.stride)return function(t,e){var r=e.dtype,o=e.shape.slice(),s=t.getParameter(t.MAX_TEXTURE_SIZE);if(o[0]<0||o[0]>s||o[1]<0||o[1]>s)throw new Error("gl-texture2d: Invalid texture size");var l=p(o,e.stride.slice()),c=0;"float32"===r?c=t.FLOAT:"float64"===r?(c=t.FLOAT,l=!1,r="float32"):"uint8"===r?c=t.UNSIGNED_BYTE:(c=t.UNSIGNED_BYTE,l=!1,r="uint8");var f,d,v=0;if(2===o.length)v=t.LUMINANCE,o=[o[0],o[1],1],e=n(e.data,o,[e.stride[0],e.stride[1],1],e.offset);else{if(3!==o.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===o[2])v=t.ALPHA;else if(2===o[2])v=t.LUMINANCE_ALPHA;else if(3===o[2])v=t.RGB;else{if(4!==o[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}}c!==t.FLOAT||t.getExtension("OES_texture_float")||(c=t.UNSIGNED_BYTE,l=!1);var g=e.size;if(l)f=0===e.offset&&e.data.length===g?e.data:e.data.subarray(e.offset,e.offset+g);else{var y=[o[2],o[2]*o[0],1];d=a.malloc(g,r);var b=n(d,o,y,0);"float32"!==r&&"float64"!==r||c!==t.UNSIGNED_BYTE?i.assign(b,e):u(b,e),f=d.subarray(0,g)}var x=m(t);t.texImage2D(t.TEXTURE_2D,0,v,o[0],o[1],0,v,c,f),l||a.free(d);return new h(t,x,o[0],o[1],v,c)}(t,e)}throw new Error("gl-texture2d: Invalid arguments for texture2d constructor")};var o=null,s=null,l=null;function c(t){return"undefined"!=typeof HTMLCanvasElement&&t instanceof HTMLCanvasElement||"undefined"!=typeof HTMLImageElement&&t instanceof HTMLImageElement||"undefined"!=typeof HTMLVideoElement&&t instanceof HTMLVideoElement||"undefined"!=typeof ImageData&&t instanceof ImageData}var u=function(t,e){i.muls(t,e,255)};function f(t,e,r){var n=t.gl,i=n.getParameter(n.MAX_TEXTURE_SIZE);if(e<0||e>i||r<0||r>i)throw new Error("gl-texture2d: Invalid texture size");return t._shape=[e,r],t.bind(),n.texImage2D(n.TEXTURE_2D,0,t.format,e,r,0,t.format,t.type,null),t._mipLevels=[0],t}function h(t,e,r,n,i,a){this.gl=t,this.handle=e,this.format=i,this.type=a,this._shape=[r,n],this._mipLevels=[0],this._magFilter=t.NEAREST,this._minFilter=t.NEAREST,this._wrapS=t.CLAMP_TO_EDGE,this._wrapT=t.CLAMP_TO_EDGE,this._anisoSamples=1;var o=this,s=[this._wrapS,this._wrapT];Object.defineProperties(s,[{get:function(){return o._wrapS},set:function(t){return o.wrapS=t}},{get:function(){return o._wrapT},set:function(t){return o.wrapT=t}}]),this._wrapVector=s;var l=[this._shape[0],this._shape[1]];Object.defineProperties(l,[{get:function(){return o._shape[0]},set:function(t){return o.width=t}},{get:function(){return o._shape[1]},set:function(t){return o.height=t}}]),this._shapeVector=l}var d=h.prototype;function p(t,e){return 3===t.length?1===e[2]&&e[1]===t[0]*t[2]&&e[0]===t[2]:1===e[0]&&e[1]===t[0]}function m(t){var e=t.createTexture();return t.bindTexture(t.TEXTURE_2D,e),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),e}function v(t,e,r,n,i){var a=t.getParameter(t.MAX_TEXTURE_SIZE);if(e<0||e>a||r<0||r>a)throw new Error("gl-texture2d: Invalid texture shape");if(i===t.FLOAT&&!t.getExtension("OES_texture_float"))throw new Error("gl-texture2d: Floating point textures not supported on this platform");var o=m(t);return t.texImage2D(t.TEXTURE_2D,0,n,e,r,0,n,i,null),new h(t,o,e,r,n,i)}Object.defineProperties(d,{minFilter:{get:function(){return this._minFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MIN_FILTER,t),this._minFilter=t}},magFilter:{get:function(){return this._magFilter},set:function(t){this.bind();var e=this.gl;if(this.type===e.FLOAT&&o.indexOf(t)>=0&&(e.getExtension("OES_texture_float_linear")||(t=e.NEAREST)),s.indexOf(t)<0)throw new Error("gl-texture2d: Unknown filter mode "+t);return e.texParameteri(e.TEXTURE_2D,e.TEXTURE_MAG_FILTER,t),this._magFilter=t}},mipSamples:{get:function(){return this._anisoSamples},set:function(t){var e=this._anisoSamples;if(this._anisoSamples=0|Math.max(t,1),e!==this._anisoSamples){var r=this.gl.getExtension("EXT_texture_filter_anisotropic");r&&this.gl.texParameterf(this.gl.TEXTURE_2D,r.TEXTURE_MAX_ANISOTROPY_EXT,this._anisoSamples)}return this._anisoSamples}},wrapS:{get:function(){return this._wrapS},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_S,t),this._wrapS=t}},wrapT:{get:function(){return this._wrapT},set:function(t){if(this.bind(),l.indexOf(t)<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);return this.gl.texParameteri(this.gl.TEXTURE_2D,this.gl.TEXTURE_WRAP_T,t),this._wrapT=t}},wrap:{get:function(){return this._wrapVector},set:function(t){if(Array.isArray(t)||(t=[t,t]),2!==t.length)throw new Error("gl-texture2d: Must specify wrap mode for rows and columns");for(var e=0;e<2;++e)if(l.indexOf(t[e])<0)throw new Error("gl-texture2d: Unknown wrap mode "+t);this._wrapS=t[0],this._wrapT=t[1];var r=this.gl;return this.bind(),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_S,this._wrapS),r.texParameteri(r.TEXTURE_2D,r.TEXTURE_WRAP_T,this._wrapT),t}},shape:{get:function(){return this._shapeVector},set:function(t){if(Array.isArray(t)){if(2!==t.length)throw new Error("gl-texture2d: Invalid texture shape")}else t=[0|t,0|t];return f(this,0|t[0],0|t[1]),[0|t[0],0|t[1]]}},width:{get:function(){return this._shape[0]},set:function(t){return f(this,t|=0,this._shape[1]),t}},height:{get:function(){return this._shape[1]},set:function(t){return t|=0,f(this,this._shape[0],t),t}}}),d.bind=function(t){var e=this.gl;return void 0!==t&&e.activeTexture(e.TEXTURE0+(0|t)),e.bindTexture(e.TEXTURE_2D,this.handle),void 0!==t?0|t:e.getParameter(e.ACTIVE_TEXTURE)-e.TEXTURE0},d.dispose=function(){this.gl.deleteTexture(this.handle)},d.generateMipmap=function(){this.bind(),this.gl.generateMipmap(this.gl.TEXTURE_2D);for(var t=Math.min(this._shape[0],this._shape[1]),e=0;t>0;++e,t>>>=1)this._mipLevels.indexOf(e)<0&&this._mipLevels.push(e)},d.setPixels=function(t,e,r,o){var s=this.gl;this.bind(),Array.isArray(e)?(o=r,r=0|e[1],e=0|e[0]):(e=e||0,r=r||0),o=o||0;var l=c(t)?t:t.raw;if(l){this._mipLevels.indexOf(o)<0?(s.texImage2D(s.TEXTURE_2D,0,this.format,this.format,this.type,l),this._mipLevels.push(o)):s.texSubImage2D(s.TEXTURE_2D,o,e,r,this.format,this.type,l)}else{if(!(t.shape&&t.stride&&t.data))throw new Error("gl-texture2d: Unsupported data type");if(t.shape.length<2||e+t.shape[1]>this._shape[1]>>>o||r+t.shape[0]>this._shape[0]>>>o||e<0||r<0)throw new Error("gl-texture2d: Texture dimensions are out of bounds");!function(t,e,r,o,s,l,c,f){var h=f.dtype,d=f.shape.slice();if(d.length<2||d.length>3)throw new Error("gl-texture2d: Invalid ndarray, must be 2d or 3d");var m=0,v=0,g=p(d,f.stride.slice());"float32"===h?m=t.FLOAT:"float64"===h?(m=t.FLOAT,g=!1,h="float32"):"uint8"===h?m=t.UNSIGNED_BYTE:(m=t.UNSIGNED_BYTE,g=!1,h="uint8");if(2===d.length)v=t.LUMINANCE,d=[d[0],d[1],1],f=n(f.data,d,[f.stride[0],f.stride[1],1],f.offset);else{if(3!==d.length)throw new Error("gl-texture2d: Invalid shape for texture");if(1===d[2])v=t.ALPHA;else if(2===d[2])v=t.LUMINANCE_ALPHA;else if(3===d[2])v=t.RGB;else{if(4!==d[2])throw new Error("gl-texture2d: Invalid shape for pixel coords");v=t.RGBA}d[2]}v!==t.LUMINANCE&&v!==t.ALPHA||s!==t.LUMINANCE&&s!==t.ALPHA||(v=s);if(v!==s)throw new Error("gl-texture2d: Incompatible texture format for setPixels");var y=f.size,b=c.indexOf(o)<0;b&&c.push(o);if(m===l&&g)0===f.offset&&f.data.length===y?b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data):b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,f.data.subarray(f.offset,f.offset+y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,f.data.subarray(f.offset,f.offset+y));else{var x;x=l===t.FLOAT?a.mallocFloat32(y):a.mallocUint8(y);var _=n(x,d,[d[2],d[2]*d[0],1]);m===t.FLOAT&&l===t.UNSIGNED_BYTE?u(_,f):i.assign(_,f),b?t.texImage2D(t.TEXTURE_2D,o,s,d[0],d[1],0,s,l,x.subarray(0,y)):t.texSubImage2D(t.TEXTURE_2D,o,e,r,d[0],d[1],s,l,x.subarray(0,y)),l===t.FLOAT?a.freeFloat32(x):a.freeUint8(x)}}(s,e,r,o,this.format,this.type,this._mipLevels,t)}}},{ndarray:439,"ndarray-ops":433,"typedarray-pool":534}],234:[function(t,e,r){"use strict";e.exports=function(t,e,r){e?e.bind():t.bindBuffer(t.ELEMENT_ARRAY_BUFFER,null);var n=0|t.getParameter(t.MAX_VERTEX_ATTRIBS);if(r){if(r.length>n)throw new Error("gl-vao: Too many vertex attributes");for(var i=0;i<r.length;++i){var a=r[i];if(a.buffer){var o=a.buffer,s=a.size||4,l=a.type||t.FLOAT,c=!!a.normalized,u=a.stride||0,f=a.offset||0;o.bind(),t.enableVertexAttribArray(i),t.vertexAttribPointer(i,s,l,c,u,f)}else{if("number"==typeof a)t.vertexAttrib1f(i,a);else if(1===a.length)t.vertexAttrib1f(i,a[0]);else if(2===a.length)t.vertexAttrib2f(i,a[0],a[1]);else if(3===a.length)t.vertexAttrib3f(i,a[0],a[1],a[2]);else{if(4!==a.length)throw new Error("gl-vao: Invalid vertex attribute");t.vertexAttrib4f(i,a[0],a[1],a[2],a[3])}t.disableVertexAttribArray(i)}}for(;i<n;++i)t.disableVertexAttribArray(i)}else for(t.bindBuffer(t.ARRAY_BUFFER,null),i=0;i<n;++i)t.disableVertexAttribArray(i)}},{}],235:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t){this.gl=t,this._elements=null,this._attributes=null,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(){n(this.gl,this._elements,this._attributes)},i.prototype.update=function(t,e,r){this._elements=e,this._attributes=t,this._elementsType=r||this.gl.UNSIGNED_SHORT},i.prototype.dispose=function(){},i.prototype.unbind=function(){},i.prototype.draw=function(t,e,r){r=r||0;var n=this.gl;this._elements?n.drawElements(t,e,this._elementsType,r):n.drawArrays(t,r,e)},e.exports=function(t){return new i(t)}},{"./do-bind.js":234}],236:[function(t,e,r){"use strict";var n=t("./do-bind.js");function i(t,e,r,n,i,a){this.location=t,this.dimension=e,this.a=r,this.b=n,this.c=i,this.d=a}function a(t,e,r){this.gl=t,this._ext=e,this.handle=r,this._attribs=[],this._useElements=!1,this._elementsType=t.UNSIGNED_SHORT}i.prototype.bind=function(t){switch(this.dimension){case 1:t.vertexAttrib1f(this.location,this.a);break;case 2:t.vertexAttrib2f(this.location,this.a,this.b);break;case 3:t.vertexAttrib3f(this.location,this.a,this.b,this.c);break;case 4:t.vertexAttrib4f(this.location,this.a,this.b,this.c,this.d)}},a.prototype.bind=function(){this._ext.bindVertexArrayOES(this.handle);for(var t=0;t<this._attribs.length;++t)this._attribs[t].bind(this.gl)},a.prototype.unbind=function(){this._ext.bindVertexArrayOES(null)},a.prototype.dispose=function(){this._ext.deleteVertexArrayOES(this.handle)},a.prototype.update=function(t,e,r){if(this.bind(),n(this.gl,e,t),this.unbind(),this._attribs.length=0,t)for(var a=0;a<t.length;++a){var o=t[a];"number"==typeof 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float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\n\nvoid main() {\n    gl_FragColor = u_color;\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, step(32767.0, a_pos.x), 1);\n}\n"},fill:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_FragColor = color * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n}\n"},circle:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    float t = smoothstep(1.0 - max(blur, v_antialiasblur), 1.0, length(v_extrude));\n    gl_FragColor = color * (1.0 - t) * opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform bool u_scale_with_map;\nuniform vec2 u_extrude_scale;\nuniform float u_devicepixelratio;\n\nattribute vec2 a_pos;\n\n#pragma mapbox: define lowp vec4 color\n#pragma mapbox: define mediump float radius\n#pragma mapbox: define lowp float blur\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_extrude;\nvarying lowp float v_antialiasblur;\n\nvoid main(void) {\n    #pragma mapbox: initialize lowp vec4 color\n    #pragma mapbox: initialize mediump float radius\n    #pragma mapbox: initialize lowp float blur\n    #pragma mapbox: initialize lowp float opacity\n\n    // unencode the extrusion vector that we snuck into the a_pos vector\n    v_extrude = vec2(mod(a_pos, 2.0) * 2.0 - 1.0);\n\n    vec2 extrude = v_extrude * radius * u_extrude_scale;\n    // multiply a_pos by 0.5, since we had it * 2 in order to sneak\n    // in extrusion data\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5), 0, 1);\n\n    if (u_scale_with_map) {\n        gl_Position.xy += extrude;\n    } else {\n        gl_Position.xy += extrude * gl_Position.w;\n    }\n\n    // This is a minimum blur distance that serves as a faux-antialiasing for\n    // the circle. since blur is a ratio of the circle's size and the intent is\n    // to keep the blur at roughly 1px, the two are inversely related.\n    v_antialiasblur = 1.0 / u_devicepixelratio / radius;\n}\n"},line:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform float u_blur;\n\nvarying vec2 v_linewidth;\nvarying vec2 v_normal;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\nuniform mediump float u_blur;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_blur;\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_fade;\nuniform float u_opacity;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float x_a = mod(v_linesofar / u_pattern_size_a.x, 1.0);\n    float x_b = mod(v_linesofar / u_pattern_size_b.x, 1.0);\n    float y_a = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_a.y);\n    float y_b = 0.5 + (v_normal.y * v_linewidth.s / u_pattern_size_b.y);\n    vec2 pos_a = mix(u_pattern_tl_a, u_pattern_br_a, vec2(x_a, y_a));\n    vec2 pos_b = mix(u_pattern_tl_b, u_pattern_br_b, vec2(x_b, y_b));\n\n    vec4 color = mix(texture2D(u_image, pos_a), texture2D(u_image, pos_b), u_fade);\n\n    alpha *= u_opacity;\n\n    gl_FragColor = color * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform mediump float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying float v_linesofar;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n    v_linesofar = a_linesofar;\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},linesdfpattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\n\nuniform float u_blur;\nuniform sampler2D u_image;\nuniform float u_sdfgamma;\nuniform float u_mix;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    // Calculate the distance of the pixel from the line in pixels.\n    float dist = length(v_normal) * v_linewidth.s;\n\n    // Calculate the antialiasing fade factor. This is either when fading in\n    // the line in case of an offset line (v_linewidth.t) or when fading out\n    // (v_linewidth.s)\n    float blur = u_blur * v_gamma_scale;\n    float alpha = clamp(min(dist - (v_linewidth.t - blur), v_linewidth.s - dist) / blur, 0.0, 1.0);\n\n    float sdfdist_a = texture2D(u_image, v_tex_a).a;\n    float sdfdist_b = texture2D(u_image, v_tex_b).a;\n    float sdfdist = mix(sdfdist_a, sdfdist_b, u_mix);\n    alpha *= smoothstep(0.5 - u_sdfgamma, 0.5 + u_sdfgamma, sdfdist);\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n// floor(127 / 2) == 63.0\n// the maximum allowed miter limit is 2.0 at the moment. the extrude normal is\n// stored in a byte (-128..127). we scale regular normals up to length 63, but\n// there are also \"special\" normals that have a bigger length (of up to 126 in\n// this case).\n// #define scale 63.0\n#define scale 0.015873016\n\n// We scale the distance before adding it to the buffers so that we can store\n// long distances for long segments. Use this value to unscale the distance.\n#define LINE_DISTANCE_SCALE 2.0\n\nattribute vec2 a_pos;\nattribute vec4 a_data;\n\nuniform mat4 u_matrix;\nuniform mediump float u_ratio;\nuniform mediump float u_linewidth;\nuniform mediump float u_gapwidth;\nuniform mediump float u_antialiasing;\nuniform vec2 u_patternscale_a;\nuniform float u_tex_y_a;\nuniform vec2 u_patternscale_b;\nuniform float u_tex_y_b;\nuniform float u_extra;\nuniform mat2 u_antialiasingmatrix;\nuniform mediump float u_offset;\n\nvarying vec2 v_normal;\nvarying vec2 v_linewidth;\nvarying vec2 v_tex_a;\nvarying vec2 v_tex_b;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_extrude = a_data.xy - 128.0;\n    float a_direction = mod(a_data.z, 4.0) - 1.0;\n    float a_linesofar = (floor(a_data.z / 4.0) + a_data.w * 64.0) * LINE_DISTANCE_SCALE;\n\n    // We store the texture normals in the most insignificant bit\n    // transform y so that 0 => -1 and 1 => 1\n    // In the texture normal, x is 0 if the normal points straight up/down and 1 if it's a round cap\n    // y is 1 if the normal points up, and -1 if it points down\n    mediump vec2 normal = mod(a_pos, 2.0);\n    normal.y = sign(normal.y - 0.5);\n    v_normal = normal;\n\n    float inset = u_gapwidth + (u_gapwidth > 0.0 ? u_antialiasing : 0.0);\n    float outset = u_gapwidth + u_linewidth * (u_gapwidth > 0.0 ? 2.0 : 1.0) + u_antialiasing;\n\n    // Scale the extrusion vector down to a normal and then up by the line width\n    // of this vertex.\n    mediump vec2 dist = outset * a_extrude * scale;\n\n    // Calculate the offset when drawing a line that is to the side of the actual line.\n    // We do this by creating a vector that points towards the extrude, but rotate\n    // it when we're drawing round end points (a_direction = -1 or 1) since their\n    // extrude vector points in another direction.\n    mediump float u = 0.5 * a_direction;\n    mediump float t = 1.0 - abs(u);\n    mediump vec2 offset = u_offset * a_extrude * scale * normal.y * mat2(t, -u, u, t);\n\n    // Remove the texture normal bit of the position before scaling it with the\n    // model/view matrix.\n    gl_Position = u_matrix * vec4(floor(a_pos * 0.5) + (offset + dist) / u_ratio, 0.0, 1.0);\n\n    v_tex_a = vec2(a_linesofar * u_patternscale_a.x, normal.y * u_patternscale_a.y + u_tex_y_a);\n    v_tex_b = vec2(a_linesofar * u_patternscale_b.x, normal.y * u_patternscale_b.y + u_tex_y_b);\n\n    // position of y on the screen\n    float y = gl_Position.y / gl_Position.w;\n\n    // how much features are squished in the y direction by the tilt\n    float squish_scale = length(a_extrude) / length(u_antialiasingmatrix * a_extrude);\n\n    // how much features are squished in all directions by the perspectiveness\n    float perspective_scale = 1.0 / (1.0 - min(y * u_extra, 0.9));\n\n    v_linewidth = vec2(outset, inset);\n    v_gamma_scale = perspective_scale * squish_scale;\n}\n"},outline:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvarying vec2 v_pos;\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    gl_FragColor = outline_color * (alpha * opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos;\n\n#pragma mapbox: define lowp vec4 outline_color\n#pragma mapbox: define lowp float opacity\n\nvoid main() {\n    #pragma mapbox: initialize lowp vec4 outline_color\n    #pragma mapbox: initialize lowp float opacity\n\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},outlinepattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    // find distance to outline for alpha interpolation\n\n    float dist = length(v_pos - gl_FragCoord.xy);\n    float alpha = smoothstep(1.0, 0.0, dist);\n    \n\n    gl_FragColor = mix(color1, color2, u_mix) * alpha * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nuniform mat4 u_matrix;\nuniform vec2 u_world;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\nvarying vec2 v_pos;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n\n    v_pos = (gl_Position.xy / gl_Position.w + 1.0) / 2.0 * u_world;\n}\n"},pattern:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity;\nuniform vec2 u_pattern_tl_a;\nuniform vec2 u_pattern_br_a;\nuniform vec2 u_pattern_tl_b;\nuniform vec2 u_pattern_br_b;\nuniform float u_mix;\n\nuniform sampler2D u_image;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n\n    vec2 imagecoord = mod(v_pos_a, 1.0);\n    vec2 pos = mix(u_pattern_tl_a, u_pattern_br_a, imagecoord);\n    vec4 color1 = texture2D(u_image, pos);\n\n    vec2 imagecoord_b = mod(v_pos_b, 1.0);\n    vec2 pos2 = mix(u_pattern_tl_b, u_pattern_br_b, imagecoord_b);\n    vec4 color2 = texture2D(u_image, pos2);\n\n    gl_FragColor = mix(color1, color2, u_mix) * u_opacity;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_pattern_size_a;\nuniform vec2 u_pattern_size_b;\nuniform vec2 u_pixel_coord_upper;\nuniform vec2 u_pixel_coord_lower;\nuniform float u_scale_a;\nuniform float u_scale_b;\nuniform float u_tile_units_to_pixels;\n\nattribute vec2 a_pos;\n\nvarying vec2 v_pos_a;\nvarying vec2 v_pos_b;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    vec2 scaled_size_a = u_scale_a * u_pattern_size_a;\n    vec2 scaled_size_b = u_scale_b * u_pattern_size_b;\n\n    // the correct offset needs to be calculated.\n    //\n    // The offset depends on how many pixels are between the world origin and\n    // the edge of the tile:\n    // vec2 offset = mod(pixel_coord, size)\n    //\n    // At high zoom levels there are a ton of pixels between the world origin\n    // and the edge of the tile. The glsl spec only guarantees 16 bits of\n    // precision for highp floats. We need more than that.\n    //\n    // The pixel_coord is passed in as two 16 bit values:\n    // pixel_coord_upper = floor(pixel_coord / 2^16)\n    // pixel_coord_lower = mod(pixel_coord, 2^16)\n    //\n    // The offset is calculated in a series of steps that should preserve this precision:\n    vec2 offset_a = mod(mod(mod(u_pixel_coord_upper, scaled_size_a) * 256.0, scaled_size_a) * 256.0 + u_pixel_coord_lower, scaled_size_a);\n    vec2 offset_b = mod(mod(mod(u_pixel_coord_upper, scaled_size_b) * 256.0, scaled_size_b) * 256.0 + u_pixel_coord_lower, scaled_size_b);\n\n    v_pos_a = (u_tile_units_to_pixels * a_pos + offset_a) / scaled_size_a;\n    v_pos_b = (u_tile_units_to_pixels * a_pos + offset_b) / scaled_size_b;\n}\n"},raster:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_opacity0;\nuniform float u_opacity1;\nuniform sampler2D u_image0;\nuniform sampler2D u_image1;\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nuniform float u_brightness_low;\nuniform float u_brightness_high;\n\nuniform float u_saturation_factor;\nuniform float u_contrast_factor;\nuniform vec3 u_spin_weights;\n\nvoid main() {\n\n    // read and cross-fade colors from the main and parent tiles\n    vec4 color0 = texture2D(u_image0, v_pos0);\n    vec4 color1 = texture2D(u_image1, v_pos1);\n    vec4 color = color0 * u_opacity0 + color1 * u_opacity1;\n    vec3 rgb = color.rgb;\n\n    // spin\n    rgb = vec3(\n        dot(rgb, u_spin_weights.xyz),\n        dot(rgb, u_spin_weights.zxy),\n        dot(rgb, u_spin_weights.yzx));\n\n    // saturation\n    float average = (color.r + color.g + color.b) / 3.0;\n    rgb += (average - rgb) * u_saturation_factor;\n\n    // contrast\n    rgb = (rgb - 0.5) * u_contrast_factor + 0.5;\n\n    // brightness\n    vec3 u_high_vec = vec3(u_brightness_low, u_brightness_low, u_brightness_low);\n    vec3 u_low_vec = vec3(u_brightness_high, u_brightness_high, u_brightness_high);\n\n    gl_FragColor = vec4(mix(u_high_vec, u_low_vec, rgb), color.a);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform mat4 u_matrix;\nuniform vec2 u_tl_parent;\nuniform float u_scale_parent;\nuniform float u_buffer_scale;\n\nattribute vec2 a_pos;\nattribute vec2 a_texture_pos;\n\nvarying vec2 v_pos0;\nvarying vec2 v_pos1;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos, 0, 1);\n    v_pos0 = (((a_texture_pos / 32767.0) - 0.5) / u_buffer_scale ) + 0.5;\n    v_pos1 = (v_pos0 * u_scale_parent) + u_tl_parent;\n}\n"},icon:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp float u_opacity;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    lowp float alpha = texture2D(u_fadetexture, v_fade_tex).a * u_opacity;\n    gl_FragColor = texture2D(u_texture, v_tex) * alpha;\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n    if (u_rotate_with_map) {\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    } else {\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},sdf:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform sampler2D u_texture;\nuniform sampler2D u_fadetexture;\nuniform lowp vec4 u_color;\nuniform lowp float u_opacity;\nuniform lowp float u_buffer;\nuniform lowp float u_gamma;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    lowp float dist = texture2D(u_texture, v_tex).a;\n    lowp float fade_alpha = texture2D(u_fadetexture, v_fade_tex).a;\n    lowp float gamma = u_gamma * v_gamma_scale;\n    lowp float alpha = smoothstep(u_buffer - gamma, u_buffer + gamma, dist) * fade_alpha;\n\n    gl_FragColor = u_color * (alpha * u_opacity);\n\n#ifdef OVERDRAW_INSPECTOR\n    gl_FragColor = vec4(1.0);\n#endif\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nconst float PI = 3.141592653589793;\n\nattribute vec2 a_pos;\nattribute vec2 a_offset;\nattribute vec2 a_texture_pos;\nattribute vec4 a_data;\n\n\n// matrix is for the vertex position.\nuniform mat4 u_matrix;\n\nuniform mediump float u_zoom;\nuniform bool u_rotate_with_map;\nuniform bool u_pitch_with_map;\nuniform mediump float u_pitch;\nuniform mediump float u_bearing;\nuniform mediump float u_aspect_ratio;\nuniform vec2 u_extrude_scale;\n\nuniform vec2 u_texsize;\n\nvarying vec2 v_tex;\nvarying vec2 v_fade_tex;\nvarying float v_gamma_scale;\n\nvoid main() {\n    vec2 a_tex = a_texture_pos.xy;\n    mediump float a_labelminzoom = a_data[0];\n    mediump vec2 a_zoom = a_data.pq;\n    mediump float a_minzoom = a_zoom[0];\n    mediump float a_maxzoom = a_zoom[1];\n\n    // u_zoom is the current zoom level adjusted for the change in font size\n    mediump float z = 2.0 - step(a_minzoom, u_zoom) - (1.0 - step(a_maxzoom, u_zoom));\n\n    // pitch-alignment: map\n    // rotation-alignment: map | viewport\n    if (u_pitch_with_map) {\n        lowp float angle = u_rotate_with_map ? (a_data[1] / 256.0 * 2.0 * PI) : u_bearing;\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, asin, -1.0 * asin, acos);\n        vec2 offset = RotationMatrix * a_offset;\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos + extrude, 0, 1);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: map\n    } else if (u_rotate_with_map) {\n        // foreshortening factor to apply on pitched maps\n        // as a label goes from horizontal <=> vertical in angle\n        // it goes from 0% foreshortening to up to around 70% foreshortening\n        lowp float pitchfactor = 1.0 - cos(u_pitch * sin(u_pitch * 0.75));\n\n        lowp float lineangle = a_data[1] / 256.0 * 2.0 * PI;\n\n        // use the lineangle to position points a,b along the line\n        // project the points and calculate the label angle in projected space\n        // this calculation allows labels to be rendered unskewed on pitched maps\n        vec4 a = u_matrix * vec4(a_pos, 0, 1);\n        vec4 b = u_matrix * vec4(a_pos + vec2(cos(lineangle),sin(lineangle)), 0, 1);\n        lowp float angle = atan((b[1]/b[3] - a[1]/a[3])/u_aspect_ratio, b[0]/b[3] - a[0]/a[3]);\n        lowp float asin = sin(angle);\n        lowp float acos = cos(angle);\n        mat2 RotationMatrix = mat2(acos, -1.0 * asin, asin, acos);\n\n        vec2 offset = RotationMatrix * (vec2((1.0-pitchfactor)+(pitchfactor*cos(angle*2.0)), 1.0) * a_offset);\n        vec2 extrude = u_extrude_scale * (offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n        gl_Position.z += z * gl_Position.w;\n    // pitch-alignment: viewport\n    // rotation-alignment: viewport\n    } else {\n        vec2 extrude = u_extrude_scale * (a_offset / 64.0);\n        gl_Position = u_matrix * vec4(a_pos, 0, 1) + vec4(extrude, 0, 0);\n    }\n\n    v_gamma_scale = (gl_Position.w - 0.5);\n\n    v_tex = a_tex / u_texsize;\n    v_fade_tex = vec2(a_labelminzoom / 255.0, 0.0);\n}\n"},collisionbox:{fragmentSource:"#ifdef GL_ES\nprecision mediump float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nuniform float u_zoom;\nuniform float u_maxzoom;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n\n    float alpha = 0.5;\n\n    gl_FragColor = vec4(0.0, 1.0, 0.0, 1.0) * alpha;\n\n    if (v_placement_zoom > u_zoom) {\n        gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0) * alpha;\n    }\n\n    if (u_zoom >= v_max_zoom) {\n        gl_FragColor = vec4(0.0, 0.0, 0.0, 1.0) * alpha * 0.25;\n    }\n\n    if (v_placement_zoom >= u_maxzoom) {\n        gl_FragColor = vec4(0.0, 0.0, 1.0, 1.0) * alpha * 0.2;\n    }\n}\n",vertexSource:"#ifdef GL_ES\nprecision highp float;\n#else\n#define lowp\n#define mediump\n#define highp\n#endif\n\nattribute vec2 a_pos;\nattribute vec2 a_extrude;\nattribute vec2 a_data;\n\nuniform mat4 u_matrix;\nuniform float u_scale;\n\nvarying float v_max_zoom;\nvarying float v_placement_zoom;\n\nvoid main() {\n    gl_Position = u_matrix * vec4(a_pos + a_extrude / u_scale, 0.0, 1.0);\n\n    v_max_zoom = a_data.x;\n    v_placement_zoom = a_data.y;\n}\n"}},e.exports.util="float evaluate_zoom_function_1(const vec4 values, const float t) {\n    if (t < 1.0) {\n        return mix(values[0], values[1], t);\n    } else if (t < 2.0) {\n        return mix(values[1], values[2], t - 1.0);\n    } else {\n        return mix(values[2], values[3], t - 2.0);\n    }\n}\nvec4 evaluate_zoom_function_4(const vec4 value0, const vec4 value1, const vec4 value2, const vec4 value3, const float t) {\n    if (t < 1.0) {\n        return mix(value0, value1, t);\n    } else if (t < 2.0) {\n        return mix(value1, value2, t - 1.0);\n    } else {\n        return mix(value2, value3, t - 2.0);\n    }\n}\n"},{path:449}],276:[function(t,e,r){"use strict";var n=t("util").format;e.exports=function(t,e){this.message=(t?t+": ":"")+n.apply(n,Array.prototype.slice.call(arguments,2)),null!==e&&void 0!==e&&e.__line__&&(this.line=e.__line__)}},{util:543}],277:[function(t,e,r){"use strict";e.exports=function(t){for(var e=1;e<arguments.length;e++){var r=arguments[e];for(var n in r)t[n]=r[n]}return t}},{}],278:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number?"number":t instanceof String?"string":t instanceof Boolean?"boolean":Array.isArray(t)?"array":null===t?"null":typeof t}},{}],279:[function(t,e,r){"use strict";e.exports=function(t){return t instanceof Number||t instanceof String||t instanceof Boolean?t.valueOf():t}},{}],280:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("../util/extend");e.exports=function(e){var 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n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate"),o=t("./validate_object"),s=t("./validate_array"),l=t("./validate_number");e.exports=function(t){var e,r=t.valueSpec,c=void 0!==t.value.property||"object"===e,u=void 0===t.value.property||"object"===e,f=o({key:t.key,value:t.value,valueSpec:t.styleSpec.function,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{stops:function(t){var e=[],r=t.value;e=e.concat(s({key:t.key,value:r,valueSpec:t.valueSpec,style:t.style,styleSpec:t.styleSpec,arrayElementValidator:h})),"array"===i(r)&&0===r.length&&e.push(new n(t.key,r,"array must have at least one stop"));return e}}});return t.styleSpec.$version>=8&&(c&&!t.valueSpec["property-function"]?f.push(new n(t.key,t.value,"property functions not supported")):u&&!t.valueSpec["zoom-function"]&&f.push(new n(t.key,t.value,"zoom functions not supported"))),f;function h(t){var s=[],c=t.value,f=t.key;if("array"!==i(c))return[new n(f,c,"array expected, %s 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order"))),s}function d(t){var e=[],r=i(t.value);return"number"!==r&&"string"!==r&&"array"!==r&&e.push(new n(t.key,t.value,"property value must be a number, string or array")),e}}},{"../error/validation_error":276,"../util/get_type":278,"./validate":280,"./validate_array":281,"./validate_number":291,"./validate_object":292}],288:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("./validate_string");e.exports=function(t){var e=t.value,r=t.key,a=i(t);return a.length?a:(-1===e.indexOf("{fontstack}")&&a.push(new n(r,e,'"glyphs" url must include a "{fontstack}" token')),-1===e.indexOf("{range}")&&a.push(new n(r,e,'"glyphs" url must include a "{range}" token')),a)}},{"../error/validation_error":276,"./validate_string":295}],289:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/unbundle_jsonlint"),a=t("./validate_object"),o=t("./validate_filter"),s=t("./validate_paint_property"),l=t("./validate_layout_property"),c=t("../util/extend");e.exports=function(t){var e=[],r=t.value,u=t.key,f=t.style,h=t.styleSpec;r.type||r.ref||e.push(new n(u,r,'either "type" or "ref" is required'));var d,p=i(r.type),m=i(r.ref);if(r.id)for(var v=0;v<t.arrayIndex;v++){var g=f.layers[v];i(g.id)===i(r.id)&&e.push(new n(u,r.id,'duplicate layer id "%s", previously used at line %d',r.id,g.id.__line__))}if("ref"in r)["type","source","source-layer","filter","layout"].forEach(function(t){t in r&&e.push(new n(u,r[t],'"%s" is prohibited for ref layers',t))}),f.layers.forEach(function(t){t.id==m&&(d=t)}),d?d.ref?e.push(new n(u,r.ref,"ref cannot reference another ref layer")):p=i(d.type):e.push(new n(u,r.ref,'ref layer "%s" not found',m));else if("background"!==p)if(r.source){var y=f.sources&&f.sources[r.source];y?"vector"==y.type&&"raster"==p?e.push(new n(u,r.source,'layer "%s" requires a raster source',r.id)):"raster"==y.type&&"raster"!=p?e.push(new n(u,r.source,'layer "%s" requires a vector source',r.id)):"vector"!=y.type||r["source-layer"]||e.push(new n(u,r,'layer "%s" must specify a "source-layer"',r.id)):e.push(new n(u,r.source,'source "%s" not found',r.source))}else e.push(new n(u,r,'missing required property "source"'));return e=e.concat(a({key:u,value:r,valueSpec:h.layer,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{filter:o,layout:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return l(c({layerType:p},t))}}})},paint:function(t){return a({layer:r,key:t.key,value:t.value,style:t.style,styleSpec:t.styleSpec,objectElementValidators:{"*":function(t){return s(c({layerType:p},t))}}})}}}))}},{"../error/validation_error":276,"../util/extend":277,"../util/unbundle_jsonlint":279,"./validate_filter":286,"./validate_layout_property":290,"./validate_object":292,"./validate_paint_property":293}],290:[function(t,e,r){"use strict";var n=t("./validate"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.style,a=t.styleSpec,o=t.value,s=t.objectKey,l=a["layout_"+t.layerType];if(t.valueSpec||l[s]){var c=[];return"symbol"===t.layerType&&("icon-image"===s&&r&&!r.sprite?c.push(new i(e,o,'use of "icon-image" requires a style "sprite" property')):"text-field"===s&&r&&!r.glyphs&&c.push(new i(e,o,'use of "text-field" requires a style "glyphs" property'))),c.concat(n({key:t.key,value:o,valueSpec:t.valueSpec||l[s],style:r,styleSpec:a}))}return[new i(e,o,'unknown property "%s"',s)]}},{"../error/validation_error":276,"./validate":280}],291:[function(t,e,r){"use strict";var n=t("../util/get_type"),i=t("../error/validation_error");e.exports=function(t){var e=t.key,r=t.value,a=t.valueSpec,o=n(r);return"number"!==o?[new i(e,r,"number expected, %s found",o)]:"minimum"in a&&r<a.minimum?[new i(e,r,"%s is less than the minimum value %s",r,a.minimum)]:"maximum"in a&&r>a.maximum?[new i(e,r,"%s is greater than the maximum value %s",r,a.maximum)]:[]}},{"../error/validation_error":276,"../util/get_type":278}],292:[function(t,e,r){"use strict";var n=t("../error/validation_error"),i=t("../util/get_type"),a=t("./validate");e.exports=function(t){var e=t.key,r=t.value,o=t.valueSpec,s=t.objectElementValidators||{},l=t.style,c=t.styleSpec,u=[],f=i(r);if("object"!==f)return[new n(e,r,"object expected, %s found",f)];for(var h in r){var d=h.split(".")[0],p=o&&(o[d]||o["*"]),m=s[d]||s["*"];p||m?u=u.concat((m||a)({key:(e?e+".":e)+h,value:r[h],valueSpec:p,style:l,styleSpec:c,object:r,objectKey:h})):""!==e&&1!==e.split(".").length&&u.push(new n(e,r[h],'unknown property 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v=t.childLayers[m],g=n[v.id],y=p.name;l("a_"===p.name.slice(0,2));var b,x=p.name.slice(2);if(g.fragmentPragmas.initialize[x]="",v.isPaintValueFeatureConstant(p.paintProperty))g.uniforms.push(p),g.fragmentPragmas.define[x]=g.vertexPragmas.define[x]=["uniform",c,u,y].join(" ")+";",g.fragmentPragmas.initialize[x]=g.vertexPragmas.initialize[x]=[c,u,x,"=",y].join(" ")+";\n";else if(v.isPaintValueZoomConstant(p.paintProperty)){g.attributes.push(o.extend({},p,{name:y})),b=["varying",c,u,x].join(" ")+";\n";var _=[g.fragmentPragmas.define[x],"attribute",c,u,y].join(" ")+";\n";g.fragmentPragmas.define[x]=b,g.vertexPragmas.define[x]=b+_,g.vertexPragmas.initialize[x]=[x,"=",y,"/",p.multiplier.toFixed(1)].join(" ")+";\n"}else{for(var w="u_"+y.slice(2)+"_t",M=v.getPaintValueStopZoomLevels(p.paintProperty),k=0;k<M.length&&M[k]<t.zoom;)k++;for(var A=Math.max(0,Math.min(M.length-4,k-2)),T=[],E=0;E<4;E++)T.push(M[Math.min(A+E,M.length-1)]);b=["varying",c,u,x].join(" 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a(t,{layoutVertexArrayType:i.layoutVertexArrayType.serialize(),elementArrayType:i.elementArrayType&&i.elementArrayType.serialize(),elementArrayType2:i.elementArrayType2&&i.elementArrayType2.serialize(),paintVertexArrayTypes:o})})})}}e.exports=c,c.create=function(e){return new({fill:t("./bucket/fill_bucket"),line:t("./bucket/line_bucket"),circle:t("./bucket/circle_bucket"),symbol:t("./bucket/symbol_bucket")}[e.layer.type])(e)},c.EXTENT=8192,c.prototype.populateArrays=function(){this.createArrays(),this.recalculateStyleLayers();for(var t=0;t<this.features.length;t++)this.addFeature(this.features[t]);this.trimArrays()},c.prototype.prepareArrayGroup=function(t,e){var r=this.arrayGroups[t],n=r.length&&r[r.length-1];return n&&n.hasCapacityFor(e)||((n=new i({layoutVertexArrayType:this.programInterfaces[t].layoutVertexArrayType,elementArrayType:this.programInterfaces[t].elementArrayType,elementArrayType2:this.programInterfaces[t].elementArrayType2,paintVertexArrayTypes:this.paintVertexArrayTypes[t]})).index=r.length,r.push(n)),n},c.prototype.createArrays=function(){for(var t in this.arrayGroups={},this.paintVertexArrayTypes={},this.programInterfaces){this.arrayGroups[t]=[];var e=this.paintVertexArrayTypes[t]={},r=this.paintAttributes[t];for(var n in r)e[n]=new c.VertexArrayType(r[n].attributes)}},c.prototype.destroy=function(t){for(var e in this.bufferGroups)for(var r=this.bufferGroups[e],n=0;n<r.length;n++)r[n].destroy(t)},c.prototype.trimArrays=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)e[r].trim()},c.prototype.isEmpty=function(){for(var t in this.arrayGroups)for(var e=this.arrayGroups[t],r=0;r<e.length;r++)if(!e[r].isEmpty())return!1;return!0},c.prototype.getTransferables=function(t){for(var e in this.arrayGroups)for(var r=this.arrayGroups[e],n=0;n<r.length;n++)r[n].getTransferables(t)},c.prototype.setUniforms=function(t,e,r,n,i){for(var a=this.paintAttributes[e][n.id].uniforms,o=0;o<a.length;o++){var s=a[o],l=r[s.name];t["uniform"+s.components+"fv"](l,s.getValue(n,i))}},c.prototype.serialize=function(){return{layerId:this.layer.id,zoom:this.zoom,arrays:o.mapObject(this.arrayGroups,function(t){return t.map(function(t){return t.serialize()})}),paintVertexArrayTypes:o.mapObject(this.paintVertexArrayTypes,function(t){return o.mapObject(t,function(t){return t.serialize()})}),childLayerIds:this.childLayers.map(function(t){return t.id})}},c.prototype.createFilter=function(){this.filter||(this.filter=n(this.layer.filter))};var u={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};function f(t,e){return function(r,n,i){if(1===e.length)return t.getValue(r,o.extend({},n,{zoom:e[0]}),i);for(var a=[],s=0;s<e.length;s++){var l=e[s];a.push(t.getValue(r,o.extend({},n,{zoom:l}),i)[0])}return a}}function h(t,e){return function(r,n){var i=r.getPaintInterpolationT(t.paintProperty,n.zoom);return[Math.max(0,Math.min(4,i-e))]}}c.prototype.recalculateStyleLayers=function(){for(var t=0;t<this.childLayers.length;t++)this.childLayers[t].recalculate(this.zoom,u)},c.prototype.populatePaintArrays=function(t,e,r,n,i){for(var a=0;a<this.childLayers.length;a++)for(var o=this.childLayers[a],s=this.arrayGroups[t],l=n.index;l<s.length;l++){var c=s[l],u=c.layoutVertexArray.length,f=c.paintVertexArrays[o.id];f.resize(u);for(var h=this.paintAttributes[t][o.id].attributes,d=0;d<h.length;d++)for(var p=h[d],m=p.getValue(o,e,r),v=p.multiplier||1,g=p.components||1,y=l===n.index?i:0;y<u;y++)for(var b=f.get(y),x=0;x<g;x++){b[g>1?p.name+x:p.name]=m[x]*v}}},c.VertexArrayType=function(t){return new s({members:t,alignment:4})},c.ElementArrayType=function(t){return new s({members:[{type:"Uint16",name:"vertices",components:t||3}]})}},{"../util/struct_array":412,"../util/util":414,"./array_group":300,"./bucket/circle_bucket":302,"./bucket/fill_bucket":303,"./bucket/line_bucket":304,"./bucket/symbol_bucket":305,"./buffer_group":307,assert:51,"feature-filter":141}],302:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT;function s(){n.apply(this,arguments)}e.exports=s,s.prototype=i.inherit(n,{}),s.prototype.addCircleVertex=function(t,e,r,n,i){return t.emplaceBack(2*e+(n+1)/2,2*r+(i+1)/2)},s.prototype.programInterfaces={circle:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType,paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("circle-color",e,r)},multiplier:255,paintProperty:"circle-color"},{name:"a_radius",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-radius",e,r)]},multiplier:10,paintProperty:"circle-radius"},{name:"a_blur",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-blur",e,r)]},multiplier:10,paintProperty:"circle-blur"},{name:"a_opacity",components:1,type:"Uint16",isLayerConstant:!1,getValue:function(t,e,r){return[t.getPaintValue("circle-opacity",e,r)]},multiplier:255,paintProperty:"circle-opacity"}]}},s.prototype.addFeature=function(t){for(var e={zoom:this.zoom},r=a(t),n=this.prepareArrayGroup("circle",0),i=n.layoutVertexArray.length,s=0;s<r.length;s++)for(var l=0;l<r[s].length;l++){var c=r[s][l].x,u=r[s][l].y;if(!(c<0||c>=o||u<0||u>=o)){var f=this.prepareArrayGroup("circle",4),h=f.layoutVertexArray,d=this.addCircleVertex(h,c,u,-1,-1);this.addCircleVertex(h,c,u,1,-1),this.addCircleVertex(h,c,u,1,1),this.addCircleVertex(h,c,u,-1,1),f.elementArray.emplaceBack(d,d+1,d+2),f.elementArray.emplaceBack(d,d+3,d+2)}}this.populatePaintArrays("circle",e,t.properties,n,i)}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],303:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=t("earcut"),s=t("../../util/classify_rings");function l(){n.apply(this,arguments)}e.exports=l,l.prototype=i.inherit(n,{}),l.prototype.programInterfaces={fill:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"}]),elementArrayType:new n.ElementArrayType(1),elementArrayType2:new n.ElementArrayType(2),paintAttributes:[{name:"a_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-color",e,r)},multiplier:255,paintProperty:"fill-color"},{name:"a_outline_color",components:4,type:"Uint8",getValue:function(t,e,r){return t.getPaintValue("fill-outline-color",e,r)},multiplier:255,paintProperty:"fill-outline-color"},{name:"a_opacity",components:1,type:"Uint8",getValue:function(t,e,r){return[t.getPaintValue("fill-opacity",e,r)]},multiplier:255,paintProperty:"fill-opacity"}]}},l.prototype.addFeature=function(t){for(var e=a(t),r=s(e,500),n=this.prepareArrayGroup("fill",0),i=n.layoutVertexArray.length,o=0;o<r.length;o++)this.addPolygon(r[o]);this.populatePaintArrays("fill",{zoom:this.zoom},t.properties,n,i)},l.prototype.addPolygon=function(t){for(var e=0,r=0;r<t.length;r++)e+=t[r].length;for(var n=this.prepareArrayGroup("fill",e),i=[],a=[],s=n.layoutVertexArray.length,l=0;l<t.length;l++){var c=t[l];l>0&&a.push(i.length/2);for(var u=0;u<c.length;u++){var f=c[u],h=n.layoutVertexArray.emplaceBack(f.x,f.y);u>=1&&n.elementArray2.emplaceBack(h-1,h),i.push(f.x),i.push(f.y)}}for(var d=o(i,a),p=0;p<d.length;p++)n.elementArray.emplaceBack(d[p]+s)}},{"../../util/classify_rings":402,"../../util/util":414,"../bucket":301,"../load_geometry":309,earcut:135}],304:[function(t,e,r){"use strict";var n=t("../bucket"),i=t("../../util/util"),a=t("../load_geometry"),o=n.EXTENT,s=Math.cos(Math.PI/180*37.5),l=Math.pow(2,14)/.5;function c(){n.apply(this,arguments)}e.exports=c,c.prototype=i.inherit(n,{}),c.prototype.addLineVertex=function(t,e,r,n,i,a,o){return t.emplaceBack(e.x<<1|n,e.y<<1|i,Math.round(63*r.x)+128,Math.round(63*r.y)+128,1+(0===a?0:a<0?-1:1)|(.5*o&63)<<2,.5*o>>6)},c.prototype.programInterfaces={line:{layoutVertexArrayType:new n.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_data",components:4,type:"Uint8"}]),elementArrayType:new n.ElementArrayType}},c.prototype.addFeature=function(t){for(var e=a(t,15),r=0;r<e.length;r++)this.addLine(e[r],this.layer.layout["line-join"],this.layer.layout["line-cap"],this.layer.layout["line-miter-limit"],this.layer.layout["line-round-limit"])},c.prototype.addLine=function(t,e,r,n,i){for(var a=t.length;a>2&&t[a-1].equals(t[a-2]);)a--;if(!(t.length<2)){"bevel"===e&&(n=1.05);var l=o/(512*this.overscaling)*15,c=t[0],u=t[a-1],f=c.equals(u);if(this.prepareArrayGroup("line",10*a),2!==a||!f){this.distance=0;var h,d,p,m,v,g,y,b=r,x=f?"butt":r,_=!0;this.e1=this.e2=this.e3=-1,f&&(h=t[a-2],v=c.sub(h)._unit()._perp());for(var w=0;w<a;w++)if(!(p=f&&w===a-1?t[1]:t[w+1])||!t[w].equals(p)){v&&(m=v),h&&(d=h),h=t[w],v=p?p.sub(h)._unit()._perp():m;var M=(m=m||v).add(v)._unit(),k=M.x*v.x+M.y*v.y,A=1/k,T=k<s&&d&&p;if(T&&w>0){var E=h.dist(d);if(E>2*l){var S=h.sub(h.sub(d)._mult(l/E)._round());this.distance+=S.dist(d),this.addCurrentVertex(S,this.distance,m.mult(1),0,0,!1),d=S}}var L=d&&p,C=L?e:p?b:x;if(L&&"round"===C&&(A<i?C="miter":A<=2&&(C="fakeround")),"miter"===C&&A>n&&(C="bevel"),"bevel"===C&&(A>2&&(C="flipbevel"),A<n&&(C="miter")),d&&(this.distance+=h.dist(d)),"miter"===C)M._mult(A),this.addCurrentVertex(h,this.distance,M,0,0,!1);else if("flipbevel"===C){if(A>100)M=v.clone();else{var P=m.x*v.y-m.y*v.x>0?-1:1,z=A*m.add(v).mag()/m.sub(v).mag();M._perp()._mult(z*P)}this.addCurrentVertex(h,this.distance,M,0,0,!1),this.addCurrentVertex(h,this.distance,M.mult(-1),0,0,!1)}else if("bevel"===C||"fakeround"===C){var O=m.x*v.y-m.y*v.x>0,D=-Math.sqrt(A*A-1);if(O?(y=0,g=D):(g=0,y=D),_||this.addCurrentVertex(h,this.distance,m,g,y,!1),"fakeround"===C){for(var I,R=Math.floor(8*(.5-(k-.5))),N=0;N<R;N++)I=v.mult((N+1)/(R+1))._add(m)._unit(),this.addPieSliceVertex(h,this.distance,I,O);this.addPieSliceVertex(h,this.distance,M,O);for(var F=R-1;F>=0;F--)I=m.mult((F+1)/(R+1))._add(v)._unit(),this.addPieSliceVertex(h,this.distance,I,O)}p&&this.addCurrentVertex(h,this.distance,v,-g,-y,!1)}else"butt"===C?(_||this.addCurrentVertex(h,this.distance,m,0,0,!1),p&&this.addCurrentVertex(h,this.distance,v,0,0,!1)):"square"===C?(_||(this.addCurrentVertex(h,this.distance,m,1,1,!1),this.e1=this.e2=-1),p&&this.addCurrentVertex(h,this.distance,v,-1,-1,!1)):"round"===C&&(_||(this.addCurrentVertex(h,this.distance,m,0,0,!1),this.addCurrentVertex(h,this.distance,m,1,1,!0),this.e1=this.e2=-1),p&&(this.addCurrentVertex(h,this.distance,v,-1,-1,!0),this.addCurrentVertex(h,this.distance,v,0,0,!1)));if(T&&w<a-1){var j=h.dist(p);if(j>2*l){var B=h.add(p.sub(h)._mult(l/j)._round());this.distance+=B.dist(h),this.addCurrentVertex(B,this.distance,v.mult(1),0,0,!1),h=B}}_=!1}}}},c.prototype.addCurrentVertex=function(t,e,r,n,i,a){var o,s=a?1:0,c=this.arrayGroups.line[this.arrayGroups.line.length-1],u=c.layoutVertexArray,f=c.elementArray;o=r.clone(),n&&o._sub(r.perp()._mult(n)),this.e3=this.addLineVertex(u,t,o,s,0,n,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,o=r.mult(-1),i&&o._sub(r.perp()._mult(i)),this.e3=this.addLineVertex(u,t,o,s,1,-i,e),this.e1>=0&&this.e2>=0&&f.emplaceBack(this.e1,this.e2,this.e3),this.e1=this.e2,this.e2=this.e3,e>l/2&&(this.distance=0,this.addCurrentVertex(t,this.distance,r,n,i,a))},c.prototype.addPieSliceVertex=function(t,e,r,n){var i=n?1:0;r=r.mult(n?-1:1);var a=this.arrayGroups.line[this.arrayGroups.line.length-1],o=a.layoutVertexArray,s=a.elementArray;this.e3=this.addLineVertex(o,t,r,0,i,0,e),this.e1>=0&&this.e2>=0&&s.emplaceBack(this.e1,this.e2,this.e3),n?this.e2=this.e3:this.e1=this.e3}},{"../../util/util":414,"../bucket":301,"../load_geometry":309}],305:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../bucket"),a=t("../../symbol/anchor"),o=t("../../symbol/get_anchors"),s=t("../../util/token"),l=t("../../symbol/quads"),c=t("../../symbol/shaping"),u=t("../../symbol/resolve_text"),f=t("../../symbol/mergelines"),h=t("../../symbol/clip_line"),d=t("../../util/util"),p=t("../load_geometry"),m=t("../../symbol/collision_feature"),v=c.shapeText,g=c.shapeIcon,y=l.getGlyphQuads,b=l.getIconQuads,x=i.EXTENT;function _(t){i.apply(this,arguments),this.showCollisionBoxes=t.showCollisionBoxes,this.overscaling=t.overscaling,this.collisionBoxArray=t.collisionBoxArray,this.symbolQuadsArray=t.symbolQuadsArray,this.symbolInstancesArray=t.symbolInstancesArray,this.sdfIcons=t.sdfIcons,this.iconsNeedLinear=t.iconsNeedLinear,this.adjustedTextSize=t.adjustedTextSize,this.adjustedIconSize=t.adjustedIconSize,this.fontstack=t.fontstack}e.exports=_,_.MAX_QUADS=65535,_.prototype=d.inherit(i,{}),_.prototype.serialize=function(){var t=i.prototype.serialize.apply(this);return t.sdfIcons=this.sdfIcons,t.iconsNeedLinear=this.iconsNeedLinear,t.adjustedTextSize=this.adjustedTextSize,t.adjustedIconSize=this.adjustedIconSize,t.fontstack=this.fontstack,t};var w=new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_offset",components:2,type:"Int16"},{name:"a_texture_pos",components:2,type:"Uint16"},{name:"a_data",components:4,type:"Uint8"}]),M=new i.ElementArrayType;function k(t,e,r,n,i,a,o,s,l,c,u){return t.emplaceBack(e,r,Math.round(64*n),Math.round(64*i),a/4,o/4,10*(c||0),u,10*(s||0),10*Math.min(l||25,25))}_.prototype.addCollisionBoxVertex=function(t,e,r,n,i){return t.emplaceBack(e.x,e.y,Math.round(r.x),Math.round(r.y),10*n,10*i)},_.prototype.programInterfaces={glyph:{layoutVertexArrayType:w,elementArrayType:M},icon:{layoutVertexArrayType:w,elementArrayType:M},collisionBox:{layoutVertexArrayType:new i.VertexArrayType([{name:"a_pos",components:2,type:"Int16"},{name:"a_extrude",components:2,type:"Int16"},{name:"a_data",components:2,type:"Uint8"}])}},_.prototype.populateArrays=function(t,e,r){var n={lastIntegerZoom:1/0,lastIntegerZoomTime:0,lastZoom:0};this.adjustedTextMaxSize=this.layer.getLayoutValue("text-size",{zoom:18,zoomHistory:n}),this.adjustedTextSize=this.layer.getLayoutValue("text-size",{zoom:this.zoom+1,zoomHistory:n}),this.adjustedIconMaxSize=this.layer.getLayoutValue("icon-size",{zoom:18,zoomHistory:n}),this.adjustedIconSize=this.layer.getLayoutValue("icon-size",{zoom:this.zoom+1,zoomHistory:n});var i=512*this.overscaling;this.tilePixelRatio=x/i,this.compareText={},this.iconsNeedLinear=!1,this.symbolInstancesStartIndex=this.symbolInstancesArray.length;var a=this.layer.layout,o=this.features,l=this.textFeatures,c=.5,u=.5;switch(a["text-anchor"]){case"right":case"top-right":case"bottom-right":c=1;break;case"left":case"top-left":case"bottom-left":c=0}switch(a["text-anchor"]){case"bottom":case"bottom-right":case"bottom-left":u=1;break;case"top":case"top-right":case"top-left":u=0}for(var h,m,y="right"===a["text-justify"]?1:"left"===a["text-justify"]?0:.5,b=24*a["text-line-height"],_="line"!==a["symbol-placement"]?24*a["text-max-width"]:0,w=24*a["text-letter-spacing"],M=[24*a["text-offset"][0],24*a["text-offset"][1]],k=this.fontstack=a["text-font"].join(","),A=[],T=0;T<o.length;T++)A.push(p(o[T]));if("line"===a["symbol-placement"]){var E=f(o,l,A);A=E.geometries,o=E.features,l=E.textFeatures}for(var S=0;S<o.length;S++)if(A[S]){if(h=l[S]?v(l[S],e[k],_,b,c,u,y,w,M):null,a["icon-image"]){var L=r[s(o[S].properties,a["icon-image"])];m=g(L,a),L&&(void 0===this.sdfIcons?this.sdfIcons=L.sdf:this.sdfIcons!==L.sdf&&d.warnOnce("Style sheet warning: Cannot mix SDF and non-SDF icons in one buffer"),1!==L.pixelRatio?this.iconsNeedLinear=!0:0===a["icon-rotate"]&&this.layer.isLayoutValueFeatureConstant("icon-rotate")||(this.iconsNeedLinear=!0))}else m=null;(h||m)&&this.addFeature(A[S],h,m,o[S])}this.symbolInstancesEndIndex=this.symbolInstancesArray.length,this.placeFeatures(t,this.showCollisionBoxes),this.trimArrays()},_.prototype.addFeature=function(t,e,r,n){var i=this.layer.layout,s=this.adjustedTextSize/24,l=void 0!==this.adjustedTextMaxSize?this.adjustedTextMaxSize:this.adjustedTextSize,c=this.tilePixelRatio*s,u=this.tilePixelRatio*l/24,f=this.tilePixelRatio*this.adjustedIconSize,d=this.tilePixelRatio*i["symbol-spacing"],p=i["symbol-avoid-edges"],m=i["text-padding"]*this.tilePixelRatio,v=i["icon-padding"]*this.tilePixelRatio,g=i["text-max-angle"]/180*Math.PI,y="map"===i["text-rotation-alignment"]&&"line"===i["symbol-placement"],b="map"===i["icon-rotation-alignment"]&&"line"===i["symbol-placement"],_=i["text-allow-overlap"]||i["icon-allow-overlap"]||i["text-ignore-placement"]||i["icon-ignore-placement"],w="line"===i["symbol-placement"],M=d/2;w&&(t=h(t,0,0,x,x));for(var k=0;k<t.length;k++)for(var A,T=t[k],E=0,S=(A=w?o(T,d,g,e,r,24,u,this.overscaling,x):[new a(T[0].x,T[0].y,0)]).length;E<S;E++){var L=A[E];if(!(e&&w&&this.anchorIsTooClose(e.text,M,L))){var C=!(L.x<0||L.x>x||L.y<0||L.y>x);if(!p||C){var P=C||_;this.addSymbolInstance(L,T,e,r,this.layer,P,this.symbolInstancesArray.length,this.collisionBoxArray,n.index,this.sourceLayerIndex,this.index,c,m,y,f,v,b,{zoom:this.zoom},n.properties)}}}},_.prototype.anchorIsTooClose=function(t,e,r){var n=this.compareText;if(t in n){for(var i=n[t],a=i.length-1;a>=0;a--)if(r.dist(i[a])<e)return!0}else n[t]=[];return n[t].push(r),!1},_.prototype.placeFeatures=function(t,e){this.recalculateStyleLayers(),this.createArrays();var r=this.layer.layout,n=t.maxScale,i="map"===r["text-rotation-alignment"]&&"line"===r["symbol-placement"],a="map"===r["icon-rotation-alignment"]&&"line"===r["symbol-placement"];if(r["text-allow-overlap"]||r["icon-allow-overlap"]||r["text-ignore-placement"]||r["icon-ignore-placement"]){var o=this.symbolInstancesArray.toArray(this.symbolInstancesStartIndex,this.symbolInstancesEndIndex),s=t.angle,l=Math.sin(s),c=Math.cos(s);this.sortedSymbolInstances=o.sort(function(t,e){return(l*t.anchorPointX+c*t.anchorPointY|0)-(l*e.anchorPointX+c*e.anchorPointY|0)||e.index-t.index})}for(var u=this.symbolInstancesStartIndex;u<this.symbolInstancesEndIndex;u++){var f=this.sortedSymbolInstances?this.sortedSymbolInstances[u-this.symbolInstancesStartIndex]:this.symbolInstancesArray.get(u),h={boxStartIndex:f.textBoxStartIndex,boxEndIndex:f.textBoxEndIndex},d={boxStartIndex:f.iconBoxStartIndex,boxEndIndex:f.iconBoxEndIndex},p=!(f.textBoxStartIndex===f.textBoxEndIndex),m=!(f.iconBoxStartIndex===f.iconBoxEndIndex),v=r["text-optional"]||!p,g=r["icon-optional"]||!m,y=p?t.placeCollisionFeature(h,r["text-allow-overlap"],r["symbol-avoid-edges"]):t.minScale,b=m?t.placeCollisionFeature(d,r["icon-allow-overlap"],r["symbol-avoid-edges"]):t.minScale;v||g?!g&&y?y=Math.max(b,y):!v&&b&&(b=Math.max(b,y)):b=y=Math.max(b,y),p&&(t.insertCollisionFeature(h,y,r["text-ignore-placement"]),y<=n&&this.addSymbols("glyph",f.glyphQuadStartIndex,f.glyphQuadEndIndex,y,r["text-keep-upright"],i,t.angle)),m&&(t.insertCollisionFeature(d,b,r["icon-ignore-placement"]),b<=n&&this.addSymbols("icon",f.iconQuadStartIndex,f.iconQuadEndIndex,b,r["icon-keep-upright"],a,t.angle))}e&&this.addToDebugBuffers(t)},_.prototype.addSymbols=function(t,e,r,n,i,a,o){for(var s=this.prepareArrayGroup(t,4*(r-e)),l=s.elementArray,c=s.layoutVertexArray,u=this.zoom,f=Math.max(Math.log(n)/Math.LN2+u,0),h=e;h<r;h++){var d=this.symbolQuadsArray.get(h).SymbolQuad,p=(d.anchorAngle+o+Math.PI)%(2*Math.PI);if(!(i&&a&&(p<=Math.PI/2||p>3*Math.PI/2))){var m=d.tl,v=d.tr,g=d.bl,y=d.br,b=d.tex,x=d.anchorPoint,_=Math.max(u+Math.log(d.minScale)/Math.LN2,f),w=Math.min(u+Math.log(d.maxScale)/Math.LN2,25);if(!(w<=_)){_===f&&(_=0);var M=Math.round(d.glyphAngle/(2*Math.PI)*256),A=k(c,x.x,x.y,m.x,m.y,b.x,b.y,_,w,f,M);k(c,x.x,x.y,v.x,v.y,b.x+b.w,b.y,_,w,f,M),k(c,x.x,x.y,g.x,g.y,b.x,b.y+b.h,_,w,f,M),k(c,x.x,x.y,y.x,y.y,b.x+b.w,b.y+b.h,_,w,f,M),l.emplaceBack(A,A+1,A+2),l.emplaceBack(A+1,A+2,A+3)}}}},_.prototype.updateIcons=function(t){this.recalculateStyleLayers();var e=this.layer.layout["icon-image"];if(e)for(var r=0;r<this.features.length;r++){var n=s(this.features[r].properties,e);n&&(t[n]=!0)}},_.prototype.updateFont=function(t){this.recalculateStyleLayers();var e=this.layer.layout["text-font"],r=t[e]=t[e]||{};this.textFeatures=u(this.features,this.layer.layout,r)},_.prototype.addToDebugBuffers=function(t){for(var e=this.prepareArrayGroup("collisionBox",0).layoutVertexArray,r=-t.angle,i=t.yStretch,a=this.symbolInstancesStartIndex;a<this.symbolInstancesEndIndex;a++){var o=this.symbolInstancesArray.get(a);o.textCollisionFeature={boxStartIndex:o.textBoxStartIndex,boxEndIndex:o.textBoxEndIndex},o.iconCollisionFeature={boxStartIndex:o.iconBoxStartIndex,boxEndIndex:o.iconBoxEndIndex};for(var s=0;s<2;s++){var l=o[0===s?"textCollisionFeature":"iconCollisionFeature"];if(l)for(var c=l.boxStartIndex;c<l.boxEndIndex;c++){var u=this.collisionBoxArray.get(c),f=u.anchorPoint,h=new n(u.x1,u.y1*i)._rotate(r),d=new n(u.x2,u.y1*i)._rotate(r),p=new n(u.x1,u.y2*i)._rotate(r),m=new n(u.x2,u.y2*i)._rotate(r),v=Math.max(0,Math.min(25,this.zoom+Math.log(u.maxScale)/Math.LN2)),g=Math.max(0,Math.min(25,this.zoom+Math.log(u.placementScale)/Math.LN2));this.addCollisionBoxVertex(e,f,h,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,d,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,m,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,p,v,g),this.addCollisionBoxVertex(e,f,h,v,g)}}}},_.prototype.addSymbolInstance=function(t,e,r,n,i,a,o,s,l,c,u,f,h,p,v,g,x,w,M){var k,A,T,E,S,L,C,P;if(r&&(C=a?y(t,r,f,e,i,p):[],S=new m(s,e,t,l,c,u,r,f,h,p,!1)),k=this.symbolQuadsArray.length,C&&C.length)for(var z=0;z<C.length;z++)this.addSymbolQuad(C[z]);A=this.symbolQuadsArray.length;var O=S?S.boxStartIndex:this.collisionBoxArray.length,D=S?S.boxEndIndex:this.collisionBoxArray.length;n&&(P=a?b(t,n,v,e,i,x,r,w,M):[],L=new m(s,e,t,l,c,u,n,v,g,x,!0)),T=this.symbolQuadsArray.length,P&&1===P.length&&this.addSymbolQuad(P[0]),E=this.symbolQuadsArray.length;var I=L?L.boxStartIndex:this.collisionBoxArray.length,R=L?L.boxEndIndex:this.collisionBoxArray.length;return E>_.MAX_QUADS&&d.warnOnce("Too many symbols being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),A>_.MAX_QUADS&&d.warnOnce("Too many glyphs being rendered in a tile. See https://github.com/mapbox/mapbox-gl-js/issues/2907"),this.symbolInstancesArray.emplaceBack(O,D,I,R,k,A,T,E,t.x,t.y,o)},_.prototype.addSymbolQuad=function(t){return this.symbolQuadsArray.emplaceBack(t.anchorPoint.x,t.anchorPoint.y,t.tl.x,t.tl.y,t.tr.x,t.tr.y,t.bl.x,t.bl.y,t.br.x,t.br.y,t.tex.h,t.tex.w,t.tex.x,t.tex.y,t.anchorAngle,t.glyphAngle,t.maxScale,t.minScale)}},{"../../symbol/anchor":363,"../../symbol/clip_line":365,"../../symbol/collision_feature":367,"../../symbol/get_anchors":369,"../../symbol/mergelines":372,"../../symbol/quads":373,"../../symbol/resolve_text":374,"../../symbol/shaping":375,"../../util/token":413,"../../util/util":414,"../bucket":301,"../load_geometry":309,"point-geometry":458}],306:[function(t,e,r){"use strict";function n(t,e,r){this.arrayBuffer=t.arrayBuffer,this.length=t.length,this.attributes=e.members,this.itemSize=e.bytesPerElement,this.type=r,this.arrayType=e}e.exports=n,n.prototype.bind=function(t){var e=t[this.type];this.buffer?t.bindBuffer(e,this.buffer):(this.buffer=t.createBuffer(),t.bindBuffer(e,this.buffer),t.bufferData(e,this.arrayBuffer,t.STATIC_DRAW),this.arrayBuffer=null)};var i={Int8:"BYTE",Uint8:"UNSIGNED_BYTE",Int16:"SHORT",Uint16:"UNSIGNED_SHORT"};n.prototype.setVertexAttribPointers=function(t,e){for(var r=0;r<this.attributes.length;r++){var n=this.attributes[r],a=e[n.name];void 0!==a&&t.vertexAttribPointer(a,n.components,t[i[n.type]],!1,this.arrayType.bytesPerElement,n.offset)}},n.prototype.destroy=function(t){this.buffer&&t.deleteBuffer(this.buffer)},n.BufferType={VERTEX:"ARRAY_BUFFER",ELEMENT:"ELEMENT_ARRAY_BUFFER"}},{}],307:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./buffer"),a=t("../render/vertex_array_object");function o(t,e){this.layoutVertexBuffer=new i(t.layoutVertexArray,e.layoutVertexArrayType,i.BufferType.VERTEX),t.elementArray&&(this.elementBuffer=new i(t.elementArray,e.elementArrayType,i.BufferType.ELEMENT));var r,o=this.vaos={};t.elementArray2&&(this.elementBuffer2=new i(t.elementArray2,e.elementArrayType2,i.BufferType.ELEMENT),r=this.secondVaos={}),this.paintVertexBuffers=n.mapObject(t.paintVertexArrays,function(n,s){return o[s]=new a,t.elementArray2&&(r[s]=new a),new i(n,e.paintVertexArrayTypes[s],i.BufferType.VERTEX)})}e.exports=o,o.prototype.destroy=function(t){for(var e in this.layoutVertexBuffer.destroy(t),this.elementBuffer&&this.elementBuffer.destroy(t),this.elementBuffer2&&this.elementBuffer2.destroy(t),this.paintVertexBuffers)this.paintVertexBuffers[e].destroy(t);for(var r in this.vaos)this.vaos[r].destroy(t);for(var n in this.secondVaos)this.secondVaos[n].destroy(t)}},{"../render/vertex_array_object":329,"../util/util":414,"./buffer":306}],308:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("./load_geometry"),a=t("./bucket").EXTENT,o=t("feature-filter"),s=t("../util/struct_array"),l=t("grid-index"),c=t("../util/dictionary_coder"),u=t("vector-tile"),f=t("pbf"),h=t("../util/vectortile_to_geojson"),d=t("../util/util").arraysIntersect,p=t("../util/intersection_tests"),m=p.multiPolygonIntersectsBufferedMultiPoint,v=p.multiPolygonIntersectsMultiPolygon,g=p.multiPolygonIntersectsBufferedMultiLine,y=new s({members:[{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"}]});function b(t,e,r){if(t.grid){var n=t,i=e;t=n.coord,e=n.overscaling,this.grid=new l(n.grid),this.featureIndexArray=new y(n.featureIndexArray),this.rawTileData=i,this.bucketLayerIDs=n.bucketLayerIDs}else this.grid=new l(a,16,0),this.featureIndexArray=new y;this.coord=t,this.overscaling=e,this.x=t.x,this.y=t.y,this.z=t.z-Math.log(e)/Math.LN2,this.setCollisionTile(r)}function x(t){return Math.sqrt(t[0]*t[0]+t[1]*t[1])}function _(t,e){return e-t}function w(t){return t["line-gap-width"]>0?t["line-gap-width"]+2*t["line-width"]:t["line-width"]}function M(t,e,r,i,a){if(!e[0]&&!e[1])return t;e=n.convert(e),"viewport"===r&&e._rotate(-i);for(var o=[],s=0;s<t.length;s++){for(var l=t[s],c=[],u=0;u<l.length;u++)c.push(l[u].sub(e._mult(a)));o.push(c)}return o}function k(t,e){for(var r=[],i=new n(0,0),a=0;a<t.length;a++){for(var o=t[a],s=[],l=0;l<o.length;l++){var c=o[l-1],u=o[l],f=o[l+1],h=0===l?i:u.sub(c)._unit()._perp(),d=l===o.length-1?i:f.sub(u)._unit()._perp(),p=h._add(d)._unit(),m=p.x*d.x+p.y*d.y;p._mult(1/m),s.push(p._mult(e)._add(u))}r.push(s)}return r}e.exports=b,b.prototype.insert=function(t,e,r,n){var a=this.featureIndexArray.length;this.featureIndexArray.emplaceBack(e,r,n);for(var o=i(t),s=0;s<o.length;s++){for(var l=o[s],c=[1/0,1/0,-1/0,-1/0],u=0;u<l.length;u++){var f=l[u];c[0]=Math.min(c[0],f.x),c[1]=Math.min(c[1],f.y),c[2]=Math.max(c[2],f.x),c[3]=Math.max(c[3],f.y)}this.grid.insert(a,c[0],c[1],c[2],c[3])}},b.prototype.setCollisionTile=function(t){this.collisionTile=t},b.prototype.serialize=function(){var t={coord:this.coord,overscaling:this.overscaling,grid:this.grid.toArrayBuffer(),featureIndexArray:this.featureIndexArray.serialize(),bucketLayerIDs:this.bucketLayerIDs};return{data:t,transferables:[t.grid,t.featureIndexArray.arrayBuffer]}},b.prototype.query=function(t,e){this.vtLayers||(this.vtLayers=new u.VectorTile(new f(new Uint8Array(this.rawTileData))).layers,this.sourceLayerCoder=new c(this.vtLayers?Object.keys(this.vtLayers).sort():["_geojsonTileLayer"]));var r={},i=t.params||{},s=a/t.tileSize/t.scale,l=o(i.filter),h=0;for(var d in e){var p=e[d],m=p.paint,v=0;"line"===p.type?v=w(m)/2+Math.abs(m["line-offset"])+x(m["line-translate"]):"fill"===p.type?v=x(m["fill-translate"]):"circle"===p.type&&(v=m["circle-radius"]+x(m["circle-translate"])),h=Math.max(h,v*s)}for(var g=t.queryGeometry.map(function(t){return t.map(function(t){return new n(t.x,t.y)})}),y=1/0,b=1/0,M=-1/0,k=-1/0,A=0;A<g.length;A++)for(var T=g[A],E=0;E<T.length;E++){var S=T[E];y=Math.min(y,S.x),b=Math.min(b,S.y),M=Math.max(M,S.x),k=Math.max(k,S.y)}var L=this.grid.query(y-h,b-h,M+h,k+h);L.sort(_),this.filterMatching(r,L,this.featureIndexArray,g,l,i.layers,e,t.bearing,s);var C=this.collisionTile.queryRenderedSymbols(y,b,M,k,t.scale);return C.sort(),this.filterMatching(r,C,this.collisionTile.collisionBoxArray,g,l,i.layers,e,t.bearing,s),r},b.prototype.filterMatching=function(t,e,r,n,a,o,s,l,c){for(var u,f=0;f<e.length;f++){var p=e[f];if(p!==u){u=p;var y=r.get(p),b=this.bucketLayerIDs[y.bucketIndex];if(!o||d(o,b)){var x=this.sourceLayerCoder.decode(y.sourceLayerIndex),_=this.vtLayers[x].feature(y.featureIndex);if(a(_))for(var A=null,T=0;T<b.length;T++){var E=b[T];if(!(o&&o.indexOf(E)<0)){var S=s[E];if(S){var L;if("symbol"!==S.type){A||(A=i(_));var C=S.paint;if("line"===S.type){L=M(n,C["line-translate"],C["line-translate-anchor"],l,c);var P=w(C)/2*c;if(C["line-offset"]&&(A=k(A,C["line-offset"]*c)),!g(L,A,P))continue}else if("fill"===S.type){if(L=M(n,C["fill-translate"],C["fill-translate-anchor"],l,c),!v(L,A))continue}else if("circle"===S.type){L=M(n,C["circle-translate"],C["circle-translate-anchor"],l,c);var z=C["circle-radius"]*c;if(!m(L,A,z))continue}}var O=new h(_,this.z,this.x,this.y);O.layer=S.serialize({includeRefProperties:!0});var D=t[E];void 0===D&&(D=t[E]=[]),D.push(O)}}}}}}}},{"../util/dictionary_coder":404,"../util/intersection_tests":409,"../util/struct_array":412,"../util/util":414,"../util/vectortile_to_geojson":415,"./bucket":301,"./load_geometry":309,"feature-filter":141,"grid-index":254,pbf:451,"point-geometry":458,"vector-tile":544}],309:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./bucket").EXTENT,a=t("assert");function o(t){return{min:-1*Math.pow(2,t-1),max:Math.pow(2,t-1)-1}}var s={15:o(15),16:o(16)};e.exports=function(t,e){var r=s[e||16];a(r);for(var o=i/t.extent,l=t.loadGeometry(),c=0;c<l.length;c++)for(var u=l[c],f=0;f<u.length;f++){var h=u[f];h.x=Math.round(h.x*o),h.y=Math.round(h.y*o),(h.x<r.min||h.x>r.max||h.y<r.min||h.y>r.max)&&n.warnOnce("Geometry exceeds allowed extent, reduce your vector tile buffer size")}return l}},{"../util/util":414,"./bucket":301,assert:51}],310:[function(t,e,r){"use strict";function n(t,e,r){this.column=t,this.row=e,this.zoom=r}e.exports=n,n.prototype={clone:function(){return new n(this.column,this.row,this.zoom)},zoomTo:function(t){return this.clone()._zoomTo(t)},sub:function(t){return this.clone()._sub(t)},_zoomTo:function(t){var e=Math.pow(2,t-this.zoom);return this.column*=e,this.row*=e,this.zoom=t,this},_sub:function(t){return t=t.zoomTo(this.zoom),this.column-=t.column,this.row-=t.row,this}}},{}],311:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util").wrap;function i(t,e){if(isNaN(t)||isNaN(e))throw new Error("Invalid LngLat object: ("+t+", "+e+")");if(this.lng=+t,this.lat=+e,this.lat>90||this.lat<-90)throw new Error("Invalid LngLat latitude value: must be between -90 and 90")}i.prototype.wrap=function(){return new i(n(this.lng,-180,180),this.lat)},i.prototype.toArray=function(){return[this.lng,this.lat]},i.prototype.toString=function(){return"LngLat("+this.lng+", "+this.lat+")"},i.convert=function(t){return t instanceof i?t:Array.isArray(t)?new i(t[0],t[1]):t}},{"../util/util":414}],312:[function(t,e,r){"use strict";e.exports=i;var n=t("./lng_lat");function i(t,e){t&&(e?this.extend(t).extend(e):4===t.length?this.extend([t[0],t[1]]).extend([t[2],t[3]]):this.extend(t[0]).extend(t[1]))}i.prototype={extend:function(t){var e,r,a=this._sw,o=this._ne;if(t instanceof n)e=t,r=t;else{if(!(t instanceof i))return t?this.extend(n.convert(t)||i.convert(t)):this;if(e=t._sw,r=t._ne,!e||!r)return this}return a||o?(a.lng=Math.min(e.lng,a.lng),a.lat=Math.min(e.lat,a.lat),o.lng=Math.max(r.lng,o.lng),o.lat=Math.max(r.lat,o.lat)):(this._sw=new n(e.lng,e.lat),this._ne=new n(r.lng,r.lat)),this},getCenter:function(){return new n((this._sw.lng+this._ne.lng)/2,(this._sw.lat+this._ne.lat)/2)},getSouthWest:function(){return this._sw},getNorthEast:function(){return this._ne},getNorthWest:function(){return new n(this.getWest(),this.getNorth())},getSouthEast:function(){return new n(this.getEast(),this.getSouth())},getWest:function(){return this._sw.lng},getSouth:function(){return this._sw.lat},getEast:function(){return this._ne.lng},getNorth:function(){return this._ne.lat},toArray:function(){return[this._sw.toArray(),this._ne.toArray()]},toString:function(){return"LngLatBounds("+this._sw.toString()+", "+this._ne.toString()+")"}},i.convert=function(t){return!t||t instanceof i?t:new i(t)}},{"./lng_lat":311}],313:[function(t,e,r){"use strict";var n=t("./lng_lat"),i=t("point-geometry"),a=t("./coordinate"),o=t("../util/util").wrap,s=t("../util/interpolate"),l=t("../source/tile_coord"),c=t("../data/bucket").EXTENT,u=t("gl-matrix"),f=u.vec4,h=u.mat4,d=u.mat2;function p(t,e){this.tileSize=512,this._minZoom=t||0,this._maxZoom=e||22,this.latRange=[-85.05113,85.05113],this.width=0,this.height=0,this._center=new n(0,0),this.zoom=0,this.angle=0,this._altitude=1.5,this._pitch=0,this._unmodified=!0}e.exports=p,p.prototype={get minZoom(){return this._minZoom},set minZoom(t){this._minZoom!==t&&(this._minZoom=t,this.zoom=Math.max(this.zoom,t))},get maxZoom(){return this._maxZoom},set maxZoom(t){this._maxZoom!==t&&(this._maxZoom=t,this.zoom=Math.min(this.zoom,t))},get worldSize(){return this.tileSize*this.scale},get centerPoint(){return this.size._div(2)},get size(){return new i(this.width,this.height)},get bearing(){return-this.angle/Math.PI*180},set bearing(t){var e=-o(t,-180,180)*Math.PI/180;this.angle!==e&&(this._unmodified=!1,this.angle=e,this._calcMatrices(),this.rotationMatrix=d.create(),d.rotate(this.rotationMatrix,this.rotationMatrix,this.angle))},get pitch(){return this._pitch/Math.PI*180},set pitch(t){var e=Math.min(60,t)/180*Math.PI;this._pitch!==e&&(this._unmodified=!1,this._pitch=e,this._calcMatrices())},get altitude(){return this._altitude},set altitude(t){var e=Math.max(.75,t);this._altitude!==e&&(this._unmodified=!1,this._altitude=e,this._calcMatrices())},get zoom(){return this._zoom},set zoom(t){var e=Math.min(Math.max(t,this.minZoom),this.maxZoom);this._zoom!==e&&(this._unmodified=!1,this._zoom=e,this.scale=this.zoomScale(e),this.tileZoom=Math.floor(e),this.zoomFraction=e-this.tileZoom,this._calcMatrices(),this._constrain())},get center(){return this._center},set center(t){t.lat===this._center.lat&&t.lng===this._center.lng||(this._unmodified=!1,this._center=t,this._calcMatrices(),this._constrain())},coveringZoomLevel:function(t){return(t.roundZoom?Math.round:Math.floor)(this.zoom+this.scaleZoom(this.tileSize/t.tileSize))},coveringTiles:function(t){var e=this.coveringZoomLevel(t),r=e;if(e<t.minzoom)return[];e>t.maxzoom&&(e=t.maxzoom);var n=this,a=n.locationCoordinate(n.center)._zoomTo(e),o=new i(a.column-.5,a.row-.5);return l.cover(e,[n.pointCoordinate(new i(0,0))._zoomTo(e),n.pointCoordinate(new i(n.width,0))._zoomTo(e),n.pointCoordinate(new i(n.width,n.height))._zoomTo(e),n.pointCoordinate(new i(0,n.height))._zoomTo(e)],t.reparseOverscaled?r:e).sort(function(t,e){return o.dist(t)-o.dist(e)})},resize:function(t,e){this.width=t,this.height=e,this.pixelsToGLUnits=[2/t,-2/e],this._calcMatrices(),this._constrain()},get unmodified(){return this._unmodified},zoomScale:function(t){return Math.pow(2,t)},scaleZoom:function(t){return Math.log(t)/Math.LN2},project:function(t,e){return new i(this.lngX(t.lng,e),this.latY(t.lat,e))},unproject:function(t,e){return new n(this.xLng(t.x,e),this.yLat(t.y,e))},get x(){return this.lngX(this.center.lng)},get y(){return this.latY(this.center.lat)},get point(){return new i(this.x,this.y)},lngX:function(t,e){return(180+t)*(e||this.worldSize)/360},latY:function(t,e){return(180-180/Math.PI*Math.log(Math.tan(Math.PI/4+t*Math.PI/360)))*(e||this.worldSize)/360},xLng:function(t,e){return 360*t/(e||this.worldSize)-180},yLat:function(t,e){var r=180-360*t/(e||this.worldSize);return 360/Math.PI*Math.atan(Math.exp(r*Math.PI/180))-90},panBy:function(t){var e=this.centerPoint._add(t);this.center=this.pointLocation(e)},setLocationAtPoint:function(t,e){var r=this.locationCoordinate(t),n=this.pointCoordinate(e),i=this.pointCoordinate(this.centerPoint),a=n._sub(r);this._unmodified=!1,this.center=this.coordinateLocation(i._sub(a))},locationPoint:function(t){return this.coordinatePoint(this.locationCoordinate(t))},pointLocation:function(t){return this.coordinateLocation(this.pointCoordinate(t))},locationCoordinate:function(t){var e=this.zoomScale(this.tileZoom)/this.worldSize,r=n.convert(t);return new a(this.lngX(r.lng)*e,this.latY(r.lat)*e,this.tileZoom)},coordinateLocation:function(t){var e=this.zoomScale(t.zoom);return new n(this.xLng(t.column,e),this.yLat(t.row,e))},pointCoordinate:function(t){var e=[t.x,t.y,0,1],r=[t.x,t.y,1,1];f.transformMat4(e,e,this.pixelMatrixInverse),f.transformMat4(r,r,this.pixelMatrixInverse);var n=e[3],i=r[3],o=e[0]/n,l=r[0]/i,c=e[1]/n,u=r[1]/i,h=e[2]/n,d=r[2]/i,p=h===d?0:(0-h)/(d-h),m=this.worldSize/this.zoomScale(this.tileZoom);return new a(s(o,l,p)/m,s(c,u,p)/m,this.tileZoom)},coordinatePoint:function(t){var e=this.worldSize/this.zoomScale(t.zoom),r=[t.column*e,t.row*e,0,1];return f.transformMat4(r,r,this.pixelMatrix),new i(r[0]/r[3],r[1]/r[3])},calculatePosMatrix:function(t,e){void 0===e&&(e=1/0),t instanceof l&&(t=t.toCoordinate(e));var r=Math.min(t.zoom,e),n=this.worldSize/Math.pow(2,r),i=new Float64Array(16);return h.identity(i),h.translate(i,i,[t.column*n,t.row*n,0]),h.scale(i,i,[n/c,n/c,1]),h.multiply(i,this.projMatrix,i),new Float32Array(i)},_constrain:function(){if(this.center&&this.width&&this.height&&!this._constraining){this._constraining=!0;var t,e,r,n,a,o,s,l,c=this.size,u=this._unmodified;this.latRange&&(t=this.latY(this.latRange[1]),a=(e=this.latY(this.latRange[0]))-t<c.y?c.y/(e-t):0),this.lngRange&&(r=this.lngX(this.lngRange[0]),o=(n=this.lngX(this.lngRange[1]))-r<c.x?c.x/(n-r):0);var f=Math.max(o||0,a||0);if(f)return this.center=this.unproject(new i(o?(n+r)/2:this.x,a?(e+t)/2:this.y)),this.zoom+=this.scaleZoom(f),this._unmodified=u,void(this._constraining=!1);if(this.latRange){var h=this.y,d=c.y/2;h-d<t&&(l=t+d),h+d>e&&(l=e-d)}if(this.lngRange){var p=this.x,m=c.x/2;p-m<r&&(s=r+m),p+m>n&&(s=n-m)}void 0===s&&void 0===l||(this.center=this.unproject(new i(void 0!==s?s:this.x,void 0!==l?l:this.y))),this._unmodified=u,this._constraining=!1}},_calcMatrices:function(){if(this.height){var t=Math.atan(.5/this.altitude),e=Math.sin(t)*this.altitude/Math.sin(Math.PI/2-this._pitch-t),r=Math.cos(Math.PI/2-this._pitch)*e+this.altitude,n=new Float64Array(16);if(h.perspective(n,2*Math.atan(this.height/2/this.altitude),this.width/this.height,.1,r),h.translate(n,n,[0,0,-this.altitude]),h.scale(n,n,[1,-1,1/this.height]),h.rotateX(n,n,this._pitch),h.rotateZ(n,n,this.angle),h.translate(n,n,[-this.x,-this.y,0]),this.projMatrix=n,n=h.create(),h.scale(n,n,[this.width/2,-this.height/2,1]),h.translate(n,n,[1,-1,0]),this.pixelMatrix=h.multiply(new Float64Array(16),n,this.projMatrix),!(n=h.invert(new Float64Array(16),this.pixelMatrix)))throw new Error("failed to invert matrix");this.pixelMatrixInverse=n}}}},{"../data/bucket":301,"../source/tile_coord":341,"../util/interpolate":408,"../util/util":414,"./coordinate":310,"./lng_lat":311,"gl-matrix":198,"point-geometry":458}],314:[function(t,e,r){"use strict";var n={" 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a,o,s,l,c,u,f,h,d=[];for(a=0,o=t.length;a<o;a++)if(c=n[t[a]]){for(h=null,s=0,l=c[1].length;s<l;s+=2)-1===c[1][s]&&-1===c[1][s+1]?h=null:(u=e+c[1][s]*i,f=r-c[1][s+1]*i,h&&d.push(h.x,h.y,u,f),h={x:u,y:f});e+=c[0]*i}return d}},{}],315:[function(t,e,r){"use strict";var n=e.exports={};n.version=t("../package.json").version,n.Map=t("./ui/map"),n.Control=t("./ui/control/control"),n.Navigation=t("./ui/control/navigation"),n.Geolocate=t("./ui/control/geolocate"),n.Attribution=t("./ui/control/attribution"),n.Popup=t("./ui/popup"),n.Marker=t("./ui/marker"),n.Style=t("./style/style"),n.LngLat=t("./geo/lng_lat"),n.LngLatBounds=t("./geo/lng_lat_bounds"),n.Point=t("point-geometry"),n.Evented=t("./util/evented"),n.util=t("./util/util"),n.supported=t("./util/browser").supported;var i=t("./util/ajax");n.util.getJSON=i.getJSON,n.util.getArrayBuffer=i.getArrayBuffer;var a=t("./util/config");n.config=a,Object.defineProperty(n,"accessToken",{get:function(){return a.ACCESS_TOKEN},set:function(t){a.ACCESS_TOKEN=t}})},{"../package.json":416,"./geo/lng_lat":311,"./geo/lng_lat_bounds":312,"./style/style":350,"./ui/control/attribution":381,"./ui/control/control":382,"./ui/control/geolocate":383,"./ui/control/navigation":384,"./ui/map":393,"./ui/marker":394,"./ui/popup":395,"./util/ajax":397,"./util/browser":398,"./util/config":403,"./util/evented":406,"./util/util":414,"point-geometry":458}],316:[function(t,e,r){"use strict";var n=t("assert");e.exports=function(t){for(var e={define:{},initialize:{}},r=0;r<t.length;r++){var i=t[r];n("u_"===i.name.slice(0,2));var a="{precision} "+(1===i.components?"float":"vec"+i.components);e.define[i.name.slice(2)]="uniform "+a+" "+i.name+";\n",e.initialize[i.name.slice(2)]=a+" "+i.name.slice(2)+" = "+i.name+";\n"}return e}},{assert:51}],317:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units"),i=t("./create_uniform_pragmas"),a=512;e.exports=function(t,e,r){var o,s=t.gl,l=t.transform,c=r.paint["background-color"],u=r.paint["background-pattern"],f=r.paint["background-opacity"],h=u?t.spriteAtlas.getPosition(u.from,!0):null,d=u?t.spriteAtlas.getPosition(u.to,!0):null;if(t.setDepthSublayer(0),h&&d){if(t.isOpaquePass)return;o=t.useProgram("pattern"),s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,h.tl),s.uniform2fv(o.u_pattern_br_a,h.br),s.uniform2fv(o.u_pattern_tl_b,d.tl),s.uniform2fv(o.u_pattern_br_b,d.br),s.uniform1f(o.u_opacity,f),s.uniform1f(o.u_mix,u.t),s.uniform2fv(o.u_pattern_size_a,h.size),s.uniform2fv(o.u_pattern_size_b,d.size),s.uniform1f(o.u_scale_a,u.fromScale),s.uniform1f(o.u_scale_b,u.toScale),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),t.tileExtentPatternVAO.bind(s,o,t.tileExtentBuffer)}else{if(t.isOpaquePass!==(1===c[3]))return;var p=i([{name:"u_color",components:4},{name:"u_opacity",components:1}]);o=t.useProgram("fill",[],p,p),s.uniform4fv(o.u_color,c),s.uniform1f(o.u_opacity,f),t.tileExtentVAO.bind(s,o,t.tileExtentBuffer)}s.disable(s.STENCIL_TEST);for(var m=l.coveringTiles({tileSize:a}),v=0;v<m.length;v++){var g=m[v];if(h&&d){var y={coord:g,tileSize:a};s.uniform1f(o.u_tile_units_to_pixels,1/n(y,1,t.transform.tileZoom));var b=y.tileSize*Math.pow(2,t.transform.tileZoom-y.coord.z),x=b*(y.coord.x+g.w*Math.pow(2,y.coord.z)),_=b*y.coord.y;s.uniform2f(o.u_pixel_coord_upper,x>>16,_>>16),s.uniform2f(o.u_pixel_coord_lower,65535&x,65535&_)}s.uniformMatrix4fv(o.u_matrix,!1,t.transform.calculatePosMatrix(g)),s.drawArrays(s.TRIANGLE_STRIP,0,t.tileExtentBuffer.length)}s.stencilMask(0),s.stencilFunc(s.EQUAL,128,128)}},{"../source/pixels_to_tile_units":335,"./create_uniform_pragmas":316}],318:[function(t,e,r){"use strict";var n=t("../util/browser");e.exports=function(t,e,r,i){if(t.isOpaquePass)return;var a=t.gl;t.setDepthSublayer(0),t.depthMask(!1),a.disable(a.STENCIL_TEST);for(var o=0;o<i.length;o++){var s=i[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.circle;if(u){var f=c.paintAttributes.circle[r.id],h=t.useProgram("circle",f.defines,f.vertexPragmas,f.fragmentPragmas);"map"===r.paint["circle-pitch-scale"]?(a.uniform1i(h.u_scale_with_map,!0),a.uniform2f(h.u_extrude_scale,t.transform.pixelsToGLUnits[0]*t.transform.altitude,t.transform.pixelsToGLUnits[1]*t.transform.altitude)):(a.uniform1i(h.u_scale_with_map,!1),a.uniform2fv(h.u_extrude_scale,t.transform.pixelsToGLUnits)),a.uniform1f(h.u_devicepixelratio,n.devicePixelRatio),a.uniformMatrix4fv(h.u_matrix,!1,t.translatePosMatrix(s.posMatrix,l,r.paint["circle-translate"],r.paint["circle-translate-anchor"])),c.setUniforms(a,"circle",h,r,{zoom:t.transform.zoom});for(var d=0;d<u.length;d++){var p=u[d];p.vaos[r.id].bind(a,h,p.layoutVertexBuffer,p.elementBuffer,p.paintVertexBuffers[r.id]),a.drawElements(a.TRIANGLES,3*p.elementBuffer.length,a.UNSIGNED_SHORT,0)}}}}}},{"../util/browser":398}],319:[function(t,e,r){"use strict";e.exports=function(t,e,r,n){var i=t.gl;i.enable(i.STENCIL_TEST);for(var a=t.useProgram("collisionbox"),o=0;o<n.length;o++){var s=n[o],l=e.getTile(s),c=l.getBucket(r);if(c){var u=c.bufferGroups.collisionBox;if(u&&u.length){var f=u[0];0!==f.layoutVertexBuffer.length&&(i.uniformMatrix4fv(a.u_matrix,!1,s.posMatrix),t.enableTileClippingMask(s),t.lineWidth(1),i.uniform1f(a.u_scale,Math.pow(2,t.transform.zoom-l.coord.z)),i.uniform1f(a.u_zoom,10*t.transform.zoom),i.uniform1f(a.u_maxzoom,10*(l.coord.z+1)),f.vaos[r.id].bind(i,a,f.layoutVertexBuffer),i.drawArrays(i.LINES,0,f.layoutVertexBuffer.length))}}}}},{}],320:[function(t,e,r){"use strict";var n=t("../lib/debugtext"),i=t("../util/browser"),a=t("gl-matrix").mat4,o=t("../data/bucket").EXTENT,s=t("../data/buffer"),l=t("./vertex_array_object");function c(t,e,r){var c=t.gl;c.disable(c.STENCIL_TEST),t.lineWidth(1*i.devicePixelRatio);var u=r.posMatrix,f=t.useProgram("debug");c.uniformMatrix4fv(f.u_matrix,!1,u),c.uniform4f(f.u_color,1,0,0,1),t.debugVAO.bind(c,f,t.debugBuffer),c.drawArrays(c.LINE_STRIP,0,t.debugBuffer.length);for(var h=n(r.toString(),50,200,5),d=new t.PosArray,p=0;p<h.length;p+=2)d.emplaceBack(h[p],h[p+1]);var m=new s(d.serialize(),t.PosArray.serialize(),s.BufferType.VERTEX);(new l).bind(c,f,m),c.uniform4f(f.u_color,1,1,1,1);for(var v=e.getTile(r).tileSize,g=o/(Math.pow(2,t.transform.zoom-r.z)*v),y=[[-1,-1],[-1,1],[1,-1],[1,1]],b=0;b<y.length;b++){var x=y[b];c.uniformMatrix4fv(f.u_matrix,!1,a.translate([],u,[g*x[0],g*x[1],0])),c.drawArrays(c.LINES,0,m.length)}c.uniform4f(f.u_color,0,0,0,1),c.uniformMatrix4fv(f.u_matrix,!1,u),c.drawArrays(c.LINES,0,m.length)}e.exports=function(t,e,r){if(t.isOpaquePass)return;if(!t.options.debug)return;for(var n=0;n<r.length;n++)c(t,e,r[n])}},{"../data/bucket":301,"../data/buffer":306,"../lib/debugtext":314,"../util/browser":398,"./vertex_array_object":329,"gl-matrix":198}],321:[function(t,e,r){"use strict";var n=t("../source/pixels_to_tile_units");function i(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s=a.bufferGroups.fill;if(s){var l,c=t.gl,u=r.paint["fill-pattern"];if(u)l=t.useProgram("pattern"),o(u,r.paint["fill-opacity"],i,n,t,l),c.activeTexture(c.TEXTURE0),t.spriteAtlas.bind(c,!0);else{var f=a.paintAttributes.fill[r.id];l=t.useProgram("fill",f.defines,f.vertexPragmas,f.fragmentPragmas),a.setUniforms(c,"fill",l,r,{zoom:t.transform.zoom})}c.uniformMatrix4fv(l.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),t.enableTileClippingMask(n);for(var h=0;h<s.length;h++){var d=s[h];d.vaos[r.id].bind(c,l,d.layoutVertexBuffer,d.elementBuffer,d.paintVertexBuffers[r.id]),c.drawElements(c.TRIANGLES,d.elementBuffer.length,c.UNSIGNED_SHORT,0)}}}}function a(t,e,r,n){var i=e.getTile(n),a=i.getBucket(r);if(a){var s,l=t.gl,c=a.bufferGroups.fill,u=r.paint["fill-pattern"],f=r.paint["fill-opacity"],h=r.getPaintProperty("fill-outline-color");if(u&&!h)s=t.useProgram("outlinepattern"),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight);else{var d=a.paintAttributes.fill[r.id];s=t.useProgram("outline",d.defines,d.vertexPragmas,d.fragmentPragmas),l.uniform2f(s.u_world,l.drawingBufferWidth,l.drawingBufferHeight),l.uniform1f(s.u_opacity,f),a.setUniforms(l,"fill",s,r,{zoom:t.transform.zoom})}l.uniformMatrix4fv(s.u_matrix,!1,t.translatePosMatrix(n.posMatrix,i,r.paint["fill-translate"],r.paint["fill-translate-anchor"])),u&&o(u,f,i,n,t,s),t.enableTileClippingMask(n);for(var p=0;p<c.length;p++){var m=c[p];m.secondVaos[r.id].bind(l,s,m.layoutVertexBuffer,m.elementBuffer2,m.paintVertexBuffers[r.id]),l.drawElements(l.LINES,2*m.elementBuffer2.length,l.UNSIGNED_SHORT,0)}}}function o(t,e,r,i,a,o){var s=a.gl,l=a.spriteAtlas.getPosition(t.from,!0),c=a.spriteAtlas.getPosition(t.to,!0);if(l&&c){s.uniform1i(o.u_image,0),s.uniform2fv(o.u_pattern_tl_a,l.tl),s.uniform2fv(o.u_pattern_br_a,l.br),s.uniform2fv(o.u_pattern_tl_b,c.tl),s.uniform2fv(o.u_pattern_br_b,c.br),s.uniform1f(o.u_opacity,e),s.uniform1f(o.u_mix,t.t),s.uniform1f(o.u_tile_units_to_pixels,1/n(r,1,a.transform.tileZoom)),s.uniform2fv(o.u_pattern_size_a,l.size),s.uniform2fv(o.u_pattern_size_b,c.size),s.uniform1f(o.u_scale_a,t.fromScale),s.uniform1f(o.u_scale_b,t.toScale);var u=r.tileSize*Math.pow(2,a.transform.tileZoom-r.coord.z),f=u*(r.coord.x+i.w*Math.pow(2,r.coord.z)),h=u*r.coord.y;s.uniform2f(o.u_pixel_coord_upper,f>>16,h>>16),s.uniform2f(o.u_pixel_coord_lower,65535&f,65535&h),s.activeTexture(s.TEXTURE0),a.spriteAtlas.bind(s,!0)}}e.exports=function(t,e,r,n){var o,s=t.gl;s.enable(s.STENCIL_TEST),o=!r.paint["fill-pattern"]&&(r.isPaintValueFeatureConstant("fill-color")&&r.isPaintValueFeatureConstant("fill-opacity")&&1===r.paint["fill-color"][3]&&1===r.paint["fill-opacity"]);if(t.isOpaquePass===o){t.setDepthSublayer(1);for(var l=0;l<n.length;l++)i(t,e,r,n[l])}if(!t.isOpaquePass&&r.paint["fill-antialias"]){t.lineWidth(2),t.depthMask(!1);var c=r.getPaintProperty("fill-outline-color");(c||!r.paint["fill-pattern"])&&c?t.setDepthSublayer(2):t.setDepthSublayer(0);for(var u=0;u<n.length;u++)a(t,e,r,n[u])}}},{"../source/pixels_to_tile_units":335}],322:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat2,a=t("../source/pixels_to_tile_units");e.exports=function(t,e,r,o){if(!t.isOpaquePass){t.setDepthSublayer(0),t.depthMask(!1);var s=t.gl;if(s.enable(s.STENCIL_TEST),!(r.paint["line-width"]<=0)){var l=1/n.devicePixelRatio,c=r.paint["line-blur"]+l,u=r.paint["line-color"],f=t.transform,h=i.create();i.scale(h,h,[1,Math.cos(f._pitch)]),i.rotate(h,h,t.transform.angle);var d,p,m,v,g,y=Math.sqrt(f.height*f.height/4*(1+f.altitude*f.altitude)),b=(y+f.height/2*Math.tan(f._pitch))/y-1,x=r.paint["line-dasharray"],_=r.paint["line-pattern"];if(x)d=t.useProgram("linesdfpattern"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),p=t.lineAtlas.getDash(x.from,"round"===r.layout["line-cap"]),m=t.lineAtlas.getDash(x.to,"round"===r.layout["line-cap"]),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.lineAtlas.bind(s),s.uniform1f(d.u_tex_y_a,p.y),s.uniform1f(d.u_tex_y_b,m.y),s.uniform1f(d.u_mix,x.t),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h);else if(_){if(v=t.spriteAtlas.getPosition(_.from,!0),g=t.spriteAtlas.getPosition(_.to,!0),!v||!g)return;d=t.useProgram("linepattern"),s.uniform1i(d.u_image,0),s.activeTexture(s.TEXTURE0),t.spriteAtlas.bind(s,!0),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform2fv(d.u_pattern_tl_a,v.tl),s.uniform2fv(d.u_pattern_br_a,v.br),s.uniform2fv(d.u_pattern_tl_b,g.tl),s.uniform2fv(d.u_pattern_br_b,g.br),s.uniform1f(d.u_fade,_.t),s.uniform1f(d.u_opacity,r.paint["line-opacity"]),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h)}else d=t.useProgram("line"),s.uniform1f(d.u_linewidth,r.paint["line-width"]/2),s.uniform1f(d.u_gapwidth,r.paint["line-gap-width"]/2),s.uniform1f(d.u_antialiasing,l/2),s.uniform1f(d.u_blur,c),s.uniform1f(d.u_extra,b),s.uniform1f(d.u_offset,-r.paint["line-offset"]),s.uniformMatrix2fv(d.u_antialiasingmatrix,!1,h),s.uniform4fv(d.u_color,u),s.uniform1f(d.u_opacity,r.paint["line-opacity"]);for(var w=0;w<o.length;w++){var M=o[w],k=e.getTile(M),A=k.getBucket(r);if(A){var T=A.bufferGroups.line;if(T){t.enableTileClippingMask(M);var E=t.translatePosMatrix(M.posMatrix,k,r.paint["line-translate"],r.paint["line-translate-anchor"]);s.uniformMatrix4fv(d.u_matrix,!1,E);var S=1/a(k,1,t.transform.zoom);if(x){var L=p.width*x.fromScale,C=m.width*x.toScale,P=[1/a(k,L,t.transform.tileZoom),-p.height/2],z=[1/a(k,C,t.transform.tileZoom),-m.height/2],O=t.lineAtlas.width/(256*Math.min(L,C)*n.devicePixelRatio)/2;s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_patternscale_a,P),s.uniform2fv(d.u_patternscale_b,z),s.uniform1f(d.u_sdfgamma,O)}else _?(s.uniform1f(d.u_ratio,S),s.uniform2fv(d.u_pattern_size_a,[a(k,v.size[0]*_.fromScale,t.transform.tileZoom),g.size[1]]),s.uniform2fv(d.u_pattern_size_b,[a(k,g.size[0]*_.toScale,t.transform.tileZoom),g.size[1]])):s.uniform1f(d.u_ratio,S);for(var D=0;D<T.length;D++){var I=T[D];I.vaos[r.id].bind(s,d,I.layoutVertexBuffer,I.elementBuffer),s.drawElements(s.TRIANGLES,3*I.elementBuffer.length,s.UNSIGNED_SHORT,0)}}}}}}}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"gl-matrix":198}],323:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/struct_array");function a(t,e,r,n){if(!t.isOpaquePass){var i=t.gl;i.enable(i.DEPTH_TEST),t.depthMask(!0),i.depthFunc(i.LESS);for(var a=n.length&&n[0].z,s=0;s<n.length;s++){var l=n[s];t.setDepthSublayer(l.z-a),o(t,e,r,l)}i.depthFunc(i.LEQUAL)}}function o(t,e,r,i){var a=t.gl;a.disable(a.STENCIL_TEST);var o,s,l=e.getTile(i),c=t.transform.calculatePosMatrix(i,e.maxzoom),u=t.useProgram("raster");a.uniformMatrix4fv(u.u_matrix,!1,c),a.uniform1f(u.u_brightness_low,r.paint["raster-brightness-min"]),a.uniform1f(u.u_brightness_high,r.paint["raster-brightness-max"]),a.uniform1f(u.u_saturation_factor,(o=r.paint["raster-saturation"])>0?1-1/(1.001-o):-o),a.uniform1f(u.u_contrast_factor,(s=r.paint["raster-contrast"])>0?1/(1-s):1+s),a.uniform3fv(u.u_spin_weights,function(t){t*=Math.PI/180;var e=Math.sin(t),r=Math.cos(t);return[(2*r+1)/3,(-Math.sqrt(3)*e-r+1)/3,(Math.sqrt(3)*e-r+1)/3]}(r.paint["raster-hue-rotate"]));var f,h,d=l.source&&l.source.findLoadedParent(i,0,{}),p=function(t,e,r,i){var a=[1,0],o=r.paint["raster-fade-duration"];if(t.source&&o>0){var s=(new Date).getTime(),l=(s-t.timeAdded)/o,c=e?(s-e.timeAdded)/o:-1,u=i.coveringZoomLevel(t.source),f=!!e&&Math.abs(e.coord.z-u)>Math.abs(t.coord.z-u);!e||f?(a[0]=n.clamp(l,0,1),a[1]=1-a[0]):(a[0]=n.clamp(1-c,0,1),a[1]=1-a[0])}var h=r.paint["raster-opacity"];return a[0]*=h,a[1]*=h,a}(l,d,r,t.transform);a.activeTexture(a.TEXTURE0),a.bindTexture(a.TEXTURE_2D,l.texture),a.activeTexture(a.TEXTURE1),d?(a.bindTexture(a.TEXTURE_2D,d.texture),f=Math.pow(2,d.coord.z-l.coord.z),h=[l.coord.x*f%1,l.coord.y*f%1]):(a.bindTexture(a.TEXTURE_2D,l.texture),p[1]=0),a.uniform2fv(u.u_tl_parent,h||[0,0]),a.uniform1f(u.u_scale_parent,f||1),a.uniform1f(u.u_buffer_scale,1),a.uniform1f(u.u_opacity0,p[0]),a.uniform1f(u.u_opacity1,p[1]),a.uniform1i(u.u_image0,0),a.uniform1i(u.u_image1,1);var m=l.boundsBuffer||t.rasterBoundsBuffer;(l.boundsVAO||t.rasterBoundsVAO).bind(a,u,m),a.drawArrays(a.TRIANGLE_STRIP,0,m.length)}e.exports=a,a.RasterBoundsArray=new i({members:[{name:"a_pos",type:"Int16",components:2},{name:"a_texture_pos",type:"Int16",components:2}]})},{"../util/struct_array":412,"../util/util":414}],324:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("./draw_collision_debug"),a=t("../source/pixels_to_tile_units");function o(t,e,r,n,i,a,o,l,c,u,f,h,d,p,m){for(var v=0;v<n.length;v++){var g=e.getTile(n[v]),y=g.getBucket(r);if(y){var b=y.bufferGroups,x=i?b.glyph:b.icon;x.length&&(t.enableTileClippingMask(n[v]),s(t,r,n[v].posMatrix,g,y,x,i,i||y.sdfIcons,!i&&y.iconsNeedLinear,i?y.adjustedTextSize:y.adjustedIconSize,y.fontstack,a,o,l,c,u,f,h,d,p,m))}}}function s(t,e,r,i,o,s,l,c,u,f,h,d,p,m,v,g,y,b,x,_,w){var M,k,A,T=t.gl,E=t.transform,S="map"===m,L="map"===v,C=l?24:1,P=g/C;if(L?(k=a(i,1,t.transform.zoom)*P,A=1/Math.cos(E._pitch),M=[k,k]):(k=t.transform.altitude*P,A=1,M=[E.pixelsToGLUnits[0]*k,E.pixelsToGLUnits[1]*k]),l||t.style.sprite.loaded()){var z=t.useProgram(c?"sdf":"icon");if(T.uniformMatrix4fv(z.u_matrix,!1,t.translatePosMatrix(r,i,d,p)),T.uniform1i(z.u_rotate_with_map,S),T.uniform1i(z.u_pitch_with_map,L),T.uniform2fv(z.u_extrude_scale,M),T.activeTexture(T.TEXTURE0),T.uniform1i(z.u_texture,0),l){var O=h&&t.glyphSource.getGlyphAtlas(h);if(!O)return;O.updateTexture(T),T.uniform2f(z.u_texsize,O.width/4,O.height/4)}else{var D=t.options.rotating||t.options.zooming,I=1!==P||n.devicePixelRatio!==t.spriteAtlas.pixelRatio||u,R=L||t.transform.pitch;t.spriteAtlas.bind(T,c||D||I||R),T.uniform2f(z.u_texsize,t.spriteAtlas.width/4,t.spriteAtlas.height/4)}var N,F=Math.log(g/f)/Math.LN2||0;if(T.uniform1f(z.u_zoom,10*(t.transform.zoom-F)),T.activeTexture(T.TEXTURE1),t.frameHistory.bind(T),T.uniform1i(z.u_fadetexture,1),c){var j=.105*C/g/n.devicePixelRatio;if(y){T.uniform1f(z.u_gamma,(1.19*x/P/8+j)*A),T.uniform4fv(z.u_color,b),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,(6-y/P)/8);for(var B=0;B<s.length;B++)(N=s[B]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}T.uniform1f(z.u_gamma,j*A),T.uniform4fv(z.u_color,w),T.uniform1f(z.u_opacity,_),T.uniform1f(z.u_buffer,.75),T.uniform1f(z.u_pitch,E.pitch/360*2*Math.PI),T.uniform1f(z.u_bearing,E.bearing/360*2*Math.PI),T.uniform1f(z.u_aspect_ratio,E.width/E.height);for(var U=0;U<s.length;U++)(N=s[U]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}else{T.uniform1f(z.u_opacity,_);for(var V=0;V<s.length;V++)(N=s[V]).vaos[e.id].bind(T,z,N.layoutVertexBuffer,N.elementBuffer),T.drawElements(T.TRIANGLES,3*N.elementBuffer.length,T.UNSIGNED_SHORT,0)}}}e.exports=function(t,e,r,n){if(t.isOpaquePass)return;var a=!(r.layout["text-allow-overlap"]||r.layout["icon-allow-overlap"]||r.layout["text-ignore-placement"]||r.layout["icon-ignore-placement"]),s=t.gl;a?s.disable(s.STENCIL_TEST):s.enable(s.STENCIL_TEST);t.setDepthSublayer(0),t.depthMask(!1),s.disable(s.DEPTH_TEST),o(t,e,r,n,!1,r.paint["icon-translate"],r.paint["icon-translate-anchor"],r.layout["icon-rotation-alignment"],r.layout["icon-rotation-alignment"],r.layout["icon-size"],r.paint["icon-halo-width"],r.paint["icon-halo-color"],r.paint["icon-halo-blur"],r.paint["icon-opacity"],r.paint["icon-color"]),o(t,e,r,n,!0,r.paint["text-translate"],r.paint["text-translate-anchor"],r.layout["text-rotation-alignment"],r.layout["text-pitch-alignment"],r.layout["text-size"],r.paint["text-halo-width"],r.paint["text-halo-color"],r.paint["text-halo-blur"],r.paint["text-opacity"],r.paint["text-color"]),s.enable(s.DEPTH_TEST),e.map.showCollisionBoxes&&i(t,e,r,n)}},{"../source/pixels_to_tile_units":335,"../util/browser":398,"./draw_collision_debug":319}],325:[function(t,e,r){"use strict";function n(){this.changeTimes=new Float64Array(256),this.changeOpacities=new Uint8Array(256),this.opacities=new Uint8ClampedArray(256),this.array=new Uint8Array(this.opacities.buffer),this.fadeDuration=300,this.previousZoom=0,this.firstFrame=!0}e.exports=n,n.prototype.record=function(t){var e,r=Date.now();if(this.firstFrame&&(r=0,this.firstFrame=!1),(t=Math.floor(10*t))<this.previousZoom)for(e=t+1;e<=this.previousZoom;e++)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];else for(e=t;e>this.previousZoom;e--)this.changeTimes[e]=r,this.changeOpacities[e]=this.opacities[e];for(e=0;e<256;e++){var n=(r-this.changeTimes[e])/this.fadeDuration*255;this.opacities[e]=e<=t?this.changeOpacities[e]+n:this.changeOpacities[e]-n}this.changed=!0,this.previousZoom=t},n.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.changed&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,256,1,t.ALPHA,t.UNSIGNED_BYTE,this.array),this.changed=!1)):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.NEAREST),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.NEAREST),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,256,1,0,t.ALPHA,t.UNSIGNED_BYTE,this.array))}},{}],326:[function(t,e,r){"use strict";var n=t("../util/util");function i(t,e){this.width=t,this.height=e,this.nextRow=0,this.bytes=4,this.data=new Uint8Array(this.width*this.height*this.bytes),this.positions={}}e.exports=i,i.prototype.setSprite=function(t){this.sprite=t},i.prototype.getDash=function(t,e){var r=t.join(",")+e;return this.positions[r]||(this.positions[r]=this.addDash(t,e)),this.positions[r]},i.prototype.addDash=function(t,e){var r=e?7:0,i=2*r+1;if(this.nextRow+i>this.height)return n.warnOnce("LineAtlas out of space"),null;for(var a=0,o=0;o<t.length;o++)a+=t[o];for(var s=this.width/a,l=s/2,c=t.length%2==1,u=-r;u<=r;u++)for(var f=this.nextRow+r+u,h=this.width*f,d=c?-t[t.length-1]:0,p=t[0],m=1,v=0;v<this.width;v++){for(;p<v/s;)d=p,p+=t[m],c&&m===t.length-1&&(p+=t[0]),m++;var g,y=Math.abs(v-d*s),b=Math.abs(v-p*s),x=Math.min(y,b),_=m%2==1;if(e){var w=r?u/r*(l+1):0;if(_){var M=l-Math.abs(w);g=Math.sqrt(x*x+M*M)}else g=l-Math.sqrt(x*x+w*w)}else g=(_?1:-1)*x;this.data[3+4*(h+v)]=Math.max(0,Math.min(255,g+128))}var k={y:(this.nextRow+r+.5)/this.height,height:2*r/this.height,width:a};return this.nextRow+=i,this.dirty=!0,k},i.prototype.bind=function(t){this.texture?(t.bindTexture(t.TEXTURE_2D,this.texture),this.dirty&&(this.dirty=!1,t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.RGBA,t.UNSIGNED_BYTE,this.data))):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.REPEAT),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width,this.height,0,t.RGBA,t.UNSIGNED_BYTE,this.data))}},{"../util/util":414}],327:[function(t,e,r){"use strict";var n=t("../util/browser"),i=t("gl-matrix").mat4,a=t("./frame_history"),o=t("../source/source_cache"),s=t("../data/bucket").EXTENT,l=t("../source/pixels_to_tile_units"),c=t("../util/util"),u=t("../util/struct_array"),f=t("../data/buffer"),h=t("./vertex_array_object"),d=t("./draw_raster").RasterBoundsArray,p=t("./create_uniform_pragmas");function m(t,e){this.gl=t,this.transform=e,this.reusableTextures={},this.preFbos={},this.frameHistory=new a,this.setup(),this.numSublayers=o.maxUnderzooming+o.maxOverzooming+1,this.depthEpsilon=1/Math.pow(2,16),this.lineWidthRange=t.getParameter(t.ALIASED_LINE_WIDTH_RANGE)}e.exports=m,c.extend(m.prototype,t("./painter/use_program")),m.prototype.resize=function(t,e){var r=this.gl;this.width=t*n.devicePixelRatio,this.height=e*n.devicePixelRatio,r.viewport(0,0,this.width,this.height)},m.prototype.setup=function(){var t=this.gl;t.verbose=!0,t.enable(t.BLEND),t.blendFunc(t.ONE,t.ONE_MINUS_SRC_ALPHA),t.enable(t.STENCIL_TEST),t.enable(t.DEPTH_TEST),t.depthFunc(t.LEQUAL),this._depthMask=!1,t.depthMask(!1);var e=this.PosArray=new u({members:[{name:"a_pos",type:"Int16",components:2}]}),r=new e;r.emplaceBack(0,0),r.emplaceBack(s,0),r.emplaceBack(0,s),r.emplaceBack(s,s),this.tileExtentBuffer=new f(r.serialize(),e.serialize(),f.BufferType.VERTEX),this.tileExtentVAO=new h,this.tileExtentPatternVAO=new h;var n=new e;n.emplaceBack(0,0),n.emplaceBack(s,0),n.emplaceBack(s,s),n.emplaceBack(0,s),n.emplaceBack(0,0),this.debugBuffer=new f(n.serialize(),e.serialize(),f.BufferType.VERTEX),this.debugVAO=new h;var i=new d;i.emplaceBack(0,0,0,0),i.emplaceBack(s,0,32767,0),i.emplaceBack(0,s,0,32767),i.emplaceBack(s,s,32767,32767),this.rasterBoundsBuffer=new f(i.serialize(),d.serialize(),f.BufferType.VERTEX),this.rasterBoundsVAO=new h},m.prototype.clearColor=function(){var t=this.gl;t.clearColor(0,0,0,0),t.clear(t.COLOR_BUFFER_BIT)},m.prototype.clearStencil=function(){var t=this.gl;t.clearStencil(0),t.stencilMask(255),t.clear(t.STENCIL_BUFFER_BIT)},m.prototype.clearDepth=function(){var t=this.gl;t.clearDepth(1),this.depthMask(!0),t.clear(t.DEPTH_BUFFER_BIT)},m.prototype._renderTileClippingMasks=function(t){var e=this.gl;e.colorMask(!1,!1,!1,!1),this.depthMask(!1),e.disable(e.DEPTH_TEST),e.enable(e.STENCIL_TEST),e.stencilMask(248),e.stencilOp(e.KEEP,e.KEEP,e.REPLACE);var r=1;this._tileClippingMaskIDs={};for(var n=0;n<t.length;n++){var i=t[n],a=this._tileClippingMaskIDs[i.id]=r++<<3;e.stencilFunc(e.ALWAYS,a,248);var o=p([{name:"u_color",components:4},{name:"u_opacity",components:1}]),s=this.useProgram("fill",[],o,o);e.uniformMatrix4fv(s.u_matrix,!1,i.posMatrix),this.tileExtentVAO.bind(e,s,this.tileExtentBuffer),e.drawArrays(e.TRIANGLE_STRIP,0,this.tileExtentBuffer.length)}e.stencilMask(0),e.colorMask(!0,!0,!0,!0),this.depthMask(!0),e.enable(e.DEPTH_TEST)},m.prototype.enableTileClippingMask=function(t){var e=this.gl;e.stencilFunc(e.EQUAL,this._tileClippingMaskIDs[t.id],248)},m.prototype.prepareBuffers=function(){},m.prototype.bindDefaultFramebuffer=function(){var t=this.gl;t.bindFramebuffer(t.FRAMEBUFFER,null)};var v={symbol:t("./draw_symbol"),circle:t("./draw_circle"),line:t("./draw_line"),fill:t("./draw_fill"),raster:t("./draw_raster"),background:t("./draw_background"),debug:t("./draw_debug")};m.prototype.render=function(t,e){this.style=t,this.options=e,this.lineAtlas=t.lineAtlas,this.spriteAtlas=t.spriteAtlas,this.spriteAtlas.setSprite(t.sprite),this.glyphSource=t.glyphSource,this.frameHistory.record(this.transform.zoom),this.prepareBuffers(),this.clearColor(),this.clearDepth(),this.showOverdrawInspector(e.showOverdrawInspector),this.depthRange=(t._order.length+2)*this.numSublayers*this.depthEpsilon,this.renderPass({isOpaquePass:!0}),this.renderPass({isOpaquePass:!1})},m.prototype.renderPass=function(t){var e=this.style._groups,r=t.isOpaquePass;this.currentLayer=r?this.style._order.length:-1;for(var n=0;n<e.length;n++){var i,a=e[r?e.length-1-n:n],o=this.style.sources[a.source],s=[];if(o){for(s=o.getVisibleCoordinates(),i=0;i<s.length;i++)s[i].posMatrix=this.transform.calculatePosMatrix(s[i],o.maxzoom);this.clearStencil(),o.prepare&&o.prepare(),o.isTileClipped&&this._renderTileClippingMasks(s)}for(r?(this._showOverdrawInspector||this.gl.disable(this.gl.BLEND),this.isOpaquePass=!0):(this.gl.enable(this.gl.BLEND),this.isOpaquePass=!1,s.reverse()),i=0;i<a.length;i++){var l=a[r?a.length-1-i:i];this.currentLayer+=r?-1:1,this.renderLayer(this,o,l,s)}o&&v.debug(this,o,s)}},m.prototype.depthMask=function(t){t!==this._depthMask&&(this._depthMask=t,this.gl.depthMask(t))},m.prototype.renderLayer=function(t,e,r,n){r.isHidden(this.transform.zoom)||("background"===r.type||n.length)&&(this.id=r.id,v[r.type](t,e,r,n))},m.prototype.setDepthSublayer=function(t){var e=1-((1+this.currentLayer)*this.numSublayers+t)*this.depthEpsilon,r=e-1+this.depthRange;this.gl.depthRange(r,e)},m.prototype.translatePosMatrix=function(t,e,r,n){if(!r[0]&&!r[1])return t;if("viewport"===n){var a=Math.sin(-this.transform.angle),o=Math.cos(-this.transform.angle);r=[r[0]*o-r[1]*a,r[0]*a+r[1]*o]}var s=[l(e,r[0],this.transform.zoom),l(e,r[1],this.transform.zoom),0],c=new Float32Array(16);return i.translate(c,t,s),c},m.prototype.saveTexture=function(t){var e=this.reusableTextures[t.size];e?e.push(t):this.reusableTextures[t.size]=[t]},m.prototype.getTexture=function(t){var e=this.reusableTextures[t];return e&&e.length>0?e.pop():null},m.prototype.lineWidth=function(t){this.gl.lineWidth(c.clamp(t,this.lineWidthRange[0],this.lineWidthRange[1]))},m.prototype.showOverdrawInspector=function(t){if(t||this._showOverdrawInspector){this._showOverdrawInspector=t;var e=this.gl;if(t){e.blendFunc(e.CONSTANT_COLOR,e.ONE);e.blendColor(1/8,1/8,1/8,0),e.clearColor(0,0,0,1),e.clear(e.COLOR_BUFFER_BIT)}else e.blendFunc(e.ONE,e.ONE_MINUS_SRC_ALPHA)}}},{"../data/bucket":301,"../data/buffer":306,"../source/pixels_to_tile_units":335,"../source/source_cache":339,"../util/browser":398,"../util/struct_array":412,"../util/util":414,"./create_uniform_pragmas":316,"./draw_background":317,"./draw_circle":318,"./draw_debug":320,"./draw_fill":321,"./draw_line":322,"./draw_raster":323,"./draw_symbol":324,"./frame_history":325,"./painter/use_program":328,"./vertex_array_object":329,"gl-matrix":198}],328:[function(t,e,r){"use strict";var n=t("assert"),i=t("../../util/util"),a=t("mapbox-gl-shaders"),o=a.util;function s(t,e){return t.replace(/#pragma mapbox: ([\w]+) ([\w]+) ([\w]+) ([\w]+)/g,function(t,r,n,i,a){return e[r][a].replace(/{type}/g,i).replace(/{precision}/g,n)})}e.exports._createProgram=function(t,e,r,l){for(var c=this.gl,u=c.createProgram(),f=a[t],h="#define MAPBOX_GL_JS;\n",d=0;d<e.length;d++)h+="#define "+e[d]+";\n";var p=c.createShader(c.FRAGMENT_SHADER);c.shaderSource(p,s(h+f.fragmentSource,l)),c.compileShader(p),n(c.getShaderParameter(p,c.COMPILE_STATUS),c.getShaderInfoLog(p)),c.attachShader(u,p);var m=c.createShader(c.VERTEX_SHADER);c.shaderSource(m,s(h+o+f.vertexSource,r)),c.compileShader(m),n(c.getShaderParameter(m,c.COMPILE_STATUS),c.getShaderInfoLog(m)),c.attachShader(u,m),c.linkProgram(u),n(c.getProgramParameter(u,c.LINK_STATUS),c.getProgramInfoLog(u));for(var v={},g=c.getProgramParameter(u,c.ACTIVE_ATTRIBUTES),y=0;y<g;y++){var b=c.getActiveAttrib(u,y);v[b.name]=c.getAttribLocation(u,b.name)}for(var x={},_=c.getProgramParameter(u,c.ACTIVE_UNIFORMS),w=0;w<_;w++){var M=c.getActiveUniform(u,w);x[M.name]=c.getUniformLocation(u,M.name)}return i.extend({program:u,definition:f,attributes:v,numAttributes:g},v,x)},e.exports._createProgramCached=function(t,e,r,n){this.cache=this.cache||{};var i=JSON.stringify({name:t,defines:e,vertexPragmas:r,fragmentPragmas:n});return this.cache[i]||(this.cache[i]=this._createProgram(t,e,r,n)),this.cache[i]},e.exports.useProgram=function(t,e,r,n){var i=this.gl;e=e||[],this._showOverdrawInspector&&(e=e.concat("OVERDRAW_INSPECTOR"));var a=this._createProgramCached(t,e,r,n);return this.currentProgram!==a&&(i.useProgram(a.program),this.currentProgram=a),a}},{"../../util/util":414,assert:51,"mapbox-gl-shaders":275}],329:[function(t,e,r){"use strict";var n=t("assert");function i(){this.boundProgram=null,this.boundVertexBuffer=null,this.boundVertexBuffer2=null,this.boundElementBuffer=null,this.vao=null}e.exports=i,i.prototype.bind=function(t,e,r,n,i){void 0===t.extVertexArrayObject&&(t.extVertexArrayObject=t.getExtension("OES_vertex_array_object"));var a=!this.vao||this.boundProgram!==e||this.boundVertexBuffer!==r||this.boundVertexBuffer2!==i||this.boundElementBuffer!==n;!t.extVertexArrayObject||a?this.freshBind(t,e,r,n,i):t.extVertexArrayObject.bindVertexArrayOES(this.vao)},i.prototype.freshBind=function(t,e,r,i,a){var o,s=e.numAttributes;if(t.extVertexArrayObject)this.vao&&this.destroy(t),this.vao=t.extVertexArrayObject.createVertexArrayOES(),t.extVertexArrayObject.bindVertexArrayOES(this.vao),o=0,this.boundProgram=e,this.boundVertexBuffer=r,this.boundVertexBuffer2=a,this.boundElementBuffer=i;else{o=t.currentNumAttributes||0;for(var l=s;l<o;l++)n(0!==l),t.disableVertexAttribArray(l)}for(var c=o;c<s;c++)t.enableVertexAttribArray(c);r.bind(t),r.setVertexAttribPointers(t,e),a&&(a.bind(t),a.setVertexAttribPointers(t,e)),i&&i.bind(t),t.currentNumAttributes=s},i.prototype.unbind=function(t){var e=t.extVertexArrayObject;e&&e.bindVertexArrayOES(null)},i.prototype.destroy=function(t){var e=t.extVertexArrayObject;e&&this.vao&&(e.deleteVertexArrayOES(this.vao),this.vao=null)}},{assert:51}],330:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("resolve-url"),o=t("../data/bucket").EXTENT;function s(t,e,r){e=e||{},this.id=t,this.dispatcher=r,this._data=e.data,void 0!==e.maxzoom&&(this.maxzoom=e.maxzoom),e.type&&(this.type=e.type);var n=o/this.tileSize;this.workerOptions=i.extend({source:this.id,cluster:e.cluster||!1,geojsonVtOptions:{buffer:(void 0!==e.buffer?e.buffer:128)*n,tolerance:(void 0!==e.tolerance?e.tolerance:.375)*n,extent:o,maxZoom:this.maxzoom},superclusterOptions:{maxZoom:Math.min(e.clusterMaxZoom,this.maxzoom-1)||this.maxzoom-1,extent:o,radius:(e.clusterRadius||50)*n,log:!1}},e.workerOptions),this._updateWorkerData(function(t){t?this.fire("error",{error:t}):this.fire("load")}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{type:"geojson",minzoom:0,maxzoom:18,tileSize:512,isTileClipped:!0,reparseOverscaled:!0,onAdd:function(t){this.map=t},setData:function(t){return this._data=t,this._updateWorkerData(function(t){if(t)return this.fire("error",{error:t});this.fire("change")}.bind(this)),this},_updateWorkerData:function(t){var e=i.extend({},this.workerOptions),r=this._data;"string"==typeof r?e.url="undefined"!=typeof window?a(window.location.href,r):r:e.data=JSON.stringify(r),this.workerID=this.dispatcher.send(this.type+".loadData",e,function(e){this._loaded=!0,t(e)}.bind(this))},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={type:this.type,uid:t.uid,coord:t.coord,zoom:t.coord.z,maxZoom:this.maxzoom,tileSize:this.tileSize,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};t.workerID=this.dispatcher.send("load tile",n,function(r,n){if(t.unloadVectorData(this.map.painter),!t.aborted)return r?e(r):(t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null))}.bind(this),this.workerID)},abortTile:function(t){t.aborted=!0},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},function(){},t.workerID)},serialize:function(){return{type:this.type,data:this._data}}})},{"../data/bucket":301,"../util/evented":406,"../util/util":414,"resolve-url":488}],331:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("geojson-rewind"),o=t("./geojson_wrapper"),s=t("vt-pbf"),l=t("supercluster"),c=t("geojson-vt"),u=t("./vector_tile_worker_source");function f(t,e,r){r&&(this.loadGeoJSON=r),u.call(this,t,e)}e.exports=f,f.prototype=n.inherit(u,{_geoJSONIndexes:{},loadVectorData:function(t,e){var r=t.source,n=t.coord;if(!this._geoJSONIndexes[r])return e(null,null);var i=this._geoJSONIndexes[r].getTile(Math.min(n.z,t.maxZoom),n.x,n.y);if(!i)return e(null,null);var a=new o(i.features);a.name="_geojsonTileLayer";var l=s({layers:{_geojsonTileLayer:a}});0===l.byteOffset&&l.byteLength===l.buffer.byteLength||(l=new Uint8Array(l)),e(null,{tile:a,rawTileData:l.buffer})},loadData:function(t,e){var r=function(r,n){return r?e(r):"object"!=typeof n?e(new Error("Input data is not a valid GeoJSON object.")):(a(n,!0),void this._indexData(n,t,function(r,n){if(r)return e(r);this._geoJSONIndexes[t.source]=n,e(null)}.bind(this)))}.bind(this);this.loadGeoJSON(t,r)},loadGeoJSON:function(t,e){if(t.url)i.getJSON(t.url,e);else{if("string"!=typeof t.data)return e(new Error("Input data is not a valid GeoJSON object."));try{return e(null,JSON.parse(t.data))}catch(t){return e(new Error("Input data is not a valid GeoJSON object."))}}},_indexData:function(t,e,r){try{e.cluster?r(null,l(e.superclusterOptions).load(t.features)):r(null,c(t,e.geojsonVtOptions))}catch(t){return r(t)}}})},{"../util/ajax":397,"../util/util":414,"./geojson_wrapper":332,"./vector_tile_worker_source":343,"geojson-rewind":147,"geojson-vt":151,supercluster:518,"vt-pbf":550}],332:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("vector-tile").VectorTileFeature,a=t("../data/bucket").EXTENT;function o(t){this.features=t,this.length=t.length,this.extent=a}function s(t){if(this.type=t.type,1===t.type){this.rawGeometry=[];for(var e=0;e<t.geometry.length;e++)this.rawGeometry.push([t.geometry[e]])}else this.rawGeometry=t.geometry;this.properties=t.tags,this.extent=a}e.exports=o,o.prototype.feature=function(t){return new s(this.features[t])},s.prototype.loadGeometry=function(){var t=this.rawGeometry;this.geometry=[];for(var e=0;e<t.length;e++){for(var r=t[e],i=[],a=0;a<r.length;a++)i.push(new n(r[a][0],r[a][1]));this.geometry.push(i)}return this.geometry},s.prototype.bbox=function(){this.geometry||this.loadGeometry();for(var t=this.geometry,e=1/0,r=-1/0,n=1/0,i=-1/0,a=0;a<t.length;a++)for(var o=t[a],s=0;s<o.length;s++){var l=o[s];e=Math.min(e,l.x),r=Math.max(r,l.x),n=Math.min(n,l.y),i=Math.max(i,l.y)}return[e,n,r,i]},s.prototype.toGeoJSON=i.prototype.toGeoJSON},{"../data/bucket":301,"point-geometry":458,"vector-tile":544}],333:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e,r){this.id=t,this.dispatcher=r,this.url=e.url,this.coordinates=e.coordinates,l.getImage(e.url,function(t,r){if(t)return this.fire("error",{error:t});this.image=r,this.image.addEventListener("load",function(){this.map._rerender()}.bind(this)),this._loaded=!0,this.fire("load"),this.map&&this.setCoordinates(e.coordinates)}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,onAdd:function(t){this.map=t,this.image&&this.setCoordinates(this.coordinates)},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(this._loaded&&this.image&&this.image.complete&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.image)):(this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.image))}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"image",urls:this.url,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],334:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSourceURL;e.exports=function(t,e){var r=function(t,r){if(t)return e(t);var i=n.pick(r,["tiles","minzoom","maxzoom","attribution"]);r.vector_layers&&(i.vectorLayers=r.vector_layers,i.vectorLayerIds=i.vectorLayers.map(function(t){return t.id})),e(null,i)};t.url?i.getJSON(o(t.url),r):a.frame(r.bind(null,null,t))}},{"../util/ajax":397,"../util/browser":398,"../util/mapbox":411,"../util/util":414}],335:[function(t,e,r){"use strict";var n=t("../data/bucket");e.exports=function(t,e,r){return e*(n.EXTENT/(t.tileSize*Math.pow(2,r-t.coord.z)))}},{"../data/bucket":301}],336:[function(t,e,r){"use strict";var n=t("./tile_coord");function i(t,e){var r=t.coord,n=e.coord;return r.z-n.z||r.y-n.y||r.w-n.w||r.x-n.x}r.rendered=function(t,e,r,n,a,o){var s=t.tilesIn(r);s.sort(i);for(var l=[],c=0;c<s.length;c++){var u=s[c];u.tile.featureIndex&&l.push(u.tile.featureIndex.query({queryGeometry:u.queryGeometry,scale:u.scale,tileSize:u.tile.tileSize,bearing:o,params:n},e))}return function(t){for(var e=t[0]||{},r=1;r<t.length;r++){var n=t[r];for(var i in n){var a=n[i],o=e[i];if(void 0===o)o=e[i]=a;else for(var s=0;s<a.length;s++)o.push(a[s])}}return e}(l)},r.source=function(t,e){for(var r=t.getRenderableIds().map(function(e){return t.getTileByID(e)}),i=[],a={},o=0;o<r.length;o++){var s=r[o],l=new n(Math.min(s.sourceMaxZoom,s.coord.z),s.coord.x,s.coord.y,0).id;a[l]||(a[l]=!0,s.querySourceFeatures(i,e))}return i}},{"./tile_coord":341}],337:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/ajax"),a=t("../util/evented"),o=t("./load_tilejson"),s=t("../util/mapbox").normalizeTileURL;function l(t,e,r){this.id=t,this.dispatcher=r,n.extend(this,n.pick(e,["url","scheme","tileSize"])),o(e,function(t,e){if(t)return this.fire("error",t);n.extend(this,e),this.fire("load")}.bind(this))}e.exports=l,l.prototype=n.inherit(a,{minzoom:0,maxzoom:22,roundZoom:!0,scheme:"xyz",tileSize:512,_loaded:!1,onAdd:function(t){this.map=t},serialize:function(){return{type:"raster",url:this.url,tileSize:this.tileSize}},loadTile:function(t,e){var r=s(t.coord.url(this.tiles,null,this.scheme),this.url,this.tileSize);t.request=i.getImage(r,function(r,n){if(delete t.request,t.aborted)return;if(r)return e(r);var i=this.map.painter.gl;t.texture=this.map.painter.getTexture(n.width),t.texture?(i.bindTexture(i.TEXTURE_2D,t.texture),i.texSubImage2D(i.TEXTURE_2D,0,0,0,i.RGBA,i.UNSIGNED_BYTE,n)):(t.texture=i.createTexture(),i.bindTexture(i.TEXTURE_2D,t.texture),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MIN_FILTER,i.LINEAR_MIPMAP_NEAREST),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_MAG_FILTER,i.LINEAR),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_S,i.CLAMP_TO_EDGE),i.texParameteri(i.TEXTURE_2D,i.TEXTURE_WRAP_T,i.CLAMP_TO_EDGE),i.pixelStorei(i.UNPACK_PREMULTIPLY_ALPHA_WEBGL,!0),i.texImage2D(i.TEXTURE_2D,0,i.RGBA,i.RGBA,i.UNSIGNED_BYTE,n),t.texture.size=n.width);i.generateMipmap(i.TEXTURE_2D),this.map.animationLoop.set(this.map.style.rasterFadeDuration),t.state="loaded",e(null)}.bind(this))},abortTile:function(t){t.request&&(t.request.abort(),delete t.request)},unloadTile:function(t){t.texture&&this.map.painter.saveTexture(t.texture)}})},{"../util/ajax":397,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],338:[function(t,e,r){"use strict";var n=t("../util/util"),i={vector:t("../source/vector_tile_source"),raster:t("../source/raster_tile_source"),geojson:t("../source/geojson_source"),video:t("../source/video_source"),image:t("../source/image_source")};r.create=function(t,e,r){if((e=new i[e.type](t,e,r)).id!==t)throw new Error("Expected Source id to be "+t+" instead of "+e.id);return n.bindAll(["load","abort","unload","serialize","prepare"],e),e},r.getType=function(t){return i[t]},r.setType=function(t,e){i[t]=e}},{"../source/geojson_source":330,"../source/image_source":333,"../source/raster_tile_source":337,"../source/vector_tile_source":342,"../source/video_source":344,"../util/util":414}],339:[function(t,e,r){"use strict";var n=t("./source"),i=t("./tile"),a=t("../util/evented"),o=t("./tile_coord"),s=t("../util/lru_cache"),l=t("../geo/coordinate"),c=t("../util/util"),u=t("../data/bucket").EXTENT;function f(t,e,r){this.id=t,this.dispatcher=r;var i=this._source=n.create(t,e,r).on("load",function(){this.map&&this._source.onAdd&&this._source.onAdd(this.map),this._sourceLoaded=!0,this.tileSize=i.tileSize,this.minzoom=i.minzoom,this.maxzoom=i.maxzoom,this.roundZoom=i.roundZoom,this.reparseOverscaled=i.reparseOverscaled,this.isTileClipped=i.isTileClipped,this.attribution=i.attribution,this.vectorLayerIds=i.vectorLayerIds,this.fire("load")}.bind(this)).on("error",function(t){this._sourceErrored=!0,this.fire("error",t)}.bind(this)).on("change",function(){this.reload(),this.transform&&this.update(this.transform,this.map&&this.map.style.rasterFadeDuration),this.fire("change")}.bind(this));this._tiles={},this._cache=new s(0,this.unloadTile.bind(this)),this._isIdRenderable=this._isIdRenderable.bind(this)}function h(t,e,r){var n=r.zoomTo(Math.min(t.z,e));return{x:(n.column-(t.x+t.w*Math.pow(2,t.z)))*u,y:(n.row-t.y)*u}}function d(t,e){return t%32-e%32}e.exports=f,f.maxOverzooming=10,f.maxUnderzooming=3,f.prototype=c.inherit(a,{onAdd:function(t){this.map=t,this._source&&this._source.onAdd&&this._source.onAdd(t)},loaded:function(){if(this._sourceErrored)return!0;if(!this._sourceLoaded)return!1;for(var t in this._tiles){var e=this._tiles[t];if("loaded"!==e.state&&"errored"!==e.state)return!1}return!0},getSource:function(){return this._source},loadTile:function(t,e){return this._source.loadTile(t,e)},unloadTile:function(t){if(this._source.unloadTile)return this._source.unloadTile(t)},abortTile:function(t){if(this._source.abortTile)return this._source.abortTile(t)},serialize:function(){return this._source.serialize()},prepare:function(){if(this._sourceLoaded&&this._source.prepare)return this._source.prepare()},getIds:function(){return Object.keys(this._tiles).map(Number).sort(d)},getRenderableIds:function(){return this.getIds().filter(this._isIdRenderable)},_isIdRenderable:function(t){return this._tiles[t].isRenderable()&&!this._coveredTiles[t]},reload:function(){for(var t in this._cache.reset(),this._tiles){var e=this._tiles[t];"loading"!==e.state&&(e.state="reloading"),this.loadTile(this._tiles[t],this._tileLoaded.bind(this,this._tiles[t]))}},_tileLoaded:function(t,e){if(e)return t.state="errored",this.fire("tile.error",{tile:t,error:e}),void this._source.fire("tile.error",{tile:t,error:e});t.source=this,t.timeAdded=(new Date).getTime(),this.fire("tile.load",{tile:t}),this._source.fire("tile.load",{tile:t})},getTile:function(t){return this.getTileByID(t.id)},getTileByID:function(t){return this._tiles[t]},getZoom:function(t){return t.zoom+t.scaleZoom(t.tileSize/this.tileSize)},findLoadedChildren:function(t,e,r){var n=!1;for(var i in this._tiles){var a=this._tiles[i];if(!(r[i]||!a.isRenderable()||a.coord.z<=t.z||a.coord.z>e)){var o=Math.pow(2,Math.min(a.coord.z,this.maxzoom)-Math.min(t.z,this.maxzoom));if(Math.floor(a.coord.x/o)===t.x&&Math.floor(a.coord.y/o)===t.y)for(r[i]=!0,n=!0;a&&a.coord.z-1>t.z;){var s=a.coord.parent(this.maxzoom).id;(a=this._tiles[s])&&a.isRenderable()&&(delete r[i],r[s]=!0)}}}return n},findLoadedParent:function(t,e,r){for(var n=t.z-1;n>=e;n--){t=t.parent(this.maxzoom);var i=this._tiles[t.id];if(i&&i.isRenderable())return r[t.id]=!0,i;if(this._cache.has(t.id))return this.addTile(t),r[t.id]=!0,this._tiles[t.id]}},updateCacheSize:function(t){var e=(Math.ceil(t.width/t.tileSize)+1)*(Math.ceil(t.height/t.tileSize)+1);this._cache.setMaxSize(Math.floor(5*e))},update:function(t,e){if(this._sourceLoaded){var r,n,i;this.updateCacheSize(t);var a=(this.roundZoom?Math.round:Math.floor)(this.getZoom(t)),s=Math.max(a-f.maxOverzooming,this.minzoom),l=Math.max(a+f.maxUnderzooming,this.minzoom),u={},h=(new Date).getTime();this._coveredTiles={};var d=this.used?t.coveringTiles(this._source):[];for(r=0;r<d.length;r++)n=d[r],i=this.addTile(n),u[n.id]=!0,i.isRenderable()||this.findLoadedChildren(n,l,u)||this.findLoadedParent(n,s,u);for(var p,m={},v=Object.keys(u),g=0;g<v.length;g++){var y=v[g];n=o.fromID(y),(i=this._tiles[y])&&i.timeAdded>h-(e||0)&&(this.findLoadedChildren(n,l,u)&&(u[y]=!0),this.findLoadedParent(n,s,m))}for(p in m)u[p]||(this._coveredTiles[p]=!0);for(p in m)u[p]=!0;var b=c.keysDifference(this._tiles,u);for(r=0;r<b.length;r++)this.removeTile(+b[r]);this.transform=t}},addTile:function(t){var e=this._tiles[t.id];if(e)return e;var r=t.wrapped();if((e=this._tiles[r.id])||(e=this._cache.get(r.id))&&this._redoPlacement&&this._redoPlacement(e),!e){var n=t.z,a=n>this.maxzoom?Math.pow(2,n-this.maxzoom):1;e=new i(r,this.tileSize*a,this.maxzoom),this.loadTile(e,this._tileLoaded.bind(this,e))}return e.uses++,this._tiles[t.id]=e,this.fire("tile.add",{tile:e}),this._source.fire("tile.add",{tile:e}),e},removeTile:function(t){var e=this._tiles[t];e&&(e.uses--,delete this._tiles[t],this.fire("tile.remove",{tile:e}),this._source.fire("tile.remove",{tile:e}),e.uses>0||(e.isRenderable()?this._cache.add(e.coord.wrapped().id,e):(e.aborted=!0,this.abortTile(e),this.unloadTile(e))))},clearTiles:function(){for(var t in this._tiles)this.removeTile(t);this._cache.reset()},tilesIn:function(t){for(var e={},r=this.getIds(),n=1/0,i=1/0,a=-1/0,s=-1/0,c=t[0].zoom,f=0;f<t.length;f++){var d=t[f];n=Math.min(n,d.column),i=Math.min(i,d.row),a=Math.max(a,d.column),s=Math.max(s,d.row)}for(var p=0;p<r.length;p++){var m=this._tiles[r[p]],v=o.fromID(r[p]),g=[h(v,m.sourceMaxZoom,new l(n,i,c)),h(v,m.sourceMaxZoom,new l(a,s,c))];if(g[0].x<u&&g[0].y<u&&g[1].x>=0&&g[1].y>=0){for(var y=[],b=0;b<t.length;b++)y.push(h(v,m.sourceMaxZoom,t[b]));var x=e[m.coord.id];void 0===x&&(x=e[m.coord.id]={tile:m,coord:v,queryGeometry:[],scale:Math.pow(2,this.transform.zoom-m.coord.z)}),x.queryGeometry.push(y)}}var _=[];for(var w in e)_.push(e[w]);return _},redoPlacement:function(){for(var t=this.getIds(),e=0;e<t.length;e++){this.getTileByID(t[e]).redoPlacement(this)}},getVisibleCoordinates:function(){return this.getRenderableIds().map(o.fromID)}})},{"../data/bucket":301,"../geo/coordinate":310,"../util/evented":406,"../util/lru_cache":410,"../util/util":414,"./source":338,"./tile":340,"./tile_coord":341}],340:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../data/bucket"),a=t("../data/feature_index"),o=t("vector-tile"),s=t("pbf"),l=t("../util/vectortile_to_geojson"),c=t("feature-filter"),u=t("../symbol/collision_tile"),f=t("../symbol/collision_box"),h=t("../symbol/symbol_instances"),d=t("../symbol/symbol_quads");function p(t,e,r){this.coord=t,this.uid=n.uniqueId(),this.uses=0,this.tileSize=e,this.sourceMaxZoom=r,this.buckets={},this.state="loading"}function m(t,e){if(e){for(var r={},a=0;a<t.length;a++){var o=e.getLayer(t[a].layerId);if(o){var s=i.create(n.extend({layer:o,childLayers:t[a].childLayerIds.map(e.getLayer.bind(e)).filter(function(t){return t})},t[a]));r[s.id]=s}}return r}}e.exports=p,p.prototype={loadVectorData:function(t,e){this.state="loaded",t&&(this.collisionBoxArray=new f(t.collisionBoxArray),this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.symbolInstancesArray=new h(t.symbolInstancesArray),this.symbolQuadsArray=new d(t.symbolQuadsArray),this.featureIndex=new a(t.featureIndex,t.rawTileData,this.collisionTile),this.rawTileData=t.rawTileData,this.buckets=m(t.buckets,e))},reloadSymbolData:function(t,e,r){if("unloaded"!==this.state){for(var i in this.collisionTile=new u(t.collisionTile,this.collisionBoxArray),this.featureIndex.setCollisionTile(this.collisionTile),this.buckets){var a=this.buckets[i];"symbol"===a.type&&(a.destroy(e.gl),delete this.buckets[i])}n.extend(this.buckets,m(t.buckets,r))}},unloadVectorData:function(t){for(var e in this.buckets){this.buckets[e].destroy(t.gl)}this.collisionBoxArray=null,this.symbolQuadsArray=null,this.symbolInstancesArray=null,this.collisionTile=null,this.featureIndex=null,this.rawTileData=null,this.buckets=null,this.state="unloaded"},redoPlacement:function(t){"loaded"===this.state&&"reloading"!==this.state?(this.state="reloading",t.dispatcher.send("redo placement",{uid:this.uid,source:t.id,angle:t.map.transform.angle,pitch:t.map.transform.pitch,showCollisionBoxes:t.map.showCollisionBoxes},function(e,r){this.reloadSymbolData(r,t.map.painter,t.map.style),t.fire("tile.load",{tile:this}),this.state="loaded",this.redoWhenDone&&(this.redoPlacement(t),this.redoWhenDone=!1)}.bind(this),this.workerID)):this.redoWhenDone=!0},getBucket:function(t){return this.buckets&&this.buckets[t.ref||t.id]},querySourceFeatures:function(t,e){if(this.rawTileData){this.vtLayers||(this.vtLayers=new o.VectorTile(new s(new Uint8Array(this.rawTileData))).layers);var r=this.vtLayers._geojsonTileLayer||this.vtLayers[e.sourceLayer];if(r)for(var n=c(e.filter),i={z:this.coord.z,x:this.coord.x,y:this.coord.y},a=0;a<r.length;a++){var u=r.feature(a);if(n(u)){var f=new l(u,this.coord.z,this.coord.x,this.coord.y);f.tile=i,t.push(f)}}}},isRenderable:function(){return"loaded"===this.state||"reloading"===this.state}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/util":414,"../util/vectortile_to_geojson":415,"feature-filter":141,pbf:451,"vector-tile":544}],341:[function(t,e,r){"use strict";var n=t("assert"),i=t("whoots-js"),a=t("../geo/coordinate");function o(t,e,r,i){n(!isNaN(t)&&t>=0&&t%1==0),n(!isNaN(e)&&e>=0&&e%1==0),n(!isNaN(r)&&r>=0&&r%1==0),isNaN(i)&&(i=0),this.z=+t,this.x=+e,this.y=+r,this.w=+i,(i*=2)<0&&(i=-1*i-1);var a=1<<this.z;this.id=32*(a*a*i+a*this.y+this.x)+this.z,this.posMatrix=null}function s(t,e){if(t.row>e.row){var r=t;t=e,e=r}return{x0:t.column,y0:t.row,x1:e.column,y1:e.row,dx:e.column-t.column,dy:e.row-t.row}}function l(t,e,r,n,i){var a=Math.max(r,Math.floor(e.y0)),o=Math.min(n,Math.ceil(e.y1));if(t.x0===e.x0&&t.y0===e.y0?t.x0+e.dy/t.dy*t.dx<e.x1:t.x1-e.dy/t.dy*t.dx<e.x0){var s=t;t=e,e=s}for(var l=t.dx/t.dy,c=e.dx/e.dy,u=t.dx>0,f=e.dx<0,h=a;h<o;h++){var d=l*Math.max(0,Math.min(t.dy,h+u-t.y0))+t.x0,p=c*Math.max(0,Math.min(e.dy,h+f-e.y0))+e.x0;i(Math.floor(p),Math.ceil(d),h)}}function c(t,e,r,n,i,a){var o,c=s(t,e),u=s(e,r),f=s(r,t);c.dy>u.dy&&(o=c,c=u,u=o),c.dy>f.dy&&(o=c,c=f,f=o),u.dy>f.dy&&(o=u,u=f,f=o),c.dy&&l(f,c,n,i,a),u.dy&&l(f,u,n,i,a)}e.exports=o,o.prototype.toString=function(){return this.z+"/"+this.x+"/"+this.y},o.prototype.toCoordinate=function(t){var e=Math.min(this.z,t),r=Math.pow(2,e),n=this.y,i=this.x+r*this.w;return new a(i,n,e)},o.fromID=function(t){var e=t%32,r=1<<e,n=(t-e)/32,i=n%r,a=(n-i)/r%r,s=Math.floor(n/(r*r));return s%2!=0&&(s=-1*s-1),new o(e,i,a,s/=2)},o.prototype.url=function(t,e,r){var n=i.getTileBBox(this.x,this.y,this.z),a=function(t,e,r){for(var n,i="",a=t;a>0;a--)i+=(e&(n=1<<a-1)?1:0)+(r&n?2:0);return i}(this.z,this.x,this.y);return t[(this.x+this.y)%t.length].replace("{prefix}",(this.x%16).toString(16)+(this.y%16).toString(16)).replace("{z}",Math.min(this.z,e||this.z)).replace("{x}",this.x).replace("{y}","tms"===r?Math.pow(2,this.z)-this.y-1:this.y).replace("{quadkey}",a).replace("{bbox-epsg-3857}",n)},o.prototype.parent=function(t){return 0===this.z?null:this.z>t?new o(this.z-1,this.x,this.y,this.w):new o(this.z-1,Math.floor(this.x/2),Math.floor(this.y/2),this.w)},o.prototype.wrapped=function(){return new o(this.z,this.x,this.y,0)},o.prototype.children=function(t){if(this.z>=t)return[new o(this.z+1,this.x,this.y,this.w)];var e=this.z+1,r=2*this.x,n=2*this.y;return[new o(e,r,n,this.w),new o(e,r+1,n,this.w),new o(e,r,n+1,this.w),new o(e,r+1,n+1,this.w)]},o.cover=function(t,e,r){var n=1<<t,i={};function a(t,e,a){var s,l;if(a>=0&&a<=n)for(s=t;s<e;s++)l=new o(r,(s%n+n)%n,a,Math.floor(s/n)),i[l.id]=l}return c(e[0],e[1],e[2],0,n,a),c(e[2],e[3],e[0],0,n,a),Object.keys(i).map(function(t){return i[t]})}},{"../geo/coordinate":310,assert:51,"whoots-js":560}],342:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/util"),a=t("./load_tilejson"),o=t("../util/mapbox").normalizeTileURL;function s(t,e,r){if(this.id=t,this.dispatcher=r,i.extend(this,i.pick(e,["url","scheme","tileSize"])),this._options=i.extend({type:"vector"},e),512!==this.tileSize)throw new Error("vector tile sources must have a tileSize of 512");a(e,function(t,e){t?this.fire("error",t):(i.extend(this,e),this.fire("load"))}.bind(this))}e.exports=s,s.prototype=i.inherit(n,{minzoom:0,maxzoom:22,scheme:"xyz",tileSize:512,reparseOverscaled:!0,isTileClipped:!0,onAdd:function(t){this.map=t},serialize:function(){return i.extend({},this._options)},loadTile:function(t,e){var r=t.coord.z>this.maxzoom?Math.pow(2,t.coord.z-this.maxzoom):1,n={url:o(t.coord.url(this.tiles,this.maxzoom,this.scheme),this.url),uid:t.uid,coord:t.coord,zoom:t.coord.z,tileSize:this.tileSize*r,source:this.id,overscaling:r,angle:this.map.transform.angle,pitch:this.map.transform.pitch,showCollisionBoxes:this.map.showCollisionBoxes};function i(r,n){if(!t.aborted){if(r)return e(r);t.loadVectorData(n,this.map.style),t.redoWhenDone&&(t.redoWhenDone=!1,t.redoPlacement(this)),e(null),t.reloadCallback&&(this.loadTile(t,t.reloadCallback),t.reloadCallback=null)}}t.workerID?"loading"===t.state?t.reloadCallback=e:(n.rawTileData=t.rawTileData,this.dispatcher.send("reload tile",n,i.bind(this),t.workerID)):t.workerID=this.dispatcher.send("load tile",n,i.bind(this))},abortTile:function(t){this.dispatcher.send("abort tile",{uid:t.uid,source:this.id},null,t.workerID)},unloadTile:function(t){t.unloadVectorData(this.map.painter),this.dispatcher.send("remove tile",{uid:t.uid,source:this.id},null,t.workerID)}})},{"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./load_tilejson":334}],343:[function(t,e,r){"use strict";var n=t("../util/ajax"),i=t("vector-tile"),a=t("pbf"),o=t("./worker_tile");function s(t,e,r){this.actor=t,this.styleLayers=e,r&&(this.loadVectorData=r),this.loading={},this.loaded={}}e.exports=s,s.prototype={loadTile:function(t,e){var r=t.source,n=t.uid;this.loading[r]||(this.loading[r]={});var i=this.loading[r][n]=new o(t);i.abort=this.loadVectorData(t,function(t,a){if(delete this.loading[r][n],t)return e(t);if(!a)return e(null,null);i.data=a.tile,i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,a.rawTileData,e),this.loaded[r]=this.loaded[r]||{},this.loaded[r][n]=i}.bind(this))},reloadTile:function(t,e){var r=this.loaded[t.source],n=t.uid;if(r&&r[n]){var i=r[n];i.parse(i.data,this.styleLayers.getLayerFamilies(),this.actor,t.rawTileData,e)}},abortTile:function(t){var e=this.loading[t.source],r=t.uid;e&&e[r]&&e[r].abort&&(e[r].abort(),delete e[r])},removeTile:function(t){var e=this.loaded[t.source],r=t.uid;e&&e[r]&&delete e[r]},loadVectorData:function(t,e){var r=n.getArrayBuffer(t.url,function(t,r){if(t)return e(t);var n=new i.VectorTile(new a(new Uint8Array(r)));e(t,{tile:n,rawTileData:r})}.bind(this));return function(){r.abort()}},redoPlacement:function(t,e){var r=this.loaded[t.source],n=this.loading[t.source],i=t.uid;if(r&&r[i]){var a=r[i].redoPlacement(t.angle,t.pitch,t.showCollisionBoxes);a.result&&e(null,a.result,a.transferables)}else n&&n[i]&&(n[i].angle=t.angle)}}},{"../util/ajax":397,"./worker_tile":346,pbf:451,"vector-tile":544}],344:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./tile_coord"),a=t("../geo/lng_lat"),o=t("point-geometry"),s=t("../util/evented"),l=t("../util/ajax"),c=t("../data/bucket").EXTENT,u=t("../render/draw_raster").RasterBoundsArray,f=t("../data/buffer"),h=t("../render/vertex_array_object");function d(t,e){this.id=t,this.urls=e.urls,this.coordinates=e.coordinates,l.getVideo(e.urls,function(t,r){if(t)return this.fire("error",{error:t});var n;this.video=r,this.video.loop=!0,this.video.addEventListener("playing",function(){n=this.map.style.animationLoop.set(1/0),this.map._rerender()}.bind(this)),this.video.addEventListener("pause",function(){this.map.style.animationLoop.cancel(n)}.bind(this)),this.map&&(this.video.play(),this.setCoordinates(e.coordinates)),this.fire("load")}.bind(this))}e.exports=d,d.prototype=n.inherit(s,{minzoom:0,maxzoom:22,tileSize:512,roundZoom:!0,getVideo:function(){return this.video},onAdd:function(t){this.map||(this.map=t,this.video&&(this.video.play(),this.setCoordinates(this.coordinates)))},setCoordinates:function(t){this.coordinates=t;var e=this.map,r=t.map(function(t){return e.transform.locationCoordinate(a.convert(t)).zoomTo(0)}),s=this.centerCoord=n.getCoordinatesCenter(r);return s.column=Math.round(s.column),s.row=Math.round(s.row),this.minzoom=this.maxzoom=s.zoom,this._coord=new i(s.zoom,s.column,s.row),this._tileCoords=r.map(function(t){var e=t.zoomTo(s.zoom);return new o(Math.round((e.column-s.column)*c),Math.round((e.row-s.row)*c))}),this.fire("change"),this},_setTile:function(t){this._prepared=!1,this.tile=t;var e=new u;e.emplaceBack(this._tileCoords[0].x,this._tileCoords[0].y,0,0),e.emplaceBack(this._tileCoords[1].x,this._tileCoords[1].y,32767,0),e.emplaceBack(this._tileCoords[3].x,this._tileCoords[3].y,0,32767),e.emplaceBack(this._tileCoords[2].x,this._tileCoords[2].y,32767,32767),this.tile.buckets={},this.tile.boundsBuffer=new f(e.serialize(),u.serialize(),f.BufferType.VERTEX),this.tile.boundsVAO=new h,this.tile.state="loaded"},prepare:function(){if(!(this.video.readyState<2)&&this.tile){var t=this.map.painter.gl;this._prepared?(t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texSubImage2D(t.TEXTURE_2D,0,0,0,t.RGBA,t.UNSIGNED_BYTE,this.video)):(this._prepared=!0,this.tile.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.tile.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texImage2D(t.TEXTURE_2D,0,t.RGBA,t.RGBA,t.UNSIGNED_BYTE,this.video)),this._currentTime=this.video.currentTime}},loadTile:function(t,e){this._coord&&this._coord.toString()===t.coord.toString()?(this._setTile(t),e(null)):(t.state="errored",e(null))},serialize:function(){return{type:"video",urls:this.urls,coordinates:this.coordinates}}})},{"../data/bucket":301,"../data/buffer":306,"../geo/lng_lat":311,"../render/draw_raster":323,"../render/vertex_array_object":329,"../util/ajax":397,"../util/evented":406,"../util/util":414,"./tile_coord":341,"point-geometry":458}],345:[function(t,e,r){"use strict";var n=t("../util/actor"),i=t("../style/style_layer"),a=t("../util/util"),o=t("./vector_tile_worker_source"),s=t("./geojson_worker_source");function l(t){this.self=t,this.actor=new n(t,this);var e={getLayers:function(){return this.layers}.bind(this),getLayerFamilies:function(){return this.layerFamilies}.bind(this)};this.workerSources={vector:new o(this.actor,e),geojson:new s(this.actor,e)},this.self.registerWorkerSource=function(t,r){if(this.workerSources[t])throw new Error('Worker source with name "'+t+'" already registered.');this.workerSources[t]=new r(this.actor,e)}.bind(this)}function c(t){var e={};for(var r in t){var n=t[r],i=n.ref||n.id,a=t[i];a.layout&&"none"===a.layout.visibility||(e[i]=e[i]||[],r===i?e[i].unshift(n):e[i].push(n))}return e}e.exports=function(t){return new l(t)},a.extend(l.prototype,{"set layers":function(t){this.layers={};for(var e=this,r=[],n=0;n<t.length;n++){var a=t[n];"fill"!==a.type&&"line"!==a.type&&"circle"!==a.type&&"symbol"!==a.type||(a.ref?r.push(n):s(a))}for(var o=0;o<r.length;o++)s(t[r[o]]);function s(t){var r=i.create(t,t.ref&&e.layers[t.ref]);r.updatePaintTransitions({},{transition:!1}),e.layers[r.id]=r}this.layerFamilies=c(this.layers)},"update layers":function(t){var e,r,n=this;for(e in t)(r=t[e]).ref&&a(r);for(e in t)(r=t[e]).ref||a(r);function a(t){var e=n.layers[t.ref];n.layers[t.id]?n.layers[t.id].set(t,e):n.layers[t.id]=i.create(t,e),n.layers[t.id].updatePaintTransitions({},{transition:!1})}this.layerFamilies=c(this.layers)},"load tile":function(t,e){var r=t.type||"vector";this.workerSources[r].loadTile(t,e)},"reload tile":function(t,e){var r=t.type||"vector";this.workerSources[r].reloadTile(t,e)},"abort tile":function(t){var e=t.type||"vector";this.workerSources[e].abortTile(t)},"remove tile":function(t){var e=t.type||"vector";this.workerSources[e].removeTile(t)},"redo placement":function(t,e){var r=t.type||"vector";this.workerSources[r].redoPlacement(t,e)},"load worker source":function(t,e){try{this.self.importScripts(t.url),e()}catch(t){e(t)}}})},{"../style/style_layer":353,"../util/actor":396,"../util/util":414,"./geojson_worker_source":331,"./vector_tile_worker_source":343}],346:[function(t,e,r){"use strict";var n=t("../data/feature_index"),i=t("../symbol/collision_tile"),a=t("../data/bucket"),o=t("../symbol/collision_box"),s=t("../util/dictionary_coder"),l=t("../util/util"),c=t("../symbol/symbol_instances"),u=t("../symbol/symbol_quads");function f(t){this.coord=t.coord,this.uid=t.uid,this.zoom=t.zoom,this.tileSize=t.tileSize,this.source=t.source,this.overscaling=t.overscaling,this.angle=t.angle,this.pitch=t.pitch,this.showCollisionBoxes=t.showCollisionBoxes}function h(t){return!t.isEmpty()}function d(t){return t.serialize()}function p(t){var e=[];for(var r in t)t[r].getTransferables(e);return e}function m(t){return t.id}e.exports=f,f.prototype.parse=function(t,e,r,f,v){this.status="parsing",this.data=t,this.collisionBoxArray=new o,this.symbolInstancesArray=new c,this.symbolQuadsArray=new u;var g,y,b,x,_=new i(this.angle,this.pitch,this.collisionBoxArray),w=new n(this.coord,this.overscaling,_,t.layers),M=new s(t.layers?Object.keys(t.layers).sort():["_geojsonTileLayer"]),k=this,A={},T={},E=0;for(var S in e)(y=e[S][0]).source===this.source&&(y.ref||y.minzoom&&this.zoom<y.minzoom||y.maxzoom&&this.zoom>=y.maxzoom||y.layout&&"none"===y.layout.visibility||t.layers&&!t.layers[y.sourceLayer]||((x=a.create({layer:y,index:E++,childLayers:e[S],zoom:this.zoom,overscaling:this.overscaling,showCollisionBoxes:this.showCollisionBoxes,collisionBoxArray:this.collisionBoxArray,symbolQuadsArray:this.symbolQuadsArray,symbolInstancesArray:this.symbolInstancesArray,sourceLayerIndex:M.encode(y.sourceLayer||"_geojsonTileLayer")})).createFilter(),A[y.id]=x,t.layers&&(T[b=y.sourceLayer]=T[b]||{},T[b][y.id]=x)));if(t.layers)for(b in T)1===y.version&&l.warnOnce('Vector tile source "'+this.source+'" layer "'+b+'" does not use vector tile spec v2 and therefore may have some rendering errors.'),(y=t.layers[b])&&L(y,T[b]);else L(t,A);function L(t,e){for(var r=0;r<t.length;r++){var n=t.feature(r);for(var i in n.index=r,e)e[i].filter(n)&&e[i].features.push(n)}}var C=[],P=this.symbolBuckets=[],z=[];for(var O in w.bucketLayerIDs={},A)0!==(x=A[O]).features.length&&(w.bucketLayerIDs[x.index]=x.childLayers.map(m),C.push(x),"symbol"===x.type?P.push(x):z.push(x));var D={},I={},R=0;if(P.length>0){for(g=P.length-1;g>=0;g--)P[g].updateIcons(D),P[g].updateFont(I);for(var N in I)I[N]=Object.keys(I[N]).map(Number);D=Object.keys(D),r.send("get glyphs",{uid:this.uid,stacks:I},function(t,e){I=e,F(t)}),D.length?r.send("get icons",{icons:D},function(t,e){D=e,F(t)}):F()}for(g=z.length-1;g>=0;g--)j(this,z[g]);if(0===P.length)return B();function F(t){if(t)return v(t);if(2===++R){for(var e=P.length-1;e>=0;e--)j(k,P[e]);B()}}function j(t,e){if(e.populateArrays(_,I,D),"symbol"!==e.type)for(var r=0;r<e.features.length;r++){var n=e.features[r];w.insert(n,n.index,e.sourceLayerIndex,e.index)}e.features=null}function B(){k.status="done",k.redoPlacementAfterDone&&(k.redoPlacement(k.angle,k.pitch,null),k.redoPlacementAfterDone=!1);var t=w.serialize(),e=_.serialize(),r=k.collisionBoxArray.serialize(),n=k.symbolInstancesArray.serialize(),i=k.symbolQuadsArray.serialize(),a=[f].concat(t.transferables).concat(e.transferables),o=C.filter(h);v(null,{buckets:o.map(d),featureIndex:t.data,collisionTile:e.data,collisionBoxArray:r,symbolInstancesArray:n,symbolQuadsArray:i,rawTileData:f},p(o).concat(a))}},f.prototype.redoPlacement=function(t,e,r){if("done"!==this.status)return this.redoPlacementAfterDone=!0,this.angle=t,{};for(var n=new i(t,e,this.collisionBoxArray),a=this.symbolBuckets,o=a.length-1;o>=0;o--)a[o].placeFeatures(n,r);var s=n.serialize(),l=a.filter(h);return{result:{buckets:l.map(d),collisionTile:s.data},transferables:p(l).concat(s.transferables)}}},{"../data/bucket":301,"../data/feature_index":308,"../symbol/collision_box":366,"../symbol/collision_tile":368,"../symbol/symbol_instances":377,"../symbol/symbol_quads":378,"../util/dictionary_coder":404,"../util/util":414}],347:[function(t,e,r){"use strict";function n(){this.n=0,this.times=[]}e.exports=n,n.prototype.stopped=function(){return this.times=this.times.filter(function(t){return t.time>=(new Date).getTime()}),!this.times.length},n.prototype.set=function(t){return this.times.push({id:this.n,time:t+(new Date).getTime()}),this.n++},n.prototype.cancel=function(t){this.times=this.times.filter(function(e){return e.id!==t})}},{}],348:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("../util/ajax"),a=t("../util/browser"),o=t("../util/mapbox").normalizeSpriteURL;function s(t){this.base=t,this.retina=a.devicePixelRatio>1;var e=this.retina?"@2x":"";i.getJSON(o(t,e,".json"),function(t,e){t?this.fire("error",{error:t}):(this.data=e,this.img&&this.fire("load"))}.bind(this)),i.getImage(o(t,e,".png"),function(t,e){if(t)this.fire("error",{error:t});else{for(var r=e.getData(),n=e.data=new Uint8Array(r.length),i=0;i<r.length;i+=4){var a=r[i+3]/255;n[i+0]=r[i+0]*a,n[i+1]=r[i+1]*a,n[i+2]=r[i+2]*a,n[i+3]=r[i+3]}this.img=e,this.data&&this.fire("load")}}.bind(this))}function l(){}e.exports=s,s.prototype=Object.create(n),s.prototype.toJSON=function(){return this.base},s.prototype.loaded=function(){return!(!this.data||!this.img)},s.prototype.resize=function(){if(a.devicePixelRatio>1!==this.retina){var t=new s(this.base);t.on("load",function(){this.img=t.img,this.data=t.data,this.retina=t.retina}.bind(this))}},l.prototype={x:0,y:0,width:0,height:0,pixelRatio:1,sdf:!1},s.prototype.getSpritePosition=function(t){if(!this.loaded())return new l;var e=this.data&&this.data[t];return e&&this.img?e:new l}},{"../util/ajax":397,"../util/browser":398,"../util/evented":406,"../util/mapbox":411}],349:[function(t,e,r){"use strict";var n=t("csscolorparser").parseCSSColor,i=t("../util/util"),a=t("./style_function"),o={};e.exports=function t(e){if(a.isFunctionDefinition(e))return i.extend({},e,{stops:e.stops.map(function(e){return[e[0],t(e[1])]})});if("string"==typeof e){if(!o[e]){var r=n(e);if(!r)throw new Error("Invalid color "+e);o[e]=[r[0]/255*r[3],r[1]/255*r[3],r[2]/255*r[3],r[3]]}return o[e]}throw new Error("Invalid color "+e)}},{"../util/util":414,"./style_function":352,csscolorparser:114}],350:[function(t,e,r){"use strict";var n=t("../util/evented"),i=t("./style_layer"),a=t("./image_sprite"),o=t("../symbol/glyph_source"),s=t("../symbol/sprite_atlas"),l=t("../render/line_atlas"),c=t("../util/util"),u=t("../util/ajax"),f=t("../util/mapbox").normalizeStyleURL,h=t("../util/browser"),d=t("../util/dispatcher"),p=t("./animation_loop"),m=t("./validate_style"),v=t("../source/source"),g=t("../source/query_features"),y=t("../source/source_cache"),b=t("./style_spec"),x=t("./style_function");function _(t,e,r){this.animationLoop=e||new p,this.dispatcher=new d(r||1,this),this.spriteAtlas=new s(1024,1024),this.lineAtlas=new 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t;this._groups=[];for(var e=0;e<this._order.length;++e){var r=this._layers[this._order[e]];t&&r.source===t.source||((t=[]).source=r.source,this._groups.push(t)),t.push(r)}},_updateWorkerLayers:function(t){this.dispatcher.broadcast(t?"update layers":"set layers",this._serializeLayers(t))},_serializeLayers:function(t){t=t||this._order;for(var e=[],r={includeRefProperties:!0},n=0;n<t.length;n++)e.push(this._layers[t[n]].serialize(r));return e},_applyClasses:function(t,e){if(this._loaded){t=t||[],e=e||{transition:!0};var r=this.stylesheet.transition||{},n=this._updates.allPaintProps?this._layers:this._updates.paintProps;for(var i in n){var a=this._layers[i],o=this._updates.paintProps[i];if(this._updates.allPaintProps||o.all)a.updatePaintTransitions(t,e,r,this.animationLoop);else for(var s in o)this._layers[i].updatePaintTransition(s,t,e,r,this.animationLoop)}}},_recalculate:function(t){for(var e in this.sources)this.sources[e].used=!1;for(var r in this._updateZoomHistory(t),this.rasterFadeDuration=300,this._layers){var n=this._layers[r];n.recalculate(t,this.zoomHistory),!n.isHidden(t)&&n.source&&(this.sources[n.source].used=!0)}Math.floor(this.z)!==Math.floor(t)&&this.animationLoop.set(300),this.z=t,this.fire("zoom")},_updateZoomHistory:function(t){var e=this.zoomHistory;void 0===e.lastIntegerZoom&&(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=0,e.lastZoom=t),Math.floor(e.lastZoom)<Math.floor(t)?(e.lastIntegerZoom=Math.floor(t),e.lastIntegerZoomTime=Date.now()):Math.floor(e.lastZoom)>Math.floor(t)&&(e.lastIntegerZoom=Math.floor(t+1),e.lastIntegerZoomTime=Date.now()),e.lastZoom=t},_checkLoaded:function(){if(!this._loaded)throw new Error("Style is not done loading")},update:function(t,e){if(!this._updates.changed)return this;if(this._updates.allLayers)this._groupLayers(),this._updateWorkerLayers();else{var r=Object.keys(this._updates.layers);r.length&&this._updateWorkerLayers(r)}var n,i=Object.keys(this._updates.sources);for(n=0;n<i.length;n++)this._reloadSource(i[n]);for(n=0;n<this._updates.events.length;n++){var a=this._updates.events[n];this.fire(a[0],a[1])}return this._applyClasses(t,e),this._updates.changed&&this.fire("change"),this._resetUpdates(),this},_resetUpdates:function(){this._updates={events:[],layers:{},sources:{},paintProps:{}}},addSource:function(t,e){if(this._checkLoaded(),void 0!==this.sources[t])throw new Error("There is already a source with this ID");if(!e.type)throw new Error("The type property must be defined, but the only the following properties were given: "+Object.keys(e)+".");return["vector","raster","geojson","video","image"].indexOf(e.type)>=0&&this._handleErrors(m.source,"sources."+t,e)?this:(e=new y(t,e,this.dispatcher),this.sources[t]=e,e.style=this,e.on("load",this._forwardSourceEvent).on("error",this._forwardSourceEvent).on("change",this._forwardSourceEvent).on("tile.add",this._forwardTileEvent).on("tile.load",this._forwardTileEvent).on("tile.error",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.add",{source:e}]),this._updates.changed=!0,this)},removeSource:function(t){if(this._checkLoaded(),void 0===this.sources[t])throw new Error("There is no source with this ID");var e=this.sources[t];return delete this.sources[t],delete this._updates.sources[t],e.off("load",this._forwardSourceEvent).off("error",this._forwardSourceEvent).off("change",this._forwardSourceEvent).off("tile.add",this._forwardTileEvent).off("tile.load",this._forwardTileEvent).off("tile.error",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent),this._updates.events.push(["source.remove",{source:e}]),this._updates.changed=!0,this},getSource:function(t){return this.sources[t]&&this.sources[t].getSource()},addLayer:function(t,e){if(this._checkLoaded(),!(t instanceof i)){if(this._handleErrors(m.layer,"layers."+t.id,t,!1,{arrayIndex:-1}))return this;var r=t.ref&&this.getLayer(t.ref);t=i.create(t,r)}return this._validateLayer(t),t.on("error",this._forwardLayerEvent),this._layers[t.id]=t,this._order.splice(e?this._order.indexOf(e):1/0,0,t.id),this._updates.allLayers=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.events.push(["layer.add",{layer:t}]),this.updateClasses(t.id)},removeLayer:function(t){this._checkLoaded();var e=this._layers[t];if(void 0===e)throw new Error("There is no layer with this ID");for(var r in this._layers)this._layers[r].ref===t&&this.removeLayer(r);return e.off("error",this._forwardLayerEvent),delete this._layers[t],delete this._updates.layers[t],delete this._updates.paintProps[t],this._order.splice(this._order.indexOf(t),1),this._updates.allLayers=!0,this._updates.events.push(["layer.remove",{layer:e}]),this._updates.changed=!0,this},getLayer:function(t){return this._layers[t]},getReferentLayer:function(t){var e=this.getLayer(t);return e.ref&&(e=this.getLayer(e.ref)),e},setLayerZoomRange:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return n.minzoom===e&&n.maxzoom===r?this:(null!=e&&(n.minzoom=e),null!=r&&(n.maxzoom=r),this._updateLayer(n))},setFilter:function(t,e){this._checkLoaded();var r=this.getReferentLayer(t);return null!==e&&this._handleErrors(m.filter,"layers."+r.id+".filter",e)?this:c.deepEqual(r.filter,e)?this:(r.filter=c.clone(e),this._updateLayer(r))},getFilter:function(t){return this.getReferentLayer(t).filter},setLayoutProperty:function(t,e,r){this._checkLoaded();var n=this.getReferentLayer(t);return c.deepEqual(n.getLayoutProperty(e),r)?this:(n.setLayoutProperty(e,r),this._updateLayer(n))},getLayoutProperty:function(t,e){return this.getReferentLayer(t).getLayoutProperty(e)},setPaintProperty:function(t,e,r,n){this._checkLoaded();var i=this.getLayer(t);if(c.deepEqual(i.getPaintProperty(e,n),r))return this;var a=i.isPaintValueFeatureConstant(e);return i.setPaintProperty(e,r,n),!(r&&x.isFunctionDefinition(r)&&"$zoom"!==r.property&&void 0!==r.property)&&a||(this._updates.layers[t]=!0,i.source&&(this._updates.sources[i.source]=!0)),this.updateClasses(t,e)},getPaintProperty:function(t,e,r){return this.getLayer(t).getPaintProperty(e,r)},updateClasses:function(t,e){if(this._updates.changed=!0,t){var r=this._updates.paintProps;r[t]||(r[t]={}),r[t][e||"all"]=!0}else this._updates.allPaintProps=!0;return this},serialize:function(){return c.filterObject({version:this.stylesheet.version,name:this.stylesheet.name,metadata:this.stylesheet.metadata,center:this.stylesheet.center,zoom:this.stylesheet.zoom,bearing:this.stylesheet.bearing,pitch:this.stylesheet.pitch,sprite:this.stylesheet.sprite,glyphs:this.stylesheet.glyphs,transition:this.stylesheet.transition,sources:c.mapObject(this.sources,function(t){return t.serialize()}),layers:this._order.map(function(t){return this._layers[t].serialize()},this)},function(t){return void 0!==t})},_updateLayer:function(t){return this._updates.layers[t.id]=!0,t.source&&(this._updates.sources[t.source]=!0),this._updates.changed=!0,this},_flattenRenderedFeatures:function(t){for(var e=[],r=this._order.length-1;r>=0;r--)for(var n=this._order[r],i=0;i<t.length;i++){var a=t[i][n];if(a)for(var o=0;o<a.length;o++)e.push(a[o])}return e},queryRenderedFeatures:function(t,e,r,n){e&&e.filter&&this._handleErrors(m.filter,"queryRenderedFeatures.filter",e.filter,!0);var i={};if(e&&e.layers)for(var a=0;a<e.layers.length;a++){var o=e.layers[a];i[this._layers[o].source]=!0}var s=[];for(var l in this.sources)if(!e.layers||i[l]){var c=this.sources[l],u=g.rendered(c,this._layers,t,e,r,n);s.push(u)}return this._flattenRenderedFeatures(s)},querySourceFeatures:function(t,e){e&&e.filter&&this._handleErrors(m.filter,"querySourceFeatures.filter",e.filter,!0);var r=this.sources[t];return r?g.source(r,e):[]},addSourceType:function(t,e,r){return v.getType(t)?r(new Error('A source type called "'+t+'" already 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r=this.sprite;r.loaded()?e(null,{sprite:r.data,retina:r.retina}):r.on("load",function(){e(null,{sprite:r.data,retina:r.retina})})},"get icons":function(t,e){var r=this.sprite,n=this.spriteAtlas;r.loaded()?(n.setSprite(r),n.addIcons(t.icons,e)):r.on("load",function(){n.setSprite(r),n.addIcons(t.icons,e)})},"get glyphs":function(t,e){var r=t.stacks,n=Object.keys(r).length,i={};for(var a in r)this.glyphSource.getSimpleGlyphs(a,r[a],t.uid,o);function o(t,r,a){t&&console.error(t),i[a]=r,0===--n&&e(null,i)}}})},{"../render/line_atlas":326,"../source/query_features":336,"../source/source":338,"../source/source_cache":339,"../symbol/glyph_source":371,"../symbol/sprite_atlas":376,"../util/ajax":397,"../util/browser":398,"../util/dispatcher":405,"../util/evented":406,"../util/mapbox":411,"../util/util":414,"./animation_loop":347,"./image_sprite":348,"./style_function":352,"./style_layer":353,"./style_spec":360,"./validate_style":362}],351:[function(t,e,r){"use strict";var n=t("./style_function"),i=t("./parse_color"),a=t("../util/util");e.exports=function(t,e){this.value=a.clone(e),this.isFunction=n.isFunctionDefinition(e),this.json=JSON.stringify(this.value);var r="color"===t.type&&this.value?i(this.value):e;this.calculate=n[t.function||"piecewise-constant"](r),this.isFeatureConstant=this.calculate.isFeatureConstant,this.isZoomConstant=this.calculate.isZoomConstant,"piecewise-constant"===t.function&&t.transition&&(this.calculate=(o=this.calculate,function(t,e){var r,n,i,a=t.zoom,s=t.zoomHistory,l=t.duration,c=a%1,u=Math.min((Date.now()-s.lastIntegerZoomTime)/l,1),f=1;return a>s.lastIntegerZoom?(r=c+(1-c)*u,f*=2,n=o({zoom:a-1},e),i=o({zoom:a},e)):(r=1-(1-u)*c,i=o({zoom:a},e),n=o({zoom:a+1},e),f/=2),void 0===n||void 0===i?void 0:{from:n,fromScale:f,to:i,toScale:1,t:r}}));var o;if(!this.isFeatureConstant&&!this.isZoomConstant){this.stopZoomLevels=[];for(var s=[],l=this.value.stops,c=0;c<this.value.stops.length;c++){var u=l[c][0].zoom;this.stopZoomLevels.indexOf(u)<0&&(this.stopZoomLevels.push(u),s.push([u,s.length]))}this.calculateInterpolationT=n.interpolated({stops:s,base:e.base})}}},{"../util/util":414,"./parse_color":349,"./style_function":352}],352:[function(t,e,r){"use strict";var n=t("mapbox-gl-function");r.interpolated=function(t){var e=n.interpolated(t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r["piecewise-constant"]=function(t){var e=n["piecewise-constant"](t),r=function(t,r){return e(t&&t.zoom,r||{})};return r.isFeatureConstant=e.isFeatureConstant,r.isZoomConstant=e.isZoomConstant,r},r.isFunctionDefinition=n.isFunctionDefinition},{"mapbox-gl-function":274}],353:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("./style_transition"),a=t("./style_declaration"),o=t("./style_spec"),s=t("./validate_style"),l=t("./parse_color"),c=t("../util/evented");e.exports=u;function u(t,e){this.set(t,e)}function 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t[i])this.setPaintProperty(r,t[i][r],s)}}if(this.ref)this._layoutDeclarations=e._layoutDeclarations;else for(n in t.layout)this.setLayoutProperty(n,t.layout[n]);for(r in this._paintSpecifications)this.paint[r]=this.getPaintValue(r);for(n in this._layoutSpecifications)this._updateLayoutValue(n)},setLayoutProperty:function(t,e){if(null==e)delete this._layoutDeclarations[t];else{var r="layers."+this.id+".layout."+t;if(this._handleErrors(s.layoutProperty,r,t,e))return;this._layoutDeclarations[t]=new a(this._layoutSpecifications[t],e)}this._updateLayoutValue(t)},getLayoutProperty:function(t){return this._layoutDeclarations[t]&&this._layoutDeclarations[t].value},getLayoutValue:function(t,e,r){var n=this._layoutSpecifications[t],i=this._layoutDeclarations[t];return i?i.calculate(e,r):n.default},setPaintProperty:function(t,e,r){var i="layers."+this.id+(r?'["paint.'+r+'"].':".paint.")+t;if(n.endsWith(t,"-transition"))if(this._paintTransitionOptions[r||""]||(this._paintTransitionOptions[r||""]={}),null===e||void 0===e)delete this._paintTransitionOptions[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintTransitionOptions[r||""][t]=e}else if(this._paintDeclarations[r||""]||(this._paintDeclarations[r||""]={}),null===e||void 0===e)delete this._paintDeclarations[r||""][t];else{if(this._handleErrors(s.paintProperty,i,t,e))return;this._paintDeclarations[r||""][t]=new a(this._paintSpecifications[t],e)}},getPaintProperty:function(t,e){return e=e||"",n.endsWith(t,"-transition")?this._paintTransitionOptions[e]&&this._paintTransitionOptions[e][t]:this._paintDeclarations[e]&&this._paintDeclarations[e][t]&&this._paintDeclarations[e][t].value},getPaintValue:function(t,e,r){var n=this._paintSpecifications[t],i=this._paintTransitions[t];return i?i.calculate(e,r):"color"===n.type&&n.default?l(n.default):n.default},getPaintValueStopZoomLevels:function(t){var e=this._paintTransitions[t];return e?e.declaration.stopZoomLevels:[]},getPaintInterpolationT:function(t,e){return this._paintTransitions[t].declaration.calculateInterpolationT({zoom:e})},isPaintValueFeatureConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isFeatureConstant},isLayoutValueFeatureConstant:function(t){var e=this._layoutDeclarations[t];return!e||e.isFeatureConstant},isPaintValueZoomConstant:function(t){var e=this._paintTransitions[t];return!e||e.declaration.isZoomConstant},isHidden:function(t){return!!(this.minzoom&&t<this.minzoom)||(!!(this.maxzoom&&t>=this.maxzoom)||("none"===this.layout.visibility||0===this.paint[this.type+"-opacity"]))},updatePaintTransitions:function(t,e,r,i){for(var a,o=n.extend({},this._paintDeclarations[""]),s=0;s<t.length;s++)n.extend(o,this._paintDeclarations[t[s]]);for(a in o)this._applyPaintDeclaration(a,o[a],e,r,i);for(a in this._paintTransitions)a in o||this._applyPaintDeclaration(a,null,e,r,i)},updatePaintTransition:function(t,e,r,n,i){for(var a=this._paintDeclarations[""][t],o=0;o<e.length;o++){var s=this._paintDeclarations[e[o]];s&&s[t]&&(a=s[t])}this._applyPaintDeclaration(t,a,r,n,i)},recalculate:function(t,e){for(var r in this._paintTransitions)this.paint[r]=this.getPaintValue(r,{zoom:t,zoomHistory:e});for(var n in this._layoutFunctions)this.layout[n]=this.getLayoutValue(n,{zoom:t,zoomHistory:e})},serialize:function(t){var e={id:this.id,ref:this.ref,metadata:this.metadata,minzoom:this.minzoom,maxzoom:this.maxzoom};for(var r in this._paintDeclarations){e[""===r?"paint":"paint."+r]=n.mapObject(this._paintDeclarations[r],f)}return(!this.ref||t&&t.includeRefProperties)&&n.extend(e,{type:this.type,source:this.source,"source-layer":this.sourceLayer,filter:this.filter,layout:n.mapObject(this._layoutDeclarations,f)}),n.filterObject(e,function(t,e){return void 0!==t&&!("layout"===e&&!Object.keys(t).length)})},_applyPaintDeclaration:function(t,e,r,o,s){var l=r.transition?this._paintTransitions[t]:void 0,c=this._paintSpecifications[t];if(null!==e&&void 0!==e||(e=new a(c,c.default)),!l||l.declaration.json!==e.json){var u=n.extend({duration:300,delay:0},o,this.getPaintProperty(t+"-transition")),f=this._paintTransitions[t]=new i(c,e,l,u);f.instant()||(f.loopID=s.set(f.endTime-Date.now())),l&&s.cancel(l.loopID)}},_updateLayoutValue:function(t){var e=this._layoutDeclarations[t];e&&e.isFunction?this._layoutFunctions[t]=!0:(delete this._layoutFunctions[t],this.layout[t]=this.getLayoutValue(t))},_handleErrors:function(t,e,r,n){return s.emitErrors(this,t.call(s,{key:e,layerType:this.type,objectKey:r,value:n,styleSpec:o,style:{glyphs:!0,sprite:!0}}))}})},{"../util/evented":406,"../util/util":414,"./parse_color":349,"./style_declaration":351,"./style_layer/background_style_layer":354,"./style_layer/circle_style_layer":355,"./style_layer/fill_style_layer":356,"./style_layer/line_style_layer":357,"./style_layer/raster_style_layer":358,"./style_layer/symbol_style_layer":359,"./style_spec":360,"./style_transition":361,"./validate_style":362}],354:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],355:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],356:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValue.call(this,"fill-color",e,r):i.prototype.getPaintValue.call(this,t,e,r)},getPaintValueStopZoomLevels:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintValueStopZoomLevels.call(this,"fill-color"):i.prototype.getPaintValueStopZoomLevels.call(this,arguments)},getPaintInterpolationT:function(t,e){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.getPaintInterpolationT.call(this,"fill-color",e):i.prototype.getPaintInterpolationT.call(this,t,e)},isPaintValueFeatureConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueFeatureConstant.call(this,"fill-color"):i.prototype.isPaintValueFeatureConstant.call(this,t)},isPaintValueZoomConstant:function(t){return"fill-outline-color"===t&&void 0===this.getPaintProperty("fill-outline-color")?i.prototype.isPaintValueZoomConstant.call(this,"fill-color"):i.prototype.isPaintValueZoomConstant.call(this,t)}}),e.exports=a},{"../../util/util":414,"../style_layer":353}],357:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{getPaintValue:function(t,e,r){var n=i.prototype.getPaintValue.apply(this,arguments);if(n&&"line-dasharray"===t){var a=Math.floor(e.zoom);this._flooredZoom!==a&&(this._flooredZoom=a,this._flooredLineWidth=this.getPaintValue("line-width",e,r)),n.fromScale*=this._flooredLineWidth,n.toScale*=this._flooredLineWidth}return n}})},{"../../util/util":414,"../style_layer":353}],358:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{})},{"../../util/util":414,"../style_layer":353}],359:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../style_layer");function a(){i.apply(this,arguments)}e.exports=a,a.prototype=n.inherit(i,{isHidden:function(){if(i.prototype.isHidden.apply(this,arguments))return!0;var t=0===this.paint["text-opacity"]||!this.layout["text-field"],e=0===this.paint["icon-opacity"]||!this.layout["icon-image"];return!(!t||!e)},getLayoutValue:function(t,e,r){return("text-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("text-rotation-alignment"))&&("icon-rotation-alignment"!==t||"line"!==this.getLayoutValue("symbol-placement",e,r)||this.getLayoutProperty("icon-rotation-alignment"))?"text-pitch-alignment"!==t||this.getLayoutProperty("text-pitch-alignment")?i.prototype.getLayoutValue.apply(this,arguments):this.getLayoutValue("text-rotation-alignment"):"map"}})},{"../../util/util":414,"../style_layer":353}],360:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/reference/latest.min")},{"mapbox-gl-style-spec/reference/latest.min":297}],361:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate");function a(t,e,r,a){this.declaration=e,this.startTime=this.endTime=(new Date).getTime(),"piecewise-constant"===t.function&&t.transition?this.interp=o:this.interp=i[t.type],this.oldTransition=r,this.duration=a.duration||0,this.delay=a.delay||0,this.instant()||(this.endTime=this.startTime+this.duration+this.delay,this.ease=n.easeCubicInOut),r&&r.endTime<=this.startTime&&delete r.oldTransition}function o(t,e,r){return void 0===(t&&t.to)||void 0===(e&&e.to)?void 0:{from:t.to,fromScale:t.toScale,to:e.to,toScale:e.toScale,t:r}}e.exports=a,a.prototype.instant=function(){return!this.oldTransition||!this.interp||0===this.duration&&0===this.delay},a.prototype.calculate=function(t,e){var r=this.declaration.calculate(n.extend({},t,{duration:this.duration}),e);if(this.instant())return r;var i=t.time||Date.now();if(i<this.endTime){var a=this.oldTransition.calculate(n.extend({},t,{time:this.startTime}),e),o=this.ease((i-this.startTime-this.delay)/this.duration);r=this.interp(a,r,o)}return r}},{"../util/interpolate":408,"../util/util":414}],362:[function(t,e,r){"use strict";e.exports=t("mapbox-gl-style-spec/lib/validate_style.min"),e.exports.emitErrors=function(t,e){if(e&&e.length){for(var r=0;r<e.length;r++)t.fire("error",{error:new Error(e[r].message)});return!0}return!1},e.exports.throwErrors=function(t,e){if(e)for(var r=0;r<e.length;r++)throw new Error(e[r].message)}},{"mapbox-gl-style-spec/lib/validate_style.min":296}],363:[function(t,e,r){"use strict";var n=t("point-geometry");function i(t,e,r,n){this.x=t,this.y=e,this.angle=r,void 0!==n&&(this.segment=n)}e.exports=i,i.prototype=Object.create(n.prototype),i.prototype.clone=function(){return new i(this.x,this.y,this.angle,this.segment)}},{"point-geometry":458}],364:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){if(void 0===e.segment)return!0;var a=e,o=e.segment+1,s=0;for(;s>-r/2;){if(--o<0)return!1;s-=t[o].dist(a),a=t[o]}s+=t[o].dist(t[o+1]),o++;var l=[],c=0;for(;s<r/2;){var u=t[o-1],f=t[o],h=t[o+1];if(!h)return!1;var d=u.angleTo(f)-f.angleTo(h);for(d=Math.abs((d+3*Math.PI)%(2*Math.PI)-Math.PI),l.push({distance:s,angleDelta:d}),c+=d;s-l[0].distance>n;)c-=l.shift().angleDelta;if(c>i)return!1;o++,s+=f.dist(h)}return!0}},{}],365:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports=function(t,e,r,i,a){for(var o=[],s=0;s<t.length;s++)for(var l,c=t[s],u=0;u<c.length-1;u++){var f=c[u],h=c[u+1];f.x<e&&h.x<e||(f.x<e?f=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round():h.x<e&&(h=new n(e,f.y+(h.y-f.y)*((e-f.x)/(h.x-f.x)))._round()),f.y<r&&h.y<r||(f.y<r?f=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round():h.y<r&&(h=new n(f.x+(h.x-f.x)*((r-f.y)/(h.y-f.y)),r)._round()),f.x>=i&&h.x>=i||(f.x>=i?f=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round():h.x>=i&&(h=new n(i,f.y+(h.y-f.y)*((i-f.x)/(h.x-f.x)))._round()),f.y>=a&&h.y>=a||(f.y>=a?f=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round():h.y>=a&&(h=new n(f.x+(h.x-f.x)*((a-f.y)/(h.y-f.y)),a)._round()),l&&f.equals(l[l.length-1])||(l=[f],o.push(l)),l.push(h)))))}return o}},{"point-geometry":458}],366:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int16",name:"x1"},{type:"Int16",name:"y1"},{type:"Int16",name:"x2"},{type:"Int16",name:"y2"},{type:"Float32",name:"maxScale"},{type:"Uint32",name:"featureIndex"},{type:"Uint16",name:"sourceLayerIndex"},{type:"Uint16",name:"bucketIndex"},{type:"Int16",name:"bbox0"},{type:"Int16",name:"bbox1"},{type:"Int16",name:"bbox2"},{type:"Int16",name:"bbox3"},{type:"Float32",name:"placementScale"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],367:[function(t,e,r){"use strict";function n(t,e,r,n,i,a,o,s,l,c,u){var f=o.top*s-l,h=o.bottom*s+l,d=o.left*s-l,p=o.right*s+l;if(this.boxStartIndex=t.length,c){var m=h-f,v=p-d;if(m>0)if(m=Math.max(10*s,m),u){var g=e[r.segment+1].sub(e[r.segment])._unit()._mult(v),y=[r.sub(g),r.add(g)];this._addLineCollisionBoxes(t,y,r,0,v,m,n,i,a)}else this._addLineCollisionBoxes(t,e,r,r.segment,v,m,n,i,a)}else t.emplaceBack(r.x,r.y,d,f,p,h,1/0,n,i,a,0,0,0,0,0);this.boxEndIndex=t.length}e.exports=n,n.prototype._addLineCollisionBoxes=function(t,e,r,n,i,a,o,s,l){var c=a/2,u=Math.floor(i/c),f=-a/2,h=this.boxes,d=r,p=n+1,m=f;do{if(--p<0)return h;m-=e[p].dist(d),d=e[p]}while(m>-i/2);for(var v=e[p].dist(e[p+1]),g=0;g<u;g++){for(var y=-i/2+g*c;m+v<y;){if(m+=v,++p+1>=e.length)return h;v=e[p].dist(e[p+1])}var b=y-m,x=e[p],_=e[p+1].sub(x)._unit()._mult(b)._add(x)._round(),w=i/2/Math.max(Math.abs(y-f)-c/2,0);t.emplaceBack(_.x,_.y,-a/2,-a/2,a/2,a/2,w,o,s,l,0,0,0,0,0)}return h}},{}],368:[function(t,e,r){"use strict";var n=t("point-geometry"),i=t("../data/bucket").EXTENT,a=t("grid-index");function o(t,e,r){if("object"==typeof t){var n=t;r=e,t=n.angle,e=n.pitch,this.grid=new a(n.grid),this.ignoredGrid=new a(n.ignoredGrid)}else this.grid=new a(i,12,6),this.ignoredGrid=new a(i,12,0);this.angle=t,this.pitch=e;var o=Math.sin(t),s=Math.cos(t);if(this.rotationMatrix=[s,-o,o,s],this.reverseRotationMatrix=[s,o,-o,s],this.yStretch=1/Math.cos(e/180*Math.PI),this.yStretch=Math.pow(this.yStretch,1.3),this.collisionBoxArray=r,0===r.length){r.emplaceBack();r.emplaceBack(0,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(i,0,0,-32767,0,32767,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,0,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0),r.emplaceBack(0,i,-32767,0,32767,0,32767,0,0,0,0,0,0,0,0,0)}this.tempCollisionBox=r.get(0),this.edges=[r.get(1),r.get(2),r.get(3),r.get(4)]}e.exports=o,o.prototype.serialize=function(){var t={angle:this.angle,pitch:this.pitch,grid:this.grid.toArrayBuffer(),ignoredGrid:this.ignoredGrid.toArrayBuffer()};return{data:t,transferables:[t.grid,t.ignoredGrid]}},o.prototype.minScale=.25,o.prototype.maxScale=2,o.prototype.placeCollisionFeature=function(t,e,r){for(var i=this.collisionBoxArray,a=this.minScale,o=this.rotationMatrix,s=this.yStretch,l=t.boxStartIndex;l<t.boxEndIndex;l++){var c=i.get(l),u=c.anchorPoint._matMult(o),f=u.x,h=u.y,d=f+c.x1,p=h+c.y1*s,m=f+c.x2,v=h+c.y2*s;if(c.bbox0=d,c.bbox1=p,c.bbox2=m,c.bbox3=v,!e)for(var g=this.grid.query(d,p,m,v),y=0;y<g.length;y++){var b=i.get(g[y]),x=b.anchorPoint._matMult(o);if((a=this.getPlacementScale(a,u,c,x,b))>=this.maxScale)return a}if(r){var _;if(this.angle){var w=this.reverseRotationMatrix,M=new n(c.x1,c.y1).matMult(w),k=new n(c.x2,c.y1).matMult(w),A=new n(c.x1,c.y2).matMult(w),T=new n(c.x2,c.y2).matMult(w);(_=this.tempCollisionBox).anchorPointX=c.anchorPoint.x,_.anchorPointY=c.anchorPoint.y,_.x1=Math.min(M.x,k.x,A.x,T.x),_.y1=Math.min(M.y,k.x,A.x,T.x),_.x2=Math.max(M.x,k.x,A.x,T.x),_.y2=Math.max(M.y,k.x,A.x,T.x),_.maxScale=c.maxScale}else _=c;for(var E=0;E<this.edges.length;E++){var S=this.edges[E];if((a=this.getPlacementScale(a,c.anchorPoint,_,S.anchorPoint,S))>=this.maxScale)return a}}}return a},o.prototype.queryRenderedSymbols=function(t,e,r,i,a){var o={},s=[],l=this.collisionBoxArray,c=this.rotationMatrix,u=new n(t,e)._matMult(c),f=this.tempCollisionBox;f.anchorX=u.x,f.anchorY=u.y,f.x1=0,f.y1=0,f.x2=r-t,f.y2=i-e,f.maxScale=a,a=f.maxScale;for(var h=[u.x+f.x1/a,u.y+f.y1/a*this.yStretch,u.x+f.x2/a,u.y+f.y2/a*this.yStretch],d=this.grid.query(h[0],h[1],h[2],h[3]),p=this.ignoredGrid.query(h[0],h[1],h[2],h[3]),m=0;m<p.length;m++)d.push(p[m]);for(var v=0;v<d.length;v++){var g=l.get(d[v]),y=g.sourceLayerIndex,b=g.featureIndex;if(void 0===o[y]&&(o[y]={}),!o[y][b]){var x=g.anchorPoint.matMult(c);this.getPlacementScale(this.minScale,u,f,x,g)>=a&&(o[y][b]=!0,s.push(d[v]))}}return s},o.prototype.getPlacementScale=function(t,e,r,n,i){var a=e.x-n.x,o=e.y-n.y,s=(i.x1-r.x2)/a,l=(i.x2-r.x1)/a,c=(i.y1-r.y2)*this.yStretch/o,u=(i.y2-r.y1)*this.yStretch/o;(isNaN(s)||isNaN(l))&&(s=l=1),(isNaN(c)||isNaN(u))&&(c=u=1);var f=Math.min(Math.max(s,l),Math.max(c,u)),h=i.maxScale,d=r.maxScale;return f>h&&(f=h),f>d&&(f=d),f>t&&f>=i.placementScale&&(t=f),t},o.prototype.insertCollisionFeature=function(t,e,r){for(var n=r?this.ignoredGrid:this.grid,i=this.collisionBoxArray,a=t.boxStartIndex;a<t.boxEndIndex;a++){var o=i.get(a);o.placementScale=e,e<this.maxScale&&n.insert(a,o.bbox0,o.bbox1,o.bbox2,o.bbox3)}}},{"../data/bucket":301,"grid-index":254,"point-geometry":458}],369:[function(t,e,r){"use strict";var n=t("../util/interpolate"),i=t("../symbol/anchor"),a=t("./check_max_angle");e.exports=function(t,e,r,o,s,l,c,u,f){var h=o?.6*l*c:0,d=Math.max(o?o.right-o.left:0,s?s.right-s.left:0),p=0===t[0].x||t[0].x===f||0===t[0].y||t[0].y===f;e-d*c<e/4&&(e=d*c+e/4);return function t(e,r,o,s,l,c,u,f,h){var d=c/2;var p=0;for(var m=0;m<e.length-1;m++)p+=e[m].dist(e[m+1]);var v=0,g=r-o;var y=[];for(var b=0;b<e.length-1;b++){for(var x=e[b],_=e[b+1],w=x.dist(_),M=_.angleTo(x);g+o<v+w;){var k=((g+=o)-v)/w,A=n(x.x,_.x,k),T=n(x.y,_.y,k);if(A>=0&&A<h&&T>=0&&T<h&&g-d>=0&&g+d<=p){var E=new i(A,T,M,b)._round();s&&!a(e,E,c,s,l)||y.push(E)}}v+=w}f||y.length||u||(y=t(e,v/2,o,s,l,c,u,!0,h));return y}(t,p?e/2*u%e:(d/2+2*l)*c*u%e,e,h,r,d*c,p,!1,f)}},{"../symbol/anchor":363,"../util/interpolate":408,"./check_max_angle":364}],370:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/util"),a=128;function o(){this.width=a,this.height=a,this.bin=new n(this.width,this.height),this.index={},this.ids={},this.data=new Uint8Array(this.width*this.height)}e.exports=o,o.prototype.getGlyphs=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]=[]),n[e].push(r);return n},o.prototype.getRects=function(){var t,e,r,n={};for(var i in this.ids)e=(t=i.split("#"))[0],r=t[1],n[e]||(n[e]={}),n[e][r]=this.index[i];return n},o.prototype.addGlyph=function(t,e,r,n){if(!r)return null;var a=e+"#"+r.id;if(this.index[a])return this.ids[a].indexOf(t)<0&&this.ids[a].push(t),this.index[a];if(!r.bitmap)return null;var o=r.width+2*n,s=r.height+2*n,l=o+2,c=s+2;l+=4-l%4,c+=4-c%4;var u=this.bin.packOne(l,c);if(u||(this.resize(),u=this.bin.packOne(l,c)),!u)return i.warnOnce("glyph bitmap overflow"),null;this.index[a]=u,this.ids[a]=[t];for(var f=this.data,h=r.bitmap,d=0;d<s;d++)for(var p=this.width*(u.y+d+1)+u.x+1,m=o*d,v=0;v<o;v++)f[p+v]=h[m+v];return this.dirty=!0,u},o.prototype.resize=function(){var t=this.width,e=this.height;if(!(t>=2048||e>=2048)){this.texture&&(this.gl&&this.gl.deleteTexture(this.texture),this.texture=null),this.width*=4,this.height*=4,this.bin.resize(this.width,this.height);for(var r=new ArrayBuffer(this.width*this.height),n=0;n<e;n++){var i=new Uint8Array(this.data.buffer,e*n,t);new Uint8Array(r,e*n*4,t).set(i)}this.data=new Uint8Array(r)}},o.prototype.bind=function(t){this.gl=t,this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,t.LINEAR),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),t.texImage2D(t.TEXTURE_2D,0,t.ALPHA,this.width,this.height,0,t.ALPHA,t.UNSIGNED_BYTE,null))},o.prototype.updateTexture=function(t){this.bind(t),this.dirty&&(t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width,this.height,t.ALPHA,t.UNSIGNED_BYTE,this.data),this.dirty=!1)}},{"../util/util":414,"shelf-pack":501}],371:[function(t,e,r){"use strict";var n=t("../util/mapbox").normalizeGlyphsURL,i=t("../util/ajax").getArrayBuffer,a=t("../util/glyphs"),o=t("../symbol/glyph_atlas"),s=t("pbf");function l(t){this.url=t&&n(t),this.atlases={},this.stacks={},this.loading={}}function c(t,e,r){this.advance=t.advance,this.left=t.left-r-1,this.top=t.top+r+1,this.rect=e}e.exports=l,l.prototype.getSimpleGlyphs=function(t,e,r,n){void 0===this.stacks[t]&&(this.stacks[t]={}),void 0===this.atlases[t]&&(this.atlases[t]=new o);for(var i,a={},s=this.stacks[t],l=this.atlases[t],u={},f=0,h=0;h<e.length;h++){var d=e[h];if(s[i=Math.floor(d/256)]){var p=s[i].glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}else void 0===u[i]&&(u[i]=[],f++),u[i].push(d)}f||n(void 0,a,t);var v=function(e,i,o){if(!e)for(var s=this.stacks[t][i]=o.stacks[0],h=0;h<u[i].length;h++){var d=u[i][h],p=s.glyphs[d],m=l.addGlyph(r,t,p,3);p&&(a[d]=new c(p,m,3))}--f||n(void 0,a,t)}.bind(this);for(var g in u)this.loadRange(t,g,v)},l.prototype.loadRange=function(t,e,r){if(256*e>65535)return r("glyphs > 65535 not supported");void 0===this.loading[t]&&(this.loading[t]={});var n=this.loading[t];if(n[e])n[e].push(r);else{n[e]=[r];var o=function(t,e,r,n){return n=n||"abc",r.replace("{s}",n[t.length%n.length]).replace("{fontstack}",t).replace("{range}",e)}(t,256*e+"-"+(256*e+255),this.url);i(o,function(t,r){for(var i=!t&&new a(new s(new Uint8Array(r))),o=0;o<n[e].length;o++)n[e][o](t,e,i);delete n[e]})}},l.prototype.getGlyphAtlas=function(t){return this.atlases[t]}},{"../symbol/glyph_atlas":370,"../util/ajax":397,"../util/glyphs":407,"../util/mapbox":411,pbf:451}],372:[function(t,e,r){"use strict";e.exports=function(t,e,r){var n,i={},a={},o=[],s=[],l=[],c=0;function u(n){o.push(t[n]),s.push(r[n]),l.push(e[n]),c++}function f(t,e,r){var n=a[t];return delete a[t],a[e]=n,s[n][0].pop(),s[n][0]=s[n][0].concat(r[0]),n}function h(t,e,r){var n=i[e];return delete i[e],i[t]=n,s[n][0].shift(),s[n][0]=r[0].concat(s[n][0]),n}function d(t,e,r){var n=r?e[0][e[0].length-1]:e[0][0];return t+":"+n.x+":"+n.y}for(n=0;n<t.length;n++){var p=r[n],m=e[n];if(m){var v=d(m,p),g=d(m,p,!0);if(v in a&&g in i&&a[v]!==i[g]){var y=h(v,g,p),b=f(v,g,s[y]);delete i[v],delete a[g],a[d(m,s[b],!0)]=b,s[y]=null}else v in a?f(v,g,p):g in i?h(v,g,p):(u(n),i[v]=c-1,a[g]=c-1)}else u(n)}return{features:o,textFeatures:l,geometries:s}}},{}],373:[function(t,e,r){"use strict";var n=t("point-geometry");e.exports={getIconQuads:function(t,e,r,o,s,l,c,u,f){var h,d,p,m,v=e.image.rect,g=s.layout,y=e.left-1,b=y+v.w/e.image.pixelRatio,x=e.top-1,_=x+v.h/e.image.pixelRatio;if("none"!==g["icon-text-fit"]&&c){var w=b-y,M=_-x,k=g["text-size"]/24,A=c.left*k,T=c.right*k,E=c.top*k,S=c.bottom*k,L=T-A,C=S-E,P=g["icon-text-fit-padding"][0],z=g["icon-text-fit-padding"][1],O=g["icon-text-fit-padding"][2],D=g["icon-text-fit-padding"][3],I="width"===g["icon-text-fit"]?.5*(C-M):0,R="height"===g["icon-text-fit"]?.5*(L-w):0,N="width"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?L:w,F="height"===g["icon-text-fit"]||"both"===g["icon-text-fit"]?C:M;h=new n(A+R-D,E+I-P),d=new n(A+R+z+N,E+I-P),p=new n(A+R+z+N,E+I+O+F),m=new n(A+R-D,E+I+O+F)}else h=new n(y,x),d=new n(b,x),p=new n(b,_),m=new n(y,_);var j=s.getLayoutValue("icon-rotate",u,f)*Math.PI/180;if(l){var B=o[t.segment];if(t.y===B.y&&t.x===B.x&&t.segment+1<o.length){var U=o[t.segment+1];j+=Math.atan2(t.y-U.y,t.x-U.x)+Math.PI}else j+=Math.atan2(t.y-B.y,t.x-B.x)}if(j){var V=Math.sin(j),q=Math.cos(j),H=[q,-V,V,q];h=h.matMult(H),d=d.matMult(H),m=m.matMult(H),p=p.matMult(H)}return[new a(new n(t.x,t.y),h,d,m,p,e.image.rect,0,0,i,1/0)]},getGlyphQuads:function(t,e,r,s,l,c){for(var u=l.layout["text-rotate"]*Math.PI/180,f=l.layout["text-keep-upright"],h=e.positionedGlyphs,d=[],p=0;p<h.length;p++){var m=h[p],v=m.glyph,g=v.rect;if(g){var y,b=(m.x+v.advance/2)*r,x=i;c?(x=o(y=[],t,b,s,t.segment,!0),f&&(x=Math.min(x,o(y,t,b,s,t.segment,!1)))):y=[{anchorPoint:new n(t.x,t.y),offset:0,angle:0,maxScale:1/0,minScale:i}];for(var _=m.x+v.left,w=m.y-v.top,M=_+g.w,k=w+g.h,A=new n(_,w),T=new n(M,w),E=new n(_,k),S=new n(M,k),L=0;L<y.length;L++){var C=y[L],P=A,z=T,O=E,D=S;if(u){var I=Math.sin(u),R=Math.cos(u),N=[R,-I,I,R];P=P.matMult(N),z=z.matMult(N),O=O.matMult(N),D=D.matMult(N)}var F=Math.max(C.minScale,x),j=(t.angle+C.offset+2*Math.PI)%(2*Math.PI),B=(C.angle+C.offset+2*Math.PI)%(2*Math.PI);d.push(new a(C.anchorPoint,P,z,O,D,g,j,B,F,C.maxScale))}}}return d},SymbolQuad:a};var i=.5;function a(t,e,r,n,i,a,o,s,l,c){this.anchorPoint=t,this.tl=e,this.tr=r,this.bl=n,this.br=i,this.tex=a,this.anchorAngle=o,this.glyphAngle=s,this.minScale=l,this.maxScale=c}function o(t,e,r,a,o,s){var l=!s;r<0&&(s=!s),s&&o++;var c=new n(e.x,e.y),u=a[o],f=1/0;r=Math.abs(r);for(var h=i;;){var d=c.dist(u),p=r/d,m=Math.atan2(u.y-c.y,u.x-c.x);if(s||(m+=Math.PI),t.push({anchorPoint:c,offset:l?Math.PI:0,minScale:p,maxScale:f,angle:(m+2*Math.PI)%(2*Math.PI)}),p<=h)break;for(c=u;c.equals(u);)if(!(u=a[o+=s?1:-1]))return p;var v=u.sub(c)._unit();c=c.sub(v._mult(d)),f=p}return h}},{"point-geometry":458}],374:[function(t,e,r){"use strict";var n=t("../util/token");e.exports=function(t,e,r){for(var i=[],a=0,o=t.length;a<o;a++){var s=n(t[a].properties,e["text-field"]);if(s){s=s.toString();var l=e["text-transform"];"uppercase"===l?s=s.toLocaleUpperCase():"lowercase"===l&&(s=s.toLocaleLowerCase());for(var c=0;c<s.length;c++)r[s.charCodeAt(c)]=!0;i[a]=s}else i[a]=null}return i}},{"../util/token":413}],375:[function(t,e,r){"use strict";function n(t,e,r,n){this.codePoint=t,this.x=e,this.y=r,this.glyph=n}e.exports={shapeText:function(t,e,r,s,l,c,u,f,h){for(var d=[],p=new function(t,e,r,n,i,a){this.positionedGlyphs=t,this.text=e,this.top=r,this.bottom=n,this.left=i,this.right=a}(d,t,h[1],h[1],h[0],h[0]),m=0,v=0;v<t.length;v++){var g=t.charCodeAt(v),y=e[g];y&&(d.push(new n(g,m,-17,y)),m+=y.advance+f)}return!!d.length&&(function(t,e,r,n,s,l,c,u){var f=null,h=0,d=0,p=0,m=0,v=t.positionedGlyphs;if(n)for(var g=0;g<v.length;g++){var y=v[g];if(y.x-=h,y.y+=r*p,y.x>n&&null!==f){var b=v[f+1].x;m=Math.max(b,m);for(var x=f+1;x<=g;x++)v[x].y+=r,v[x].x-=b;if(c){var _=f;i[v[f].codePoint]&&_--,o(v,e,d,_,c)}d=f+1,f=null,h+=b,p++}a[y.codePoint]&&(f=g)}var w=v[v.length-1],M=w.x+e[w.codePoint].advance;m=Math.max(m,M);var k=(p+1)*r;o(v,e,d,v.length-1,c),function(t,e,r,n,i,a,o,s){for(var l=(e-r)*i+s[0],c=(-n*(o+1)+.5)*a+s[1],u=0;u<t.length;u++)t[u].x+=l,t[u].y+=c}(v,c,s,l,m,r,p,u),t.top+=-l*k,t.bottom=t.top+k,t.left+=-s*m,t.right=t.left+m}(p,e,s,r,l,c,u,h),p)},shapeIcon:function(t,e){if(!t||!t.rect)return null;var r=e["icon-offset"][0],n=e["icon-offset"][1],i=r-t.width/2,a=i+t.width,o=n-t.height/2,s=o+t.height;return new function(t,e,r,n,i){this.image=t,this.top=e,this.bottom=r,this.left=n,this.right=i}(t,o,s,i,a)}};var i={32:!0,8203:!0},a={32:!0,38:!0,43:!0,45:!0,47:!0,173:!0,183:!0,8203:!0,8208:!0,8211:!0};function o(t,e,r,n,i){for(var a=e[t[n].codePoint].advance,o=(t[n].x+a)*i,s=r;s<=n;s++)t[s].x-=o}},{}],376:[function(t,e,r){"use strict";var n=t("shelf-pack"),i=t("../util/browser"),a=t("../util/util");function o(t,e){this.width=t,this.height=e,this.bin=new n(t,e),this.images={},this.data=!1,this.texture=0,this.filter=0,this.pixelRatio=1,this.dirty=!0}e.exports=o,o.prototype.allocateImage=function(t,e){var r=(t/=this.pixelRatio)+2+(4-(t+2)%4),n=(e/=this.pixelRatio)+2+(4-(e+2)%4),i=this.bin.packOne(r,n);return i||(a.warnOnce("SpriteAtlas out of space."),null)},o.prototype.getImage=function(t,e){if(this.images[t])return this.images[t];if(!this.sprite)return null;var r=this.sprite.getSpritePosition(t);if(!r.width||!r.height)return null;var n=this.allocateImage(r.width,r.height);if(!n)return null;var i=new function(t,e,r,n,i){this.rect=t,this.width=e,this.height=r,this.sdf=n,this.pixelRatio=i}(n,r.width/r.pixelRatio,r.height/r.pixelRatio,r.sdf,r.pixelRatio/this.pixelRatio);return this.images[t]=i,this.copy(n,r,e),i},o.prototype.getPosition=function(t,e){var r=this.getImage(t,e),n=r&&r.rect;if(!n)return null;var i=r.width*r.pixelRatio,a=r.height*r.pixelRatio;return{size:[r.width,r.height],tl:[(n.x+1)/this.width,(n.y+1)/this.height],br:[(n.x+1+i)/this.width,(n.y+1+a)/this.height]}},o.prototype.allocate=function(){if(!this.data){var t=Math.floor(this.width*this.pixelRatio),e=Math.floor(this.height*this.pixelRatio);this.data=new Uint32Array(t*e);for(var r=0;r<this.data.length;r++)this.data[r]=0}},o.prototype.copy=function(t,e,r){if(this.sprite.img.data){var n=new Uint32Array(this.sprite.img.data.buffer);this.allocate();var i=this.data;!function(t,e,r,n,i,a,o,s,l,c,u){var f,h,d=n*e+r,p=s*a+o;if(u)for(p-=a,h=-1;h<=c;d=((++h+c)%c+n)*e+r,p+=a)for(f=-1;f<=l;f++)i[p+f]=t[d+(f+l)%l];else for(h=0;h<c;h++,d+=e,p+=a)for(f=0;f<l;f++)i[p+f]=t[d+f]}(n,this.sprite.img.width,e.x,e.y,i,this.width*this.pixelRatio,(t.x+1)*this.pixelRatio,(t.y+1)*this.pixelRatio,e.width,e.height,r),this.dirty=!0}},o.prototype.setSprite=function(t){t&&(this.pixelRatio=i.devicePixelRatio>1?2:1,this.canvas&&(this.canvas.width=this.width*this.pixelRatio,this.canvas.height=this.height*this.pixelRatio)),this.sprite=t},o.prototype.addIcons=function(t,e){for(var r=0;r<t.length;r++)this.getImage(t[r]);e(null,this.images)},o.prototype.bind=function(t,e){var r=!1;this.texture?t.bindTexture(t.TEXTURE_2D,this.texture):(this.texture=t.createTexture(),t.bindTexture(t.TEXTURE_2D,this.texture),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_S,t.CLAMP_TO_EDGE),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_WRAP_T,t.CLAMP_TO_EDGE),r=!0);var n=e?t.LINEAR:t.NEAREST;n!==this.filter&&(t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MIN_FILTER,n),t.texParameteri(t.TEXTURE_2D,t.TEXTURE_MAG_FILTER,n),this.filter=n),this.dirty&&(this.allocate(),r?t.texImage2D(t.TEXTURE_2D,0,t.RGBA,this.width*this.pixelRatio,this.height*this.pixelRatio,0,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)):t.texSubImage2D(t.TEXTURE_2D,0,0,0,this.width*this.pixelRatio,this.height*this.pixelRatio,t.RGBA,t.UNSIGNED_BYTE,new Uint8Array(this.data.buffer)),this.dirty=!1)}},{"../util/browser":398,"../util/util":414,"shelf-pack":501}],377:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=e.exports=new n({members:[{type:"Uint16",name:"textBoxStartIndex"},{type:"Uint16",name:"textBoxEndIndex"},{type:"Uint16",name:"iconBoxStartIndex"},{type:"Uint16",name:"iconBoxEndIndex"},{type:"Uint16",name:"glyphQuadStartIndex"},{type:"Uint16",name:"glyphQuadEndIndex"},{type:"Uint16",name:"iconQuadStartIndex"},{type:"Uint16",name:"iconQuadEndIndex"},{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Int8",name:"index"}]});i.extendAll(o.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)}})},{"../util/struct_array":412,"../util/util":414,"point-geometry":458}],378:[function(t,e,r){"use strict";var n=t("../util/struct_array"),i=t("../util/util"),a=t("point-geometry"),o=t("./quads").SymbolQuad,s=e.exports=new n({members:[{type:"Int16",name:"anchorPointX"},{type:"Int16",name:"anchorPointY"},{type:"Float32",name:"tlX"},{type:"Float32",name:"tlY"},{type:"Float32",name:"trX"},{type:"Float32",name:"trY"},{type:"Float32",name:"blX"},{type:"Float32",name:"blY"},{type:"Float32",name:"brX"},{type:"Float32",name:"brY"},{type:"Int16",name:"texH"},{type:"Int16",name:"texW"},{type:"Int16",name:"texX"},{type:"Int16",name:"texY"},{type:"Float32",name:"anchorAngle"},{type:"Float32",name:"glyphAngle"},{type:"Float32",name:"maxScale"},{type:"Float32",name:"minScale"}]});i.extendAll(s.prototype.StructType.prototype,{get anchorPoint(){return new a(this.anchorPointX,this.anchorPointY)},get SymbolQuad(){return new o(this.anchorPoint,new a(this.tlX,this.tlY),new a(this.trX,this.trY),new a(this.blX,this.blY),new a(this.brX,this.brY),{x:this.texX,y:this.texY,h:this.texH,w:this.texW,height:this.texH,width:this.texW},this.anchorAngle,this.glyphAngle,this.minScale,this.maxScale)}})},{"../util/struct_array":412,"../util/util":414,"./quads":373,"point-geometry":458}],379:[function(t,e,r){"use strict";var n=t("../util/dom"),i=t("point-geometry"),a={scrollZoom:t("./handler/scroll_zoom"),boxZoom:t("./handler/box_zoom"),dragRotate:t("./handler/drag_rotate"),dragPan:t("./handler/drag_pan"),keyboard:t("./handler/keyboard"),doubleClickZoom:t("./handler/dblclick_zoom"),touchZoomRotate:t("./handler/touch_zoom_rotate")};e.exports=function(t,e){var r=t.getCanvasContainer(),o=null,s=null,l=null;for(var c in a)t[c]=new a[c](t,e),e.interactive&&e[c]&&t[c].enable();function u(){l=null}function f(e,i){var a=n.mousePos(r,i);return t.fire(e,{lngLat:t.unproject(a),point:a,originalEvent:i})}function h(e,a){var o=n.touchPos(r,a),s=o.reduce(function(t,e,r,n){return t.add(e.div(n.length))},new i(0,0));return t.fire(e,{lngLat:t.unproject(s),point:s,lngLats:o.map(function(e){return t.unproject(e)},this),points:o,originalEvent:a})}r.addEventListener("mouseout",function(t){f("mouseout",t)},!1),r.addEventListener("mousedown",function(e){t.stop(),s=n.mousePos(r,e),f("mousedown",e)},!1),r.addEventListener("mouseup",function(e){var r=t.dragRotate&&t.dragRotate.isActive();o&&!r&&f("contextmenu",o);o=null,f("mouseup",e)},!1),r.addEventListener("mousemove",function(e){if(t.dragPan&&t.dragPan.isActive())return;if(t.dragRotate&&t.dragRotate.isActive())return;var n=e.toElement||e.target;for(;n&&n!==r;)n=n.parentNode;if(n!==r)return;f("mousemove",e)},!1),r.addEventListener("touchstart",function(e){if(t.stop(),h("touchstart",e),!e.touches||e.touches.length>1)return;l?(clearTimeout(l),l=null,f("dblclick",e)):l=setTimeout(u,300)},!1),r.addEventListener("touchend",function(t){h("touchend",t)},!1),r.addEventListener("touchmove",function(t){h("touchmove",t)},!1),r.addEventListener("touchcancel",function(t){h("touchcancel",t)},!1),r.addEventListener("click",function(t){n.mousePos(r,t).equals(s)&&f("click",t)},!1),r.addEventListener("dblclick",function(t){f("dblclick",t),t.preventDefault()},!1),r.addEventListener("contextmenu",function(t){o=t,t.preventDefault()},!1)}},{"../util/dom":400,"./handler/box_zoom":385,"./handler/dblclick_zoom":386,"./handler/drag_pan":387,"./handler/drag_rotate":388,"./handler/keyboard":389,"./handler/scroll_zoom":390,"./handler/touch_zoom_rotate":391,"point-geometry":458}],380:[function(t,e,r){"use strict";var n=t("../util/util"),i=t("../util/interpolate"),a=t("../util/browser"),o=t("../geo/lng_lat"),s=t("../geo/lng_lat_bounds"),l=t("point-geometry"),c=e.exports=function(){};n.extend(c.prototype,{getCenter:function(){return this.transform.center},setCenter:function(t,e){return this.jumpTo({center:t},e),this},panBy:function(t,e,r){return this.panTo(this.transform.center,n.extend({offset:l.convert(t).mult(-1)},e),r),this},panTo:function(t,e,r){return this.easeTo(n.extend({center:t},e),r)},getZoom:function(){return this.transform.zoom},setZoom:function(t,e){return this.jumpTo({zoom:t},e),this},zoomTo:function(t,e,r){return this.easeTo(n.extend({zoom:t},e),r)},zoomIn:function(t,e){return this.zoomTo(this.getZoom()+1,t,e),this},zoomOut:function(t,e){return this.zoomTo(this.getZoom()-1,t,e),this},getBearing:function(){return this.transform.bearing},setBearing:function(t,e){return this.jumpTo({bearing:t},e),this},rotateTo:function(t,e,r){return this.easeTo(n.extend({bearing:t},e),r)},resetNorth:function(t,e){return this.rotateTo(0,n.extend({duration:1e3},t),e),this},snapToNorth:function(t,e){return Math.abs(this.getBearing())<this._bearingSnap?this.resetNorth(t,e):this},getPitch:function(){return this.transform.pitch},setPitch:function(t,e){return this.jumpTo({pitch:t},e),this},fitBounds:function(t,e,r){e=n.extend({padding:0,offset:[0,0],maxZoom:1/0},e),t=s.convert(t);var i=l.convert(e.offset),a=this.transform,o=a.project(t.getNorthWest()),c=a.project(t.getSouthEast()),u=c.sub(o),f=(a.width-2*e.padding-2*Math.abs(i.x))/u.x,h=(a.height-2*e.padding-2*Math.abs(i.y))/u.y;return e.center=a.unproject(o.add(c).div(2)),e.zoom=Math.min(a.scaleZoom(a.scale*Math.min(f,h)),e.maxZoom),e.bearing=0,e.linear?this.easeTo(e,r):this.flyTo(e,r)},jumpTo:function(t,e){this.stop();var r=this.transform,n=!1,i=!1,a=!1;return"zoom"in t&&r.zoom!==+t.zoom&&(n=!0,r.zoom=+t.zoom),"center"in t&&(r.center=o.convert(t.center)),"bearing"in t&&r.bearing!==+t.bearing&&(i=!0,r.bearing=+t.bearing),"pitch"in t&&r.pitch!==+t.pitch&&(a=!0,r.pitch=+t.pitch),this.fire("movestart",e).fire("move",e),n&&this.fire("zoomstart",e).fire("zoom",e).fire("zoomend",e),i&&this.fire("rotate",e),a&&this.fire("pitch",e),this.fire("moveend",e)},easeTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],duration:500,easing:n.ease},t);var r,a,s=this.transform,c=l.convert(t.offset),u=this.getZoom(),f=this.getBearing(),h=this.getPitch(),d="zoom"in t?+t.zoom:u,p="bearing"in t?this._normalizeBearing(t.bearing,f):f,m="pitch"in t?+t.pitch:h;"center"in t?(r=o.convert(t.center),a=s.centerPoint.add(c)):"around"in t?(r=o.convert(t.around),a=s.locationPoint(r)):(a=s.centerPoint.add(c),r=s.pointLocation(a));var v=s.locationPoint(r);return!1===t.animate&&(t.duration=0),this.zooming=d!==u,this.rotating=f!==p,this.pitching=m!==h,t.noMoveStart||this.fire("movestart",e),this.zooming&&this.fire("zoomstart",e),clearTimeout(this._onEaseEnd),this._ease(function(t){this.zooming&&(s.zoom=i(u,d,t)),this.rotating&&(s.bearing=i(f,p,t)),this.pitching&&(s.pitch=i(h,m,t)),s.setLocationAtPoint(r,v.add(a.sub(v)._mult(t))),this.fire("move",e),this.zooming&&this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){t.delayEndEvents?this._onEaseEnd=setTimeout(this._easeToEnd.bind(this,e),t.delayEndEvents):this._easeToEnd(e)}.bind(this),t),this},_easeToEnd:function(t){var e=this.zooming;this.zooming=!1,this.rotating=!1,this.pitching=!1,e&&this.fire("zoomend",t),this.fire("moveend",t)},flyTo:function(t,e){this.stop(),t=n.extend({offset:[0,0],speed:1.2,curve:1.42,easing:n.ease},t);var r=this.transform,a=l.convert(t.offset),s=this.getZoom(),c=this.getBearing(),u=this.getPitch(),f="center"in t?o.convert(t.center):this.getCenter(),h="zoom"in t?+t.zoom:s,d="bearing"in t?this._normalizeBearing(t.bearing,c):c,p="pitch"in t?+t.pitch:u;Math.abs(r.center.lng)+Math.abs(f.lng)>180&&(r.center.lng>0&&f.lng<0?f.lng+=360:r.center.lng<0&&f.lng>0&&(f.lng-=360));var m=r.zoomScale(h-s),v=r.point,g="center"in t?r.project(f).sub(a.div(m)):v,y=r.worldSize,b=t.curve,x=Math.max(r.width,r.height),_=x/m,w=g.sub(v).mag();if("minZoom"in t){var M=n.clamp(Math.min(t.minZoom,s,h),r.minZoom,r.maxZoom),k=x/r.zoomScale(M-s);b=Math.sqrt(k/w*2)}var A=b*b;function T(t){var e=(_*_-x*x+(t?-1:1)*A*A*w*w)/(2*(t?_:x)*A*w);return Math.log(Math.sqrt(e*e+1)-e)}function E(t){return(Math.exp(t)-Math.exp(-t))/2}function S(t){return(Math.exp(t)+Math.exp(-t))/2}var L=T(0),C=function(t){return S(L)/S(L+b*t)},P=function(t){return x*((S(L)*(E(e=L+b*t)/S(e))-E(L))/A)/w;var e},z=(T(1)-L)/b;if(Math.abs(w)<1e-6){if(Math.abs(x-_)<1e-6)return this.easeTo(t);var O=_<x?-1:1;z=Math.abs(Math.log(_/x))/b,P=function(){return 0},C=function(t){return Math.exp(O*b*t)}}if("duration"in t)t.duration=+t.duration;else{var D="screenSpeed"in t?+t.screenSpeed/b:+t.speed;t.duration=1e3*z/D}return this.zooming=!0,c!==d&&(this.rotating=!0),u!==p&&(this.pitching=!0),this.fire("movestart",e),this.fire("zoomstart",e),this._ease(function(t){var n=t*z,a=P(n);r.zoom=s+r.scaleZoom(1/C(n)),r.center=r.unproject(v.add(g.sub(v).mult(a)),y),this.rotating&&(r.bearing=i(c,d,t)),this.pitching&&(r.pitch=i(u,p,t)),this.fire("move",e),this.fire("zoom",e),this.rotating&&this.fire("rotate",e),this.pitching&&this.fire("pitch",e)},function(){this.zooming=!1,this.rotating=!1,this.pitching=!1,this.fire("zoomend",e),this.fire("moveend",e)},t),this},isEasing:function(){return!!this._abortFn},stop:function(){return this._abortFn&&(this._abortFn(),this._finishEase()),this},_ease:function(t,e,r){this._finishFn=e,this._abortFn=a.timed(function(e){t.call(this,r.easing(e)),1===e&&this._finishEase()},!1===r.animate?0:r.duration,this)},_finishEase:function(){delete this._abortFn;var t=this._finishFn;delete this._finishFn,t.call(this)},_normalizeBearing:function(t,e){t=n.wrap(t,-180,180);var r=Math.abs(t-e);return Math.abs(t-360-e)<r&&(t-=360),Math.abs(t+360-e)<r&&(t+=360),t},_updateEasing:function(t,e,r){var i;if(this.ease){var a=this.ease,o=(Date.now()-a.start)/a.duration,s=a.easing(o+.01)-a.easing(o),l=.27/Math.sqrt(s*s+1e-4)*.01,c=Math.sqrt(.0729-l*l);i=n.bezier(l,c,.25,1)}else i=r?n.bezier.apply(n,r):n.ease;return this.ease={start:(new Date).getTime(),to:Math.pow(2,e),duration:t,easing:i},i}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../util/browser":398,"../util/interpolate":408,"../util/util":414,"point-geometry":458}],381:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}e.exports=o,o.createAttributionString=function(t){var e=[];for(var r in t){var n=t[r];n.attribution&&e.indexOf(n.attribution)<0&&e.push(n.attribution)}return e.sort(function(t,e){return t.length-e.length}),(e=e.filter(function(t,r){for(var n=r+1;n<e.length;n++)if(e[n].indexOf(t)>=0)return!1;return!0})).join(" | ")},o.prototype=a.inherit(n,{options:{position:"bottom-right"},onAdd:function(t){var e=this._container=i.create("div","mapboxgl-ctrl-attrib",t.getContainer());return this._update(),t.on("source.load",this._update.bind(this)),t.on("source.change",this._update.bind(this)),t.on("source.remove",this._update.bind(this)),t.on("moveend",this._updateEditLink.bind(this)),e},_update:function(){this._map.style&&(this._container.innerHTML=o.createAttributionString(this._map.style.sources)),this._editLink=this._container.getElementsByClassName("mapbox-improve-map")[0],this._updateEditLink()},_updateEditLink:function(){if(this._editLink){var t=this._map.getCenter();this._editLink.href="https://www.mapbox.com/map-feedback/#/"+t.lng+"/"+t.lat+"/"+Math.round(this._map.getZoom()+1)}}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],382:[function(t,e,r){"use strict";var n=t("../../util/util"),i=t("../../util/evented");function a(){}e.exports=a,a.prototype={addTo:function(t){this._map=t;var e=this._container=this.onAdd(t);if(this.options&&this.options.position){var r=this.options.position,n=t._controlCorners[r];e.className+=" mapboxgl-ctrl",-1!==r.indexOf("bottom")?n.insertBefore(e,n.firstChild):n.appendChild(e)}return this},remove:function(){return this._container.parentNode.removeChild(this._container),this.onRemove&&this.onRemove(this._map),this._map=null,this}},n.extend(a.prototype,i)},{"../../util/evented":406,"../../util/util":414}],383:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/browser"),a=t("../../util/dom"),o=t("../../util/util");e.exports=l;var s={enableHighAccuracy:!1,timeout:6e3};function l(t){o.setOptions(this,t)}l.prototype=o.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e=this._container=a.create("div","mapboxgl-ctrl-group",t.getContainer());return i.supportsGeolocation?(this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._geolocateButton=a.create("button","mapboxgl-ctrl-icon mapboxgl-ctrl-geolocate",this._container),this._geolocateButton.type="button",this._geolocateButton.addEventListener("click",this._onClickGeolocate.bind(this)),e):e},_onContextMenu:function(t){t.preventDefault()},_onClickGeolocate:function(){navigator.geolocation.getCurrentPosition(this._success.bind(this),this._error.bind(this),s),this._timeoutId=setTimeout(this._finish.bind(this),1e4)},_success:function(t){this._map.jumpTo({center:[t.coords.longitude,t.coords.latitude],zoom:17,bearing:0,pitch:0}),this.fire("geolocate",t),this._finish()},_error:function(t){this.fire("error",t),this._finish()},_finish:function(){this._timeoutId&&clearTimeout(this._timeoutId),this._timeoutId=void 0}})},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414,"./control":382}],384:[function(t,e,r){"use strict";var n=t("./control"),i=t("../../util/dom"),a=t("../../util/util");function o(t){a.setOptions(this,t)}function s(t){return new MouseEvent(t.type,{button:2,buttons:2,bubbles:!0,cancelable:!0,detail:t.detail,view:t.view,screenX:t.screenX,screenY:t.screenY,clientX:t.clientX,clientY:t.clientY,movementX:t.movementX,movementY:t.movementY,ctrlKey:t.ctrlKey,shiftKey:t.shiftKey,altKey:t.altKey,metaKey:t.metaKey})}e.exports=o,o.prototype=a.inherit(n,{options:{position:"top-right"},onAdd:function(t){var e="mapboxgl-ctrl",r=this._container=i.create("div",e+"-group",t.getContainer());return this._container.addEventListener("contextmenu",this._onContextMenu.bind(this)),this._zoomInButton=this._createButton(e+"-icon "+e+"-zoom-in",t.zoomIn.bind(t)),this._zoomOutButton=this._createButton(e+"-icon "+e+"-zoom-out",t.zoomOut.bind(t)),this._compass=this._createButton(e+"-icon "+e+"-compass",t.resetNorth.bind(t)),this._compassArrow=i.create("div","arrow",this._compass),this._compass.addEventListener("mousedown",this._onCompassDown.bind(this)),this._onCompassMove=this._onCompassMove.bind(this),this._onCompassUp=this._onCompassUp.bind(this),t.on("rotate",this._rotateCompassArrow.bind(this)),this._rotateCompassArrow(),this._el=t.getCanvasContainer(),r},_onContextMenu:function(t){t.preventDefault()},_onCompassDown:function(t){0===t.button&&(i.disableDrag(),document.addEventListener("mousemove",this._onCompassMove),document.addEventListener("mouseup",this._onCompassUp),this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassMove:function(t){0===t.button&&(this._el.dispatchEvent(s(t)),t.stopPropagation())},_onCompassUp:function(t){0===t.button&&(document.removeEventListener("mousemove",this._onCompassMove),document.removeEventListener("mouseup",this._onCompassUp),i.enableDrag(),this._el.dispatchEvent(s(t)),t.stopPropagation())},_createButton:function(t,e){var r=i.create("button",t,this._container);return r.type="button",r.addEventListener("click",function(){e()}),r},_rotateCompassArrow:function(){var t="rotate("+this._map.transform.angle*(180/Math.PI)+"deg)";this._compassArrow.style.transform=t}})},{"../../util/dom":400,"../../util/util":414,"./control":382}],385:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../geo/lng_lat_bounds"),a=t("../../util/util");function o(t){this._map=t,this._el=t.getCanvasContainer(),this._container=t.getContainer(),a.bindHandlers(this)}e.exports=o,o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onMouseDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onMouseDown),this._enabled=!1)},_onMouseDown:function(t){t.shiftKey&&0===t.button&&(document.addEventListener("mousemove",this._onMouseMove,!1),document.addEventListener("keydown",this._onKeyDown,!1),document.addEventListener("mouseup",this._onMouseUp,!1),n.disableDrag(),this._startPos=n.mousePos(this._el,t),this._active=!0)},_onMouseMove:function(t){var e=this._startPos,r=n.mousePos(this._el,t);this._box||(this._box=n.create("div","mapboxgl-boxzoom",this._container),this._container.classList.add("mapboxgl-crosshair"),this._fireEvent("boxzoomstart",t));var i=Math.min(e.x,r.x),a=Math.max(e.x,r.x),o=Math.min(e.y,r.y),s=Math.max(e.y,r.y);n.setTransform(this._box,"translate("+i+"px,"+o+"px)"),this._box.style.width=a-i+"px",this._box.style.height=s-o+"px"},_onMouseUp:function(t){if(0===t.button){var e=this._startPos,r=n.mousePos(this._el,t),a=new i(this._map.unproject(e),this._map.unproject(r));this._finish(),e.x===r.x&&e.y===r.y?this._fireEvent("boxzoomcancel",t):this._map.fitBounds(a,{linear:!0}).fire("boxzoomend",{originalEvent:t,boxZoomBounds:a})}},_onKeyDown:function(t){27===t.keyCode&&(this._finish(),this._fireEvent("boxzoomcancel",t))},_finish:function(){this._active=!1,document.removeEventListener("mousemove",this._onMouseMove,!1),document.removeEventListener("keydown",this._onKeyDown,!1),document.removeEventListener("mouseup",this._onMouseUp,!1),this._container.classList.remove("mapboxgl-crosshair"),this._box&&(this._box.parentNode.removeChild(this._box),this._box=null),n.enableDrag()},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})}}},{"../../geo/lng_lat_bounds":312,"../../util/dom":400,"../../util/util":414}],386:[function(t,e,r){"use strict";function n(t){this._map=t,this._onDblClick=this._onDblClick.bind(this)}e.exports=n,n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._map.on("dblclick",this._onDblClick),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._map.off("dblclick",this._onDblClick),this._enabled=!1)},_onDblClick:function(t){this._map.zoomTo(this._map.getZoom()+(t.originalEvent.shiftKey?-1:1),{around:t.lngLat},t)}}},{}],387:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.3,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._el.addEventListener("touchstart",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._el.removeEventListener("touchstart",this._onDown),this._enabled=!1)},_onDown:function(t){this._ignoreEvent(t)||this.isActive()||(t.touches?(document.addEventListener("touchmove",this._onMove),document.addEventListener("touchend",this._onTouchEnd)):(document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onMouseUp)),this._active=!1,this._startPos=this._pos=n.mousePos(this._el,t),this._inertia=[[Date.now(),this._pos]])},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("dragstart",t),this._fireEvent("movestart",t));var e=n.mousePos(this._el,t),r=this._map;r.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),e]),r.transform.setLocationAtPoint(r.transform.pointLocation(this._pos),e),this._fireEvent("drag",t),this._fireEvent("move",t),this._pos=e,t.preventDefault()}},_onUp:function(t){if(this.isActive()){this._active=!1,this._fireEvent("dragend",t),this._drainInertiaBuffer();var e=function(){this._fireEvent("moveend",t)}.bind(this),r=this._inertia;if(r.length<2)e();else{var n=r[r.length-1],i=r[0],o=n[1].sub(i[1]),s=(n[0]-i[0])/1e3;if(0===s||n[1].equals(i[1]))e();else{var l=o.mult(.3/s),c=l.mag();c>1400&&(c=1400,l._unit()._mult(c));var u=c/750,f=l.mult(-u/2);this._map.panBy(f,{duration:1e3*u,easing:a,noMoveStart:!0},{originalEvent:t})}}}},_onMouseUp:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onMouseUp))},_onTouchEnd:function(t){this._ignoreEvent(t)||(this._onUp(t),document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onTouchEnd))},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragRotate&&e.dragRotate.isActive())return!0;if(t.touches)return t.touches.length>1;if(t.ctrlKey)return!0;return"mousemove"===t.type?!1&t.buttons:0!==t.button},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],388:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("point-geometry"),a=t("../../util/util");e.exports=s;var o=a.bezier(0,0,.25,1);function s(t,e){this._map=t,this._el=t.getCanvasContainer(),this._bearingSnap=e.bearingSnap,a.bindHandlers(this)}s.prototype={_enabled:!1,_active:!1,isEnabled:function(){return this._enabled},isActive:function(){return this._active},enable:function(){this.isEnabled()||(this._el.addEventListener("mousedown",this._onDown),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("mousedown",this._onDown),this._enabled=!1)},_onDown:function(t){if(!this._ignoreEvent(t)&&!this.isActive()){document.addEventListener("mousemove",this._onMove),document.addEventListener("mouseup",this._onUp),this._active=!1,this._inertia=[[Date.now(),this._map.getBearing()]],this._startPos=this._pos=n.mousePos(this._el,t),this._center=this._map.transform.centerPoint;var e=this._startPos.sub(this._center);e.mag()<200&&(this._center=this._startPos.add(new i(-200,0)._rotate(e.angle()))),t.preventDefault()}},_onMove:function(t){if(!this._ignoreEvent(t)){this.isActive()||(this._active=!0,this._fireEvent("rotatestart",t),this._fireEvent("movestart",t));var e=this._map;e.stop();var r=this._pos,i=n.mousePos(this._el,t),a=this._center,o=r.sub(a).angleWith(i.sub(a))/Math.PI*180,s=e.getBearing()-o,l=this._inertia,c=l[l.length-1];this._drainInertiaBuffer(),l.push([Date.now(),e._normalizeBearing(s,c[1])]),e.transform.bearing=s,this._fireEvent("rotate",t),this._fireEvent("move",t),this._pos=i}},_onUp:function(t){if(!this._ignoreEvent(t)&&(document.removeEventListener("mousemove",this._onMove),document.removeEventListener("mouseup",this._onUp),this.isActive())){this._active=!1,this._fireEvent("rotateend",t),this._drainInertiaBuffer();var e=this._map,r=e.getBearing(),n=this._inertia,i=function(){Math.abs(r)<this._bearingSnap?e.resetNorth({noMoveStart:!0},{originalEvent:t}):this._fireEvent("moveend",t)}.bind(this);if(n.length<2)i();else{var a=n[0],s=n[n.length-1],l=n[n.length-2],c=e._normalizeBearing(r,l[1]),u=s[1]-a[1],f=u<0?-1:1,h=(s[0]-a[0])/1e3;if(0!==u&&0!==h){var d=Math.abs(u*(.25/h));d>180&&(d=180);var p=d/180;c+=f*d*(p/2),Math.abs(e._normalizeBearing(c,0))<this._bearingSnap&&(c=e._normalizeBearing(0,c)),e.rotateTo(c,{duration:1e3*p,easing:o,noMoveStart:!0},{originalEvent:t})}else i()}}},_fireEvent:function(t,e){return this._map.fire(t,{originalEvent:e})},_ignoreEvent:function(t){var e=this._map;if(e.boxZoom&&e.boxZoom.isActive())return!0;if(e.dragPan&&e.dragPan.isActive())return!0;if(t.touches)return t.touches.length>1;var r=t.ctrlKey?1:2,n=t.ctrlKey?0:2;return"mousemove"===t.type?t.buttons&0===r:t.button!==n},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>0&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414,"point-geometry":458}],389:[function(t,e,r){"use strict";e.exports=n;function n(t){this._map=t,this._el=t.getCanvasContainer(),this._onKeyDown=this._onKeyDown.bind(this)}n.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("keydown",this._onKeyDown,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("keydown",this._onKeyDown),this._enabled=!1)},_onKeyDown:function(t){if(!(t.altKey||t.ctrlKey||t.metaKey)){var e=this._map,r={originalEvent:t};if(!e.isEasing())switch(t.keyCode){case 61:case 107:case 171:case 187:e.zoomTo(Math.round(e.getZoom())+(t.shiftKey?2:1),r);break;case 189:case 109:case 173:e.zoomTo(Math.round(e.getZoom())-(t.shiftKey?2:1),r);break;case 37:t.shiftKey?e.easeTo({bearing:e.getBearing()-2},r):(t.preventDefault(),e.panBy([-80,0],r));break;case 39:t.shiftKey?e.easeTo({bearing:e.getBearing()+2},r):(t.preventDefault(),e.panBy([80,0],r));break;case 38:t.shiftKey?e.easeTo({pitch:e.getPitch()+5},r):(t.preventDefault(),e.panBy([0,-80],r));break;case 40:t.shiftKey?e.easeTo({pitch:Math.max(e.getPitch()-5,0)},r):(t.preventDefault(),e.panBy([0,80],r))}}}}},{}],390:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/browser"),a=t("../../util/util");e.exports=c;var o="undefined"!=typeof navigator?navigator.userAgent.toLowerCase():"",s=-1!==o.indexOf("firefox"),l=-1!==o.indexOf("safari")&&-1===o.indexOf("chrom");function c(t){this._map=t,this._el=t.getCanvasContainer(),a.bindHandlers(this)}c.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("wheel",this._onWheel,!1),this._el.addEventListener("mousewheel",this._onWheel,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("wheel",this._onWheel),this._el.removeEventListener("mousewheel",this._onWheel),this._enabled=!1)},_onWheel:function(t){var e;"wheel"===t.type?(e=t.deltaY,s&&t.deltaMode===window.WheelEvent.DOM_DELTA_PIXEL&&(e/=i.devicePixelRatio),t.deltaMode===window.WheelEvent.DOM_DELTA_LINE&&(e*=40)):"mousewheel"===t.type&&(e=-t.wheelDeltaY,l&&(e/=3));var r=i.now(),a=r-(this._time||0);this._pos=n.mousePos(this._el,t),this._time=r,0!==e&&e%4.000244140625==0?(this._type="wheel",e=Math.floor(e/4)):0!==e&&Math.abs(e)<4?this._type="trackpad":a>400?(this._type=null,this._lastValue=e,this._timeout=setTimeout(this._onTimeout,40)):this._type||(this._type=Math.abs(a*e)<200?"trackpad":"wheel",this._timeout&&(clearTimeout(this._timeout),this._timeout=null,e+=this._lastValue)),t.shiftKey&&e&&(e/=4),this._type&&this._zoom(-e,t),t.preventDefault()},_onTimeout:function(){this._type="wheel",this._zoom(-this._lastValue)},_zoom:function(t,e){if(0!==t){var r=this._map,n=2/(1+Math.exp(-Math.abs(t/100)));t<0&&0!==n&&(n=1/n);var i=r.ease?r.ease.to:r.transform.scale,a=r.transform.scaleZoom(i*n);r.zoomTo(a,{duration:0,around:r.unproject(this._pos),delayEndEvents:200},{originalEvent:e})}}}},{"../../util/browser":398,"../../util/dom":400,"../../util/util":414}],391:[function(t,e,r){"use strict";var n=t("../../util/dom"),i=t("../../util/util");e.exports=o;var a=i.bezier(0,0,.15,1);function o(t){this._map=t,this._el=t.getCanvasContainer(),i.bindHandlers(this)}o.prototype={_enabled:!1,isEnabled:function(){return this._enabled},enable:function(){this.isEnabled()||(this._el.addEventListener("touchstart",this._onStart,!1),this._enabled=!0)},disable:function(){this.isEnabled()&&(this._el.removeEventListener("touchstart",this._onStart),this._enabled=!1)},disableRotation:function(){this._rotationDisabled=!0},enableRotation:function(){this._rotationDisabled=!1},_onStart:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]);this._startVec=e.sub(r),this._startScale=this._map.transform.scale,this._startBearing=this._map.transform.bearing,this._gestureIntent=void 0,this._inertia=[],document.addEventListener("touchmove",this._onMove,!1),document.addEventListener("touchend",this._onEnd,!1)}},_onMove:function(t){if(2===t.touches.length){var e=n.mousePos(this._el,t.touches[0]),r=n.mousePos(this._el,t.touches[1]),i=e.add(r).div(2),a=e.sub(r),o=a.mag()/this._startVec.mag(),s=this._rotationDisabled?0:180*a.angleWith(this._startVec)/Math.PI,l=this._map;if(this._gestureIntent){var c={duration:0,around:l.unproject(i)};"rotate"===this._gestureIntent&&(c.bearing=this._startBearing+s),"zoom"!==this._gestureIntent&&"rotate"!==this._gestureIntent||(c.zoom=l.transform.scaleZoom(this._startScale*o)),l.stop(),this._drainInertiaBuffer(),this._inertia.push([Date.now(),o,i]),l.easeTo(c,{originalEvent:t})}else{var u=Math.abs(1-o)>.15;Math.abs(s)>4?this._gestureIntent="rotate":u&&(this._gestureIntent="zoom"),this._gestureIntent&&(this._startVec=a,this._startScale=l.transform.scale,this._startBearing=l.transform.bearing)}t.preventDefault()}},_onEnd:function(t){document.removeEventListener("touchmove",this._onMove),document.removeEventListener("touchend",this._onEnd),this._drainInertiaBuffer();var e=this._inertia,r=this._map;if(e.length<2)r.snapToNorth({},{originalEvent:t});else{var n=e[e.length-1],i=e[0],o=r.transform.scaleZoom(this._startScale*n[1]),s=r.transform.scaleZoom(this._startScale*i[1]),l=o-s,c=(n[0]-i[0])/1e3,u=n[2];if(0!==c&&o!==s){var f=.15*l/c;Math.abs(f)>2.5&&(f=f>0?2.5:-2.5);var h=1e3*Math.abs(f/(12*.15)),d=o+f*h/2e3;d<0&&(d=0),r.easeTo({zoom:d,duration:h,easing:a,around:r.unproject(u)},{originalEvent:t})}else r.snapToNorth({},{originalEvent:t})}},_drainInertiaBuffer:function(){for(var t=this._inertia,e=Date.now();t.length>2&&e-t[0][0]>160;)t.shift()}}},{"../../util/dom":400,"../../util/util":414}],392:[function(t,e,r){"use strict";e.exports=i;var n=t("../util/util");function i(){n.bindAll(["_onHashChange","_updateHash"],this)}i.prototype={addTo:function(t){return this._map=t,window.addEventListener("hashchange",this._onHashChange,!1),this._map.on("moveend",this._updateHash),this},remove:function(){return window.removeEventListener("hashchange",this._onHashChange,!1),this._map.off("moveend",this._updateHash),delete this._map,this},_onHashChange:function(){var t=location.hash.replace("#","").split("/");return t.length>=3&&(this._map.jumpTo({center:[+t[2],+t[1]],zoom:+t[0],bearing:+(t[3]||0)}),!0)},_updateHash:function(){var t=this._map.getCenter(),e=this._map.getZoom(),r=this._map.getBearing(),n=Math.max(0,Math.ceil(Math.log(e)/Math.LN2)),i="#"+Math.round(100*e)/100+"/"+t.lat.toFixed(n)+"/"+t.lng.toFixed(n)+(r?"/"+Math.round(10*r)/10:"");window.history.replaceState("","",i)}}},{"../util/util":414}],393:[function(t,e,r){"use strict";var n=t("../util/canvas"),i=t("../util/util"),a=t("../util/browser"),o=t("../util/browser").window,s=t("../util/evented"),l=t("../util/dom"),c=t("../style/style"),u=t("../style/animation_loop"),f=t("../render/painter"),h=t("../geo/transform"),d=t("./hash"),p=t("./bind_handlers"),m=t("./camera"),v=t("../geo/lng_lat"),g=t("../geo/lng_lat_bounds"),y=t("point-geometry"),b=t("./control/attribution"),x={center:[0,0],zoom:0,bearing:0,pitch:0,minZoom:0,maxZoom:20,interactive:!0,scrollZoom:!0,boxZoom:!0,dragRotate:!0,dragPan:!0,keyboard:!0,doubleClickZoom:!0,touchZoomRotate:!0,bearingSnap:7,hash:!1,attributionControl:!0,failIfMajorPerformanceCaveat:!1,preserveDrawingBuffer:!1,trackResize:!0,workerCount:Math.max(a.hardwareConcurrency-1,1)},_=e.exports=function(t){if((t=i.extend({},x,t)).workerCount<1)throw new Error("workerCount must an integer greater than or equal to 1.");this._interactive=t.interactive,this._failIfMajorPerformanceCaveat=t.failIfMajorPerformanceCaveat,this._preserveDrawingBuffer=t.preserveDrawingBuffer,this._trackResize=t.trackResize,this._workerCount=t.workerCount,this._bearingSnap=t.bearingSnap,"string"==typeof t.container?this._container=document.getElementById(t.container):this._container=t.container,this.animationLoop=new u,this.transform=new h(t.minZoom,t.maxZoom),t.maxBounds&&this.setMaxBounds(t.maxBounds),i.bindAll(["_forwardStyleEvent","_forwardSourceEvent","_forwardLayerEvent","_forwardTileEvent","_onStyleLoad","_onStyleChange","_onSourceAdd","_onSourceRemove","_onSourceUpdate","_onWindowOnline","_onWindowResize","_update","_render"],this),this._setupContainer(),this._setupPainter(),this.on("move",this._update.bind(this,!1)),this.on("zoom",this._update.bind(this,!0)),this.on("moveend",function(){this.animationLoop.set(300),this._rerender()}.bind(this)),void 0!==o&&(o.addEventListener("online",this._onWindowOnline,!1),o.addEventListener("resize",this._onWindowResize,!1)),p(this,t),this._hash=t.hash&&(new d).addTo(this),this._hash&&this._hash._onHashChange()||this.jumpTo({center:t.center,zoom:t.zoom,bearing:t.bearing,pitch:t.pitch}),this.stacks={},this._classes=[],this.resize(),t.classes&&this.setClasses(t.classes),t.style&&this.setStyle(t.style),t.attributionControl&&this.addControl(new b(t.attributionControl));var e=this.fire.bind(this,"error");this.on("style.error",e),this.on("source.error",e),this.on("tile.error",e),this.on("layer.error",e)};function w(t){t.parentNode&&t.parentNode.removeChild(t)}i.extend(_.prototype,s),i.extend(_.prototype,m.prototype),i.extend(_.prototype,{addControl:function(t){return t.addTo(this),this},addClass:function(t,e){return this._classes.indexOf(t)>=0||""===t?this:(this._classes.push(t),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},removeClass:function(t,e){var r=this._classes.indexOf(t);return r<0||""===t?this:(this._classes.splice(r,1),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0))},setClasses:function(t,e){for(var r={},n=0;n<t.length;n++)""!==t[n]&&(r[t[n]]=!0);return this._classes=Object.keys(r),this._classOptions=e,this.style&&this.style.updateClasses(),this._update(!0)},hasClass:function(t){return this._classes.indexOf(t)>=0},getClasses:function(){return this._classes},resize:function(){var t=0,e=0;return this._container&&(t=this._container.offsetWidth||400,e=this._container.offsetHeight||300),this._canvas.resize(t,e),this.transform.resize(t,e),this.painter.resize(t,e),this.fire("movestart").fire("move").fire("resize").fire("moveend")},getBounds:function(){var t=new g(this.transform.pointLocation(new y(0,0)),this.transform.pointLocation(this.transform.size));return(this.transform.angle||this.transform.pitch)&&(t.extend(this.transform.pointLocation(new y(this.transform.size.x,0))),t.extend(this.transform.pointLocation(new y(0,this.transform.size.y)))),t},setMaxBounds:function(t){if(t){var e=g.convert(t);this.transform.lngRange=[e.getWest(),e.getEast()],this.transform.latRange=[e.getSouth(),e.getNorth()],this.transform._constrain(),this._update()}else null!==t&&void 0!==t||(this.transform.lngRange=[],this.transform.latRange=[],this._update());return this},setMinZoom:function(t){if((t=null===t||void 0===t?0:t)>=0&&t<=this.transform.maxZoom)return this.transform.minZoom=t,this._update(),this.getZoom()<t&&this.setZoom(t),this;throw new Error("minZoom must be between 0 and the current maxZoom, inclusive")},setMaxZoom:function(t){if((t=null===t||void 0===t?20:t)>=this.transform.minZoom&&t<=20)return this.transform.maxZoom=t,this._update(),this.getZoom()>t&&this.setZoom(t),this;throw new Error("maxZoom must be between the current minZoom and 20, inclusive")},project:function(t){return this.transform.locationPoint(v.convert(t))},unproject:function(t){return this.transform.pointLocation(y.convert(t))},queryRenderedFeatures:function(){var t,e,r={};return 2===arguments.length?(t=arguments[0],r=arguments[1]):1===arguments.length&&((e=arguments[0])instanceof y||Array.isArray(e))?t=arguments[0]:1===arguments.length&&(r=arguments[0]),this.style.queryRenderedFeatures(this._makeQueryGeometry(t),r,this.transform.zoom,this.transform.angle)},_makeQueryGeometry:function(t){var e;if(void 0===t&&(t=[y.convert([0,0]),y.convert([this.transform.width,this.transform.height])]),t instanceof y||"number"==typeof t[0]){e=[y.convert(t)]}else{var r=[y.convert(t[0]),y.convert(t[1])];e=[r[0],new y(r[1].x,r[0].y),r[1],new y(r[0].x,r[1].y),r[0]]}return e=e.map(function(t){return this.transform.pointCoordinate(t)}.bind(this))},querySourceFeatures:function(t,e){return this.style.querySourceFeatures(t,e)},setStyle:function(t){return this.style&&(this.style.off("load",this._onStyleLoad).off("error",this._forwardStyleEvent).off("change",this._onStyleChange).off("source.add",this._onSourceAdd).off("source.remove",this._onSourceRemove).off("source.load",this._onSourceUpdate).off("source.error",this._forwardSourceEvent).off("source.change",this._onSourceUpdate).off("layer.add",this._forwardLayerEvent).off("layer.remove",this._forwardLayerEvent).off("layer.error",this._forwardLayerEvent).off("tile.add",this._forwardTileEvent).off("tile.remove",this._forwardTileEvent).off("tile.load",this._update).off("tile.error",this._forwardTileEvent).off("tile.stats",this._forwardTileEvent)._remove(),this.off("rotate",this.style._redoPlacement),this.off("pitch",this.style._redoPlacement)),t?(this.style=t instanceof c?t:new c(t,this.animationLoop,this._workerCount),this.style.on("load",this._onStyleLoad).on("error",this._forwardStyleEvent).on("change",this._onStyleChange).on("source.add",this._onSourceAdd).on("source.remove",this._onSourceRemove).on("source.load",this._onSourceUpdate).on("source.error",this._forwardSourceEvent).on("source.change",this._onSourceUpdate).on("layer.add",this._forwardLayerEvent).on("layer.remove",this._forwardLayerEvent).on("layer.error",this._forwardLayerEvent).on("tile.add",this._forwardTileEvent).on("tile.remove",this._forwardTileEvent).on("tile.load",this._update).on("tile.error",this._forwardTileEvent).on("tile.stats",this._forwardTileEvent),this.on("rotate",this.style._redoPlacement),this.on("pitch",this.style._redoPlacement),this):(this.style=null,this)},getStyle:function(){if(this.style)return this.style.serialize()},addSource:function(t,e){return this.style.addSource(t,e),this._update(!0),this},addSourceType:function(t,e,r){return this.style.addSourceType(t,e,r)},removeSource:function(t){return this.style.removeSource(t),this._update(!0),this},getSource:function(t){return this.style.getSource(t)},addLayer:function(t,e){return this.style.addLayer(t,e),this._update(!0),this},removeLayer:function(t){return this.style.removeLayer(t),this._update(!0),this},getLayer:function(t){return this.style.getLayer(t)},setFilter:function(t,e){return this.style.setFilter(t,e),this._update(!0),this},setLayerZoomRange:function(t,e,r){return this.style.setLayerZoomRange(t,e,r),this._update(!0),this},getFilter:function(t){return this.style.getFilter(t)},setPaintProperty:function(t,e,r,n){return this.style.setPaintProperty(t,e,r,n),this._update(!0),this},getPaintProperty:function(t,e,r){return this.style.getPaintProperty(t,e,r)},setLayoutProperty:function(t,e,r){return this.style.setLayoutProperty(t,e,r),this._update(!0),this},getLayoutProperty:function(t,e){return this.style.getLayoutProperty(t,e)},getContainer:function(){return this._container},getCanvasContainer:function(){return this._canvasContainer},getCanvas:function(){return this._canvas.getElement()},_setupContainer:function(){var t=this._container;t.classList.add("mapboxgl-map");var e=this._canvasContainer=l.create("div","mapboxgl-canvas-container",t);this._interactive&&e.classList.add("mapboxgl-interactive"),this._canvas=new n(this,e);var r=this._controlContainer=l.create("div","mapboxgl-control-container",t),i=this._controlCorners={};["top-left","top-right","bottom-left","bottom-right"].forEach(function(t){i[t]=l.create("div","mapboxgl-ctrl-"+t,r)})},_setupPainter:function(){var t=this._canvas.getWebGLContext({failIfMajorPerformanceCaveat:this._failIfMajorPerformanceCaveat,preserveDrawingBuffer:this._preserveDrawingBuffer});t?this.painter=new f(t,this.transform):this.fire("error",{error:new Error("Failed to initialize WebGL")})},_contextLost:function(t){t.preventDefault(),this._frameId&&a.cancelFrame(this._frameId),this.fire("webglcontextlost",{originalEvent:t})},_contextRestored:function(t){this._setupPainter(),this.resize(),this._update(),this.fire("webglcontextrestored",{originalEvent:t})},loaded:function(){return!this._styleDirty&&!this._sourcesDirty&&!(!this.style||!this.style.loaded())},_update:function(t){return this.style?(this._styleDirty=this._styleDirty||t,this._sourcesDirty=!0,this._rerender(),this):this},_render:function(){try{this.style&&this._styleDirty&&(this._styleDirty=!1,this.style.update(this._classes,this._classOptions),this._classOptions=null,this.style._recalculate(this.transform.zoom)),this.style&&this._sourcesDirty&&(this._sourcesDirty=!1,this.style._updateSources(this.transform)),this.painter.render(this.style,{debug:this.showTileBoundaries,showOverdrawInspector:this._showOverdrawInspector,vertices:this.vertices,rotating:this.rotating,zooming:this.zooming}),this.fire("render"),this.loaded()&&!this._loaded&&(this._loaded=!0,this.fire("load")),this._frameId=null,this.animationLoop.stopped()||(this._styleDirty=!0),(this._sourcesDirty||this._repaint||this._styleDirty)&&this._rerender()}catch(t){this.fire("error",{error:t})}return this},remove:function(){this._hash&&this._hash.remove(),a.cancelFrame(this._frameId),this.setStyle(null),void 0!==o&&o.removeEventListener("resize",this._onWindowResize,!1);var t=this.painter.gl.getExtension("WEBGL_lose_context");t&&t.loseContext(),w(this._canvasContainer),w(this._controlContainer),this._container.classList.remove("mapboxgl-map")},_rerender:function(){this.style&&!this._frameId&&(this._frameId=a.frame(this._render))},_forwardStyleEvent:function(t){this.fire("style."+t.type,i.extend({style:t.target},t))},_forwardSourceEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardLayerEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_forwardTileEvent:function(t){this.fire(t.type,i.extend({style:t.target},t))},_onStyleLoad:function(t){this.transform.unmodified&&this.jumpTo(this.style.stylesheet),this.style.update(this._classes,{transition:!1}),this._forwardStyleEvent(t)},_onStyleChange:function(t){this._update(!0),this._forwardStyleEvent(t)},_onSourceAdd:function(t){var e=t.source;e.onAdd&&e.onAdd(this),this._forwardSourceEvent(t)},_onSourceRemove:function(t){var e=t.source;e.onRemove&&e.onRemove(this),this._forwardSourceEvent(t)},_onSourceUpdate:function(t){this._update(),this._forwardSourceEvent(t)},_onWindowOnline:function(){this._update()},_onWindowResize:function(){this._trackResize&&this.stop().resize()._update()}}),i.extendAll(_.prototype,{_showTileBoundaries:!1,get showTileBoundaries(){return this._showTileBoundaries},set showTileBoundaries(t){this._showTileBoundaries!==t&&(this._showTileBoundaries=t,this._update())},_showCollisionBoxes:!1,get showCollisionBoxes(){return this._showCollisionBoxes},set showCollisionBoxes(t){this._showCollisionBoxes!==t&&(this._showCollisionBoxes=t,this.style._redoPlacement())},_showOverdrawInspector:!1,get showOverdrawInspector(){return this._showOverdrawInspector},set showOverdrawInspector(t){this._showOverdrawInspector!==t&&(this._showOverdrawInspector=t,this._update())},_repaint:!1,get repaint(){return this._repaint},set repaint(t){this._repaint=t,this._update()},_vertices:!1,get vertices(){return this._vertices},set vertices(t){this._vertices=t,this._update()}})},{"../geo/lng_lat":311,"../geo/lng_lat_bounds":312,"../geo/transform":313,"../render/painter":327,"../style/animation_loop":347,"../style/style":350,"../util/browser":398,"../util/canvas":399,"../util/dom":400,"../util/evented":406,"../util/util":414,"./bind_handlers":379,"./camera":380,"./control/attribution":381,"./hash":392,"point-geometry":458}],394:[function(t,e,r){"use strict";e.exports=o;var n=t("../util/dom"),i=t("../geo/lng_lat"),a=t("point-geometry");function o(t,e){t||(t=n.create("div")),t.classList.add("mapboxgl-marker"),this._el=t,this._offset=a.convert(e&&e.offset||[0,0]),this._update=this._update.bind(this)}o.prototype={addTo:function(t){return this.remove(),this._map=t,t.getCanvasContainer().appendChild(this._el),t.on("move",this._update),this._update(),this},remove:function(){this._map&&(this._map.off("move",this._update),this._map=null);var t=this._el.parentNode;return t&&t.removeChild(this._el),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=i.convert(t),this._update(),this},getElement:function(){return this._el},_update:function(){if(this._map){var t=this._map.project(this._lngLat)._add(this._offset);n.setTransform(this._el,"translate("+t.x+"px,"+t.y+"px)")}}}},{"../geo/lng_lat":311,"../util/dom":400,"point-geometry":458}],395:[function(t,e,r){"use strict";e.exports=s;var n=t("../util/util"),i=t("../util/evented"),a=t("../util/dom"),o=t("../geo/lng_lat");function s(t){n.setOptions(this,t),n.bindAll(["_update","_onClickClose"],this)}s.prototype=n.inherit(i,{options:{closeButton:!0,closeOnClick:!0},addTo:function(t){return this._map=t,this._map.on("move",this._update),this.options.closeOnClick&&this._map.on("click",this._onClickClose),this._update(),this},remove:function(){return this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._container&&(this._container.parentNode.removeChild(this._container),delete this._container),this._map&&(this._map.off("move",this._update),this._map.off("click",this._onClickClose),delete this._map),this.fire("close"),this},getLngLat:function(){return this._lngLat},setLngLat:function(t){return this._lngLat=o.convert(t),this._update(),this},setText:function(t){return this.setDOMContent(document.createTextNode(t))},setHTML:function(t){var e,r=document.createDocumentFragment(),n=document.createElement("body");for(n.innerHTML=t;e=n.firstChild;)r.appendChild(e);return this.setDOMContent(r)},setDOMContent:function(t){return this._createContent(),this._content.appendChild(t),this._update(),this},_createContent:function(){this._content&&this._content.parentNode&&this._content.parentNode.removeChild(this._content),this._content=a.create("div","mapboxgl-popup-content",this._container),this.options.closeButton&&(this._closeButton=a.create("button","mapboxgl-popup-close-button",this._content),this._closeButton.type="button",this._closeButton.innerHTML="&#215;",this._closeButton.addEventListener("click",this._onClickClose))},_update:function(){if(this._map&&this._lngLat&&this._content){this._container||(this._container=a.create("div","mapboxgl-popup",this._map.getContainer()),this._tip=a.create("div","mapboxgl-popup-tip",this._container),this._container.appendChild(this._content));var t=this._map.project(this._lngLat).round(),e=this.options.anchor;if(!e){var r=this._container.offsetWidth,n=this._container.offsetHeight;e=t.y<n?["top"]:t.y>this._map.transform.height-n?["bottom"]:[],t.x<r/2?e.push("left"):t.x>this._map.transform.width-r/2&&e.push("right"),e=0===e.length?"bottom":e.join("-")}var i={top:"translate(-50%,0)","top-left":"translate(0,0)","top-right":"translate(-100%,0)",bottom:"translate(-50%,-100%)","bottom-left":"translate(0,-100%)","bottom-right":"translate(-100%,-100%)",left:"translate(0,-50%)",right:"translate(-100%,-50%)"},o=this._container.classList;for(var s in i)o.remove("mapboxgl-popup-anchor-"+s);o.add("mapboxgl-popup-anchor-"+e),a.setTransform(this._container,i[e]+" translate("+t.x+"px,"+t.y+"px)")}},_onClickClose:function(){this.remove()}})},{"../geo/lng_lat":311,"../util/dom":400,"../util/evented":406,"../util/util":414}],396:[function(t,e,r){"use strict";function n(t,e){this.target=t,this.parent=e,this.callbacks={},this.callbackID=0,this.receive=this.receive.bind(this),this.target.addEventListener("message",this.receive,!1)}e.exports=n,n.prototype.receive=function(t){var e,r=t.data,n=r.id;if("<response>"===r.type)e=this.callbacks[r.id],delete this.callbacks[r.id],e&&e(r.error||null,r.data);else if(void 0!==r.id&&this.parent[r.type])this.parent[r.type](r.data,a.bind(this));else if(void 0!==r.id&&this.parent.workerSources){var i=r.type.split(".");this.parent.workerSources[i[0]][i[1]](r.data,a.bind(this))}else this.parent[r.type](r.data);function a(t,e,r){this.postMessage({type:"<response>",id:String(n),error:t?String(t):null,data:e},r)}},n.prototype.send=function(t,e,r,n){var i=null;r&&(this.callbacks[i=this.callbackID++]=r),this.postMessage({type:t,id:String(i),data:e},n)},n.prototype.postMessage=function(t,e){this.target.postMessage(t,e)}},{}],397:[function(t,e,r){"use strict";r.getJSON=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.setRequestHeader("Accept","application/json"),r.onerror=function(t){e(t)},r.onload=function(){if(r.status>=200&&r.status<300&&r.response){var t;try{t=JSON.parse(r.response)}catch(t){return e(t)}e(null,t)}else e(new Error(r.statusText))},r.send(),r},r.getArrayBuffer=function(t,e){var r=new XMLHttpRequest;return r.open("GET",t,!0),r.responseType="arraybuffer",r.onerror=function(t){e(t)},r.onload=function(){r.status>=200&&r.status<300&&r.response?e(null,r.response):e(new Error(r.statusText))},r.send(),r},r.getImage=function(t,e){return r.getArrayBuffer(t,function(t,r){if(t)return e(t);var n=new Image;n.onload=function(){e(null,n),(window.URL||window.webkitURL).revokeObjectURL(n.src)};var i=new Blob([new Uint8Array(r)],{type:"image/png"});return n.src=(window.URL||window.webkitURL).createObjectURL(i),n.getData=function(){var t=document.createElement("canvas"),e=t.getContext("2d");return t.width=n.width,t.height=n.height,e.drawImage(n,0,0),e.getImageData(0,0,n.width,n.height).data},n})},r.getVideo=function(t,e){var r,n,i=document.createElement("video");i.onloadstart=function(){e(null,i)};for(var a=0;a<t.length;a++){var o=document.createElement("source");r=t[a],n=void 0,(n=document.createElement("a")).href=r,(n.protocol!==document.location.protocol||n.host!==document.location.host)&&(i.crossOrigin="Anonymous"),o.src=t[a],i.appendChild(o)}return i.getData=function(){return i},i}},{}],398:[function(t,e,r){"use strict";r.window=window,e.exports.now=window.performance&&window.performance.now?window.performance.now.bind(window.performance):Date.now.bind(Date);var n=window.requestAnimationFrame||window.mozRequestAnimationFrame||window.webkitRequestAnimationFrame||window.msRequestAnimationFrame;r.frame=function(t){return n(t)};var i=window.cancelAnimationFrame||window.mozCancelAnimationFrame||window.webkitCancelAnimationFrame||window.msCancelAnimationFrame;r.cancelFrame=function(t){i(t)},r.timed=function(t,n,i){if(!n)return t.call(i,1),null;var a=!1,o=e.exports.now();return r.frame(function s(l){a||((l=e.exports.now())>=o+n?t.call(i,1):(t.call(i,(l-o)/n),r.frame(s)))}),function(){a=!0}},r.supported=t("mapbox-gl-supported"),r.hardwareConcurrency=navigator.hardwareConcurrency||4,Object.defineProperty(r,"devicePixelRatio",{get:function(){return window.devicePixelRatio}}),r.supportsWebp=!1;var a=document.createElement("img");a.onload=function(){r.supportsWebp=!0},a.src="data:image/webp;base64,UklGRh4AAABXRUJQVlA4TBEAAAAvAQAAAAfQ//73v/+BiOh/AAA=",r.supportsGeolocation=!!navigator.geolocation},{"mapbox-gl-supported":299}],399:[function(t,e,r){"use strict";var n=t("../util"),i=t("mapbox-gl-supported");function a(t,e){this.canvas=document.createElement("canvas"),t&&e&&(this.canvas.style.position="absolute",this.canvas.classList.add("mapboxgl-canvas"),this.canvas.addEventListener("webglcontextlost",t._contextLost.bind(t),!1),this.canvas.addEventListener("webglcontextrestored",t._contextRestored.bind(t),!1),this.canvas.setAttribute("tabindex",0),e.appendChild(this.canvas))}e.exports=a,a.prototype.resize=function(t,e){var r=window.devicePixelRatio||1;this.canvas.width=r*t,this.canvas.height=r*e,this.canvas.style.width=t+"px",this.canvas.style.height=e+"px"},a.prototype.getWebGLContext=function(t){return t=n.extend({},t,i.webGLContextAttributes),this.canvas.getContext("webgl",t)||this.canvas.getContext("experimental-webgl",t)},a.prototype.getElement=function(){return this.canvas}},{"../util":414,"mapbox-gl-supported":299}],400:[function(t,e,r){"use strict";var n=t("point-geometry");r.create=function(t,e,r){var n=document.createElement(t);return e&&(n.className=e),r&&r.appendChild(n),n};var i=document.documentElement.style;function a(t){for(var e=0;e<t.length;e++)if(t[e]in i)return t[e]}var o,s=a(["userSelect","MozUserSelect","WebkitUserSelect","msUserSelect"]);r.disableDrag=function(){s&&(o=i[s],i[s]="none")},r.enableDrag=function(){s&&(i[s]=o)};var l=a(["transform","WebkitTransform"]);function c(t){t.preventDefault(),t.stopPropagation(),window.removeEventListener("click",c,!0)}r.setTransform=function(t,e){t.style[l]=e},r.suppressClick=function(){window.addEventListener("click",c,!0),window.setTimeout(function(){window.removeEventListener("click",c,!0)},0)},r.mousePos=function(t,e){var r=t.getBoundingClientRect();return e=e.touches?e.touches[0]:e,new n(e.clientX-r.left-t.clientLeft,e.clientY-r.top-t.clientTop)},r.touchPos=function(t,e){for(var r=t.getBoundingClientRect(),i=[],a=0;a<e.touches.length;a++)i.push(new n(e.touches[a].clientX-r.left-t.clientLeft,e.touches[a].clientY-r.top-t.clientTop));return i}},{"point-geometry":458}],401:[function(t,e,r){"use strict";var n=t("webworkify");e.exports=function(){return new n(t("../../source/worker"))}},{"../../source/worker":345,webworkify:558}],402:[function(t,e,r){"use strict";var n=t("quickselect");function i(t,e){return e.area-t.area}function a(t){for(var e,r,n=0,i=0,a=t.length,o=a-1;i<a;o=i++)e=t[i],n+=((r=t[o]).x-e.x)*(e.y+r.y);return n}e.exports=function(t,e){var r=t.length;if(r<=1)return[t];for(var o,s,l=[],c=0;c<r;c++){var u=a(t[c]);0!==u&&(t[c].area=Math.abs(u),void 0===s&&(s=u<0),s===u<0?(o&&l.push(o),o=[t[c]]):o.push(t[c]))}if(o&&l.push(o),e>1)for(var f=0;f<l.length;f++)l[f].length<=e||(n(l[f],e,1,l[f].length-1,i),l[f]=l[f].slice(0,e));return l}},{quickselect:475}],403:[function(t,e,r){"use strict";e.exports={API_URL:"https://api.mapbox.com",REQUIRE_ACCESS_TOKEN:!0}},{}],404:[function(t,e,r){"use strict";var n=t("assert");function i(t){this._stringToNumber={},this._numberToString=[];for(var e=0;e<t.length;e++){var r=t[e];this._stringToNumber[r]=e,this._numberToString[e]=r}}e.exports=i,i.prototype.encode=function(t){return n(t in this._stringToNumber),this._stringToNumber[t]},i.prototype.decode=function(t){return n(t<this._numberToString.length),this._numberToString[t]}},{assert:51}],405:[function(t,e,r){"use strict";var n=t("./util"),i=t("./actor"),a=t("./web_worker");function o(t,e){this.actors=[],this.currentActor=0;for(var r=0;r<t;r++){var n=new a,o=new i(n,e);o.name="Worker "+r,this.actors.push(o)}}e.exports=o,o.prototype={broadcast:function(t,e,r){r=r||function(){},n.asyncAll(this.actors,function(r,n){r.send(t,e,n)},r)},send:function(t,e,r,n,i){return("number"!=typeof n||isNaN(n))&&(n=this.currentActor=(this.currentActor+1)%this.actors.length),this.actors[n].send(t,e,r,i),n},remove:function(){for(var t=0;t<this.actors.length;t++)this.actors[t].target.terminate();this.actors=[]}}},{"./actor":396,"./util":414,"./web_worker":401}],406:[function(t,e,r){"use strict";var n=t("./util"),i={on:function(t,e){return this._events=this._events||{},this._events[t]=this._events[t]||[],this._events[t].push(e),this},off:function(t,e){if(!t)return delete this._events,this;if(!this.listens(t))return this;if(e){var r=this._events[t].indexOf(e);r>=0&&this._events[t].splice(r,1),this._events[t].length||delete this._events[t]}else delete this._events[t];return this},once:function(t,e){var r=function(n){this.off(t,r),e.call(this,n)}.bind(this);return this.on(t,r),this},fire:function(t,e){if(!this.listens(t))return n.endsWith(t,"error")&&console.error(e&&e.error||e||"Empty error event"),this;e=n.extend({},e),n.extend(e,{type:t,target:this});for(var r=this._events[t].slice(),i=0;i<r.length;i++)r[i].call(this,e);return this},listens:function(t){return!(!this._events||!this._events[t])}};e.exports=i},{"./util":414}],407:[function(t,e,r){"use strict";function n(t,e,r){if(1===t){var n=r.readMessage(i,{glyphs:{}});e.push(n)}}function i(t,e,r){if(1===t)e.name=r.readString();else if(2===t)e.range=r.readString();else if(3===t){var n=r.readMessage(a,{});e.glyphs[n.id]=n}}function a(t,e,r){1===t?e.id=r.readVarint():2===t?e.bitmap=r.readBytes():3===t?e.width=r.readVarint():4===t?e.height=r.readVarint():5===t?e.left=r.readSVarint():6===t?e.top=r.readSVarint():7===t&&(e.advance=r.readVarint())}e.exports=function(t,e){this.stacks=t.readFields(n,[],e)}},{}],408:[function(t,e,r){"use strict";function n(t,e,r){return t*(1-r)+e*r}e.exports=n,n.number=n,n.vec2=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r)]},n.color=function(t,e,r){return[n(t[0],e[0],r),n(t[1],e[1],r),n(t[2],e[2],r),n(t[3],e[3],r)]},n.array=function(t,e,r){return t.map(function(t,i){return n(t,e[i],r)})}},{}],409:[function(t,e,r){"use strict";function n(t,e,r){if(t.length>1){if(i(t,e))return!0;for(var n=0;n<e.length;n++)if(s(e[n],t,r))return!0}for(var a=0;a<t.length;a++)if(s(t[a],e,r))return!0;return!1}function i(t,e){for(var r=0;r<t.length-1;r++)for(var n=t[r],i=t[r+1],a=0;a<e.length-1;a++){if(o(n,i,e[a],e[a+1]))return!0}return!1}function a(t,e,r){return(r.y-t.y)*(e.x-t.x)>(e.y-t.y)*(r.x-t.x)}function o(t,e,r,n){return a(t,r,n)!==a(e,r,n)&&a(t,e,r)!==a(t,e,n)}function s(t,e,r){var n=r*r;if(1===e.length)return t.distSqr(e[0])<n;for(var i=1;i<e.length;i++){if(l(t,e[i-1],e[i])<n)return!0}return!1}function l(t,e,r){var n=e.distSqr(r);if(0===n)return t.distSqr(e);var i=((t.x-e.x)*(r.x-e.x)+(t.y-e.y)*(r.y-e.y))/n;return i<0?t.distSqr(e):i>1?t.distSqr(r):t.distSqr(r.sub(e)._mult(i)._add(e))}function c(t,e){for(var r,n,i,a=!1,o=0;o<t.length;o++)for(var s=0,l=(r=t[o]).length-1;s<r.length;l=s++)n=r[s],i=r[l],n.y>e.y!=i.y>e.y&&e.x<(i.x-n.x)*(e.y-n.y)/(i.y-n.y)+n.x&&(a=!a);return a}function u(t,e){for(var r=!1,n=0,i=t.length-1;n<t.length;i=n++){var a=t[n],o=t[i];a.y>e.y!=o.y>e.y&&e.x<(o.x-a.x)*(e.y-a.y)/(o.y-a.y)+a.x&&(r=!r)}return r}e.exports={multiPolygonIntersectsBufferedMultiPoint:function(t,e,r){for(var n=0;n<t.length;n++)for(var i=t[n],a=0;a<e.length;a++)for(var o=e[a],l=0;l<o.length;l++){var c=o[l];if(u(i,c))return!0;if(s(c,i,r))return!0}return!1},multiPolygonIntersectsMultiPolygon:function(t,e){if(1===t.length&&1===t[0].length)return c(e,t[0][0]);for(var r=0;r<e.length;r++)for(var n=e[r],a=0;a<n.length;a++)if(c(t,n[a]))return!0;for(var o=0;o<t.length;o++){for(var s=t[o],l=0;l<s.length;l++)if(c(e,s[l]))return!0;for(var u=0;u<e.length;u++)if(i(s,e[u]))return!0}return!1},multiPolygonIntersectsBufferedMultiLine:function(t,e,r){for(var i=0;i<e.length;i++)for(var a=e[i],o=0;o<t.length;o++){var s=t[o];if(s.length>=3)for(var l=0;l<a.length;l++)if(u(s,a[l]))return!0;if(n(s,a,r))return!0}return!1}}},{}],410:[function(t,e,r){"use strict";function n(t,e){this.max=t,this.onRemove=e,this.reset()}e.exports=n,n.prototype.reset=function(){for(var t in this.data)this.onRemove(this.data[t]);return this.data={},this.order=[],this},n.prototype.add=function(t,e){if(this.has(t))this.order.splice(this.order.indexOf(t),1),this.data[t]=e,this.order.push(t);else if(this.data[t]=e,this.order.push(t),this.order.length>this.max){var r=this.get(this.order[0]);r&&this.onRemove(r)}return this},n.prototype.has=function(t){return t in this.data},n.prototype.keys=function(){return this.order},n.prototype.get=function(t){if(!this.has(t))return null;var e=this.data[t];return delete this.data[t],this.order.splice(this.order.indexOf(t),1),e},n.prototype.setMaxSize=function(t){for(this.max=t;this.order.length>this.max;){var e=this.get(this.order[0]);e&&this.onRemove(e)}return this}},{}],411:[function(t,e,r){"use strict";var n=t("./config"),i=t("./browser"),a=t("url"),o=t("./util");function s(t,e,r){if(!(r=r||n.ACCESS_TOKEN)&&n.REQUIRE_ACCESS_TOKEN)throw new Error("An API access token is required to use Mapbox GL. See https://www.mapbox.com/developers/api/#access-tokens");if(t=t.replace(/^mapbox:\/\//,n.API_URL+e),t+=-1!==t.indexOf("?")?"&access_token=":"?access_token=",n.REQUIRE_ACCESS_TOKEN){if("s"===r[0])throw new Error("Use a public access token (pk.*) with Mapbox GL JS, not a secret access token (sk.*). See https://www.mapbox.com/developers/api/#access-tokens");t+=r}return t}function l(t){return t?"?"+t:""}e.exports.normalizeStyleURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox:/"+r.pathname+l(r.query),"/styles/v1/",e)},e.exports.normalizeSourceURL=function(t,e){return"mapbox:"!==a.parse(t).protocol?t:s(t+".json","/v4/",e)+"&secure"},e.exports.normalizeGlyphsURL=function(t,e){var r=a.parse(t);return"mapbox:"!==r.protocol?t:s("mapbox://"+r.pathname.split("/")[1]+"/{fontstack}/{range}.pbf"+l(r.query),"/fonts/v1/",e)},e.exports.normalizeSpriteURL=function(t,e,r,n){var i=a.parse(t);return"mapbox:"!==i.protocol?(i.pathname+=e+r,a.format(i)):s("mapbox:/"+i.pathname+"/sprite"+e+r+l(i.query),"/styles/v1/",n)},e.exports.normalizeTileURL=function(t,e,r){var s=a.parse(t,!0);if(!e)return t;if("mapbox:"!==a.parse(e).protocol)return t;var l,c=i.supportsWebp?".webp":"$1",u=i.devicePixelRatio>=2||512===r?"@2x":"";return 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l=0,c=0;c<3;++c)l+=Math.pow(r[c]-e[c],2);this.radius.set(t,.5*Math.log(Math.max(l,1e-6))),this.center.set(t,r[0],r[1],r[2])},h.translate=function(t,e,r,n){this.center.move(t,e||0,r||0,n||0)},h.setMatrix=function(t,e){var r=this.computedRotation;s(r,e[0],e[1],e[2],e[4],e[5],e[6],e[8],e[9],e[10]),u(r,r),this.rotation.set(t,r[0],r[1],r[2],r[3]);var n=this.computedMatrix;o(n,e);var i=n[15];if(Math.abs(i)>1e-6){var a=n[12]/i,l=n[13]/i,c=n[14]/i;this.recalcMatrix(t);var f=Math.exp(this.computedRadius[0]);this.center.set(t,a-n[2]*f,l-n[6]*f,c-n[10]*f),this.radius.idle(t)}else this.center.idle(t),this.radius.idle(t)},h.setDistance=function(t,e){e>0&&this.radius.set(t,Math.log(e))},h.setDistanceLimits=function(t,e){t=t>0?Math.log(t):-1/0,e=e>0?Math.log(e):1/0,e=Math.max(e,t),this.radius.bounds[0][0]=t,this.radius.bounds[1][0]=e},h.getDistanceLimits=function(t){var e=this.radius.bounds;return 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translate, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\nuniform float miterLimit, dashLength, miterMode;\n\nvarying vec4 fragColor;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 tangent;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nconst float MAX_LINES = 256.;\nconst float REVERSE_THRESHOLD = -.875;\nconst float MIN_DIST = 1.;\n\n//TODO: possible optimizations: avoid overcalculating all for vertices and calc just one instead\n//TODO: precalculate dot products, normalize things beforehead etc.\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nbool isNaN( float val ){\n  return ( val < 0.0 || 0.0 < val || val == 0.0 ) ? false : true;\n}\n\nvoid main() {\n\tvec2 aCoord = aCoord, bCoord = bCoord, prevCoord = prevCoord, nextCoord = nextCoord;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineBot = 1. - lineTop;\n\tfloat depth = (MAX_LINES - 1. - id) / MAX_LINES;\n\n\tfragColor = (lineStart * aColor + lineEnd * bColor) / 255.;\n\n\tif (isNaN(aCoord.x) || isNaN(aCoord.y) || isNaN(bCoord.x) || isNaN(bCoord.y)) return;\n\n\tif (aCoord == prevCoord) prevCoord = aCoord + normalize(bCoord - aCoord);\n\tif (bCoord == nextCoord) nextCoord = bCoord - normalize(bCoord - aCoord);\n\n\tvec2 prevDiff = aCoord - prevCoord;\n\tvec2 currDiff = bCoord - aCoord;\n\tvec2 nextDiff = nextCoord - bCoord;\n\n\tvec2 prevDirection = normalize(prevDiff);\n\tvec2 currDirection = normalize(currDiff);\n\tvec2 nextDirection = normalize(nextDiff);\n\n\tvec2 prevTangent = normalize(prevDiff * scaleRatio);\n\tvec2 currTangent = normalize(currDiff * scaleRatio);\n\tvec2 nextTangent = normalize(nextDiff * scaleRatio);\n\n\tvec2 prevNormal = vec2(-prevTangent.y, prevTangent.x);\n\tvec2 currNormal = vec2(-currTangent.y, currTangent.x);\n\tvec2 nextNormal = vec2(-nextTangent.y, nextTangent.x);\n\n\tvec2 startJoinDirection = normalize(prevTangent - currTangent);\n\tvec2 endJoinDirection = normalize(currTangent - nextTangent);\n\n\t//collapsed/unidirectional segment cases\n\tif (prevDirection == currDirection) {\n\t\tstartJoinDirection = currNormal;\n\t}\n\tif (nextDirection == currDirection) {\n\t\tendJoinDirection = currNormal;\n\t}\n\tif (aCoord == bCoord) {\n\t\tendJoinDirection = startJoinDirection;\n\t\tcurrNormal = prevNormal;\n\t\tcurrTangent = prevTangent;\n\t}\n\n\ttangent = currTangent;\n\n\t//calculate join shifts relative to normals\n\tfloat startJoinShift = dot(currNormal, startJoinDirection);\n\tfloat endJoinShift = dot(currNormal, endJoinDirection);\n\n\tfloat startMiterRatio = abs(1. / startJoinShift);\n\tfloat endMiterRatio = abs(1. / endJoinShift);\n\n\tvec2 startJoin = startJoinDirection * startMiterRatio;\n\tvec2 endJoin = endJoinDirection * endMiterRatio;\n\n\tvec2 startTopJoin, startBotJoin, endTopJoin, endBotJoin;\n\tstartTopJoin = sign(startJoinShift) * startJoin * .5;\n\tstartBotJoin = -startTopJoin;\n\n\tendTopJoin = sign(endJoinShift) * endJoin * .5;\n\tendBotJoin = -endTopJoin;\n\n\tvec2 aTopCoord = aCoord + normalWidth * startTopJoin;\n\tvec2 bTopCoord = bCoord + normalWidth * endTopJoin;\n\tvec2 aBotCoord = aCoord + normalWidth * startBotJoin;\n\tvec2 bBotCoord = bCoord + normalWidth * endBotJoin;\n\n\t//miter anti-clipping\n\tfloat baClipping = distToLine(bCoord, aCoord, aBotCoord) / dot(normalize(normalWidth * endBotJoin), normalize(normalWidth.yx * vec2(-startBotJoin.y, startBotJoin.x)));\n\tfloat abClipping = distToLine(aCoord, bCoord, bTopCoord) / dot(normalize(normalWidth * startBotJoin), normalize(normalWidth.yx * vec2(-endBotJoin.y, endBotJoin.x)));\n\n\t//prevent close to reverse direction switch\n\tbool prevReverse = dot(currTangent, prevTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, prevNormal)) * min(length(prevDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\tbool nextReverse = dot(currTangent, nextTangent) <= REVERSE_THRESHOLD && abs(dot(currTangent, nextNormal)) * min(length(nextDiff), length(currDiff)) <  length(normalWidth * currNormal);\n\n\tif (prevReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * startJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / startMiterRatio, 1.);\n\t\taBotCoord = aCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\taTopCoord = aCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!nextReverse && baClipping > 0. && baClipping < length(normalWidth * endBotJoin)) {\n\t\t//handle miter clipping\n\t\tbTopCoord -= normalWidth * endTopJoin;\n\t\tbTopCoord += normalize(endTopJoin * normalWidth) * baClipping;\n\t}\n\n\tif (nextReverse) {\n\t\t//make join rectangular\n\t\tvec2 miterShift = normalWidth * endJoinDirection * miterLimit * .5;\n\t\tfloat normalAdjust = 1. - min(miterLimit / endMiterRatio, 1.);\n\t\tbBotCoord = bCoord + miterShift - normalAdjust * normalWidth * currNormal * .5;\n\t\tbTopCoord = bCoord + miterShift + normalAdjust * normalWidth * currNormal * .5;\n\t}\n\telse if (!prevReverse && abClipping > 0. && abClipping < length(normalWidth * startBotJoin)) {\n\t\t//handle miter clipping\n\t\taBotCoord -= normalWidth * startBotJoin;\n\t\taBotCoord += normalize(startBotJoin * normalWidth) * abClipping;\n\t}\n\n\tvec2 aTopPosition = (aTopCoord) * scale + translate;\n\tvec2 aBotPosition = (aBotCoord) * scale + translate;\n\n\tvec2 bTopPosition = (bTopCoord) * scale + translate;\n\tvec2 bBotPosition = (bBotCoord) * scale + translate;\n\n\t//position is normalized 0..1 coord on the screen\n\tvec2 position = (aTopPosition * lineTop + aBotPosition * lineBot) * lineStart + (bTopPosition * lineTop + bBotPosition * lineBot) * lineEnd;\n\n\tstartCoord = aCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\tendCoord = bCoord * scaleRatio + translate * viewport.zw + viewport.xy;\n\n\tgl_Position = vec4(position  * 2.0 - 1.0, depth, 1);\n\n\tenableStartMiter = step(dot(currTangent, prevTangent), .5);\n\tenableEndMiter = step(dot(currTangent, nextTangent), .5);\n\n\t//bevel miter cutoffs\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * miterLimit * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * miterLimit * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n\n\t//round miter cutoffs\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tvec2 startMiterWidth = vec2(startJoinDirection) * thickness * abs(dot(startJoinDirection, currNormal)) * .5;\n\t\t\tstartCutoff = vec4(aCoord, aCoord);\n\t\t\tstartCutoff.zw += vec2(-startJoinDirection.y, startJoinDirection.x) / scaleRatio;\n\t\t\tstartCutoff = startCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tstartCutoff += viewport.xyxy;\n\t\t\tstartCutoff += startMiterWidth.xyxy;\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tvec2 endMiterWidth = vec2(endJoinDirection) * thickness * abs(dot(endJoinDirection, currNormal)) * .5;\n\t\t\tendCutoff = vec4(bCoord, bCoord);\n\t\t\tendCutoff.zw += vec2(-endJoinDirection.y, endJoinDirection.x)  / scaleRatio;\n\t\t\tendCutoff = endCutoff * scaleRatio.xyxy + translate.xyxy * viewport.zwzw;\n\t\t\tendCutoff += viewport.xyxy;\n\t\t\tendCutoff += endMiterWidth.xyxy;\n\t\t}\n\t}\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id, miterMode;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\nvarying vec4 startCutoff, endCutoff;\nvarying vec2 startCoord, endCoord;\nvarying float enableStartMiter, enableEndMiter;\n\nfloat distToLine(vec2 p, vec2 a, vec2 b) {\n\tvec2 diff = b - a;\n\tvec2 perp = normalize(vec2(-diff.y, diff.x));\n\treturn dot(p - a, perp);\n}\n\nvoid main() {\n\tfloat alpha = 1., distToStart, distToEnd;\n\tfloat cutoff = thickness * .5;\n\n\t//bevel miter\n\tif (miterMode == 1.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToStart + 1., 0.), 1.);\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < -1.) {\n\t\t\t\tdiscard;\n\t\t\t\treturn;\n\t\t\t}\n\t\t\talpha *= min(max(distToEnd + 1., 0.), 1.);\n\t\t}\n\t}\n\n\t// round miter\n\telse if (miterMode == 2.) {\n\t\tif (enableStartMiter == 1.) {\n\t\t\tdistToStart = distToLine(gl_FragCoord.xy, startCutoff.xy, startCutoff.zw);\n\t\t\tif (distToStart < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - startCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\n\t\tif (enableEndMiter == 1.) {\n\t\t\tdistToEnd = distToLine(gl_FragCoord.xy, endCutoff.xy, endCutoff.zw);\n\t\t\tif (distToEnd < 0.) {\n\t\t\t\tfloat radius = length(gl_FragCoord.xy - endCoord);\n\n\t\t\t\tif(radius > cutoff + .5) {\n\t\t\t\t\tdiscard;\n\t\t\t\t\treturn;\n\t\t\t\t}\n\n\t\t\t\talpha -= smoothstep(cutoff - .5, cutoff + .5, radius);\n\t\t\t}\n\t\t}\n\t}\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * dash;\n}\n"]),attributes:{lineEnd:{buffer:v,divisor:0,stride:8,offset:0},lineTop:{buffer:v,divisor:0,stride:8,offset:4},aColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset},divisor:1},bColor:{buffer:m,stride:4,offset:function(t,e){return 4*e.offset+4},divisor:1},prevCoord:{buffer:g,stride:8,offset:function(t,e){return 8*e.offset},divisor:1},aCoord:{buffer:g,stride:8,offset:function(t,e){return 8+8*e.offset},divisor:1},bCoord:{buffer:g,stride:8,offset:function(t,e){return 16+8*e.offset},divisor:1},nextCoord:{buffer:g,stride:8,offset:function(t,e){return 24+8*e.offset},divisor:1}}},T)),d=t(a({vert:o(["precision highp float;\n#define GLSLIFY 1\n\nattribute vec2 aCoord, bCoord, aCoordFract, bCoordFract;\nattribute vec4 color;\nattribute float lineEnd, lineTop;\n\nuniform vec2 scale, scaleFract, translate, translateFract, scaleRatio;\nuniform float thickness, pixelRatio, id;\nuniform vec4 viewport;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nconst float MAX_LINES = 256.;\n\nvec2 project(vec2 position, vec2 positionFract, vec2 scale, vec2 scaleFract, vec2 translate, vec2 translateFract) {\n\t// the order is important\n\treturn position * scale + translate\n       + positionFract * scale + translateFract\n       + position * scaleFract\n       + positionFract * scaleFract;\n}\n\nvoid main() {\n\t// vec2 scaleRatio = scale * viewport.zw;\n\tvec2 normalWidth = thickness / scaleRatio;\n\n\tfloat lineStart = 1. - lineEnd;\n\tfloat lineOffset = lineTop * 2. - 1.;\n\tfloat depth = (MAX_LINES - 1. - id) / (MAX_LINES);\n\n\tvec2 diff = (bCoord + bCoordFract - aCoord - aCoordFract);\n\ttangent = normalize(diff * scaleRatio);\n\tvec2 normal = vec2(-tangent.y, tangent.x);\n\n\tvec2 position = project(aCoord, aCoordFract, scale, scaleFract, translate, translateFract) * lineStart\n\t\t+ project(bCoord, bCoordFract, scale, scaleFract, translate, translateFract) * lineEnd\n\n\t\t+ thickness * normal * .5 * lineOffset / viewport.zw;\n\n\tgl_Position = vec4(position * 2.0 - 1.0, depth, 1);\n\n\tfragColor = color / 255.;\n}\n"]),frag:o(["precision highp float;\n#define GLSLIFY 1\n\nuniform sampler2D dashPattern;\nuniform vec2 dashShape;\nuniform float dashLength, pixelRatio, thickness, opacity, id;\n\nvarying vec4 fragColor;\nvarying vec2 tangent;\n\nvoid main() {\n\tfloat alpha = 1.;\n\n\tfloat t = fract(dot(tangent, gl_FragCoord.xy) / dashLength) * .5 + .25;\n\tfloat dash = texture2D(dashPattern, vec2(t * dashLength * 2. / dashShape.x, (id + .5) / dashShape.y)).r;\n\n\tgl_FragColor = fragColor * dash;\n\tgl_FragColor.a *= alpha * opacity * 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n.baseCalendar,i(a.prototype,{name:"Mayan",jdEpoch:584282.5,hasYearZero:!0,minMonth:0,firstMonth:0,minDay:0,regionalOptions:{"":{name:"Mayan",epochs:["",""],monthNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],monthNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17"],dayNames:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesShort:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],dayNamesMin:["0","1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19"],digits:null,dateFormat:"YYYY.m.d",firstDay:0,isRTL:!1,haabMonths:["Pop","Uo","Zip","Zotz","Tzec","Xul","Yaxkin","Mol","Chen","Yax","Zac","Ceh","Mac","Kankin","Muan","Pax","Kayab","Cumku","Uayeb"],tzolkinMonths:["Imix","Ik","Akbal","Kan","Chicchan","Cimi","Manik","Lamat","Muluc","Oc","Chuen","Eb","Ben","Ix","Men","Cib","Caban","Etznab","Cauac","Ahau"]}},leapYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),!1},formatYear:function(t){t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year();var e=Math.floor(t/400);return t%=400,t+=t<0?400:0,e+"."+Math.floor(t/20)+"."+t%20},forYear:function(t){if((t=t.split(".")).length<3)throw"Invalid Mayan year";for(var e=0,r=0;r<t.length;r++){var n=parseInt(t[r],10);if(Math.abs(n)>19||r>0&&n<0)throw"Invalid Mayan year";e=20*e+n}return e},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),18},weekOfYear:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),0},daysInYear:function(t){return this._validate(t,this.minMonth,this.minDay,n.local.invalidYear),360},daysInMonth:function(t,e){return this._validate(t,e,this.minDay,n.local.invalidMonth),20},daysInWeek:function(){return 5},dayOfWeek:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate).day()},weekDay:function(t,e,r){return this._validate(t,e,r,n.local.invalidDate),!0},extraInfo:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate).toJD(),a=this._toHaab(i),o=this._toTzolkin(i);return{haabMonthName:this.local.haabMonths[a[0]-1],haabMonth:a[0],haabDay:a[1],tzolkinDayName:this.local.tzolkinMonths[o[0]-1],tzolkinDay:o[0],tzolkinTrecena:o[1]}},_toHaab:function(t){var e=o((t-=this.jdEpoch)+8+340,365);return[Math.floor(e/20)+1,o(e,20)]},_toTzolkin:function(t){return[s((t-=this.jdEpoch)+20,20),s(t+4,13)]},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);return i.day()+20*i.month()+360*i.year()+this.jdEpoch},fromJD:function(t){t=Math.floor(t)+.5-this.jdEpoch;var e=Math.floor(t/360);t%=360,t+=t<0?360:0;var r=Math.floor(t/20),n=t%20;return this.newDate(e,r,n)}}),n.calendars.mayan=a},{"../main":575,"object-assign":443}],569:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new 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n.add(1-(n.dayOfWeek()||7),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInMonth:function(t,e){var r=this._validate(t,e,this.minDay,n.local.invalidMonth);return this.daysPerMonth[r.month()-1]+(12===r.month()&&this.leapYear(r.year())?1:0)},weekDay:function(t,e,r){return(this.dayOfWeek(t,e,r)||7)<6},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidMonth);(t=i.year())<0&&t++;for(var a=i.day(),s=1;s<i.month();s++)a+=this.daysPerMonth[s-1];return a+o.toJD(t+1468,3,13)},fromJD:function(t){t=Math.floor(t+.5);for(var e=Math.floor((t-(this.jdEpoch-1))/366);t>=this.toJD(e+1,1,1);)e++;for(var r=t-Math.floor(this.toJD(e,1,1)+.5)+1,n=1;r>this.daysInMonth(e,n);)r-=this.daysInMonth(e,n),n++;return this.newDate(e,n,r)}}),n.calendars.nanakshahi=a},{"../main":575,"object-assign":443}],570:[function(t,e,r){var n=t("../main"),i=t("object-assign");function a(t){this.local=this.regionalOptions[t||""]||this.regionalOptions[""]}a.prototype=new n.baseCalendar,i(a.prototype,{name:"Nepali",jdEpoch:1700709.5,daysPerMonth:[31,31,32,32,31,30,30,29,30,29,30,30],hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,daysPerYear:365,regionalOptions:{"":{name:"Nepali",epochs:["BBS","ABS"],monthNames:["Baisakh","Jestha","Ashadh","Shrawan","Bhadra","Ashwin","Kartik","Mangsir","Paush","Mangh","Falgun","Chaitra"],monthNamesShort:["Bai","Je","As","Shra","Bha","Ash","Kar","Mang","Pau","Ma","Fal","Chai"],dayNames:["Aaitabaar","Sombaar","Manglbaar","Budhabaar","Bihibaar","Shukrabaar","Shanibaar"],dayNamesShort:["Aaita","Som","Mangl","Budha","Bihi","Shukra","Shani"],dayNamesMin:["Aai","So","Man","Bu","Bi","Shu","Sha"],digits:null,dateFormat:"dd/mm/yyyy",firstDay:1,isRTL:!1}},leapYear:function(t){return this.daysInYear(t)!==this.daysPerYear},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){if(t=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear).year(),void 0===this.NEPALI_CALENDAR_DATA[t])return this.daysPerYear;for(var e=0,r=this.minMonth;r<=12;r++)e+=this.NEPALI_CALENDAR_DATA[t][r];return e},daysInMonth:function(t,e){return t.year&&(e=t.month(),t=t.year()),this._validate(t,e,this.minDay,n.local.invalidMonth),void 0===this.NEPALI_CALENDAR_DATA[t]?this.daysPerMonth[e-1]:this.NEPALI_CALENDAR_DATA[t][e]},weekDay:function(t,e,r){return 6!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate);t=i.year(),e=i.month(),r=i.day();var a=n.instance(),o=0,s=e,l=t;this._createMissingCalendarData(t);var c=t-(s>9||9===s&&r>=this.NEPALI_CALENDAR_DATA[l][0]?56:57);for(9!==e&&(o=r,s--);9!==s;)s<=0&&(s=12,l--),o+=this.NEPALI_CALENDAR_DATA[l][s],s--;return 9===e?(o+=r-this.NEPALI_CALENDAR_DATA[l][0])<0&&(o+=a.daysInYear(c)):o+=this.NEPALI_CALENDAR_DATA[l][9]-this.NEPALI_CALENDAR_DATA[l][0],a.newDate(c,1,1).add(o,"d").toJD()},fromJD:function(t){var e=n.instance().fromJD(t),r=e.year(),i=e.dayOfYear(),a=r+56;this._createMissingCalendarData(a);for(var o=9,s=this.NEPALI_CALENDAR_DATA[a][0],l=this.NEPALI_CALENDAR_DATA[a][o]-s+1;i>l;)++o>12&&(o=1,a++),l+=this.NEPALI_CALENDAR_DATA[a][o];var c=this.NEPALI_CALENDAR_DATA[a][o]-(l-i);return this.newDate(a,o,c)},_createMissingCalendarData:function(t){var e=this.daysPerMonth.slice(0);e.unshift(17);for(var r=t-1;r<t+2;r++)void 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n.baseCalendar,i(a.prototype,{name:"UmmAlQura",hasYearZero:!1,minMonth:1,firstMonth:1,minDay:1,regionalOptions:{"":{name:"Umm al-Qura",epochs:["BH","AH"],monthNames:["Al-Muharram","Safar","Rabi' al-awwal","Rabi' Al-Thani","Jumada Al-Awwal","Jumada Al-Thani","Rajab","Sha'aban","Ramadan","Shawwal","Dhu al-Qi'dah","Dhu al-Hijjah"],monthNamesShort:["Muh","Saf","Rab1","Rab2","Jum1","Jum2","Raj","Sha'","Ram","Shaw","DhuQ","DhuH"],dayNames:["Yawm al-Ahad","Yawm al-Ithnain","Yawm al-Thal\u0101th\u0101\u2019","Yawm al-Arba\u2018\u0101\u2019","Yawm al-Kham\u012bs","Yawm al-Jum\u2018a","Yawm al-Sabt"],dayNamesMin:["Ah","Ith","Th","Ar","Kh","Ju","Sa"],digits:null,dateFormat:"yyyy/mm/dd",firstDay:6,isRTL:!0}},leapYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,n.local.invalidYear);return 355===this.daysInYear(e.year())},weekOfYear:function(t,e,r){var n=this.newDate(t,e,r);return n.add(-n.dayOfWeek(),"d"),Math.floor((n.dayOfYear()-1)/7)+1},daysInYear:function(t){for(var e=0,r=1;r<=12;r++)e+=this.daysInMonth(t,r);return e},daysInMonth:function(t,e){for(var r=this._validate(t,e,this.minDay,n.local.invalidMonth).toJD()-24e5+.5,i=0,a=0;a<o.length;a++){if(o[a]>r)return o[i]-o[i-1];i++}return 30},weekDay:function(t,e,r){return 5!==this.dayOfWeek(t,e,r)},toJD:function(t,e,r){var i=this._validate(t,e,r,n.local.invalidDate),a=12*(i.year()-1)+i.month()-15292;return i.day()+o[a-1]-1+24e5-.5},fromJD:function(t){for(var e=t-24e5+.5,r=0,n=0;n<o.length&&!(o[n]>e);n++)r++;var i=r+15292,a=Math.floor((i-1)/12),s=a+1,l=i-12*a,c=e-o[r-1]+1;return this.newDate(s,l,c)},isValid:function(t,e,r){var i=n.baseCalendar.prototype.isValid.apply(this,arguments);return i&&(i=(t=null!=t.year?t.year:t)>=1276&&t<=1500),i},_validate:function(t,e,r,i){var a=n.baseCalendar.prototype._validate.apply(this,arguments);if(a.year<1276||a.year>1500)throw i.replace(/\{0\}/,this.local.name);return a}}),n.calendars.ummalqura=a;var 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n=t("object-assign");function i(){this.regionalOptions=[],this.regionalOptions[""]={invalidCalendar:"Calendar {0} not found",invalidDate:"Invalid {0} date",invalidMonth:"Invalid {0} month",invalidYear:"Invalid {0} year",differentCalendars:"Cannot mix {0} and {1} dates"},this.local=this.regionalOptions[""],this.calendars={},this._localCals={}}function a(t,e,r,n){if(this._calendar=t,this._year=e,this._month=r,this._day=n,0===this._calendar._validateLevel&&!this._calendar.isValid(this._year,this._month,this._day))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name)}function o(t,e){return"000000".substring(0,e-(t=""+t).length)+t}function s(){this.shortYearCutoff="+10"}function l(t){this.local=this.regionalOptions[t]||this.regionalOptions[""]}n(i.prototype,{instance:function(t,e){t=(t||"gregorian").toLowerCase(),e=e||"";var r=this._localCals[t+"-"+e];if(!r&&this.calendars[t]&&(r=new this.calendars[t](e),this._localCals[t+"-"+e]=r),!r)throw(this.local.invalidCalendar||this.regionalOptions[""].invalidCalendar).replace(/\{0\}/,t);return r},newDate:function(t,e,r,n,i){return(n=(null!=t&&t.year?t.calendar():"string"==typeof n?this.instance(n,i):n)||this.instance()).newDate(t,e,r)},substituteDigits:function(t){return function(e){return(e+"").replace(/[0-9]/g,function(e){return t[e]})}},substituteChineseDigits:function(t,e){return function(r){for(var n="",i=0;r>0;){var a=r%10;n=(0===a?"":t[a]+e[i])+n,i++,r=Math.floor(r/10)}return 0===n.indexOf(t[1]+e[1])&&(n=n.substr(1)),n||t[0]}}}),n(a.prototype,{newDate:function(t,e,r){return this._calendar.newDate(null==t?this:t,e,r)},year:function(t){return 0===arguments.length?this._year:this.set(t,"y")},month:function(t){return 0===arguments.length?this._month:this.set(t,"m")},day:function(t){return 0===arguments.length?this._day:this.set(t,"d")},date:function(t,e,r){if(!this._calendar.isValid(t,e,r))throw(c.local.invalidDate||c.regionalOptions[""].invalidDate).replace(/\{0\}/,this._calendar.local.name);return this._year=t,this._month=e,this._day=r,this},leapYear:function(){return this._calendar.leapYear(this)},epoch:function(){return this._calendar.epoch(this)},formatYear:function(){return this._calendar.formatYear(this)},monthOfYear:function(){return this._calendar.monthOfYear(this)},weekOfYear:function(){return this._calendar.weekOfYear(this)},daysInYear:function(){return this._calendar.daysInYear(this)},dayOfYear:function(){return this._calendar.dayOfYear(this)},daysInMonth:function(){return this._calendar.daysInMonth(this)},dayOfWeek:function(){return this._calendar.dayOfWeek(this)},weekDay:function(){return this._calendar.weekDay(this)},extraInfo:function(){return this._calendar.extraInfo(this)},add:function(t,e){return this._calendar.add(this,t,e)},set:function(t,e){return this._calendar.set(this,t,e)},compareTo:function(t){if(this._calendar.name!==t._calendar.name)throw(c.local.differentCalendars||c.regionalOptions[""].differentCalendars).replace(/\{0\}/,this._calendar.local.name).replace(/\{1\}/,t._calendar.local.name);var e=this._year!==t._year?this._year-t._year:this._month!==t._month?this.monthOfYear()-t.monthOfYear():this._day-t._day;return 0===e?0:e<0?-1:1},calendar:function(){return this._calendar},toJD:function(){return this._calendar.toJD(this)},fromJD:function(t){return this._calendar.fromJD(t)},toJSDate:function(){return this._calendar.toJSDate(this)},fromJSDate:function(t){return this._calendar.fromJSDate(t)},toString:function(){return(this.year()<0?"-":"")+o(Math.abs(this.year()),4)+"-"+o(this.month(),2)+"-"+o(this.day(),2)}}),n(s.prototype,{_validateLevel:0,newDate:function(t,e,r){return null==t?this.today():(t.year&&(this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),r=t.day(),e=t.month(),t=t.year()),new a(this,t,e,r))},today:function(){return this.fromJSDate(new Date)},epoch:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear).year()<0?this.local.epochs[0]:this.local.epochs[1]},formatYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return(e.year()<0?"-":"")+o(Math.abs(e.year()),4)},monthsInYear:function(t){return this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear),12},monthOfYear:function(t,e){var r=this._validate(t,e,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth);return(r.month()+this.monthsInYear(r)-this.firstMonth)%this.monthsInYear(r)+this.minMonth},fromMonthOfYear:function(t,e){var r=(e+this.firstMonth-2*this.minMonth)%this.monthsInYear(t)+this.minMonth;return this._validate(t,r,this.minDay,c.local.invalidMonth||c.regionalOptions[""].invalidMonth),r},daysInYear:function(t){var e=this._validate(t,this.minMonth,this.minDay,c.local.invalidYear||c.regionalOptions[""].invalidYear);return this.leapYear(e)?366:365},dayOfYear:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return n.toJD()-this.newDate(n.year(),this.fromMonthOfYear(n.year(),this.minMonth),this.minDay).toJD()+1},daysInWeek:function(){return 7},dayOfWeek:function(t,e,r){var n=this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate);return(Math.floor(this.toJD(n))+2)%this.daysInWeek()},extraInfo:function(t,e,r){return this._validate(t,e,r,c.local.invalidDate||c.regionalOptions[""].invalidDate),{}},add:function(t,e,r){return this._validate(t,this.minMonth,this.minDay,c.local.invalidDate||c.regionalOptions[""].invalidDate),this._correctAdd(t,this._add(t,e,r),e,r)},_add:function(t,e,r){if(this._validateLevel++,"d"===r||"w"===r){var n=t.toJD()+e*("w"===r?this.daysInWeek():1),i=t.calendar().fromJD(n);return this._validateLevel--,[i.year(),i.month(),i.day()]}try{var a=t.year()+("y"===r?e:0),o=t.monthOfYear()+("m"===r?e:0);i=t.day();"y"===r?(t.month()!==this.fromMonthOfYear(a,o)&&(o=this.newDate(a,t.month(),this.minDay).monthOfYear()),o=Math.min(o,this.monthsInYear(a)),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o)))):"m"===r&&(!function(t){for(;o<t.minMonth;)a--,o+=t.monthsInYear(a);for(var e=t.monthsInYear(a);o>e-1+t.minMonth;)a++,o-=e,e=t.monthsInYear(a)}(this),i=Math.min(i,this.daysInMonth(a,this.fromMonthOfYear(a,o))));var s=[a,this.fromMonthOfYear(a,o),i];return this._validateLevel--,s}catch(t){throw 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r,n,a,o,s=i.getFromId(t,e.xref),l=i.getFromId(t,e.yref),c=3*e.arrowsize*e.arrowwidth||0,u=3*e.startarrowsize*e.arrowwidth||0;s&&s.autorange&&(r=c+e.xshift,n=c-e.xshift,a=u+e.xshift,o=u-e.xshift,e.axref===e.xref?(i.expand(s,[s.r2c(e.x)],{ppadplus:r,ppadminus:n}),i.expand(s,[s.r2c(e.ax)],{ppadplus:Math.max(e._xpadplus,a),ppadminus:Math.max(e._xpadminus,o)})):(a=e.ax?a+e.ax:a,o=e.ax?o-e.ax:o,i.expand(s,[s.r2c(e.x)],{ppadplus:Math.max(e._xpadplus,r,a),ppadminus:Math.max(e._xpadminus,n,o)}))),l&&l.autorange&&(r=c-e.yshift,n=c+e.yshift,a=u-e.yshift,o=u+e.yshift,e.ayref===e.yref?(i.expand(l,[l.r2c(e.y)],{ppadplus:r,ppadminus:n}),i.expand(l,[l.r2c(e.ay)],{ppadplus:Math.max(e._ypadplus,a),ppadminus:Math.max(e._ypadminus,o)})):(a=e.ay?a+e.ay:a,o=e.ay?o-e.ay:o,i.expand(l,[l.r2c(e.y)],{ppadplus:Math.max(e._ypadplus,r,a),ppadminus:Math.max(e._ypadminus,n,o)})))})}e.exports=function(t){var e=t._fullLayout,r=n.filterVisible(e.annotations);if(r.length&&t._fullData.length){var s={};for(var l in r.forEach(function(t){s[t.xref]=1,s[t.yref]=1}),s){var c=i.getFromId(t,l);if(c&&c.autorange)return n.syncOrAsync([a,o],t)}}}},{"../../lib":724,"../../plots/cartesian/axes":770,"./draw":587}],583:[function(t,e,r){"use strict";var n=t("../../plotly");function i(t,e){var r,n,i,o,s,l,c,u=t._fullLayout.annotations,f=[],h=[],d=[],p=(e||[]).length;for(r=0;r<u.length;r++)if(o=(i=u[r]).clicktoshow){for(n=0;n<p;n++)if(l=(s=e[n]).xaxis,c=s.yaxis,l._id===i.xref&&c._id===i.yref&&l.d2r(s.x)===a(i._xclick,l)&&c.d2r(s.y)===a(i._yclick,c)){(i.visible?"onout"===o?h:d:f).push(r);break}n===p&&i.visible&&"onout"===o&&h.push(r)}return{on:f,off:h,explicitOff:d}}function a(t,e){return"log"===e.type?e.l2r(t):e.d2r(t)}e.exports={hasClickToShow:function(t,e){var r=i(t,e);return r.on.length>0||r.explicitOff.length>0},onClick:function(t,e){var r,a=i(t,e),o=a.on,s=a.off.concat(a.explicitOff),l={};if(!o.length&&!s.length)return;for(r=0;r<o.length;r++)l["annotations["+o[r]+"].visible"]=!0;for(r=0;r<s.length;r++)l["annotations["+s[r]+"].visible"]=!1;return n.update(t,{},l)}}},{"../../plotly":765}],584:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../color");e.exports=function(t,e,r,a){a("opacity");var o=a("bgcolor"),s=a("bordercolor"),l=i.opacity(s);a("borderpad");var c=a("borderwidth"),u=a("showarrow");if(a("text",u?" ":r._dfltTitle.annotation),a("textangle"),n.coerceFont(a,"font",r.font),a("width"),a("align"),a("height")&&a("valign"),u){var f,h,d=a("arrowside");-1!==d.indexOf("end")&&(f=a("arrowhead"),h=a("arrowsize")),-1!==d.indexOf("start")&&(a("startarrowhead",f),a("startarrowsize",h)),a("arrowcolor",l?e.bordercolor:i.defaultLine),a("arrowwidth",2*(l&&c||1)),a("standoff"),a("startstandoff")}var p=a("hovertext"),m=r.hoverlabel||{};if(p){var v=a("hoverlabel.bgcolor",m.bgcolor||(i.opacity(o)?i.rgb(o):i.defaultLine)),g=a("hoverlabel.bordercolor",m.bordercolor||i.contrast(v));n.coerceFont(a,"hoverlabel.font",{family:m.font.family,size:m.font.size,color:m.font.color||g})}a("captureevents",!!p)}},{"../../lib":724,"../color":598}],585:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib/to_log_range");e.exports=function(t,e,r,a){e=e||{};var o="log"===r&&"linear"===e.type,s="linear"===r&&"log"===e.type;if(o||s)for(var l,c,u=t._fullLayout.annotations,f=e._id.charAt(0),h=0;h<u.length;h++)l=u[h],c="annotations["+h+"].",l[f+"ref"]===e._id&&d(f),l["a"+f+"ref"]===e._id&&d("a"+f);function d(t){var r=l[t],s=null;s=o?i(r,e.range):Math.pow(10,r),n(s)||(s=null),a(c+t,s)}}},{"../../lib/to_log_range":749,"fast-isnumeric":140}],586:[function(t,e,r){"use strict";var n=t("../../plots/array_container_defaults"),i=t("./annotation_defaults");e.exports=function(t,e){n(t,e,{name:"annotations",handleItemDefaults:i})}},{"../../plots/array_container_defaults":767,"./annotation_defaults":579}],587:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../plotly"),a=t("../../plots/plots"),o=t("../../lib"),s=t("../../plots/cartesian/axes"),l=t("../color"),c=t("../drawing"),u=t("../fx"),f=t("../../lib/svg_text_utils"),h=t("../../lib/setcursor"),d=t("../dragelement"),p=t("./draw_arrow_head");function m(t,e){var r=t._fullLayout.annotations[e]||{};v(t,r,e,!1,s.getFromId(t,r.xref),s.getFromId(t,r.yref))}function v(t,e,r,a,s,m){var v,g,y=t._fullLayout,b=t._fullLayout._size,x=t._context.edits;a?(v="annotation-"+a,g=a+".annotations["+r+"]"):(v="annotation",g="annotations["+r+"]"),y._infolayer.selectAll("."+v+'[data-index="'+r+'"]').remove();var _="clip"+y._uid+"_ann"+r;if(e._input&&!1!==e.visible){var w={x:{},y:{}},M=+e.textangle||0,k=y._infolayer.append("g").classed(v,!0).attr("data-index",String(r)).style("opacity",e.opacity),A=k.append("g").classed("annotation-text-g",!0),T=x[e.showarrow?"annotationTail":"annotationPosition"],E=e.captureevents||x.annotationText||T,S=A.append("g").style("pointer-events",E?"all":null).call(h,"default").on("click",function(){t._dragging=!1;var i={index:r,annotation:e._input,fullAnnotation:e,event:n.event};a&&(i.subplotId=a),t.emit("plotly_clickannotation",i)});e.hovertext&&S.on("mouseover",function(){var r=e.hoverlabel,n=r.font,i=this.getBoundingClientRect(),a=t.getBoundingClientRect();u.loneHover({x0:i.left-a.left,x1:i.right-a.left,y:(i.top+i.bottom)/2-a.top,text:e.hovertext,color:r.bgcolor,borderColor:r.bordercolor,fontFamily:n.family,fontSize:n.size,fontColor:n.color},{container:y._hoverlayer.node(),outerContainer:y._paper.node(),gd:t})}).on("mouseout",function(){u.loneUnhover(y._hoverlayer.node())});var L=e.borderwidth,C=e.borderpad,P=L+C,z=S.append("rect").attr("class","bg").style("stroke-width",L+"px").call(l.stroke,e.bordercolor).call(l.fill,e.bgcolor),O=e.width||e.height,D=y._topclips.selectAll("#"+_).data(O?[0]:[]);D.enter().append("clipPath").classed("annclip",!0).attr("id",_).append("rect"),D.exit().remove();var I=e.font,R=S.append("text").classed("annotation-text",!0).text(e.text);x.annotationText?R.call(f.makeEditable,{delegate:S,gd:t}).call(N).on("edit",function(r){e.text=r,this.call(N);var n={};n[g+".text"]=e.text,s&&s.autorange&&(n[s._name+".autorange"]=!0),m&&m.autorange&&(n[m._name+".autorange"]=!0),i.relayout(t,n)}):R.call(N)}else n.selectAll("#"+_).remove();function N(r){return r.call(c.font,I).attr({"text-anchor":{left:"start",right:"end"}[e.align]||"middle"}),f.convertToTspans(r,t,F),r}function F(){var r=R.selectAll("a");1===r.size()&&r.text()===R.text()&&S.insert("a",":first-child").attr({"xlink:xlink:href":r.attr("xlink:href"),"xlink:xlink:show":r.attr("xlink:show")}).style({cursor:"pointer"}).node().appendChild(z.node());var n=S.select(".annotation-text-math-group"),u=!n.empty(),v=c.bBox((u?n:R).node()),E=v.width,C=v.height,I=e.width||E,N=e.height||C,F=Math.round(I+2*P),j=Math.round(N+2*P);function B(t,e){return"auto"===e&&(e=t<1/3?"left":t>2/3?"right":"center"),{center:0,middle:0,left:.5,bottom:-.5,right:-.5,top:.5}[e]}e._w=I,e._h=N;for(var U=!1,V=["x","y"],q=0;q<V.length;q++){var H,G,Y,W,X,Z=V[q],J=e[Z+"ref"]||Z,K=e["a"+Z+"ref"],Q={x:s,y:m}[Z],$=(M+("x"===Z?0:-90))*Math.PI/180,tt=F*Math.cos($),et=j*Math.sin($),rt=Math.abs(tt)+Math.abs(et),nt=e[Z+"anchor"],it=e[Z+"shift"]*("x"===Z?1:-1),at=w[Z];if(Q){var ot=Q.r2fraction(e[Z]);if((t._dragging||!Q.autorange)&&(ot<0||ot>1)&&(K===J?((ot=Q.r2fraction(e["a"+Z]))<0||ot>1)&&(U=!0):U=!0,U))continue;H=Q._offset+Q.r2p(e[Z]),W=.5}else"x"===Z?(Y=e[Z],H=b.l+b.w*Y):(Y=1-e[Z],H=b.t+b.h*Y),W=e.showarrow?.5:Y;if(e.showarrow){at.head=H;var st=e["a"+Z];X=tt*B(.5,e.xanchor)-et*B(.5,e.yanchor),K===J?(at.tail=Q._offset+Q.r2p(st),G=X):(at.tail=H+st,G=X+st),at.text=at.tail+X;var lt=y["x"===Z?"width":"height"];if("paper"===J&&(at.head=o.constrain(at.head,1,lt-1)),"pixel"===K){var ct=-Math.max(at.tail-3,at.text),ut=Math.min(at.tail+3,at.text)-lt;ct>0?(at.tail+=ct,at.text+=ct):ut>0&&(at.tail-=ut,at.text-=ut)}at.tail+=it,at.head+=it}else G=X=rt*B(W,nt),at.text=H+X;at.text+=it,X+=it,G+=it,e["_"+Z+"padplus"]=rt/2+G,e["_"+Z+"padminus"]=rt/2-G,e["_"+Z+"size"]=rt,e["_"+Z+"shift"]=X}if(U)S.remove();else{var ft=0,ht=0;if("left"!==e.align&&(ft=(I-E)*("center"===e.align?.5:1)),"top"!==e.valign&&(ht=(N-C)*("middle"===e.valign?.5:1)),u)n.select("svg").attr({x:P+ft-1,y:P+ht}).call(c.setClipUrl,O?_:null);else{var dt=P+ht-v.top,pt=P+ft-v.left;R.call(f.positionText,pt,dt).call(c.setClipUrl,O?_:null)}D.select("rect").call(c.setRect,P,P,I,N),z.call(c.setRect,L/2,L/2,F-L,j-L),S.call(c.setTranslate,Math.round(w.x.text-F/2),Math.round(w.y.text-j/2)),A.attr({transform:"rotate("+M+","+w.x.text+","+w.y.text+")"});var mt,vt,gt=function(r,n){k.selectAll(".annotation-arrow-g").remove();var u=w.x.head,f=w.y.head,h=w.x.tail+r,v=w.y.tail+n,y=w.x.text+r,_=w.y.text+n,T=o.rotationXYMatrix(M,y,_),E=o.apply2DTransform(T),L=o.apply2DTransform2(T),C=+z.attr("width"),P=+z.attr("height"),O=y-.5*C,D=O+C,I=_-.5*P,R=I+P,N=[[O,I,O,R],[O,R,D,R],[D,R,D,I],[D,I,O,I]].map(L);if(!N.reduce(function(t,e){return t^!!o.segmentsIntersect(u,f,u+1e6,f+1e6,e[0],e[1],e[2],e[3])},!1)){N.forEach(function(t){var e=o.segmentsIntersect(h,v,u,f,t[0],t[1],t[2],t[3]);e&&(h=e.x,v=e.y)});var F=e.arrowwidth,j=e.arrowcolor,B=e.arrowside,U=k.append("g").style({opacity:l.opacity(j)}).classed("annotation-arrow-g",!0),V=U.append("path").attr("d","M"+h+","+v+"L"+u+","+f).style("stroke-width",F+"px").call(l.stroke,l.rgb(j));if(p(V,B,e),x.annotationPosition&&V.node().parentNode&&!a){var q=u,H=f;if(e.standoff){var G=Math.sqrt(Math.pow(u-h,2)+Math.pow(f-v,2));q+=e.standoff*(h-u)/G,H+=e.standoff*(v-f)/G}var Y,W,X,Z=U.append("path").classed("annotation-arrow",!0).classed("anndrag",!0).attr({d:"M3,3H-3V-3H3ZM0,0L"+(h-q)+","+(v-H),transform:"translate("+q+","+H+")"}).style("stroke-width",F+6+"px").call(l.stroke,"rgba(0,0,0,0)").call(l.fill,"rgba(0,0,0,0)");d.init({element:Z.node(),gd:t,prepFn:function(){var t=c.getTranslate(S);W=t.x,X=t.y,Y={},s&&s.autorange&&(Y[s._name+".autorange"]=!0),m&&m.autorange&&(Y[m._name+".autorange"]=!0)},moveFn:function(t,r){var n=E(W,X),i=n[0]+t,a=n[1]+r;S.call(c.setTranslate,i,a),Y[g+".x"]=s?s.p2r(s.r2p(e.x)+t):e.x+t/b.w,Y[g+".y"]=m?m.p2r(m.r2p(e.y)+r):e.y-r/b.h,e.axref===e.xref&&(Y[g+".ax"]=s.p2r(s.r2p(e.ax)+t)),e.ayref===e.yref&&(Y[g+".ay"]=m.p2r(m.r2p(e.ay)+r)),U.attr("transform","translate("+t+","+r+")"),A.attr({transform:"rotate("+M+","+i+","+a+")"})},doneFn:function(){i.relayout(t,Y);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}};if(e.showarrow&&gt(0,0),T)d.init({element:S.node(),gd:t,prepFn:function(){vt=A.attr("transform"),mt={}},moveFn:function(t,r){var n="pointer";if(e.showarrow)e.axref===e.xref?mt[g+".ax"]=s.p2r(s.r2p(e.ax)+t):mt[g+".ax"]=e.ax+t,e.ayref===e.yref?mt[g+".ay"]=m.p2r(m.r2p(e.ay)+r):mt[g+".ay"]=e.ay+r,gt(t,r);else{if(a)return;if(s)mt[g+".x"]=e.x+t/s._m;else{var i=e._xsize/b.w,o=e.x+(e._xshift-e.xshift)/b.w-i/2;mt[g+".x"]=d.align(o+t/b.w,i,0,1,e.xanchor)}if(m)mt[g+".y"]=e.y+r/m._m;else{var l=e._ysize/b.h,c=e.y-(e._yshift+e.yshift)/b.h-l/2;mt[g+".y"]=d.align(c-r/b.h,l,0,1,e.yanchor)}s&&m||(n=d.getCursor(s?.5:mt[g+".x"],m?.5:mt[g+".y"],e.xanchor,e.yanchor))}A.attr({transform:"translate("+t+","+r+")"+vt}),h(S,n)},doneFn:function(){h(S),i.relayout(t,mt);var e=document.querySelector(".js-notes-box-panel");e&&e.redraw(e.selectedObj)}})}}}e.exports={draw:function(t){var e=t._fullLayout;e._infolayer.selectAll(".annotation").remove();for(var r=0;r<e.annotations.length;r++)e.annotations[r].visible&&m(t,r);return a.previousPromises(t)},drawOne:m,drawRaw:v}},{"../../lib":724,"../../lib/setcursor":743,"../../lib/svg_text_utils":747,"../../plotly":765,"../../plots/cartesian/axes":770,"../../plots/plots":833,"../color":598,"../dragelement":620,"../drawing":623,"../fx":640,"./draw_arrow_head":588,d3:128}],588:[function(t,e,r){"use strict";var n=t("d3"),i=t("../color"),a=t("./arrow_paths");e.exports=function(t,e,r){var o,s,l,c,u=t.node(),f=a[r.arrowhead||0],h=a[r.startarrowhead||0],d=(r.arrowwidth||1)*(r.arrowsize||1),p=(r.arrowwidth||1)*(r.startarrowsize||1),m=e.indexOf("start")>=0,v=e.indexOf("end")>=0,g=f.backoff*d+r.standoff,y=h.backoff*p+r.startstandoff;if("line"===u.nodeName){o={x:+t.attr("x1"),y:+t.attr("y1")},s={x:+t.attr("x2"),y:+t.attr("y2")};var b=o.x-s.x,x=o.y-s.y;if(c=(l=Math.atan2(x,b))+Math.PI,g&&y&&g+y>Math.sqrt(b*b+x*x))return void 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mt={fullLayout:u,container:u._hoverlayer,outerContainer:u._paperdiv,event:e},vt=t._spikepoints,gt={vLinePoint:K.vLinePoint,hLinePoint:K.hLinePoint};if(t._spikepoints=gt,u._has("cartesian")&&0!==X&&0!==Z.length){var yt=Z.filter(function(t){return t.ya.showspikes}),bt=dt(yt,X);K.hLinePoint=pt(bt);var xt=Z.filter(function(t){return t.xa.showspikes}),_t=dt(xt,X);K.vLinePoint=pt(_t)}if(0===Z.length){var wt=h.unhoverRaw(t,e);return!u._has("cartesian")||null===K.hLinePoint&&null===K.vLinePoint||S(vt)&&E(K,mt),wt}u._has("cartesian")&&S(vt)&&E(K,mt);Z.sort(function(t,e){return t.distance-e.distance});var Mt=t._hoverdata,kt=[];for(R=0;R<Z.length;R++){var At=Z[R];kt.push(m.makeEventData(At,At.trace,At.cd))}t._hoverdata=kt;var Tt="y"===O&&J.length>1,Et=f.combine(u.plot_bgcolor||f.background,u.paper_bgcolor),St={hovermode:O,rotateLabels:Tt,bgColor:Et,container:u._hoverlayer,outerContainer:u._paperdiv,commonLabelOpts:u.hoverlabel,hoverdistance:u.hoverdistance},Lt=k(Z,St,t);if(function(t,e,r){var n,i,a,o,s,l,c,u=0,f=t.map(function(t,n){var i=t[e];return[{i:n,dp:0,pos:t.pos,posref:t.posref,size:t.by*("x"===i._id.charAt(0)?b:1)/2,pmin:0,pmax:"x"===i._id.charAt(0)?r.width:r.height}]}).sort(function(t,e){return t[0].posref-e[0].posref});function h(t){var e=t[0],r=t[t.length-1];if(i=e.pmin-e.pos-e.dp+e.size,a=r.pos+r.dp+r.size-e.pmax,i>.01){for(s=t.length-1;s>=0;s--)t[s].dp+=i;n=!1}if(!(a<.01)){if(i<-.01){for(s=t.length-1;s>=0;s--)t[s].dp-=a;n=!1}if(n){var c=0;for(o=0;o<t.length;o++)(l=t[o]).pos+l.dp+l.size>e.pmax&&c++;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos>e.pmax-1&&(l.del=!0,c--);for(o=0;o<t.length&&!(c<=0);o++)if((l=t[o]).pos<e.pmin+1)for(l.del=!0,c--,a=2*l.size,s=t.length-1;s>=0;s--)t[s].dp-=a;for(o=t.length-1;o>=0&&!(c<=0);o--)(l=t[o]).pos+l.dp+l.size>e.pmax&&(l.del=!0,c--)}}}for(;!n&&u<=t.length;){for(u++,n=!0,o=0;o<f.length-1;){var 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i=r[n],a=t._hoverdata[n];if(i.curveNumber!==a.curveNumber||String(i.pointNumber)!==String(a.pointNumber))return!0}return!1}(t,0,Mt))return;Mt&&t.emit("plotly_unhover",{event:e,points:Mt});t.emit("plotly_hover",{event:e,points:t._hoverdata,xaxes:_,yaxes:w,xvals:D,yvals:I})}(t,e,r,a)})},r.loneHover=function(t,e){var r={color:t.color||f.defaultLine,x0:t.x0||t.x||0,x1:t.x1||t.x||0,y0:t.y0||t.y||0,y1:t.y1||t.y||0,xLabel:t.xLabel,yLabel:t.yLabel,zLabel:t.zLabel,text:t.text,name:t.name,idealAlign:t.idealAlign,borderColor:t.borderColor,fontFamily:t.fontFamily,fontSize:t.fontSize,fontColor:t.fontColor,trace:{index:0,hoverinfo:""},xa:{_offset:0},ya:{_offset:0},index:0},i=n.select(e.container),a=e.outerContainer?n.select(e.outerContainer):i,o={hovermode:"closest",rotateLabels:!1,bgColor:e.bgColor||f.background,container:i,outerContainer:a,hoverdistance:v.MAXDIST},s=k([r],o,e.gd);return A(s,o.rotateLabels),s.node()}},{"../../lib":724,"../../lib/events":712,"../../lib/override_cursor":735,"../../lib/svg_text_utils":747,"../../plots/cartesian/axes":770,"../../registry":854,"../color":598,"../dragelement":620,"../drawing":623,"./constants":635,"./helpers":637,d3:128,"fast-isnumeric":140,tinycolor2:526}],639:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e,r,i){r("hoverlabel.bgcolor",(i=i||{}).bgcolor),r("hoverlabel.bordercolor",i.bordercolor),r("hoverlabel.namelength",i.namelength),n.coerceFont(r,"hoverlabel.font",i.font)}},{"../../lib":724}],640:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../dragelement"),o=t("./helpers"),s=t("./layout_attributes");e.exports={moduleType:"component",name:"fx",constants:t("./constants"),schema:{layout:s},attributes:t("./attributes"),layoutAttributes:s,supplyLayoutGlobalDefaults:t("./layout_global_defaults"),supplyDefaults:t("./defaults"),supplyLayoutDefaults:t("./layout_defaults"),calc:t("./calc"),getDistanceFunction:o.getDistanceFunction,getClosest:o.getClosest,inbox:o.inbox,quadrature:o.quadrature,appendArrayPointValue:o.appendArrayPointValue,castHoverOption:function(t,e,r){return i.castOption(t,e,"hoverlabel."+r)},castHoverinfo:function(t,e,r){return i.castOption(t,r,"hoverinfo",function(r){return i.coerceHoverinfo({hoverinfo:r},{_module:t._module},e)})},hover:t("./hover").hover,unhover:a.unhover,loneHover:t("./hover").loneHover,loneUnhover:function(t){var e=i.isD3Selection(t)?t:n.select(t);e.selectAll("g.hovertext").remove(),e.selectAll(".spikeline").remove()},click:t("./click")}},{"../../lib":724,"../dragelement":620,"./attributes":632,"./calc":633,"./click":634,"./constants":635,"./defaults":636,"./helpers":637,"./hover":638,"./layout_attributes":641,"./layout_defaults":642,"./layout_global_defaults":643,d3:128}],641:[function(t,e,r){"use strict";var n=t("./constants"),i=t("../../plots/font_attributes")({editType:"none"});i.family.dflt=n.HOVERFONT,i.size.dflt=n.HOVERFONTSIZE,e.exports={dragmode:{valType:"enumerated",values:["zoom","pan","select","lasso","orbit","turntable"],dflt:"zoom",editType:"modebar"},hovermode:{valType:"enumerated",values:["x","y","closest",!1],editType:"modebar"},hoverdistance:{valType:"integer",min:-1,dflt:20,editType:"none"},spikedistance:{valType:"integer",min:-1,dflt:20,editType:"none"},hoverlabel:{bgcolor:{valType:"color",editType:"none"},bordercolor:{valType:"color",editType:"none"},font:i,namelength:{valType:"integer",min:-1,dflt:15,editType:"none"},editType:"none"}}},{"../../plots/font_attributes":797,"./constants":635}],642:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}var o;a("dragmode"),e._has("cartesian")?(e._isHoriz=function(t){for(var e=!0,r=0;r<t.length;r++){var 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p=a.selectAll("rect."+d.grabAreaMaxClassName).data([0]);p.enter().append("rect").classed(d.grabAreaMaxClassName,!0).attr(f),p.attr("height",n._height)}}e.exports=function(t){var e=t._fullLayout,r=function(t){var e=u.list({_fullLayout:t},"x",!0),r=d.name,n=[];if(t._has("gl2d"))return n;for(var i=0;i<e.length;i++){var a=e[i];a[r]&&a[r].visible&&n.push(a)}return n}(e);var s=e._infolayer.selectAll("g."+d.containerClassName).data(r,function(t){return t._name});s.enter().append("g").classed(d.containerClassName,!0).attr("pointer-events","all"),s.exit().each(function(t){var r=n.select(this),i=t[d.name];r.remove(),e._topdefs.select("#"+i._clipId).remove()}),s.exit().size()&&function(t){for(var e=t._fullLayout._pushmargin||{},r=Object.keys(e),n=0;n<r.length;n++){var i=r[n];-1!==i.indexOf(d.name)&&a.autoMargin(t,i)}}(t),0!==r.length&&s.each(function(r){var s=n.select(this),l=r[d.name],c=e[u.id2name(r.anchor)];if(l.range){var x=l.range,_=r.range;x[0]=r.l2r(Math.min(r.r2l(x[0]),r.r2l(_[0]))),x[1]=r.l2r(Math.max(r.r2l(x[1]),r.r2l(_[1]))),l._input.range=x.slice()}r.cleanRange("rangeslider.range");var w=e.margin,M=e._size,k=r.domain,A=c.domain,T=(r._boundingBox||{}).height||0;l._id=d.name+r._id,l._clipId=l._id+"-"+e._uid,l._width=M.w*(k[1]-k[0]),l._height=(e.height-w.b-w.t)*l.thickness,l._offsetShift=Math.floor(l.borderwidth/2);var E=Math.round(w.l+M.w*k[0]),S=Math.round(w.t+M.h*(1-A[0])+T+l._offsetShift+d.extraPad);s.attr("transform","translate("+E+","+S+")");var L=r.r2l(l.range[0]),C=r.r2l(l.range[1]),P=C-L;l.p2d=function(t){return t/l._width*P+L},l.d2p=function(t){return(t-L)/P*l._width},l._rl=[L,C],s.call(p,t,r,l).call(m,t,r,l).call(v,t,r,l).call(g,t,r,l).call(y,t,r,l).call(b,t,r,l),function(t,e,r,a){var s=t.select("rect."+d.slideBoxClassName).node(),l=t.select("rect."+d.grabAreaMinClassName).node(),c=t.select("rect."+d.grabAreaMaxClassName).node();t.on("mousedown",function(){var u=n.event,d=u.target,p=u.clientX,m=p-t.node().getBoundingClientRect().left,v=a.d2p(r._rl[0]),g=a.d2p(r._rl[1]),y=f.coverSlip();function b(t){var u,f,b,x=+t.clientX-p;switch(d){case s:b="ew-resize",u=v+x,f=g+x;break;case l:b="col-resize",u=v+x,f=g;break;case c:b="col-resize",u=v,f=g+x;break;default:b="ew-resize",u=m,f=m+x}if(f<u){var _=f;f=u,u=_}a._pixelMin=u,a._pixelMax=f,h(n.select(y),b),function(t,e,r,n){function a(t){return r.l2r(o.constrain(t,n._rl[0],n._rl[1]))}var s=a(n.p2d(n._pixelMin)),l=a(n.p2d(n._pixelMax));window.requestAnimationFrame(function(){i.relayout(e,r._name+".range",[s,l])})}(0,e,r,a)}y.addEventListener("mousemove",b),y.addEventListener("mouseup",function t(){y.removeEventListener("mousemove",b);y.removeEventListener("mouseup",t);o.removeElement(y)})})}(s,t,r,l),function(t,e,r,n){var i=d.handleWidth/2;function a(t){return o.constrain(t,0,n._width)}function s(t){return o.constrain(t,-i,n._width+i)}var 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n=t("../annotations/attributes"),i=t("../../traces/scatter/attributes").line,a=t("../drawing/attributes").dash,o=t("../../lib/extend").extendFlat;e.exports={_isLinkedToArray:"shape",visible:{valType:"boolean",dflt:!0,editType:"calcIfAutorange+arraydraw"},type:{valType:"enumerated",values:["circle","rect","path","line"],editType:"calcIfAutorange+arraydraw"},layer:{valType:"enumerated",values:["below","above"],dflt:"above",editType:"arraydraw"},xref:o({},n.xref,{}),x0:{valType:"any",editType:"calcIfAutorange+arraydraw"},x1:{valType:"any",editType:"calcIfAutorange+arraydraw"},yref:o({},n.yref,{}),y0:{valType:"any",editType:"calcIfAutorange+arraydraw"},y1:{valType:"any",editType:"calcIfAutorange+arraydraw"},path:{valType:"string",editType:"calcIfAutorange+arraydraw"},opacity:{valType:"number",min:0,max:1,dflt:1,editType:"arraydraw"},line:{color:o({},i.color,{editType:"arraydraw"}),width:o({},i.width,{editType:"calcIfAutorange+arraydraw"}),dash:o({},a,{editType:"arraydraw"}),editType:"calcIfAutorange+arraydraw"},fillcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"arraydraw"},editType:"arraydraw"}},{"../../lib/extend":713,"../../traces/scatter/attributes":1048,"../annotations/attributes":581,"../drawing/attributes":622}],677:[function(t,e,r){"use 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o,s,u,h,m,v,g,y,b,x,_,w,M,k,A,T,E,S,L,C,P,z,O,D,I,R,N,F,j,B,U=10,V=10,q={element:e.node(),gd:t,prepFn:function(e){D=a.getFromId(t,r.xref),I=a.getFromId(t,r.yref),R=f.getDataToPixel(t,D),N=f.getDataToPixel(t,I,!0),F=f.getPixelToData(t,D),j=f.getPixelToData(t,I,!0);var n="shapes["+i+"]";"path"===r.type?(z=r.path,O=n+".path"):(s=R(r.x0),u=N(r.y0),h=R(r.x1),m=N(r.y1),v=n+".x0",g=n+".y0",y=n+".x1",b=n+".y1");s<h?(w=s,T=n+".x0",C="x0",M=h,E=n+".x1",P="x1"):(w=h,T=n+".x1",C="x1",M=s,E=n+".x0",P="x0");u<m?(x=u,k=n+".y0",S="y0",_=m,A=n+".y1",L="y1"):(x=m,k=n+".y1",S="y1",_=u,A=n+".y0",L="y0");o={},G(e),q.moveFn="move"===B?Y:W},doneFn:function(){c(e),n.relayout(t,o)}},H=q.element.getBoundingClientRect();function G(t){var r=H.right-H.left,n=H.bottom-H.top,i=t.clientX-H.left,a=t.clientY-H.top,o=r>U&&n>V&&!t.shiftKey?l.getCursor(i/r,1-a/n):"move";c(e,o),B=o.split("-")[0]}function Y(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var l=function(t){return j(N(t)+i)};I&&"date"===I.type&&(l=f.encodeDate(l)),r.path=p(z,a,l),o[O]=r.path}else o[v]=r.x0=F(s+n),o[g]=r.y0=j(u+i),o[y]=r.x1=F(h+n),o[b]=r.y1=j(m+i);e.attr("d",d(t,r))}function W(n,i){if("path"===r.type){var a=function(t){return F(R(t)+n)};D&&"date"===D.type&&(a=f.encodeDate(a));var s=function(t){return j(N(t)+i)};I&&"date"===I.type&&(s=f.encodeDate(s)),r.path=p(z,a,s),o[O]=r.path}else{var l=~B.indexOf("n")?x+i:x,c=~B.indexOf("s")?_+i:_,u=~B.indexOf("w")?w+n:w,h=~B.indexOf("e")?M+n:M;c-l>V&&(o[k]=r[S]=j(l),o[A]=r[L]=j(c)),h-u>U&&(o[T]=r[C]=F(u),o[E]=r[P]=F(h))}e.attr("d",d(t,r))}l.init(q),e.node().onmousemove=G}(t,m,i,e)}}function d(t,e){var r,n,o,s,l=e.type,c=a.getFromId(t,e.xref),h=a.getFromId(t,e.yref),d=t._fullLayout._size;if(c?(r=f.shapePositionToRange(c),n=function(t){return c._offset+c.r2p(r(t,!0))}):n=function(t){return d.l+d.w*t},h?(o=f.shapePositionToRange(h),s=function(t){return h._offset+h.r2p(o(t,!0))}):s=function(t){return d.t+d.h*(1-t)},"path"===l)return c&&"date"===c.type&&(n=f.decodeDate(n)),h&&"date"===h.type&&(s=f.decodeDate(s)),function(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,a=t.charAt(0),o=u.paramIsX[a],s=u.paramIsY[a],l=u.numParams[a],c=t.substr(1).replace(u.paramRE,function(t){return o[n]?t=e(t):s[n]&&(t=r(t)),++n>l&&(t="X"),t});return n>l&&(c=c.replace(/[\s,]*X.*/,""),i.log("Ignoring extra params in segment "+t)),a+c})}(e.path,n,s);var p=n(e.x0),m=n(e.x1),v=s(e.y0),g=s(e.y1);if("line"===l)return"M"+p+","+v+"L"+m+","+g;if("rect"===l)return"M"+p+","+v+"H"+m+"V"+g+"H"+p+"Z";var y=(p+m)/2,b=(v+g)/2,x=Math.abs(y-p),_=Math.abs(b-v),w="A"+x+","+_,M=y+x+","+b;return"M"+M+w+" 0 1,1 "+(y+","+(b-_))+w+" 0 0,1 "+M+"Z"}function p(t,e,r){return t.replace(u.segmentRE,function(t){var n=0,i=t.charAt(0),a=u.paramIsX[i],o=u.paramIsY[i],s=u.numParams[i];return i+t.substr(1).replace(u.paramRE,function(t){return n>=s?t:(a[n]?t=e(t):o[n]&&(t=r(t)),n++,t)})})}e.exports={draw:function(t){var e=t._fullLayout;e._shapeUpperLayer.selectAll("path").remove(),e._shapeLowerLayer.selectAll("path").remove(),e._shapeSubplotLayers.selectAll("path").remove();for(var r=0;r<e.shapes.length;r++)e.shapes[r].visible&&h(t,r)},drawOne:h}},{"../../lib":724,"../../lib/setcursor":743,"../../plotly":765,"../../plots/cartesian/axes":770,"../color":598,"../dragelement":620,"../drawing":623,"./constants":678,"./helpers":681}],681:[function(t,e,r){"use strict";r.rangeToShapePosition=function(t){return"log"===t.type?t.r2d:function(t){return t}},r.shapePositionToRange=function(t){return"log"===t.type?t.d2r:function(t){return t}},r.decodeDate=function(t){return function(e){return e.replace&&(e=e.replace("_"," ")),t(e)}},r.encodeDate=function(t){return function(e){return t(e).replace(" ","_")}},r.getDataToPixel=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.shapePositionToRange(e);i=function(t){return e._offset+e.r2p(o(t,!0))},"date"===e.type&&(i=r.decodeDate(i))}else i=n?function(t){return a.t+a.h*(1-t)}:function(t){return a.l+a.w*t};return i},r.getPixelToData=function(t,e,n){var i,a=t._fullLayout._size;if(e){var o=r.rangeToShapePosition(e);i=function(t){return o(e.p2r(t-e._offset))}}else i=n?function(t){return 1-(t-a.t)/a.h}:function(t){return(t-a.l)/a.w};return i}},{}],682:[function(t,e,r){"use strict";var n=t("./draw");e.exports={moduleType:"component",name:"shapes",layoutAttributes:t("./attributes"),supplyLayoutDefaults:t("./defaults"),includeBasePlot:t("../../plots/cartesian/include_components")("shapes"),calcAutorange:t("./calc_autorange"),draw:n.draw,drawOne:n.drawOne}},{"../../plots/cartesian/include_components":780,"./attributes":676,"./calc_autorange":677,"./defaults":679,"./draw":680}],683:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../plots/cartesian/axes"),a=t("./attributes"),o=t("./helpers");e.exports=function(t,e,r,s,l){function c(r,i){return n.coerce(t,e,a,r,i)}if(s=s||{},!c("visible",!(l=l||{}).itemIsNotPlainObject))return 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n=t("../../plots/font_attributes"),i=t("../../plots/pad_attributes"),a=t("../../lib/extend").extendDeepAll,o=t("../../plot_api/edit_types").overrideAll,s=t("../../plots/animation_attributes"),l=t("./constants");e.exports=o({_isLinkedToArray:"slider",visible:{valType:"boolean",dflt:!0},active:{valType:"number",min:0,dflt:0},steps:{_isLinkedToArray:"step",method:{valType:"enumerated",values:["restyle","relayout","animate","update","skip"],dflt:"restyle"},args:{valType:"info_array",freeLength:!0,items:[{valType:"any"},{valType:"any"},{valType:"any"}]},label:{valType:"string"},value:{valType:"string"},execute:{valType:"boolean",dflt:!0}},lenmode:{valType:"enumerated",values:["fraction","pixels"],dflt:"fraction"},len:{valType:"number",min:0,dflt:1},x:{valType:"number",min:-2,max:3,dflt:0},pad:a({},i,{},{t:{dflt:20}}),xanchor:{valType:"enumerated",values:["auto","left","center","right"],dflt:"left"},y:{valType:"number",min:-2,max:3,dflt:0},yanchor:{valType:"enumerated",values:["auto","top","middle","bottom"],dflt:"top"},transition:{duration:{valType:"number",min:0,dflt:150},easing:{valType:"enumerated",values:s.transition.easing.values,dflt:"cubic-in-out"}},currentvalue:{visible:{valType:"boolean",dflt:!0},xanchor:{valType:"enumerated",values:["left","center","right"],dflt:"left"},offset:{valType:"number",dflt:10},prefix:{valType:"string"},suffix:{valType:"string"},font:n({})},font:n({}),activebgcolor:{valType:"color",dflt:l.gripBgActiveColor},bgcolor:{valType:"color",dflt:l.railBgColor},bordercolor:{valType:"color",dflt:l.railBorderColor},borderwidth:{valType:"number",min:0,dflt:l.railBorderWidth},ticklen:{valType:"number",min:0,dflt:l.tickLength},tickcolor:{valType:"color",dflt:l.tickColor},tickwidth:{valType:"number",min:0,dflt:1},minorticklen:{valType:"number",min:0,dflt:l.minorTickLength}},"arraydraw","from-root")},{"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/animation_attributes":766,"../../plots/font_attributes":797,"../../plots/pad_attributes":832,"./constants":685}],685:[function(t,e,r){"use 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s=e/n;this.vbar.call(a.setTranslate,t,e+s*this._vbarTranslateMax)}}},{"../../lib":724,"../color":598,"../drawing":623,d3:128}],696:[function(t,e,r){"use strict";e.exports={FROM_BL:{left:0,center:.5,right:1,bottom:0,middle:.5,top:1},FROM_TL:{left:0,center:.5,right:1,bottom:1,middle:.5,top:0},FROM_BR:{left:1,center:.5,right:0,bottom:0,middle:.5,top:1},LINE_SPACING:1.3,MID_SHIFT:.35,OPPOSITE_SIDE:{left:"right",right:"left",top:"bottom",bottom:"top"}}},{}],697:[function(t,e,r){"use strict";e.exports={COMPARISON_OPS:["=","!=","<",">=",">","<="],COMPARISON_OPS2:["=","<",">=",">","<="],INTERVAL_OPS:["[]","()","[)","(]","][",")(","](",")["],SET_OPS:["{}","}{"],CONSTRAINT_REDUCTION:{"=":"=","<":"<","<=":"<",">":">",">=":">","[]":"[]","()":"[]","[)":"[]","(]":"[]","][":"][",")(":"][","](":"][",")[":"]["}}},{}],698:[function(t,e,r){"use strict";e.exports={solid:[1],dot:[1,1],dash:[4,1],longdash:[8,1],dashdot:[4,1,1,1],longdashdot:[8,1,1,1]}},{}],699:[function(t,e,r){"use 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x<=_?[a,y,r[2]]:[v,b,r[2]]}(M,r,S);isFinite(k[0])&&isFinite(k[1])&&isFinite(k[2])||(k=S),e.rotate(k),S=k}}else r=p(e,T=x);h.of(this,arguments)({type:"zoom"})}),A=h.of(this,arguments),d++||A({type:"zoomstart"})}).on("zoomend",function(){var r;n.select(this).style(l),v.call(f,"zoom",null),r=h.of(this,arguments),--d||r({type:"zoomend"}),u(t,e,b)}).on("zoom.redraw",function(){t.render()}),n.rebind(f,h,"on")}function p(t,e){var r=t.invert(e);return r&&isFinite(r[0])&&isFinite(r[1])&&function(t){var e=t[0]*a,r=t[1]*a,n=Math.cos(r);return[n*Math.cos(e),n*Math.sin(e),Math.sin(r)]}(r)}function m(t,e,r,n){var i=v(r-t),a=v(n-e);return Math.sqrt(i*i+a*a)}function v(t){return(t%360+540)%360-180}function g(t,e,r){var n=r*a,i=t.slice(),o=0===e?1:0,s=2===e?1:2,l=Math.cos(n),c=Math.sin(n);return i[o]=t[o]*l-t[s]*c,i[s]=t[s]*l+t[o]*c,i}function y(t,e){for(var r=0,n=0,i=t.length;n<i;++n)r+=t[n]*e[n];return r}e.exports=function(t,e){var r=t.projection;return(e._isScoped?f:e._isClipped?d:h)(t,r)}},{"../../lib":724,d3:128}],807:[function(t,e,r){"use strict";var n=t("../registry"),i=t("./cartesian/constants").SUBPLOT_PATTERN;r.getSubplotCalcData=function(t,e,r){var i=n.subplotsRegistry[e];if(!i)return[];for(var a=i.attr,o=[],s=0;s<t.length;s++){var l=t[s];l[0].trace[a]===r&&o.push(l)}return o},r.getModuleCalcData=function(t,e){var r=[],i="string"==typeof e?n.getModule(e):e;if(!i)return r;for(var a=0;a<t.length;a++){var o=t[a],s=o[0].trace;s._module===i&&!0===s.visible&&r.push(o)}return r},r.getSubplotData=function(t,e,r){if(!n.subplotsRegistry[e])return[];var a,o,s,l=n.subplotsRegistry[e].attr,c=[];if("gl2d"===e){var u=r.match(i);o="x"+u[1],s="y"+u[2]}for(var f=0;f<t.length;f++)a=t[f],"gl2d"===e&&n.traceIs(a,"gl2d")?a[l[0]]===o&&a[l[1]]===s&&c.push(a):a[l]===r&&c.push(a);return c}},{"../registry":854,"./cartesian/constants":775}],808:[function(t,e,r){"use strict";var n=t("mouse-change"),i=t("mouse-wheel"),a=t("mouse-event-offset"),o=t("../cartesian/constants"),s=t("has-passive-events");e.exports=function(t){var e=t.mouseContainer,r=t.glplot,l=new function(t,e){this.element=t,this.plot=e,this.mouseListener=null,this.wheelListener=null,this.lastInputTime=Date.now(),this.lastPos=[0,0],this.boxEnabled=!1,this.boxInited=!1,this.boxStart=[0,0],this.boxEnd=[0,0],this.dragStart=[0,0]}(e,r);function c(){t.xaxis.autorange=!1,t.yaxis.autorange=!1}function u(e,n,i){var a,s,u=t.calcDataBox(),f=r.viewBox,h=l.lastPos[0],d=l.lastPos[1],p=o.MINDRAG*r.pixelRatio,m=o.MINZOOM*r.pixelRatio;function v(e,r,n){var i=Math.min(r,n),a=Math.max(r,n);i!==a?(u[e]=i,u[e+2]=a,l.dataBox=u,t.setRanges(u)):(t.selectBox.selectBox=[0,0,1,1],t.glplot.setDirty())}switch(n*=r.pixelRatio,i*=r.pixelRatio,i=f[3]-f[1]-i,t.fullLayout.dragmode){case"zoom":if(e){var g=n/(f[2]-f[0])*(u[2]-u[0])+u[0],y=i/(f[3]-f[1])*(u[3]-u[1])+u[1];l.boxInited||(l.boxStart[0]=g,l.boxStart[1]=y,l.dragStart[0]=n,l.dragStart[1]=i),l.boxEnd[0]=g,l.boxEnd[1]=y,l.boxInited=!0,l.boxEnabled||l.boxStart[0]===l.boxEnd[0]&&l.boxStart[1]===l.boxEnd[1]||(l.boxEnabled=!0);var b=Math.abs(l.dragStart[0]-n)<m,x=Math.abs(l.dragStart[1]-i)<m;if(!function(){for(var e=t.graphDiv._fullLayout._axisConstraintGroups,r=t.xaxis._id,n=t.yaxis._id,i=0;i<e.length;i++)if(-1!==e[i][r]){if(-1!==e[i][n])return!0;break}return!1}()||b&&x)b&&(l.boxEnd[0]=l.boxStart[0]),x&&(l.boxEnd[1]=l.boxStart[1]);else{a=l.boxEnd[0]-l.boxStart[0],s=l.boxEnd[1]-l.boxStart[1];var _=(u[3]-u[1])/(u[2]-u[0]);Math.abs(a*_)>Math.abs(s)?(l.boxEnd[1]=l.boxStart[1]+Math.abs(a)*_*(s>=0?1:-1),l.boxEnd[1]<u[1]?(l.boxEnd[1]=u[1],l.boxEnd[0]=l.boxStart[0]+(u[1]-l.boxStart[1])/Math.abs(_)):l.boxEnd[1]>u[3]&&(l.boxEnd[1]=u[3],l.boxEnd[0]=l.boxStart[0]+(u[3]-l.boxStart[1])/Math.abs(_))):(l.boxEnd[0]=l.boxStart[0]+Math.abs(s)/_*(a>=0?1:-1),l.boxEnd[0]<u[0]?(l.boxEnd[0]=u[0],l.boxEnd[1]=l.boxStart[1]+(u[0]-l.boxStart[0])*Math.abs(_)):l.boxEnd[0]>u[2]&&(l.boxEnd[0]=u[2],l.boxEnd[1]=l.boxStart[1]+(u[2]-l.boxStart[0])*Math.abs(_)))}}else l.boxEnabled?(a=l.boxStart[0]!==l.boxEnd[0],s=l.boxStart[1]!==l.boxEnd[1],a||s?(a&&(v(0,l.boxStart[0],l.boxEnd[0]),t.xaxis.autorange=!1),s&&(v(1,l.boxStart[1],l.boxEnd[1]),t.yaxis.autorange=!1),t.relayoutCallback()):t.glplot.setDirty(),l.boxEnabled=!1,l.boxInited=!1):l.boxInited&&(l.boxInited=!1);break;case"pan":l.boxEnabled=!1,l.boxInited=!1,e?(l.panning||(l.dragStart[0]=n,l.dragStart[1]=i),Math.abs(l.dragStart[0]-n)<p&&(n=l.dragStart[0]),Math.abs(l.dragStart[1]-i)<p&&(i=l.dragStart[1]),a=(h-n)*(u[2]-u[0])/(r.viewBox[2]-r.viewBox[0]),s=(d-i)*(u[3]-u[1])/(r.viewBox[3]-r.viewBox[1]),u[0]+=a,u[2]+=a,u[1]+=s,u[3]+=s,t.setRanges(u),l.panning=!0,l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations()):l.panning&&(l.panning=!1,t.relayoutCallback())}l.lastPos[0]=n,l.lastPos[1]=i}return l.mouseListener=n(e,u),e.addEventListener("touchstart",function(t){var r=a(t.changedTouches[0],e);u(0,r[0],r[1]),u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchmove",function(t){t.preventDefault();var r=a(t.changedTouches[0],e);u(1,r[0],r[1]),t.preventDefault()},!!s&&{passive:!1}),e.addEventListener("touchend",function(t){u(0,l.lastPos[0],l.lastPos[1]),t.preventDefault()},!!s&&{passive:!1}),l.wheelListener=i(e,function(e,n){if(!t.scrollZoom)return!1;var i=t.calcDataBox(),a=r.viewBox,o=l.lastPos[0],s=l.lastPos[1],u=Math.exp(5*n/(a[3]-a[1])),f=o/(a[2]-a[0])*(i[2]-i[0])+i[0],h=s/(a[3]-a[1])*(i[3]-i[1])+i[1];return i[0]=(i[0]-f)*u+f,i[2]=(i[2]-f)*u+f,i[1]=(i[1]-h)*u+h,i[3]=(i[3]-h)*u+h,t.setRanges(i),l.lastInputTime=Date.now(),c(),t.cameraChanged(),t.handleAnnotations(),t.relayoutCallback(),!0},!0),l}},{"../cartesian/constants":775,"has-passive-events":256,"mouse-change":424,"mouse-event-offset":425,"mouse-wheel":427}],809:[function(t,e,r){"use strict";var n=t("../cartesian/axes"),i=t("../../lib/html2unicode"),a=t("../../lib/str2rgbarray");function o(t){this.scene=t,this.gl=t.gl,this.pixelRatio=t.pixelRatio,this.screenBox=[0,0,1,1],this.viewBox=[0,0,1,1],this.dataBox=[-1,-1,1,1],this.borderLineEnable=[!1,!1,!1,!1],this.borderLineWidth=[1,1,1,1],this.borderLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.ticks=[[],[]],this.tickEnable=[!0,!0,!1,!1],this.tickPad=[15,15,15,15],this.tickAngle=[0,0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickMarkLength=[0,0,0,0],this.tickMarkWidth=[0,0,0,0],this.tickMarkColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labels=["x","y"],this.labelEnable=[!0,!0,!1,!1],this.labelAngle=[0,Math.PI/2,0,3*Math.PI/2],this.labelPad=[15,15,15,15],this.labelSize=[12,12],this.labelFont=["sans-serif","sans-serif"],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.title="",this.titleEnable=!0,this.titleCenter=[0,0,0,0],this.titleAngle=0,this.titleColor=[0,0,0,1],this.titleFont="sans-serif",this.titleSize=18,this.gridLineEnable=[!0,!0],this.gridLineColor=[[0,0,0,.5],[0,0,0,.5]],this.gridLineWidth=[1,1],this.zeroLineEnable=[!0,!0],this.zeroLineWidth=[1,1],this.zeroLineColor=[[0,0,0,1],[0,0,0,1]],this.borderColor=!1,this.backgroundColor=[0,0,0,0],this.static=this.scene.staticPlot}var s=o.prototype,l=["xaxis","yaxis"];s.merge=function(t){var e,r,n,o,s,c,u,f,h,d,p;for(this.titleEnable=!1,this.backgroundColor=a(t.plot_bgcolor),d=0;d<2;++d){var m=(e=l[d]).charAt(0);for(n=(r=t[this.scene[e]._name]).title===this.scene.fullLayout._dfltTitle[m]?"":r.title,p=0;p<=2;p+=2)this.labelEnable[d+p]=!1,this.labels[d+p]=i(n),this.labelColor[d+p]=a(r.titlefont.color),this.labelFont[d+p]=r.titlefont.family,this.labelSize[d+p]=r.titlefont.size,this.labelPad[d+p]=this.getLabelPad(e,r),this.tickEnable[d+p]=!1,this.tickColor[d+p]=a((r.tickfont||{}).color),this.tickAngle[d+p]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180,this.tickPad[d+p]=this.getTickPad(r),this.tickMarkLength[d+p]=0,this.tickMarkWidth[d+p]=r.tickwidth||0,this.tickMarkColor[d+p]=a(r.tickcolor),this.borderLineEnable[d+p]=!1,this.borderLineColor[d+p]=a(r.linecolor),this.borderLineWidth[d+p]=r.linewidth||0;u=this.hasSharedAxis(r),s=this.hasAxisInDfltPos(e,r)&&!u,c=this.hasAxisInAltrPos(e,r)&&!u,o=r.mirror||!1,f=u?-1!==String(o).indexOf("all"):!!o,h=u?"allticks"===o:-1!==String(o).indexOf("ticks"),s?this.labelEnable[d]=!0:c&&(this.labelEnable[d+2]=!0),s?this.tickEnable[d]=r.showticklabels:c&&(this.tickEnable[d+2]=r.showticklabels),(s||f)&&(this.borderLineEnable[d]=r.showline),(c||f)&&(this.borderLineEnable[d+2]=r.showline),(s||h)&&(this.tickMarkLength[d]=this.getTickMarkLength(r)),(c||h)&&(this.tickMarkLength[d+2]=this.getTickMarkLength(r)),this.gridLineEnable[d]=r.showgrid,this.gridLineColor[d]=a(r.gridcolor),this.gridLineWidth[d]=r.gridwidth,this.zeroLineEnable[d]=r.zeroline,this.zeroLineColor[d]=a(r.zerolinecolor),this.zeroLineWidth[d]=r.zerolinewidth}},s.hasSharedAxis=function(t){var e=this.scene,r=e.fullLayout._subplots.gl2d;return 0!==n.findSubplotsWithAxis(r,t).indexOf(e.id)},s.hasAxisInDfltPos=function(t,e){var r=e.side;return"xaxis"===t?"bottom"===r:"yaxis"===t?"left"===r:void 0},s.hasAxisInAltrPos=function(t,e){var r=e.side;return"xaxis"===t?"top"===r:"yaxis"===t?"right"===r:void 0},s.getLabelPad=function(t,e){var r=e.titlefont.size,n=e.showticklabels;return"xaxis"===t?"top"===e.side?r*(1.5+(n?1:0))-10:r*(1.5+(n?.5:0))-10:"yaxis"===t?"right"===e.side?10+r*(1.5+(n?1:.5)):10+r*(1.5+(n?.5:0)):void 0},s.getTickPad=function(t){return"outside"===t.ticks?10+t.ticklen:15},s.getTickMarkLength=function(t){if(!t.ticks)return 0;var e=t.ticklen;return"inside"===t.ticks?-e:e},e.exports=function(t){return new o(t)}},{"../../lib/html2unicode":722,"../../lib/str2rgbarray":746,"../cartesian/axes":770}],810:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("./scene2d"),a=t("../layout_attributes"),o=t("../../constants/xmlns_namespaces"),s=t("../cartesian/constants"),l=t("../cartesian"),c=t("../../components/fx/layout_attributes"),u=t("../get_data").getSubplotData;r.name="gl2d",r.attr=["xaxis","yaxis"],r.idRoot=["x","y"],r.idRegex=s.idRegex,r.attrRegex=s.attrRegex,r.attributes=t("../cartesian/attributes"),r.supplyLayoutDefaults=function(t,e,r){e._has("cartesian")||l.supplyLayoutDefaults(t,e,r)},r.layoutAttrOverrides=n(l.layoutAttributes,"plot","from-root"),r.baseLayoutAttrOverrides=n({plot_bgcolor:a.plot_bgcolor,hoverlabel:c.hoverlabel},"plot","nested"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl2d,a=0;a<n.length;a++){var o=n[a],s=e._plots[o],l=u(r,"gl2d",o),c=s._scene2d;void 0===c&&(c=new i({id:o,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),s._scene2d=c),c.plot(l,t.calcdata,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl2d||[],a=0;a<i.length;a++){var o=i[a],s=n._plots[o];if(s._scene2d)0===u(t,"gl2d",o).length&&(s._scene2d.destroy(),delete n._plots[o])}l.clean.apply(this,arguments)},r.drawFramework=function(t){t._context.staticPlot||l.drawFramework(t)},r.toSVG=function(t){for(var e=t._fullLayout,r=e._subplots.gl2d,n=0;n<r.length;n++){var i=e._plots[r[n]]._scene2d,a=i.toImage("png");e._glimages.append("svg:image").attr({xmlns:o.svg,"xlink:href":a,x:0,y:0,width:"100%",height:"100%",preserveAspectRatio:"none"}),i.destroy()}},r.updateFx=function(t){for(var e=t._subplots.gl2d,r=0;r<e.length;r++){t._plots[e[r]]._scene2d.updateFx(t.dragmode)}}},{"../../components/fx/layout_attributes":641,"../../constants/xmlns_namespaces":704,"../../plot_api/edit_types":754,"../cartesian":781,"../cartesian/attributes":769,"../cartesian/constants":775,"../get_data":807,"../layout_attributes":824,"./scene2d":811}],811:[function(t,e,r){"use strict";var n,i,a=t("../../registry"),o=t("../../plots/cartesian/axes"),s=t("../../components/fx"),l=t("gl-plot2d"),c=t("gl-spikes2d"),u=t("gl-select-box"),f=t("webgl-context"),h=t("./convert"),d=t("./camera"),p=t("../../lib/html2unicode"),m=t("../../lib/show_no_webgl_msg"),v=t("../cartesian/constraints"),g=v.enforce,y=v.clean,b=["xaxis","yaxis"],x=t("../cartesian/constants").SUBPLOT_PATTERN;function _(t,e){this.container=t.container,this.graphDiv=t.graphDiv,this.pixelRatio=t.plotGlPixelRatio||window.devicePixelRatio,this.id=t.id,this.staticPlot=!!t.staticPlot,this.scrollZoom=this.graphDiv._context.scrollZoom,this.fullData=null,this.updateRefs(e),this.makeFramework(),this.glplotOptions=h(this),this.glplotOptions.merge(e),this.glplot=l(this.glplotOptions),this.camera=d(this),this.traces={},this.spikes=c(this.glplot),this.selectBox=u(this.glplot,{innerFill:!1,outerFill:!0}),this.lastButtonState=0,this.pickResult=null,this.isMouseOver=!0,this.bounds=[1/0,1/0,-1/0,-1/0],this.stopped=!1,this.redraw=this.draw.bind(this),this.redraw()}e.exports=_;var w=_.prototype;w.makeFramework=function(){if(this.staticPlot){if(!(i||(n=document.createElement("canvas"),i=f({canvas:n,preserveDrawingBuffer:!1,premultipliedAlpha:!0,antialias:!0}))))throw new Error("Error creating static canvas/context for image server");this.canvas=n,this.gl=i}else{var t=this.container.querySelector(".gl-canvas-focus"),e=f({canvas:t,preserveDrawingBuffer:!0,premultipliedAlpha:!0});e||m(this),this.canvas=t,this.gl=e}var r=this.canvas;r.style.width="100%",r.style.height="100%",r.style.position="absolute",r.style.top="0px",r.style.left="0px",r.style["pointer-events"]="none",this.updateSize(r),r.className+=" user-select-none";var a=this.svgContainer=document.createElementNS("http://www.w3.org/2000/svg","svg");a.style.position="absolute",a.style.top=a.style.left="0px",a.style.width=a.style.height="100%",a.style["z-index"]=20,a.style["pointer-events"]="none";var o=this.mouseContainer=document.createElement("div");o.style.position="absolute",o.style["pointer-events"]="auto",this.pickCanvas=this.container.querySelector(".gl-canvas-pick");var s=this.container;s.appendChild(a),s.appendChild(o);var l=this;o.addEventListener("mouseout",function(){l.isMouseOver=!1,l.unhover()}),o.addEventListener("mouseover",function(){l.isMouseOver=!0})},w.toImage=function(t){t||(t="png"),this.stopped=!0,this.staticPlot&&this.container.appendChild(n),this.updateSize(this.canvas);var e=this.glplot.gl,r=e.drawingBufferWidth,i=e.drawingBufferHeight;e.clearColor(1,1,1,0),e.clear(e.COLOR_BUFFER_BIT|e.DEPTH_BUFFER_BIT),this.glplot.setDirty(),this.glplot.draw(),e.bindFramebuffer(e.FRAMEBUFFER,null);var a=new Uint8Array(r*i*4);e.readPixels(0,0,r,i,e.RGBA,e.UNSIGNED_BYTE,a);for(var o=0,s=i-1;o<s;++o,--s)for(var l=0;l<r;++l)for(var c=0;c<4;++c){var u=a[4*(r*o+l)+c];a[4*(r*o+l)+c]=a[4*(r*s+l)+c],a[4*(r*s+l)+c]=u}var f=document.createElement("canvas");f.width=r,f.height=i;var h,d=f.getContext("2d"),p=d.createImageData(r,i);switch(p.data.set(a),d.putImageData(p,0,0),t){case"jpeg":h=f.toDataURL("image/jpeg");break;case"webp":h=f.toDataURL("image/webp");break;default:h=f.toDataURL("image/png")}return 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i={lastInputTime:this.camera.lastInputTime};i[e._name]=e.range.slice(0),i[r._name]=r.range.slice(0),t.emit("plotly_relayout",i)},w.cameraChanged=function(){var t=this.camera;this.glplot.setDataBox(this.calcDataBox());var e=this.computeTickMarks();(function(t,e){for(var r=0;r<2;++r){var n=t[r],i=e[r];if(n.length!==i.length)return!0;for(var a=0;a<n.length;++a)if(n[a].x!==i[a].x)return!0}return!1})(e,this.glplotOptions.ticks)&&(this.glplotOptions.ticks=e,this.glplotOptions.dataBox=t.dataBox,this.glplot.update(this.glplotOptions),this.handleAnnotations())},w.handleAnnotations=function(){for(var t=this.graphDiv,e=this.fullLayout.annotations,r=0;r<e.length;r++){var n=e[r];n.xref===this.xaxis._id&&n.yref===this.yaxis._id&&a.getComponentMethod("annotations","drawOne")(t,r)}},w.destroy=function(){if(this.glplot){var t=this.traces;t&&Object.keys(t).map(function(e){t[e].dispose(),delete 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e=this.xaxis,r=this.yaxis,n=e.l2r,i=r.l2r;e.range=[n(t[0]),n(t[2])],r.range=[i(t[1]),i(t[3])]},w.updateTraces=function(t,e){var r,n,i,a=Object.keys(this.traces);this.fullData=t;t:for(r=0;r<a.length;r++){var o=a[r],s=this.traces[o];for(n=0;n<t.length;n++)if((i=t[n]).uid===o&&i.type===s.type)continue t;s.dispose(),delete this.traces[o]}for(r=0;r<t.length;r++){i=t[r];var l=e[r],c=this.traces[i.uid];c?c.update(i,l):(c=i._module.plot(this,i,l),this.traces[i.uid]=c)}this.glplot.objects.sort(function(t,e){return t._trace.index-e._trace.index})},w.updateFx=function(t){"lasso"===t||"select"===t?(this.pickCanvas.style["pointer-events"]="none",this.mouseContainer.style["pointer-events"]="none"):(this.pickCanvas.style["pointer-events"]="auto",this.mouseContainer.style["pointer-events"]="auto"),this.mouseContainer.style.cursor="pan"===t?"move":"zoom"===t?"crosshair":null},w.emitPointAction=function(t,e){for(var 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v=this.fullData[m.trace.index]||{},g=m.pointIndex,y=s.castHoverinfo(v,i,g);if(y&&"all"!==y){var b=y.split("+");-1===b.indexOf("x")&&(m.traceCoord[0]=void 0),-1===b.indexOf("y")&&(m.traceCoord[1]=void 0),-1===b.indexOf("z")&&(m.traceCoord[2]=void 0),-1===b.indexOf("text")&&(m.textLabel=void 0),-1===b.indexOf("name")&&(m.name=void 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n=t("../../plot_api/edit_types").overrideAll,i=t("../../components/fx/layout_attributes"),a=t("./scene"),o=t("../get_data").getSubplotData,s=t("../../lib"),l=t("../../constants/xmlns_namespaces");r.name="gl3d",r.attr="scene",r.idRoot="scene",r.idRegex=r.attrRegex=s.counterRegex("scene"),r.attributes=t("./layout/attributes"),r.layoutAttributes=t("./layout/layout_attributes"),r.baseLayoutAttrOverrides=n({hoverlabel:i.hoverlabel},"plot","nested"),r.supplyLayoutDefaults=t("./layout/defaults"),r.plot=function(t){for(var e=t._fullLayout,r=t._fullData,n=e._subplots.gl3d,i=0;i<n.length;i++){var l=n[i],c=o(r,"gl3d",l),u=e[l],f=u._scene;f||(f=new a({id:l,graphDiv:t,container:t.querySelector(".gl-container"),staticPlot:t._context.staticPlot,plotGlPixelRatio:t._context.plotGlPixelRatio},e),u._scene=f),f.cameraInitial||(f.cameraInitial=s.extendDeep({},u.camera)),f.plot(c,e,t.layout)}},r.clean=function(t,e,r,n){for(var i=n._subplots.gl3d||[],a=0;a<i.length;a++){var 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d=l[h];c=t[d]||{},u=e[d]={_id:d[0]+r.scene,_name:d},o(c,u,f,r.data),s(c,u,f,{font:r.font,letter:d[0],data:r.data,showGrid:!0,bgColor:r.bgColor,calendar:r.calendar},r.fullLayout),f("gridcolor",n(u.color,r.bgColor,13600/187).toRgbString()),f("title",d[0]),u.setScale=i.noop,f("showspikes")&&(f("spikesides"),f("spikethickness"),f("spikecolor",u.color)),f("showaxeslabels"),f("showbackground")&&f("backgroundcolor")}}},{"../../../lib":724,"../../cartesian/axis_defaults":772,"../../cartesian/type_defaults":794,"./axis_attributes":815,tinycolor2:526}],817:[function(t,e,r){"use strict";var n=t("../../../lib/html2unicode"),i=t("../../../lib/str2rgbarray"),a=["xaxis","yaxis","zaxis"];function o(){this.bounds=[[-10,-10,-10],[10,10,10]],this.ticks=[[],[],[]],this.tickEnable=[!0,!0,!0],this.tickFont=["sans-serif","sans-serif","sans-serif"],this.tickSize=[12,12,12],this.tickAngle=[0,0,0],this.tickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.tickPad=[18,18,18],this.labels=["x","y","z"],this.labelEnable=[!0,!0,!0],this.labelFont=["Open Sans","Open Sans","Open Sans"],this.labelSize=[20,20,20],this.labelAngle=[0,0,0],this.labelColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.labelPad=[30,30,30],this.lineEnable=[!0,!0,!0],this.lineMirror=[!1,!1,!1],this.lineWidth=[1,1,1],this.lineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.lineTickEnable=[!0,!0,!0],this.lineTickMirror=[!1,!1,!1],this.lineTickLength=[10,10,10],this.lineTickWidth=[1,1,1],this.lineTickColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.gridEnable=[!0,!0,!0],this.gridWidth=[1,1,1],this.gridColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroEnable=[!0,!0,!0],this.zeroLineColor=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.zeroLineWidth=[2,2,2],this.backgroundEnable=[!0,!0,!0],this.backgroundColor=[[.8,.8,.8,.5],[.8,.8,.8,.5],[.8,.8,.8,.5]],this._defaultTickPad=this.tickPad.slice(),this._defaultLabelPad=this.labelPad.slice(),this._defaultLineTickLength=this.lineTickLength.slice()}o.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[a[e]];r.visible?(this.labels[e]=n(r.title),"titlefont"in r&&(r.titlefont.color&&(this.labelColor[e]=i(r.titlefont.color)),r.titlefont.family&&(this.labelFont[e]=r.titlefont.family),r.titlefont.size&&(this.labelSize[e]=r.titlefont.size)),"showline"in r&&(this.lineEnable[e]=r.showline),"linecolor"in r&&(this.lineColor[e]=i(r.linecolor)),"linewidth"in r&&(this.lineWidth[e]=r.linewidth),"showgrid"in r&&(this.gridEnable[e]=r.showgrid),"gridcolor"in r&&(this.gridColor[e]=i(r.gridcolor)),"gridwidth"in r&&(this.gridWidth[e]=r.gridwidth),"log"===r.type?this.zeroEnable[e]=!1:"zeroline"in r&&(this.zeroEnable[e]=r.zeroline),"zerolinecolor"in r&&(this.zeroLineColor[e]=i(r.zerolinecolor)),"zerolinewidth"in r&&(this.zeroLineWidth[e]=r.zerolinewidth),"ticks"in r&&r.ticks?this.lineTickEnable[e]=!0:this.lineTickEnable[e]=!1,"ticklen"in r&&(this.lineTickLength[e]=this._defaultLineTickLength[e]=r.ticklen),"tickcolor"in r&&(this.lineTickColor[e]=i(r.tickcolor)),"tickwidth"in r&&(this.lineTickWidth[e]=r.tickwidth),"tickangle"in r&&(this.tickAngle[e]="auto"===r.tickangle?0:Math.PI*-r.tickangle/180),"showticklabels"in r&&(this.tickEnable[e]=r.showticklabels),"tickfont"in r&&(r.tickfont.color&&(this.tickColor[e]=i(r.tickfont.color)),r.tickfont.family&&(this.tickFont[e]=r.tickfont.family),r.tickfont.size&&(this.tickSize[e]=r.tickfont.size)),"mirror"in r?-1!==["ticks","all","allticks"].indexOf(r.mirror)?(this.lineTickMirror[e]=!0,this.lineMirror[e]=!0):!0===r.mirror?(this.lineTickMirror[e]=!1,this.lineMirror[e]=!0):(this.lineTickMirror[e]=!1,this.lineMirror[e]=!1):this.lineMirror[e]=!1,"showbackground"in r&&!1!==r.showbackground?(this.backgroundEnable[e]=!0,this.backgroundColor[e]=i(r.backgroundcolor)):this.backgroundEnable[e]=!1):(this.tickEnable[e]=!1,this.labelEnable[e]=!1,this.lineEnable[e]=!1,this.lineTickEnable[e]=!1,this.gridEnable[e]=!1,this.zeroEnable[e]=!1,this.backgroundEnable[e]=!1)}},e.exports=function(t){var e=new o;return e.merge(t),e}},{"../../../lib/html2unicode":722,"../../../lib/str2rgbarray":746}],818:[function(t,e,r){"use strict";var n=t("../../../lib"),i=t("../../../components/color"),a=t("../../../registry"),o=t("../../subplot_defaults"),s=t("./axis_defaults"),l=t("./layout_attributes");function c(t,e,r,n){for(var o=r("bgcolor"),l=i.combine(o,n.paper_bgcolor),c=["up","center","eye"],u=0;u<c.length;u++)r("camera."+c[u]+".x"),r("camera."+c[u]+".y"),r("camera."+c[u]+".z");var f=!!r("aspectratio.x")&&!!r("aspectratio.y")&&!!r("aspectratio.z"),h=r("aspectmode",f?"manual":"auto");f||(t.aspectratio=e.aspectratio={x:1,y:1,z:1},"manual"===h&&(e.aspectmode="auto"),t.aspectmode=e.aspectmode),s(t,e,{font:n.font,scene:n.id,data:n.fullData,bgColor:l,calendar:n.calendar,fullLayout:n.fullLayout}),a.getComponentMethod("annotations3d","handleDefaults")(t,e,n),r("dragmode",n.getDfltFromLayout("dragmode")),r("hovermode",n.getDfltFromLayout("hovermode"))}e.exports=function(t,e,r){var i=e._basePlotModules.length>1;o(t,e,r,{type:"gl3d",attributes:l,handleDefaults:c,fullLayout:e,font:e.font,fullData:r,getDfltFromLayout:function(e){if(!i)return n.validate(t[e],l[e])?t[e]:void 0},paper_bgcolor:e.paper_bgcolor,calendar:e.calendar})}},{"../../../components/color":598,"../../../lib":724,"../../../registry":854,"../../subplot_defaults":846,"./axis_defaults":816,"./layout_attributes":819}],819:[function(t,e,r){"use strict";var n=t("./axis_attributes"),i=t("../../domain_attributes"),a=t("../../../lib/extend").extendFlat,o=t("../../../lib").counterRegex;function s(t,e,r){return{x:{valType:"number",dflt:t,editType:"camera"},y:{valType:"number",dflt:e,editType:"camera"},z:{valType:"number",dflt:r,editType:"camera"},editType:"camera"}}e.exports={_arrayAttrRegexps:[o("scene",".annotations",!0)],bgcolor:{valType:"color",dflt:"rgba(0,0,0,0)",editType:"plot"},camera:{up:a(s(0,0,1),{}),center:a(s(0,0,0),{}),eye:a(s(1.25,1.25,1.25),{}),editType:"camera"},domain:i({name:"scene",editType:"plot"}),aspectmode:{valType:"enumerated",values:["auto","cube","data","manual"],dflt:"auto",editType:"plot",impliedEdits:{"aspectratio.x":void 0,"aspectratio.y":void 0,"aspectratio.z":void 0}},aspectratio:{x:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},y:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},z:{valType:"number",min:0,editType:"plot",impliedEdits:{"^aspectmode":"manual"}},editType:"plot",impliedEdits:{aspectmode:"manual"}},xaxis:n,yaxis:n,zaxis:n,dragmode:{valType:"enumerated",values:["orbit","turntable","zoom","pan",!1],dflt:"turntable",editType:"plot"},hovermode:{valType:"enumerated",values:["closest",!1],dflt:"closest",editType:"modebar"},editType:"plot",_deprecated:{cameraposition:{valType:"info_array",editType:"camera"}}}},{"../../../lib":724,"../../../lib/extend":713,"../../domain_attributes":796,"./axis_attributes":815}],820:[function(t,e,r){"use strict";var n=t("../../../lib/str2rgbarray"),i=["xaxis","yaxis","zaxis"];function a(){this.enabled=[!0,!0,!0],this.colors=[[0,0,0,1],[0,0,0,1],[0,0,0,1]],this.drawSides=[!0,!0,!0],this.lineWidth=[1,1,1]}a.prototype.merge=function(t){for(var e=0;e<3;++e){var r=t[i[e]];r.visible?(this.enabled[e]=r.showspikes,this.colors[e]=n(r.spikecolor),this.drawSides[e]=r.spikesides,this.lineWidth[e]=r.spikethickness):(this.enabled[e]=!1,this.drawSides[e]=!1)}},e.exports=function(t){var e=new a;return e.merge(t),e}},{"../../../lib/str2rgbarray":746}],821:[function(t,e,r){"use strict";e.exports=function(t){for(var e=t.axesOptions,r=t.glplot.axesPixels,l=t.fullSceneLayout,c=[[],[],[]],u=0;u<3;++u){var f=l[o[u]];if(f._length=(r[u].hi-r[u].lo)*r[u].pixelsPerDataUnit/t.dataScale[u],Math.abs(f._length)===1/0)c[u]=[];else{f._input_range=f.range.slice(),f.range[0]=r[u].lo/t.dataScale[u],f.range[1]=r[u].hi/t.dataScale[u],f._m=1/(t.dataScale[u]*r[u].pixelsPerDataUnit),f.range[0]===f.range[1]&&(f.range[0]-=1,f.range[1]+=1);var h=f.tickmode;if("auto"===f.tickmode){f.tickmode="linear";var d=f.nticks||i.constrain(f._length/40,4,9);n.autoTicks(f,Math.abs(f.range[1]-f.range[0])/d)}for(var p=n.calcTicks(f),m=0;m<p.length;++m)p[m].x=p[m].x*t.dataScale[u],p[m].text=a(p[m].text);c[u]=p,f.tickmode=h}}e.ticks=c;for(var u=0;u<3;++u){s[u]=.5*(t.glplot.bounds[0][u]+t.glplot.bounds[1][u]);for(var m=0;m<2;++m)e.bounds[m][u]=t.glplot.bounds[m][u]}t.contourLevels=function(t){for(var e=new Array(3),r=0;r<3;++r){for(var n=t[r],i=new Array(n.length),a=0;a<n.length;++a)i[a]=n[a].x;e[r]=i}return e}(c)};var n=t("../../cartesian/axes"),i=t("../../../lib"),a=t("../../../lib/html2unicode"),o=["xaxis","yaxis","zaxis"],s=[0,0,0]},{"../../../lib":724,"../../../lib/html2unicode":722,"../../cartesian/axes":770}],822:[function(t,e,r){"use strict";function n(t,e){var r,n,i=[0,0,0,0];for(r=0;r<4;++r)for(n=0;n<4;++n)i[n]+=t[4*r+n]*e[r];return i}e.exports=function(t,e){return n(t.projection,n(t.view,n(t.model,[e[0],e[1],e[2],1])))}},{}],823:[function(t,e,r){"use strict";var n,i,a=t("gl-plot3d"),o=t("webgl-context"),s=t("has-passive-events"),l=t("../../registry"),c=t("../../lib"),u=t("../../plots/cartesian/axes"),f=t("../../components/fx"),h=t("../../lib/str2rgbarray"),d=t("../../lib/show_no_webgl_msg"),p=t("./camera"),m=t("./project"),v=t("./layout/convert"),g=t("./layout/spikes"),y=t("./layout/tick_marks");function b(t,e,r,l){var h={canvas:r,gl:l,container:t.container,axes:t.axesOptions,spikes:t.spikeOptions,pickRadius:10,snapToData:!0,autoScale:!0,autoBounds:!1};if(t.staticMode){if(!(i||(n=document.createElement("canvas"),i=o({canvas:n,preserveDrawingBuffer:!0,premultipliedAlpha:!0,antialias:!0}))))throw new Error("error creating static canvas/context for image server");h.pixelRatio=t.pixelRatio,h.gl=i,h.canvas=n}try{t.glplot=a(h)}catch(e){d(t)}var v=function(t){if(!1!==t.fullSceneLayout.dragmode){var e={};e[t.id+".camera"]=A(t.camera),t.saveCamera(t.graphDiv.layout),t.graphDiv.emit("plotly_relayout",e)}};if(t.glplot.canvas.addEventListener("mouseup",v.bind(null,t)),t.glplot.canvas.addEventListener("wheel",v.bind(null,t),!!s&&{passive:!1}),t.staticMode||t.glplot.canvas.addEventListener("webglcontextlost",function(t){c.warn("Lost WebGL context."),t.preventDefault()}),!t.camera){var g=t.fullSceneLayout.camera;t.camera=p(t.container,{center:[g.center.x,g.center.y,g.center.z],eye:[g.eye.x,g.eye.y,g.eye.z],up:[g.up.x,g.up.y,g.up.z],zoomMin:.1,zoomMax:100,mode:"orbit"})}return t.glplot.camera=t.camera,t.glplot.oncontextloss=function(){t.recoverContext()},t.glplot.onrender=function(t){var e,r=t.svgContainer,n=t.container.getBoundingClientRect(),i=n.width,a=n.height;r.setAttributeNS(null,"viewBox","0 0 "+i+" "+a),r.setAttributeNS(null,"width",i),r.setAttributeNS(null,"height",a),y(t),t.glplot.axes.update(t.axesOptions);for(var o,s=Object.keys(t.traces),l=null,c=t.glplot.selection,h=0;h<s.length;++h)"skip"!==(e=t.traces[s[h]]).data.hoverinfo&&e.handlePick(c)&&(l=e),e.setContourLevels&&e.setContourLevels();function d(e,r){var n=t.fullSceneLayout[e];return u.tickText(n,n.d2l(r),"hover").text}if(null!==l){var p=m(t.glplot.cameraParams,c.dataCoordinate);e=l.data;var v=c.index,g=f.castHoverinfo(e,t.fullLayout,v),b=d("xaxis",c.traceCoordinate[0]),x=d("yaxis",c.traceCoordinate[1]),_=d("zaxis",c.traceCoordinate[2]);if("all"!==g){var w=g.split("+");-1===w.indexOf("x")&&(b=void 0),-1===w.indexOf("y")&&(x=void 0),-1===w.indexOf("z")&&(_=void 0),-1===w.indexOf("text")&&(c.textLabel=void 0),-1===w.indexOf("name")&&(l.name=void 0)}t.fullSceneLayout.hovermode&&f.loneHover({x:(.5+.5*p[0]/p[3])*i,y:(.5-.5*p[1]/p[3])*a,xLabel:b,yLabel:x,zLabel:_,text:c.textLabel,name:l.name,color:f.castHoverOption(e,v,"bgcolor")||l.color,borderColor:f.castHoverOption(e,v,"bordercolor"),fontFamily:f.castHoverOption(e,v,"font.family"),fontSize:f.castHoverOption(e,v,"font.size"),fontColor:f.castHoverOption(e,v,"font.color")},{container:r,gd:t.graphDiv});var M={x:c.traceCoordinate[0],y:c.traceCoordinate[1],z:c.traceCoordinate[2],data:e._input,fullData:e,curveNumber:e.index,pointNumber:v};f.appendArrayPointValue(M,e,v);var k={points:[M]};c.buttons&&c.distance<5?t.graphDiv.emit("plotly_click",k):t.graphDiv.emit("plotly_hover",k),o=k}else f.loneUnhover(r),t.graphDiv.emit("plotly_unhover",o);t.drawAnnotations(t)}.bind(null,t),t.traces={},!0}function x(t,e){var r=document.createElement("div"),n=t.container;this.graphDiv=t.graphDiv;var i=document.createElementNS("http://www.w3.org/2000/svg","svg");i.style.position="absolute",i.style.top=i.style.left="0px",i.style.width=i.style.height="100%",i.style["z-index"]=20,i.style["pointer-events"]="none",r.appendChild(i),this.svgContainer=i,r.id=t.id,r.style.position="absolute",r.style.top=r.style.left="0px",r.style.width=r.style.height="100%",n.appendChild(r),this.fullLayout=e,this.id=t.id||"scene",this.fullSceneLayout=e[this.id],this.plotArgs=[[],{},{}],this.axesOptions=v(e[this.id]),this.spikeOptions=g(e[this.id]),this.container=r,this.staticMode=!!t.staticPlot,this.pixelRatio=t.plotGlPixelRatio||2,this.dataScale=[1,1,1],this.contourLevels=[[],[],[]],this.convertAnnotations=l.getComponentMethod("annotations3d","convert"),this.drawAnnotations=l.getComponentMethod("annotations3d","draw"),b(this)}var _=x.prototype;_.recoverContext=function(){var t=this,e=this.glplot.gl,r=this.glplot.canvas;this.glplot.dispose(),requestAnimationFrame(function n(){e.isContextLost()?requestAnimationFrame(n):b(t,t.fullLayout,r,e)?t.plot.apply(t,t.plotArgs):c.error("Catastrophic and unrecoverable WebGL error. Context lost.")})};var w=["xaxis","yaxis","zaxis"];function M(t,e,r,n,i,a){var o;if(!Array.isArray(e))return i[0][n]=Math.min(i[0][n],0),void(i[1][n]=Math.max(i[1][n],r-1));for(var s=0;s<(r||e.length);++s)if(Array.isArray(e[s]))for(var l=0;l<e[s].length;++l)o=t.d2l(e[s][l],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o));else o=t.d2l(e[s],0,a),!isNaN(o)&&isFinite(o)&&(i[0][n]=Math.min(i[0][n],o),i[1][n]=Math.max(i[1][n],o))}function k(t,e,r){var n=t.fullSceneLayout;M(n.xaxis,e.x,e._xlength,0,r,e.xcalendar),M(n.yaxis,e.y,e._ylength,1,r,e.ycalendar),M(n.zaxis,e.z,e._zlength,2,r,e.zcalendar)}function A(t){return{up:{x:t.up[0],y:t.up[1],z:t.up[2]},center:{x:t.center[0],y:t.center[1],z:t.center[2]},eye:{x:t.eye[0],y:t.eye[1],z:t.eye[2]}}}_.plot=function(t,e,r){if(this.plotArgs=[t,e,r],!this.glplot.contextLost){var n,i,a,o,s,l,c=e[this.id],u=r[this.id];c.bgcolor?this.glplot.clearColor=h(c.bgcolor):this.glplot.clearColor=[0,0,0,0],this.glplot.snapToData=!0,this.fullLayout=e,this.fullSceneLayout=c,this.glplotLayout=c,this.axesOptions.merge(c),this.spikeOptions.merge(c),this.setCamera(c.camera),this.updateFx(c.dragmode,c.hovermode),this.glplot.update({}),this.setConvert(s),t?Array.isArray(t)||(t=[t]):t=[];var f=[[1/0,1/0,1/0],[-1/0,-1/0,-1/0]];for(a=0;a<t.length;++a)!0===(n=t[a]).visible&&k(this,n,f);var d=[1,1,1];for(o=0;o<3;++o)f[0][o]>f[1][o]?d[o]=1:f[1][o]===f[0][o]?d[o]=1:d[o]=1/(f[1][o]-f[0][o]);for(this.dataScale=d,this.convertAnnotations(this),a=0;a<t.length;++a)!0===(n=t[a]).visible&&((i=this.traces[n.uid])?i.update(n):(i=n._module.plot(this,n),this.traces[n.uid]=i),i.name=n.name);var p=Object.keys(this.traces);t:for(a=0;a<p.length;++a){for(o=0;o<t.length;++o)if(t[o].uid===p[a]&&!0===t[o].visible)continue t;(i=this.traces[p[a]]).dispose(),delete this.traces[p[a]]}this.glplot.objects.sort(function(t,e){return t._trace.data.index-e._trace.data.index});var m=[[0,0,0],[0,0,0]],v=[],g={};for(a=0;a<3;++a){if((l=(s=c[w[a]]).type)in g?(g[l].acc*=d[a],g[l].count+=1):g[l]={acc:d[a],count:1},s.autorange){m[0][a]=1/0,m[1][a]=-1/0;var y=this.glplot.objects,b=this.fullSceneLayout.annotations||[],x=s._name.charAt(0);for(o=0;o<y.length;o++){var _=y[o].bounds;m[0][a]=Math.min(m[0][a],_[0][a]/d[a]),m[1][a]=Math.max(m[1][a],_[1][a]/d[a])}for(o=0;o<b.length;o++){var M=b[o];if(M.visible){var A=s.r2l(M[x]);m[0][a]=Math.min(m[0][a],A),m[1][a]=Math.max(m[1][a],A)}}if("rangemode"in s&&"tozero"===s.rangemode&&(m[0][a]=Math.min(m[0][a],0),m[1][a]=Math.max(m[1][a],0)),m[0][a]>m[1][a])m[0][a]=-1,m[1][a]=1;else{var T=m[1][a]-m[0][a];m[0][a]-=T/32,m[1][a]+=T/32}}else{var E=s.range;m[0][a]=s.r2l(E[0]),m[1][a]=s.r2l(E[1])}m[0][a]===m[1][a]&&(m[0][a]-=1,m[1][a]+=1),v[a]=m[1][a]-m[0][a],this.glplot.bounds[0][a]=m[0][a]*d[a],this.glplot.bounds[1][a]=m[1][a]*d[a]}var S=[1,1,1];for(a=0;a<3;++a){var L=g[l=(s=c[w[a]]).type];S[a]=Math.pow(L.acc,1/L.count)/d[a]}var C;if("auto"===c.aspectmode)C=Math.max.apply(null,S)/Math.min.apply(null,S)<=4?S:[1,1,1];else if("cube"===c.aspectmode)C=[1,1,1];else if("data"===c.aspectmode)C=S;else{if("manual"!==c.aspectmode)throw new Error("scene.js aspectRatio was not one of the enumerated types");var P=c.aspectratio;C=[P.x,P.y,P.z]}c.aspectratio.x=u.aspectratio.x=C[0],c.aspectratio.y=u.aspectratio.y=C[1],c.aspectratio.z=u.aspectratio.z=C[2],this.glplot.aspect=C;var z=c.domain||null,O=e._size||null;if(z&&O){var D=this.container.style;D.position="absolute",D.left=O.l+z.x[0]*O.w+"px",D.top=O.t+(1-z.y[1])*O.h+"px",D.width=O.w*(z.x[1]-z.x[0])+"px",D.height=O.h*(z.y[1]-z.y[0])+"px"}this.glplot.redraw()}},_.destroy=function(){this.glplot&&(this.camera.mouseListener.enabled=!1,this.container.removeEventListener("wheel",this.camera.wheelListener),this.camera=this.glplot.camera=null,this.glplot.dispose(),this.container.parentNode.removeChild(this.container),this.glplot=null)},_.getCamera=function(){return this.glplot.camera.view.recalcMatrix(this.camera.view.lastT()),A(this.glplot.camera)},_.setCamera=function(t){var e;this.glplot.camera.lookAt.apply(this,[[(e=t).eye.x,e.eye.y,e.eye.z],[e.center.x,e.center.y,e.center.z],[e.up.x,e.up.y,e.up.z]])},_.saveCamera=function(t){var e=this.getCamera(),r=c.nestedProperty(t,this.id+".camera"),n=r.get(),i=!1;function a(t,e,r,n){var i=["up","center","eye"],a=["x","y","z"];return e[i[r]]&&t[i[r]][a[n]]===e[i[r]][a[n]]}if(void 0===n)i=!0;else for(var 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e=t._subplots.mapbox,r=0;r<e.length;r++){t[e[r]]._subplot.updateFx(t)}}},{"../../constants/xmlns_namespaces":704,"../../lib":724,"../../plots/get_data":807,"./constants":825,"./layout_attributes":829,"./layout_defaults":830,"./mapbox":831,"mapbox-gl":315}],828:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./convert_text_opts");function a(t,e){this.mapbox=t,this.map=t.map,this.uid=t.uid+"-layer"+e,this.idSource=this.uid+"-source",this.idLayer=this.uid+"-layer",this.sourceType=null,this.source=null,this.layerType=null,this.below=null,this.visible=!1}var o=a.prototype;function s(t){var e=t.source;return n.isPlainObject(e)||"string"==typeof e&&e.length>0}o.update=function(t){this.visible?this.needsNewSource(t)?(this.updateLayer(t),this.updateSource(t)):this.needsNewLayer(t)&&this.updateLayer(t):(this.updateSource(t),this.updateLayer(t)),this.updateStyle(t),this.visible=s(t)},o.needsNewSource=function(t){return this.sourceType!==t.sourcetype||this.source!==t.source||this.layerType!==t.type},o.needsNewLayer=function(t){return this.layerType!==t.type||this.below!==t.below},o.updateSource=function(t){var e=this.map;if(e.getSource(this.idSource)&&e.removeSource(this.idSource),this.sourceType=t.sourcetype,this.source=t.source,s(t)){var r=function(t){var e,r=t.sourcetype,n=t.source,i={type:r};"geojson"===r?e="data":"vector"===r&&(e="string"==typeof n?"url":"tiles");return i[e]=n,i}(t);e.addSource(this.idSource,r)}},o.updateLayer=function(t){var e=this.map;if(e.getLayer(this.idLayer)&&e.removeLayer(this.idLayer),this.layerType=t.type,s(t)){e.addLayer({id:this.idLayer,source:this.idSource,"source-layer":t.sourcelayer||"",type:t.type},t.below);this.mapbox.setOptions(this.idLayer,"setLayoutProperty",{visibility:"visible"})}},o.updateStyle=function(t){var e=function(t){var e={},r={};switch(t.type){case"circle":n.extendFlat(r,{"circle-radius":t.circle.radius,"circle-color":t.color,"circle-opacity":t.opacity});break;case"line":n.extendFlat(r,{"line-width":t.line.width,"line-color":t.color,"line-opacity":t.opacity});break;case"fill":n.extendFlat(r,{"fill-color":t.color,"fill-outline-color":t.fill.outlinecolor,"fill-opacity":t.opacity});break;case"symbol":var a=t.symbol,o=i(a.textposition,a.iconsize);n.extendFlat(e,{"icon-image":a.icon+"-15","icon-size":a.iconsize/10,"text-field":a.text,"text-size":a.textfont.size,"text-anchor":o.anchor,"text-offset":o.offset}),n.extendFlat(r,{"icon-color":t.color,"text-color":a.textfont.color,"text-opacity":t.opacity})}return{layout:e,paint:r}}(t);s(t)&&(this.mapbox.setOptions(this.idLayer,"setLayoutProperty",e.layout),this.mapbox.setOptions(this.idLayer,"setPaintProperty",e.paint))},o.dispose=function(){var t=this.map;t.removeLayer(this.idLayer),t.removeSource(this.idSource)},e.exports=function(t,e,r){var n=new a(t,e);return n.update(r),n}},{"../../lib":724,"./convert_text_opts":826}],829:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/color").defaultLine,a=t("../domain_attributes"),o=t("../font_attributes"),s=t("../../traces/scatter/attributes").textposition,l=t("../../plot_api/edit_types").overrideAll,c=o({});c.family.dflt="Open Sans Regular, Arial Unicode MS 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n=t("mapbox-gl"),i=t("../../components/fx"),a=t("../../lib"),o=t("../../components/dragelement"),s=t("../cartesian/select"),l=t("./constants"),c=t("./layout_attributes"),u=t("./layers");function f(t){this.id=t.id,this.gd=t.gd,this.container=t.container,this.isStatic=t.staticPlot;var e=t.fullLayout;this.uid=e._uid+"-"+this.id,this.opts=e[this.id],this.div=null,this.xaxis=null,this.yaxis=null,this.createFramework(e),this.map=null,this.accessToken=null,this.styleObj=null,this.traceHash={},this.layerList=[]}var h=f.prototype;function d(t){var e=c.style.values,r=c.style.dflt,n={};return a.isPlainObject(t)?(n.id=t.id,n.style=t):"string"==typeof t?(n.id=t,n.style=-1!==e.indexOf(t)?p(t):t):(n.id=r,n.style=p(r)),n}function p(t){return l.styleUrlPrefix+t+"-"+l.styleUrlSuffix}function m(t){return[t.lon,t.lat]}e.exports=function(t){return new f(t)},h.plot=function(t,e,r){var n,i=this,a=i.opts=e[this.id];i.map&&a.accesstoken!==i.accessToken&&(i.map.remove(),i.map=null,i.styleObj=null,i.traceHash=[],i.layerList={}),n=i.map?new Promise(function(r,n){i.updateMap(t,e,r,n)}):new Promise(function(r,n){i.createMap(t,e,r,n)}),r.push(n)},h.createMap=function(t,e,r,o){var s=this,c=s.gd,u=s.opts,f=s.styleObj=d(u.style);s.accessToken=u.accesstoken;var h=s.map=new n.Map({container:s.div,style:f.style,center:m(u.center),zoom:u.zoom,bearing:u.bearing,pitch:u.pitch,interactive:!s.isStatic,preserveDrawingBuffer:s.isStatic,doubleClickZoom:!1,boxZoom:!1}),p=l.controlContainerClassName,v=s.div.getElementsByClassName(p)[0];function g(){i.loneUnhover(e._toppaper)}s.div.removeChild(v),h._canvas.canvas.style.left="0px",h._canvas.canvas.style.top="0px",s.rejectOnError(o),h.once("load",function(){s.updateData(t),s.updateLayout(e),s.resolveOnRender(r)}),s.isStatic||(h.on("moveend",function(t){if(s.map){var e=s.getView();if(u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,t.originalEvent){var r={};r[s.id]=a.extendFlat({},e),c.emit("plotly_relayout",r)}}}),h.on("mousemove",function(t){var e=s.div.getBoundingClientRect();t.clientX=t.point.x+e.left,t.clientY=t.point.y+e.top,t.target.getBoundingClientRect=function(){return e},s.xaxis.p2c=function(){return t.lngLat.lng},s.yaxis.p2c=function(){return t.lngLat.lat},i.hover(c,t,s.id)}),h.on("click",function(t){i.click(c,t.originalEvent)}),h.on("dragstart",g),h.on("zoomstart",g),h.on("dblclick",function(){var t=s.viewInitial;h.setCenter(m(t.center)),h.setZoom(t.zoom),h.setBearing(t.bearing),h.setPitch(t.pitch);var e=s.getView();u._input.center=u.center=e.center,u._input.zoom=u.zoom=e.zoom,u._input.bearing=u.bearing=e.bearing,u._input.pitch=u.pitch=e.pitch,c.emit("plotly_doubleclick",null)}))},h.updateMap=function(t,e,r,n){var i=this,a=i.map;i.rejectOnError(n);var o=d(i.opts.style);i.styleObj.id!==o.id?(i.styleObj=o,a.setStyle(o.style),a.style.once("load",function(){i.traceHash={},i.updateData(t),i.updateLayout(e),i.resolveOnRender(r)})):(i.updateData(t),i.updateLayout(e),i.resolveOnRender(r))},h.updateData=function(t){var e,r,n,i,a=this.traceHash;for(n=0;n<t.length;n++){var o=t[n];(e=a[(r=o[0].trace).uid])?e.update(o):r._module&&(a[r.uid]=r._module.plot(this,o))}var s=Object.keys(a);t:for(n=0;n<s.length;n++){var l=s[n];for(i=0;i<t.length;i++)if(l===(r=t[i][0].trace).uid)continue t;(e=a[l]).dispose(),delete a[l]}},h.updateLayout=function(t){var e=this.map,r=this.opts;e.setCenter(m(r.center)),e.setZoom(r.zoom),e.setBearing(r.bearing),e.setPitch(r.pitch),this.updateLayers(),this.updateFramework(t),this.updateFx(t),this.map.resize()},h.resolveOnRender=function(t){var e=this.map;e.on("render",function r(){e.loaded()&&(e.off("render",r),t())})},h.rejectOnError=function(t){var e=this.map;function r(){t(new 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y=h.select(".legend-marks").selectAll("path.legend-mark").data(o);y.enter().append("path").classed("legend-mark",!0),y.attr({transform:function(t,e){return"translate("+[c/2,v(e)+c/2]+")"},d:function(t,e){var r,i,a,o=t.symbol;return a=3*(i=c),"line"===(r=o)?"M"+[[-i/2,-i/12],[i/2,-i/12],[i/2,i/12],[-i/2,i/12]]+"Z":-1!=n.svg.symbolTypes.indexOf(r)?n.svg.symbol().type(r).size(a)():n.svg.symbol().type("square").size(a)()},fill:function(t,e){return m(e)}}),y.exit().remove()}var b=n.svg.axis().scale(v).orient("right"),x=h.select("g.legend-axis").attr({transform:"translate("+[u?e.colorBandWidth:c,c/2]+")"}).call(b);return x.selectAll(".domain").style({fill:"none",stroke:"none"}),x.selectAll("line").style({fill:"none",stroke:u?e.textColor:"none"}),x.selectAll("text").style({fill:e.textColor,"font-size":e.fontSize}).text(function(t,e){return o[e].name}),r}return r.config=function(e){return arguments.length?(i(t,e),this):t},n.rebind(r,e,"on"),r},o.Legend.defaultConfig=function(t,e){return{data:["a","b","c"],legendConfig:{elements:[{symbol:"line",color:"red"},{symbol:"square",color:"yellow"},{symbol:"diamond",color:"limegreen"}],height:150,colorBandWidth:30,fontSize:12,container:"body",isContinuous:null,textColor:"grey",reverseOrder:!1}}},o.tooltipPanel=function(){var t,e,r,a={container:null,hasTick:!1,fontSize:12,color:"white",padding:5},s="tooltip-"+o.tooltipPanel.uid++,l=10,c=function(){var n=(t=a.container.selectAll("g."+s).data([0])).enter().append("g").classed(s,!0).style({"pointer-events":"none",display:"none"});return r=n.append("path").style({fill:"white","fill-opacity":.9}).attr({d:"M0 0"}),e=n.append("text").attr({dx:a.padding+l,dy:.3*+a.fontSize}),c};return c.text=function(i){var o=n.hsl(a.color).l,s=o>=.5?"#aaa":"white",u=o>=.5?"black":"white",f=i||"";e.style({fill:u,"font-size":a.fontSize+"px"}).text(f);var h=a.padding,d=e.node().getBBox(),p={fill:a.color,stroke:s,"stroke-width":"2px"},m=d.width+2*h+l,v=d.height+2*h;return r.attr({d:"M"+[[l,-v/2],[l,-v/4],[a.hasTick?0:l,0],[l,v/4],[l,v/2],[m,v/2],[m,-v/2]].join("L")+"Z"}).style(p),t.attr({transform:"translate("+[l,-v/2+2*h]+")"}),t.style({display:"block"}),c},c.move=function(e){if(t)return t.attr({transform:"translate("+[e[0],e[1]]+")"}).style({display:"block"}),c},c.hide=function(){if(t)return t.style({display:"none"}),c},c.show=function(){if(t)return t.style({display:"block"}),c},c.config=function(t){return i(a,t),c},c},o.tooltipPanel.uid=1,o.adapter={},o.adapter.plotly=function(){var t={convert:function(t,e){var r={};if(t.data&&(r.data=t.data.map(function(t,r){var n=i({},t);return[[n,["marker","color"],["color"]],[n,["marker","opacity"],["opacity"]],[n,["marker","line","color"],["strokeColor"]],[n,["marker","line","dash"],["strokeDash"]],[n,["marker","line","width"],["strokeSize"]],[n,["marker","symbol"],["dotType"]],[n,["marker","size"],["dotSize"]],[n,["marker","barWidth"],["barWidth"]],[n,["line","interpolation"],["lineInterpolation"]],[n,["showlegend"],["visibleInLegend"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e||delete n.marker,e&&delete n.groupId,e?("LinePlot"===n.geometry?(n.type="scatter",!0===n.dotVisible?(delete n.dotVisible,n.mode="lines+markers"):n.mode="lines"):"DotPlot"===n.geometry?(n.type="scatter",n.mode="markers"):"AreaChart"===n.geometry?n.type="area":"BarChart"===n.geometry&&(n.type="bar"),delete 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s=i({},t.layout);if([[s,["plot_bgcolor"],["backgroundColor"]],[s,["showlegend"],["showLegend"]],[s,["radialaxis"],["radialAxis"]],[s,["angularaxis"],["angularAxis"]],[s.angularaxis,["showline"],["gridLinesVisible"]],[s.angularaxis,["showticklabels"],["labelsVisible"]],[s.angularaxis,["nticks"],["ticksCount"]],[s.angularaxis,["tickorientation"],["tickOrientation"]],[s.angularaxis,["ticksuffix"],["ticksSuffix"]],[s.angularaxis,["range"],["domain"]],[s.angularaxis,["endpadding"],["endPadding"]],[s.radialaxis,["showline"],["gridLinesVisible"]],[s.radialaxis,["tickorientation"],["tickOrientation"]],[s.radialaxis,["ticksuffix"],["ticksSuffix"]],[s.radialaxis,["range"],["domain"]],[s.angularAxis,["showline"],["gridLinesVisible"]],[s.angularAxis,["showticklabels"],["labelsVisible"]],[s.angularAxis,["nticks"],["ticksCount"]],[s.angularAxis,["tickorientation"],["tickOrientation"]],[s.angularAxis,["ticksuffix"],["ticksSuffix"]],[s.angularAxis,["range"],["domain"]],[s.angularAxis,["endpadding"],["endPadding"]],[s.radialAxis,["showline"],["gridLinesVisible"]],[s.radialAxis,["tickorientation"],["tickOrientation"]],[s.radialAxis,["ticksuffix"],["ticksSuffix"]],[s.radialAxis,["range"],["domain"]],[s.font,["outlinecolor"],["outlineColor"]],[s.legend,["traceorder"],["reverseOrder"]],[s,["labeloffset"],["labelOffset"]],[s,["defaultcolorrange"],["defaultColorRange"]]].forEach(function(t,r){o.util.translator.apply(null,t.concat(e))}),e?(void 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r=t._fullLayout,n="clip"+r._uid+e;this.clipIds.circle=n+"-circle",this.clipPaths.circle=r._clips.append("clipPath").attr("id",this.clipIds.circle),this.clipPaths.circle.append("path"),this.framework=r._polarlayer.append("g").attr("class",e),this.radialTickLayout=null,this.angularTickLayout=null}var E=T.prototype;function S(t,e,r){f.setConvert(t,r),t._min=e._min,t._max=e._max,t.setScale()}function L(t){var e=t.ticks+String(t.ticklen)+String(t.showticklabels);return"side"in t&&(e+=t.side),e}function C(t,e){if(z(e))return c.symbolFuncs[0](t);var r=t*Math.cos(x(e[0])),n=-t*Math.sin(x(e[0])),i=t*Math.cos(x(e[1])),a=-t*Math.sin(x(e[1]));return"M"+[r,n]+"A"+[t,t]+" "+(Math.abs(e[1]-e[0])<=180?[0,0,0]:[0,1,0])+" "+[i,a]}function P(t,e){return C(t,e)+(z(e)?"":"L0,0Z")}function z(t){return 360===Math.abs(t[1]-t[0])}function O(t,e,r){return e?(t.attr("display",null),t.attr(r)):t&&t.attr("display","none"),t}function D(t,e){return"translate("+t+","+e+")"}function I(t){return"rotate("+t+")"}function 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e,r,n,i,a=t[0],o=t[1]-a,s=w(a),l=s+o,c=Math.cos(x(s)),u=Math.sin(x(s)),f=Math.cos(x(l)),h=Math.sin(x(l));i=s<=90&&l>=90||s>90&&l>=450?1:u<=0&&h<=0?0:Math.max(u,h);e=s<=180&&l>=180||s>180&&l>=540?-1:c>=0&&f>=0?0:Math.min(c,f);r=s<=270&&l>=270||s>270&&l>=630?-1:u>=0&&h>=0?0:Math.min(u,h);n=l>=360?1:c<=0&&f<=0?0:Math.max(c,f);return[e,r,n,i]}(g),b=y[2]-y[0],_=y[3]-y[1],M=v/m,k=Math.abs(_/b);M>k?(s=m,p=(v-(u=m*k))/i.h/2,h=[a[0],a[1]],d=[o[0]+p,o[1]-p]):(u=v,p=(m-(s=v/k))/i.w/2,h=[a[0]+p,a[1]-p],d=[o[0],o[1]]),r.xLength2=s,r.yLength2=u,r.xDomain2=h,r.yDomain2=d;var A=r.xOffset2=i.l+i.w*h[0],T=r.yOffset2=i.t+i.h*(1-d[1]),E=r.radius=s/b,S=r.cx=A-E*y[0],L=r.cy=T+E*y[3],C=r.cxx=S-A,z=r.cyy=L-T;r.updateRadialAxis(t,e),r.updateRadialAxisTitle(t,e),r.updateAngularAxis(t,e);var O=r.radialAxis.range,I=O[1]-O[0],R=r.xaxis={type:"linear",_id:"x",range:[y[0]*I,y[2]*I],domain:h};f.setConvert(R,t),R.setScale();var 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r=this,i=r.gd,l=r.layers,u=r.radius,p=r.cx,m=r.cy,v=r.cxx,y=r.cyy,b=e.sector,w=A.angularDragBoxSize,T=d.makeDragger(l,"path","angulardrag","move"),E={element:T,gd:i};function S(t,e){return Math.atan2(y+w-e,t-v-w)}n.select(T).attr("d",function(t,e,r){var n,i,a,o=Math.abs(r[1]-r[0])<=180?0:1;function s(t,e){return[t*Math.cos(e),-t*Math.sin(e)]}function l(t,e,r){return"A"+[t,t]+" "+[0,o,r]+" "+s(t,e)}return z(r)?(n=0,a=2*Math.PI,i=Math.PI,"M"+s(t,n)+l(t,i,0)+l(t,a,0)+"ZM"+s(e,n)+l(e,i,1)+l(e,a,1)+"Z"):(n=x(r[0]),a=x(r[1]),"M"+s(t,n)+"L"+s(e,n)+l(e,a,0)+"L"+s(t,a)+l(t,n,1)+"Z")}(u,u+w,b)).attr("transform",D(p,m)).call(g,"move");var L,C,P,O,R,N,F=l.frontplot.select(".scatterlayer").selectAll(".trace"),j=F.selectAll(".point"),B=F.selectAll(".textpoint");function U(t,e){var a=S(L+t,C+e),u=_(a-N);O=P+u,l.frontplot.attr("transform",D(r.xOffset2,r.yOffset2)+I([-u,v,y])),r.clipPaths.circle.select("path").attr("transform",D(v,y)+I(u)),j.each(function(){var 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n={};n.attributes=t("./attributes"),n.layoutAttributes=t("./layout_attributes"),n.supplyDefaults=t("./defaults").supplyDefaults,n.supplyLayoutDefaults=t("./layout_defaults").supplyLayoutDefaults,n.calc=t("./calc"),n.setPositions=t("./set_positions").setPositions,n.plot=t("./plot").plot,n.style=t("./style"),n.hoverPoints=t("./hover").hoverPoints,n.selectPoints=t("./select"),n.moduleType="trace",n.name="box",n.basePlotModule=t("../../plots/cartesian"),n.categories=["cartesian","symbols","oriented","box-violin","showLegend"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"./attributes":877,"./calc":878,"./defaults":879,"./hover":880,"./layout_attributes":882,"./layout_defaults":883,"./plot":884,"./select":885,"./set_positions":886,"./style":887}],882:[function(t,e,r){"use 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.wdPos||0,h=a.bPosPxOffset||0,d=r.whiskerwidth||0,p=r.notched||!1,m=p?1-2*r.notchwidth:1;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.box").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","box").each(function(t){var e=t.pos,a=l.c2p(e+u,!0)+h,v=l.c2p(e+u-o,!0)+h,g=l.c2p(e+u+s,!0)+h,y=l.c2p(e+u-f,!0)+h,b=l.c2p(e+u+f,!0)+h,x=l.c2p(e+u-o*m,!0)+h,_=l.c2p(e+u+s*m,!0)+h,w=c.c2p(t.q1,!0),M=c.c2p(t.q3,!0),k=i.constrain(c.c2p(t.med,!0),Math.min(w,M)+1,Math.max(w,M)-1),A=c.c2p(!1===r.boxpoints?t.min:t.lf,!0),T=c.c2p(!1===r.boxpoints?t.max:t.uf,!0),E=c.c2p(t.ln,!0),S=c.c2p(t.un,!0);"h"===r.orientation?n.select(this).attr("d","M"+k+","+x+"V"+_+"M"+w+","+v+"V"+g+(p?"H"+E+"L"+k+","+_+"L"+S+","+g:"")+"H"+M+"V"+v+(p?"H"+S+"L"+k+","+x+"L"+E+","+v:"")+"ZM"+w+","+a+"H"+A+"M"+M+","+a+"H"+T+(0===d?"":"M"+A+","+y+"V"+b+"M"+T+","+y+"V"+b)):n.select(this).attr("d","M"+x+","+k+"H"+_+"M"+v+","+w+"H"+g+(p?"V"+E+"L"+_+","+k+"L"+g+","+S:"")+"V"+M+"H"+v+(p?"V"+S+"L"+x+","+k+"L"+v+","+E:"")+"ZM"+a+","+w+"V"+A+"M"+a+","+M+"V"+T+(0===d?"":"M"+y+","+A+"H"+b+"M"+y+","+T+"H"+b))})}function f(t,e,r,n){var u=e.x,f=e.y,h=n.bdPos,d=n.bPos,p=r.boxpoints||r.points;o=2e9,t.selectAll("g.points").data(function(t){return 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o,s,l=e.pos,c=e.val,u=a.bPos,f=a.bPosPxOffset||0;Array.isArray(a.bdPos)?(o=a.bdPos[0],s=a.bdPos[1]):(o=a.bdPos,s=a.bdPos),t.selectAll("path.mean").data(i.identity).enter().append("path").attr("class","mean").style({fill:"none","vector-effect":"non-scaling-stroke"}).each(function(t){var e=l.c2p(t.pos+u,!0)+f,i=l.c2p(t.pos+u-o,!0)+f,a=l.c2p(t.pos+u+s,!0)+f,h=c.c2p(t.mean,!0),d=c.c2p(t.mean-t.sd,!0),p=c.c2p(t.mean+t.sd,!0);"h"===r.orientation?n.select(this).attr("d","M"+h+","+i+"V"+a+("sd"===r.boxmean?"m0,0L"+d+","+e+"L"+h+","+i+"L"+p+","+e+"Z":"")):n.select(this).attr("d","M"+i+","+h+"H"+a+("sd"===r.boxmean?"m0,0L"+e+","+d+"L"+i+","+h+"L"+e+","+p+"Z":""))})}e.exports={plot:function(t,e,r){var i=t._fullLayout,a=e.xaxis,o=e.yaxis;e.plot.select(".boxlayer").selectAll("g.trace.boxes").data(r).enter().append("g").attr("class","trace boxes").each(function(t){var e,r,s=t[0],l=s.t,c=s.trace,d=s.node3=n.select(this),p=i._numBoxes,m="group"===i.boxmode&&p>1,v=l.dPos*(1-i.boxgap)*(1-i.boxgroupgap)/(m?p:1),g=m?2*l.dPos*((l.num+.5)/p-.5)*(1-i.boxgap):0,y=v*c.whiskerwidth;!0!==c.visible||l.empty?n.select(this).remove():("h"===c.orientation?(e=o,r=a):(e=a,r=o),l.bPos=g,l.bdPos=v,l.wdPos=y,u(d,{pos:e,val:r},c,l),c.boxpoints&&f(d,{x:a,y:o},c,l),c.boxmean&&h(d,{pos:e,val:r},c,l))})},plotBoxAndWhiskers:u,plotPoints:f,plotBoxMean:h}},{"../../components/drawing":623,"../../lib":724,d3:128}],885:[function(t,e,r){"use strict";e.exports=function(t,e){var r,n,i=t.cd,a=t.xaxis,o=t.yaxis,s=[];if(!1===e)for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++)i[r].pts[n].selected=0;else for(r=0;r<i.length;r++)for(n=0;n<(i[r].pts||[]).length;n++){var l=i[r].pts[n],c=a.c2p(l.x),u=o.c2p(l.y);e.contains([c,u])?(s.push({pointNumber:l.i,x:a.c2d(l.x),y:o.c2d(l.y)}),l.selected=1):l.selected=0}return s}},{}],886:[function(t,e,r){"use strict";var n=t("../../plots/cartesian/axes"),i=t("../../lib"),a=["v","h"];function o(t,e,r,a,o){var s,l,c,u=e.calcdata,f=e._fullLayout,h=[],d="violin"===t?"_numViolins":"_numBoxes";for(s=0;s<r.length;s++)for(c=u[r[s]],l=0;l<c.length;l++)h.push(c[l].pos);if(h.length){var p=i.distinctVals(h),m=p.minDiff/2;for(h.length===p.vals.length&&(f[d]=1),n.minDtick(a,p.minDiff,p.vals[0],!0),s=0;s<r.length;s++)(c=u[r[s]])[0].t.dPos=m;var v=(1-f[t+"gap"])*(1-f[t+"groupgap"])*m/f[d];n.expand(a,p.vals,{vpadminus:m+o[0]*v,vpadplus:m+o[1]*v})}}e.exports={setPositions:function(t,e){for(var r=t.calcdata,n=e.xaxis,i=e.yaxis,s=0;s<a.length;s++){for(var l=a[s],c="h"===l?i:n,u=[],f=0,h=0,d=0;d<r.length;d++){var p=r[d],m=p[0].t,v=p[0].trace;!0!==v.visible||"box"!==v.type||m.empty||v.orientation!==l||v.xaxis!==n._id||v.yaxis!==i._id||(u.push(d),!1!==v.boxpoints&&(f=Math.max(f,v.jitter-v.pointpos-1),h=Math.max(h,v.jitter+v.pointpos-1)))}o("box",t,u,c,[f,h])}},setPositionOffset:o}},{"../../lib":724,"../../plots/cartesian/axes":770}],887:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/color"),a=t("../../components/drawing");e.exports=function(t,e){var r=e?e[0].node3:n.select(t).selectAll("g.trace.boxes");r.style("opacity",function(t){return t[0].trace.opacity}),r.each(function(e){var r=n.select(this),o=e[0].trace,s=o.line.width;r.selectAll("path.box").style("stroke-width",s+"px").call(i.stroke,o.line.color).call(i.fill,o.fillcolor),r.selectAll("path.mean").style({"stroke-width":s,"stroke-dasharray":2*s+"px,"+s+"px"}).call(i.stroke,o.line.color);var l=r.selectAll("path.point");a.pointStyle(l,o,t),a.selectedPointStyle(l,o)})}},{"../../components/color":598,"../../components/drawing":623,d3:128}],888:[function(t,e,r){"use strict";var n=t("../../lib").extendFlat,i=t("../ohlc/attributes"),a=t("../box/attributes");function o(t){return{name:i.increasing.name,showlegend:i.increasing.showlegend,line:{color:n({},a.line.color,{dflt:t}),width:a.line.width,editType:"style"},fillcolor:a.fillcolor,editType:"style"}}e.exports={x:i.x,open:i.open,high:i.high,low:i.low,close:i.close,line:{width:n({},a.line.width,{}),editType:"style"},increasing:o(i.increasing.line.color.dflt),decreasing:o(i.decreasing.line.color.dflt),text:i.text,whiskerwidth:n({},a.whiskerwidth,{dflt:0})}},{"../../lib":724,"../box/attributes":877,"../ohlc/attributes":1006}],889:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../ohlc/ohlc_defaults"),a=t("../ohlc/direction_defaults"),o=t("../ohlc/helpers"),s=t("./attributes");function 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c=t[i],u=c.dim1,f=u.crossfilterDimensionIndex,h=c.canvasX,p=c.canvasY,g=c.dim2.crossfilterDimensionIndex,y=c.panelSizeX,b=c.panelSizeY,w=h+y;if(e||!V[f]||V[f][0]!==h||V[f][1]!==w){V[f]=[h,w];var M=q(f,g,h,p,y,b,u.crossfilterDimensionIndex,r||u.scatter?1:0,i,a,o);E.clearOnly=n,v(F,B,E,e?d.blockLineCount:C,C,M)}}},readPixel:function(t,e){return F.read({x:t,y:e,width:1,height:1,data:p}),p},readPixels:function(t,e,r,n){var i=new Uint8Array(4*r*n);return F.read({x:t,y:e,width:r,height:n,data:i}),i},destroy:function(){t.style["pointer-events"]="none",j.destroy()}}}},{"./constants":1017,glslify:253}],1021:[function(t,e,r){"use strict";var n=t("./lines"),i=t("./constants"),a=t("../../lib"),o=t("d3"),s=t("../../components/drawing"),l=t("../../lib/gup").keyFun,c=t("../../lib/gup").repeat,u=t("../../lib/gup").unwrap;function f(t){return!("visible"in t)||t.visible}function h(t){var e=t.range?t.range[0]:o.min(t.values),r=t.range?t.range[1]:o.max(t.values);return!isNaN(e)&&isFinite(e)||(e=0),!isNaN(r)&&isFinite(r)||(r=0),e===r&&(void 0===e?(e=0,r=1):0===e?(e-=1,r+=1):(e*=.9,r*=1.1)),[e,r]}function d(t,e){var r,n,i,a,o;for(r=0,i=1/0,a=(n=t.range())[0];r<n.length;r++){if((o=Math.abs(n[r]-e))>i)return a;i=o,a=n[r]}return n[n.length-1]}function p(t){return o.scale.linear().domain(h(t))}function m(t,e,r){var n=u(e),s=n.trace,l=n.lineColor,c=n.cscale,h=s.line,d=s.domain,m=s.dimensions,v=t.width,g=s.labelfont,y=s.tickfont,b=s.rangefont,x=a.extendDeep({},h,{color:l.map(p({values:l,range:[h.cmin,h.cmax]})),blockLineCount:i.blockLineCount,canvasOverdrag:i.overdrag*i.canvasPixelRatio}),_=Math.floor(v*(d.x[1]-d.x[0])),w=Math.floor(t.height*(d.y[1]-d.y[0])),M=t.margin||{l:80,r:80,t:100,b:80},k=_,A=w;return{key:r,colCount:m.filter(f).length,dimensions:m,tickDistance:i.tickDistance,unitToColor:function(t){var e=t.map(function(t){return t[0]}),r=t.map(function(t){return 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m[e.label]=(c||0)+1,{key:e.label+(c?"__"+c:""),label:e.label,tickFormat:e.tickformat,tickvals:e.tickvals,ticktext:e.ticktext,ordinal:!!e.tickvals,scatter:i.scatter||e.scatter,xIndex:n,crossfilterDimensionIndex:n,visibleIndex:e._index,height:r,values:e.values,paddedUnitValues:e.values.map(l).map(u),xScale:s,x:s(n),canvasX:s(n)*a,unitScale:function(t,e){return o.scale.linear().range([t-e,e])}(r,i.verticalPadding),domainScale:function(t,e,r){var n=h(r),i=r.ticktext;return r.tickvals?o.scale.ordinal().domain(r.tickvals.map(function(t,e){return function(r,n){if(e){var i=e[n];return null===i||void 0===i?t(r):i}return t(r)}}(o.format(r.tickformat),i))).range(r.tickvals.map(function(t){return(t-n[0])/(n[1]-n[0])}).map(function(r){return t-e+r*(e-(t-e))})):o.scale.linear().domain(n).range([t-e,e])}(r,i.verticalPadding,e),ordinalScale:function(t){var e=h(t);return t.tickvals&&o.scale.ordinal().domain(t.tickvals).range(t.tickvals.map(function(t){return(t-e[0])/(e[1]-e[0])}))}(e),domainToUnitScale:l,filter:e.constraintrange?e.constraintrange.map(l):[0,1],parent:d,model:t}}),d}function g(t){t.classed(i.cn.axisExtentText,!0).attr("text-anchor","middle").style("cursor","default").style("user-select","none")}e.exports=function(t,e,r,f,h,p){var y=!1,b=!0;var x=f.filter(function(t){return u(t).trace.visible}).map(m.bind(0,h)).map(v);r.each(function(t,e){return a.extendFlat(t,x[e])});var _=r.selectAll(".gl-canvas").each(function(t){t.viewModel=x[0],t.model=t.viewModel?t.viewModel.model:null}),w={renderers:[],dimensions:[]},M=null;_.filter(function(t){return t.pick}).style("pointer-events","auto").on("mousemove",function(t){if(b&&t.lineLayer&&p&&p.hover){var e=o.event,r=this.width,n=this.height,i=o.mouse(this),a=i[0],s=i[1];if(a<0||s<0||a>=r||s>=n)return;var l=t.lineLayer.readPixel(a,n-1-s),c=0!==l[3],u=c?l[2]+256*(l[1]+256*l[0]):null,f={x:a,y:s,clientX:e.clientX,clientY:e.clientY,dataIndex:t.model.key,curveNumber:u};u!==M&&(c?p.hover(f):p.unhover&&p.unhover(f),M=u)}}),_.style("opacity",function(t){return t.pick?.01:1}),e.style("background","rgba(255, 255, 255, 0)");var k=e.selectAll("."+i.cn.parcoords).data(x,l);k.exit().remove(),k.enter().append("g").classed(i.cn.parcoords,!0).attr("overflow","visible").style("box-sizing","content-box").style("position","absolute").style("left",0).style("overflow","visible").style("shape-rendering","crispEdges").style("pointer-events","none").call(function(t){var e=t.selectAll("defs").data(c,l);e.enter().append("defs");var r=e.selectAll("#"+i.id.filterBarPattern).data(c,l);r.enter().append("pattern").attr("id",i.id.filterBarPattern).attr("patternUnits","userSpaceOnUse"),r.attr("x",-i.bar.width).attr("width",i.bar.capturewidth).attr("height",function(t){return t.model.height});var n=r.selectAll("rect").data(c,l);n.enter().append("rect").attr("shape-rendering","crispEdges"),n.attr("height",function(t){return t.model.height}).attr("width",i.bar.width).attr("x",i.bar.width/2).attr("fill",i.bar.fillcolor).attr("fill-opacity",i.bar.fillopacity).attr("stroke",i.bar.strokecolor).attr("stroke-opacity",i.bar.strokeopacity).attr("stroke-width",i.bar.strokewidth)}),k.attr("width",function(t){return t.model.width+t.model.pad.l+t.model.pad.r}).attr("height",function(t){return t.model.height+t.model.pad.t+t.model.pad.b}).attr("transform",function(t){return"translate("+t.model.translateX+","+t.model.translateY+")"});var A=k.selectAll("."+i.cn.parcoordsControlView).data(c,l);A.enter().append("g").classed(i.cn.parcoordsControlView,!0).style("box-sizing","content-box"),A.attr("transform",function(t){return"translate("+t.model.pad.l+","+t.model.pad.t+")"});var T=A.selectAll("."+i.cn.yAxis).data(function(t){return t.dimensions},l);function E(t){return t.dimensions.some(function(t){return 0!==t.filter[0]||1!==t.filter[1]})}function S(t,e){return(i.scatter?function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=i,o=0;o<i;o++)for(var s=0;s<i;s++){var l=r[s+o*i]||(r[s+o*i]={}),c=n[s],u=n[s+1];l.dim1=n[o+1],l.dim2=u,l.canvasX=c.canvasX,l.panelSizeX=u.canvasX-c.canvasX,l.panelSizeY=e.model.canvasHeight/a,l.y=o*l.panelSizeY,l.canvasY=e.model.canvasHeight-l.y-l.panelSizeY}}:function(t,e){for(var r=e.panels||(e.panels=[]),n=t.each(function(t){return t})[e.key].map(function(t){return t.__data__}),i=n.length-1,a=0;a<1;a++)for(var o=0;o<i;o++){var s=r[o+a*i]||(r[o+a*i]={}),l=n[o],c=n[o+1];s.dim1=l,s.dim2=c,s.canvasX=l.canvasX,s.panelSizeX=c.canvasX-l.canvasX,s.panelSizeY=e.model.canvasHeight/1,s.y=a*s.panelSizeY,s.canvasY=e.model.canvasHeight-s.y-s.panelSizeY}})(t,e)}T.enter().append("g").classed(i.cn.yAxis,!0).each(function(t){w.dimensions.push(t)}),A.each(function(t){S(T,t)}),_.filter(function(t){return!!t.viewModel}).each(function(t){t.lineLayer=n(this,t,i.scatter),t.viewModel[t.key]=t.lineLayer,w.renderers.push(function(){t.lineLayer.render(t.viewModel.panels,!0)}),t.lineLayer.render(t.viewModel.panels,!t.context)}),T.attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),T.call(o.behavior.drag().origin(function(t){return t}).on("drag",function(t){var e=t.parent;b=!1,y||(t.x=Math.max(-i.overdrag,Math.min(t.model.width+i.overdrag,o.event.x)),t.canvasX=t.x*t.model.canvasPixelRatio,T.sort(function(t,e){return t.x-e.x}).each(function(e,r){e.xIndex=r,e.x=t===e?e.x:e.xScale(e.xIndex),e.canvasX=e.x*e.model.canvasPixelRatio}),S(T,e),T.filter(function(e){return 0!==Math.abs(t.xIndex-e.xIndex)}).attr("transform",function(t){return"translate("+t.xScale(t.xIndex)+", 0)"}),o.select(this).attr("transform","translate("+t.x+", 0)"),T.each(function(r,n,i){i===t.parent.key&&(e.dimensions[n]=r)}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer.render&&e.focusLayer.render(e.panels))}).on("dragend",function(t){var e=t.parent;y?"ending"===y&&(y=!1):(t.x=t.xScale(t.xIndex),t.canvasX=t.x*t.model.canvasPixelRatio,S(T,e),o.select(this).attr("transform",function(t){return"translate("+t.x+", 0)"}),e.contextLayer&&e.contextLayer.render(e.panels,!1,!E(e)),e.focusLayer&&e.focusLayer.render(e.panels),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,p&&p.axesMoved&&p.axesMoved(e.key,e.dimensions.map(function(t){return t.crossfilterDimensionIndex})))})),T.exit().remove();var L=T.selectAll("."+i.cn.axisOverlays).data(c,l);L.enter().append("g").classed(i.cn.axisOverlays,!0),L.selectAll("."+i.cn.axis).remove();var C=L.selectAll("."+i.cn.axis).data(c,l);C.enter().append("g").classed(i.cn.axis,!0),C.each(function(t){var e=t.model.height/t.model.tickDistance,r=t.domainScale,n=r.domain();o.select(this).call(o.svg.axis().orient("left").tickSize(4).outerTickSize(2).ticks(e,t.tickFormat).tickValues(t.ordinal?n:null).tickFormat(t.ordinal?function(t){return t}:null).scale(r)),s.font(C.selectAll("text"),t.model.tickFont)}),C.selectAll(".domain, .tick>line").attr("fill","none").attr("stroke","black").attr("stroke-opacity",.25).attr("stroke-width","1px"),C.selectAll("text").style("text-shadow","1px 1px 1px #fff, -1px -1px 1px #fff, 1px -1px 1px #fff, -1px 1px 1px #fff").style("cursor","default").style("user-select","none");var P=L.selectAll("."+i.cn.axisHeading).data(c,l);P.enter().append("g").classed(i.cn.axisHeading,!0);var z=P.selectAll("."+i.cn.axisTitle).data(c,l);z.enter().append("text").classed(i.cn.axisTitle,!0).attr("text-anchor","middle").style("cursor","ew-resize").style("user-select","none").style("pointer-events","auto"),z.attr("transform","translate(0,"+-i.axisTitleOffset+")").text(function(t){return t.label}).each(function(t){s.font(z,t.model.labelFont)});var O=L.selectAll("."+i.cn.axisExtent).data(c,l);O.enter().append("g").classed(i.cn.axisExtent,!0);var D=O.selectAll("."+i.cn.axisExtentTop).data(c,l);D.enter().append("g").classed(i.cn.axisExtentTop,!0),D.attr("transform","translate(0,"+-i.axisExtentOffset+")");var I=D.selectAll("."+i.cn.axisExtentTopText).data(c,l);function R(t){return t.ordinal?function(){return""}:o.format(t.tickFormat)}I.enter().append("text").classed(i.cn.axisExtentTopText,!0).call(g),I.text(function(t){return R(t)(t.domainScale.domain().slice(-1)[0])}).each(function(t){s.font(I,t.model.rangeFont)});var N=O.selectAll("."+i.cn.axisExtentBottom).data(c,l);N.enter().append("g").classed(i.cn.axisExtentBottom,!0),N.attr("transform",function(t){return"translate(0,"+(t.model.height+i.axisExtentOffset)+")"});var F=N.selectAll("."+i.cn.axisExtentBottomText).data(c,l);F.enter().append("text").classed(i.cn.axisExtentBottomText,!0).attr("dy","0.75em").call(g),F.text(function(t){return R(t)(t.domainScale.domain()[0])}).each(function(t){s.font(F,t.model.rangeFont)});var j=L.selectAll("."+i.cn.axisBrush).data(c,l),B=j.enter().append("g").classed(i.cn.axisBrush,!0);j.each(function(t){t.brush||(t.brush=o.svg.brush().y(t.unitScale).on("brushstart",q).on("brush",H).on("brushend",G),0===t.filter[0]&&1===t.filter[1]||t.brush.extent(t.filter),o.select(this).call(t.brush))}),B.selectAll("rect").attr("x",-i.bar.capturewidth/2).attr("width",i.bar.capturewidth),B.selectAll("rect.extent").attr("fill","url(#"+i.id.filterBarPattern+")").style("cursor","ns-resize").filter(function(t){return 0===t.filter[0]&&1===t.filter[1]}).attr("y",-100),B.selectAll(".resize rect").attr("height",i.bar.handleheight).attr("opacity",0).style("visibility","visible"),B.selectAll(".resize.n rect").style("cursor","n-resize").attr("y",i.bar.handleoverlap-i.bar.handleheight),B.selectAll(".resize.s rect").style("cursor","s-resize").attr("y",i.bar.handleoverlap);var U=!1,V=!1;function q(){U=!0,y=!0}function H(t){b=!1;var e=t.parent,r=t.brush.extent(),n=e.dimensions,i=n[t.xIndex].filter,a=U&&r[0]===r[1];a&&(t.brush.clear(),o.select(this).select("rect.extent").attr("y",-100));var s=a?[0,1]:r.slice();if(s[0]!==i[0]||s[1]!==i[1]){n[t.xIndex].filter=s,e.focusLayer&&e.focusLayer.render(e.panels,!0);var l=E(e);!V&&l?(e.contextLayer&&e.contextLayer.render(e.panels,!0),V=!0):V&&!l&&(e.contextLayer&&e.contextLayer.render(e.panels,!0,!0),V=!1)}U=!1}function G(t){var e=t.parent,r=t.brush.extent(),n=r[0]===r[1],i=e.dimensions[t.xIndex].filter;if(!n&&t.ordinal&&(i[0]=d(t.ordinalScale,i[0]),i[1]=d(t.ordinalScale,i[1]),i[0]===i[1]&&(i[0]=Math.max(0,i[0]-.05),i[1]=Math.min(1,i[1]+.05)),o.select(this).transition().duration(150).call(t.brush.extent(i)),e.focusLayer.render(e.panels,!0)),e.pickLayer&&e.pickLayer.render(e.panels,!0),b=!0,y="ending",p&&p.filterChanged){var a=t.domainToUnitScale.invert,s=i.map(a);p.filterChanged(e.key,t.visibleIndex,s)}}return w}},{"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1017,"./lines":1020,d3:128}],1022:[function(t,e,r){(function(r){"use strict";var n=t("./parcoords"),i=t("regl");e.exports=function(t,e){var a=t._fullLayout,o=a._toppaper,s=a._paperdiv,l=a._glcontainer;a._glcanvas.each(function(e){e.regl||(e.regl=i({canvas:this,attributes:{antialias:!e.pick,preserveDrawingBuffer:!0},pixelRatio:t._context.plotGlPixelRatio||r.devicePixelRatio}))});var c={},u={},f=a._size;e.forEach(function(e,r){c[r]=t.data[r].dimensions,u[r]=t.data[r].dimensions.slice()});n(s,o,l,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{filterChanged:function(e,r,n){var i=u[e][r],a=i.constraintrange;a&&2===a.length||(a=i.constraintrange=[]),a[0]=n[0],a[1]=n[1],t.emit("plotly_restyle")},hover:function(e){t.emit("plotly_hover",e)},unhover:function(e){t.emit("plotly_unhover",e)},axesMoved:function(e,r){function n(t){return!("visible"in t)||t.visible}function i(t,e,r){var n=e.indexOf(r),i=t.indexOf(n);return-1===i&&(i+=e.length),i}var a=function(t){return function(e,n){return i(r,t,e)-i(r,t,n)}}(u[e].filter(n));c[e].sort(a),u[e].filter(function(t){return!n(t)}).sort(function(t){return u[e].indexOf(t)}).forEach(function(t){c[e].splice(c[e].indexOf(t),1),c[e].splice(u[e].indexOf(t),0,t)}),t.emit("plotly_restyle")}})}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof 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n=t("../../components/color/attributes"),i=t("../../plots/font_attributes"),a=t("../../plots/attributes"),o=t("../../plots/domain_attributes"),s=t("../../lib/extend").extendFlat,l=i({editType:"calc",colorEditType:"style"});e.exports={labels:{valType:"data_array",editType:"calc"},label0:{valType:"number",dflt:0,editType:"calc"},dlabel:{valType:"number",dflt:1,editType:"calc"},values:{valType:"data_array",editType:"calc"},marker:{colors:{valType:"data_array",editType:"calc"},line:{color:{valType:"color",dflt:n.defaultLine,arrayOk:!0,editType:"style"},width:{valType:"number",min:0,dflt:0,arrayOk:!0,editType:"style"},editType:"calc"},editType:"calc"},text:{valType:"data_array",editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},scalegroup:{valType:"string",dflt:"",editType:"calc"},textinfo:{valType:"flaglist",flags:["label","text","value","percent"],extras:["none"],editType:"calc"},hoverinfo:s({},a.hoverinfo,{flags:["label","text","value","percent","name"]}),textposition:{valType:"enumerated",values:["inside","outside","auto","none"],dflt:"auto",arrayOk:!0,editType:"calc"},textfont:s({},l,{}),insidetextfont:s({},l,{}),outsidetextfont:s({},l,{}),domain:o({name:"pie",trace:!0,editType:"calc"}),hole:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},sort:{valType:"boolean",dflt:!0,editType:"calc"},direction:{valType:"enumerated",values:["clockwise","counterclockwise"],dflt:"counterclockwise",editType:"calc"},rotation:{valType:"number",min:-360,max:360,dflt:0,editType:"calc"},pull:{valType:"number",min:0,max:1,dflt:0,arrayOk:!0,editType:"calc"}}},{"../../components/color/attributes":597,"../../lib/extend":713,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1024:[function(t,e,r){"use 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r,n,u,f,h,d=e.values,p=Array.isArray(d)&&d.length,m=e.labels,v=e.marker.colors||[],g=[],y=t._fullLayout,b=y.colorway,x=y._piecolormap,_={},w=0,M=y.hiddenlabels||[];if(y._piecolorway||b===o.defaults||(y._piecolorway=c(b)),e.dlabel)for(m=new Array(d.length),r=0;r<d.length;r++)m[r]=String(e.label0+r*e.dlabel);function k(t,e){return!!t&&(!!(t=a(t)).isValid()&&(t=o.addOpacity(t,t.getAlpha()),x[e]||(x[e]=t),t))}var A=(p?d:m).length;for(r=0;r<A;r++){if(p){if(n=d[r],!i(n))continue;if((n=+n)<0)continue}else n=1;void 0!==(u=m[r])&&""!==u||(u=r);var T=_[u=String(u)];void 0===T?(_[u]=g.length,(f=-1!==M.indexOf(u))||(w+=n),g.push({v:n,label:u,color:k(v[r]),i:r,pts:[r],hidden:f})):((h=g[T]).v+=n,h.pts.push(r),h.hidden||(w+=n),!1===h.color&&v[r]&&(h.color=k(v[r],u)))}for(e.sort&&g.sort(function(t,e){return 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void(e.visible=!1);o("label0"),o("dlabel")}o("marker.line.width")&&o("marker.line.color"),o("marker.colors"),o("scalegroup");var u=o("text"),f=o("textinfo",Array.isArray(u)?"text+percent":"percent");if(o("hovertext"),f&&"none"!==f){var h=o("textposition"),d=Array.isArray(h)||"auto"===h,p=d||"inside"===h,m=d||"outside"===h;if(p||m){var v=s(o,"textfont",a.font);p&&s(o,"insidetextfont",v),m&&s(o,"outsidetextfont",v)}}o("domain.x"),o("domain.y"),o("hole"),o("sort"),o("direction"),o("rotation"),o("pull")}},{"../../lib":724,"./attributes":1023}],1027:[function(t,e,r){"use strict";var n=t("../../components/fx/helpers").appendArrayMultiPointValues;e.exports=function(t,e){var r={curveNumber:e.index,pointNumbers:t.pts,data:e._input,fullData:e,label:t.label,color:t.color,value:t.v,v:t.v};return 1===t.pts.length&&(r.pointNumber=r.i=t.pts[0]),n(r,e,t.pts),r}},{"../../components/fx/helpers":637}],1028:[function(t,e,r){"use strict";var n=t("../../lib");r.formatPiePercent=function(t,e){var r=(100*t).toPrecision(3);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)+"%"},r.formatPieValue=function(t,e){var r=t.toPrecision(10);return-1!==r.lastIndexOf(".")&&(r=r.replace(/[.]?0+$/,"")),n.numSeparate(r,e)},r.getFirstFilled=function(t,e){if(Array.isArray(t))for(var r=0;r<e.length;r++){var n=t[e[r]];if(n||0===n)return n}},r.castOption=function(t,e){return Array.isArray(t)?r.getFirstFilled(t,e):t||void 0}},{"../../lib":724}],1029:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.supplyLayoutDefaults=t("./layout_defaults"),n.layoutAttributes=t("./layout_attributes"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.styleOne=t("./style_one"),n.moduleType="trace",n.name="pie",n.basePlotModule=t("./base_plot"),n.categories=["pie","showLegend"],n.meta={},e.exports=n},{"./attributes":1023,"./base_plot":1024,"./calc":1025,"./defaults":1026,"./layout_attributes":1030,"./layout_defaults":1031,"./plot":1032,"./style":1033,"./style_one":1034}],1030:[function(t,e,r){"use strict";e.exports={hiddenlabels:{valType:"data_array",editType:"calc"}}},{}],1031:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./layout_attributes");e.exports=function(t,e){var r,a;r="hiddenlabels",n.coerce(t,e,i,r,a)}},{"../../lib":724,"./layout_attributes":1030}],1032:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/fx"),a=t("../../components/color"),o=t("../../components/drawing"),s=t("../../lib/svg_text_utils"),l=t("./helpers"),c=t("./event_data");function u(t,e){if(t.v===e.vTotal&&!e.trace.hole)return 1;var r=Math.PI*Math.min(t.v/e.vTotal,.5);return Math.min(1/(1+1/Math.sin(r)),(1-e.trace.hole)/2)}function f(t,e){var r=e.pxmid[0],n=e.pxmid[1],i=t.width/2,a=t.height/2;return r<0&&(i*=-1),n<0&&(a*=-1),{scale:1,rCenter:1,rotate:0,x:i+Math.abs(a)*(i>0?1:-1)/2,y:a/(1+r*r/(n*n)),outside:!0}}e.exports=function(t,e){var r=t._fullLayout;!function(t,e){var r,n,i,a,o,s,l,c,u,f=[];for(i=0;i<t.length;i++){if(o=t[i][0],s=o.trace,r=e.w*(s.domain.x[1]-s.domain.x[0]),n=e.h*(s.domain.y[1]-s.domain.y[0]),l=s.pull,Array.isArray(l))for(l=0,a=0;a<s.pull.length;a++)s.pull[a]>l&&(l=s.pull[a]);o.r=Math.min(r,n)/(2+2*l),o.cx=e.l+e.w*(s.domain.x[1]+s.domain.x[0])/2,o.cy=e.t+e.h*(2-s.domain.y[1]-s.domain.y[0])/2,s.scalegroup&&-1===f.indexOf(s.scalegroup)&&f.push(s.scalegroup)}for(a=0;a<f.length;a++){for(u=1/0,c=f[a],i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(u=Math.min(u,o.r*o.r/o.vTotal));for(i=0;i<t.length;i++)(o=t[i][0]).trace.scalegroup===c&&(o.r=Math.sqrt(u*o.vTotal))}}(e,r._size);var h=r._pielayer.selectAll("g.trace").data(e);h.enter().append("g").attr({"stroke-linejoin":"round",class:"trace"}),h.exit().remove(),h.order(),h.each(function(e){var h=n.select(this),d=e[0],p=d.trace;!function(t){var 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o=t._fullLayout,s=t._fullData[p.index];if(!t._dragging&&!1!==o.hovermode){var f=s.hoverinfo;if(Array.isArray(f)&&(f=i.castHoverinfo({hoverinfo:[l.castOption(f,e.pts)],_module:p._module},o,0)),"all"===f&&(f="label+text+value+percent+name"),"none"!==f&&"skip"!==f&&f){var m=u(e,d),v=a+e.pxmid[0]*(1-m),g=h+e.pxmid[1]*(1-m),y=r.separators,_=[];if(-1!==f.indexOf("label")&&_.push(e.label),-1!==f.indexOf("text")){var w=l.castOption(s.hovertext||s.text,e.pts);w&&_.push(w)}-1!==f.indexOf("value")&&_.push(l.formatPieValue(e.v,y)),-1!==f.indexOf("percent")&&_.push(l.formatPiePercent(e.v/d.vTotal,y));var M=p.hoverlabel,k=M.font;i.loneHover({x0:v-m*d.r,x1:v+m*d.r,y:g,text:_.join("<br>"),name:-1!==f.indexOf("name")?s.name:void 0,idealAlign:e.pxmid[0]<0?"left":"right",color:l.castOption(M.bgcolor,e.pts)||e.color,borderColor:l.castOption(M.bordercolor,e.pts),fontFamily:l.castOption(k.family,e.pts),fontSize:l.castOption(k.size,e.pts),fontColor:l.castOption(k.color,e.pts)},{container:o._hoverlayer.node(),outerContainer:o._paper.node(),gd:t}),b=!0}t.emit("plotly_hover",{points:[c(e,s)],event:n.event}),x=!0}}).on("mouseout",function(r){var a=t._fullLayout,o=t._fullData[p.index];x&&(r.originalEvent=n.event,t.emit("plotly_unhover",{points:[c(e,o)],event:n.event}),x=!1),b&&(i.loneUnhover(a._hoverlayer.node()),b=!1)}).on("click",function(){var r=t._fullLayout,a=t._fullData[p.index];t._dragging||!1===r.hovermode||(t._hoverdata=[c(e,a)],i.click(t,n.event))}),p.pull){var _=+l.castOption(p.pull,e.pts)||0;_>0&&(a+=_*e.pxmid[0],h+=_*e.pxmid[1])}e.cxFinal=a,e.cyFinal=h;var w=p.hole;if(e.v===d.vTotal){var M="M"+(a+e.px0[0])+","+(h+e.px0[1])+S(e.px0,e.pxmid,!0,1)+S(e.pxmid,e.px0,!0,1)+"Z";w?y.attr("d","M"+(a+w*e.px0[0])+","+(h+w*e.px0[1])+S(e.px0,e.pxmid,!1,w)+S(e.pxmid,e.px0,!1,w)+"Z"+M):y.attr("d",M)}else{var k=S(e.px0,e.px1,!0,1);if(w){var A=1-w;y.attr("d","M"+(a+w*e.px1[0])+","+(h+w*e.px1[1])+S(e.px1,e.px0,!1,w)+"l"+A*e.px0[0]+","+A*e.px0[1]+k+"Z")}else y.attr("d","M"+a+","+h+"l"+e.px0[0]+","+e.px0[1]+k+"Z")}var T=l.castOption(p.textposition,e.pts),E=g.selectAll("g.slicetext").data(e.text&&"none"!==T?[0]:[]);E.enter().append("g").classed("slicetext",!0),E.exit().remove(),E.each(function(){var r=n.select(this).selectAll("text").data([0]);r.enter().append("text").attr("data-notex",1),r.exit().remove(),r.text(e.text).attr({class:"slicetext",transform:"","text-anchor":"middle"}).call(o.font,"outside"===T?p.outsidetextfont:p.insidetextfont).call(s.convertToTspans,t);var i,l=o.bBox(r.node());"outside"===T?i=f(l,e):(i=function(t,e,r){var n=Math.sqrt(t.width*t.width+t.height*t.height),i=t.width/t.height,a=Math.PI*Math.min(e.v/r.vTotal,.5),o=1-r.trace.hole,s=u(e,r),l={scale:s*r.r*2/n,rCenter:1-s,rotate:0};if(l.scale>=1)return l;var c=i+1/(2*Math.tan(a)),f=r.r*Math.min(1/(Math.sqrt(c*c+.5)+c),o/(Math.sqrt(i*i+o/2)+i)),h={scale:2*f/t.height,rCenter:Math.cos(f/r.r)-f*i/r.r,rotate:(180/Math.PI*e.midangle+720)%180-90},d=1/i,p=d+1/(2*Math.tan(a)),m=r.r*Math.min(1/(Math.sqrt(p*p+.5)+p),o/(Math.sqrt(d*d+o/2)+d)),v={scale:2*m/t.width,rCenter:Math.cos(m/r.r)-m/i/r.r,rotate:(180/Math.PI*e.midangle+810)%180-90},g=v.scale>h.scale?v:h;return l.scale<1&&g.scale>l.scale?g:l}(l,e,d),"auto"===T&&i.scale<1&&(r.call(o.font,p.outsidetextfont),p.outsidetextfont.family===p.insidetextfont.family&&p.outsidetextfont.size===p.insidetextfont.size||(l=o.bBox(r.node())),i=f(l,e)));var c=a+e.pxmid[0]*i.rCenter+(i.x||0),m=h+e.pxmid[1]*i.rCenter+(i.y||0);i.outside&&(e.yLabelMin=m-l.height/2,e.yLabelMid=m,e.yLabelMax=m+l.height/2,e.labelExtraX=0,e.labelExtraY=0,v=!0),r.attr("transform","translate("+c+","+m+")"+(i.scale<1?"scale("+i.scale+")":"")+(i.rotate?"rotate("+i.rotate+")":"")+"translate("+-(l.left+l.right)/2+","+-(l.top+l.bottom)/2+")")})}function S(t,r,n,i){return"a"+i*d.r+","+i*d.r+" 0 "+e.largeArc+(n?" 1 ":" 0 ")+i*(r[0]-t[0])+","+i*(r[1]-t[1])}}),v&&function(t,e){var r,n,i,a,o,s,c,u,f,h,d,p,m;function v(t,e){return t.pxmid[1]-e.pxmid[1]}function g(t,e){return e.pxmid[1]-t.pxmid[1]}function y(t,r){r||(r={});var i,u,f,d,p,m,v=r.labelExtraY+(n?r.yLabelMax:r.yLabelMin),g=n?t.yLabelMin:t.yLabelMax,y=n?t.yLabelMax:t.yLabelMin,b=t.cyFinal+o(t.px0[1],t.px1[1]),x=v-g;if(x*c>0&&(t.labelExtraY=x),Array.isArray(e.pull))for(u=0;u<h.length;u++)(f=h[u])===t||(l.castOption(e.pull,t.pts)||0)>=(l.castOption(e.pull,f.pts)||0)||((t.pxmid[1]-f.pxmid[1])*c>0?(d=f.cyFinal+o(f.px0[1],f.px1[1]),(x=d-g-t.labelExtraY)*c>0&&(t.labelExtraY+=x)):(y+t.labelExtraY-b)*c>0&&(i=3*s*Math.abs(u-h.indexOf(t)),p=f.cxFinal+a(f.px0[0],f.px1[0]),(m=p+i-(t.cxFinal+t.pxmid[0])-t.labelExtraX)*s>0&&(t.labelExtraX+=m)))}for(n=0;n<2;n++)for(i=n?v:g,o=n?Math.max:Math.min,c=n?1:-1,r=0;r<2;r++){for(a=r?Math.max:Math.min,s=r?1:-1,(u=t[n][r]).sort(i),f=t[1-n][r],h=f.concat(u),p=[],d=0;d<u.length;d++)void 0!==u[d].yLabelMid&&p.push(u[d]);for(m=!1,d=0;n&&d<f.length;d++)if(void 0!==f[d].yLabelMid){m=f[d];break}for(d=0;d<p.length;d++){var b=d&&p[d-1];m&&!d&&(b=m),y(p[d],b)}}}(m,p),h.each(function(t){if(t.labelExtraX||t.labelExtraY){var e=n.select(this),r=e.select("g.slicetext text");r.attr("transform","translate("+t.labelExtraX+","+t.labelExtraY+")"+r.attr("transform"));var i=t.cxFinal+t.pxmid[0],o="M"+i+","+(t.cyFinal+t.pxmid[1]),s=(t.yLabelMax-t.yLabelMin)*(t.pxmid[0]<0?-1:1)/4;if(t.labelExtraX){var l=t.labelExtraX*t.pxmid[1]/t.pxmid[0],c=t.yLabelMid+t.labelExtraY-(t.cyFinal+t.pxmid[1]);Math.abs(l)>Math.abs(c)?o+="l"+c*t.pxmid[0]/t.pxmid[1]+","+c+"H"+(i+t.labelExtraX+s):o+="l"+t.labelExtraX+","+l+"v"+(c-l)+"h"+s}else o+="V"+(t.yLabelMid+t.labelExtraY)+"h"+s;e.append("path").classed("textline",!0).call(a.stroke,p.outsidetextfont.color).attr({"stroke-width":Math.min(2,p.outsidetextfont.size/8),d:o,fill:"none"})}})})}),setTimeout(function(){h.selectAll("tspan").each(function(){var t=n.select(this);t.attr("dy")&&t.attr("dy",t.attr("dy"))})},0)}},{"../../components/color":598,"../../components/drawing":623,"../../components/fx":640,"../../lib/svg_text_utils":747,"./event_data":1027,"./helpers":1028,d3:128}],1033:[function(t,e,r){"use strict";var n=t("d3"),i=t("./style_one");e.exports=function(t){t._fullLayout._pielayer.selectAll(".trace").each(function(t){var e=t[0].trace,r=n.select(this);r.style({opacity:e.opacity}),r.selectAll("path.surface").each(function(t){n.select(this).call(i,t,e)})})}},{"./style_one":1034,d3:128}],1034:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./helpers").castOption;e.exports=function(t,e,r){var a=r.marker.line,o=i(a.color,e.pts)||n.defaultLine,s=i(a.width,e.pts)||0;t.style({"stroke-width":s}).call(n.fill,e.color).call(n.stroke,o)}},{"../../components/color":598,"./helpers":1028}],1035:[function(t,e,r){"use strict";var n=t("../scatter/attributes");e.exports={x:n.x,y:n.y,xy:{valType:"data_array",editType:"calc"},indices:{valType:"data_array",editType:"calc"},xbounds:{valType:"data_array",editType:"calc"},ybounds:{valType:"data_array",editType:"calc"},text:n.text,marker:{color:{valType:"color",arrayOk:!1,editType:"calc"},opacity:{valType:"number",min:0,max:1,dflt:1,arrayOk:!1,editType:"calc"},blend:{valType:"boolean",dflt:null,editType:"calc"},sizemin:{valType:"number",min:.1,max:2,dflt:.5,editType:"calc"},sizemax:{valType:"number",min:.1,dflt:20,editType:"calc"},border:{color:{valType:"color",arrayOk:!1,editType:"calc"},arearatio:{valType:"number",min:0,max:1,dflt:0,editType:"calc"},editType:"calc"},editType:"calc"}}},{"../scatter/attributes":1048}],1036:[function(t,e,r){"use strict";var n=t("gl-pointcloud2d"),i=t("../../lib/str2rgbarray"),a=t("../scatter/get_trace_color"),o=["xaxis","yaxis"];function s(t,e){this.scene=t,this.uid=e,this.type="pointcloud",this.pickXData=[],this.pickYData=[],this.xData=[],this.yData=[],this.textLabels=[],this.color="rgb(0, 0, 0)",this.name="",this.hoverinfo="all",this.idToIndex=new Int32Array(0),this.bounds=[0,0,0,0],this.pointcloudOptions={positions:new Float32Array(0),idToIndex:this.idToIndex,sizemin:.5,sizemax:12,color:[0,0,0,1],areaRatio:1,borderColor:[0,0,0,1]},this.pointcloud=n(t.glplot,this.pointcloudOptions),this.pointcloud._trace=this}var l=s.prototype;l.handlePick=function(t){var e=this.idToIndex[t.pointId];return{trace:this,dataCoord:t.dataCoord,traceCoord:this.pickXYData?[this.pickXYData[2*e],this.pickXYData[2*e+1]]:[this.pickXData[e],this.pickYData[e]],textLabel:Array.isArray(this.textLabels)?this.textLabels[e]:this.textLabels,color:this.color,name:this.name,pointIndex:e,hoverinfo:this.hoverinfo}},l.update=function(t){this.index=t.index,this.textLabels=t.text,this.name=t.name,this.hoverinfo=t.hoverinfo,this.bounds=[1/0,1/0,-1/0,-1/0],this.updateFast(t),this.color=a(t,{})},l.updateFast=function(t){var e,r,n,a,o,s,l=this.xData=this.pickXData=t.x,c=this.yData=this.pickYData=t.y,u=this.pickXYData=t.xy,f=t.xbounds&&t.ybounds,h=t.indices,d=this.bounds;if(u){if(n=u,e=u.length>>>1,f)d[0]=t.xbounds[0],d[2]=t.xbounds[1],d[1]=t.ybounds[0],d[3]=t.ybounds[1];else for(s=0;s<e;s++)a=n[2*s],o=n[2*s+1],a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);if(h)r=h;else for(r=new Int32Array(e),s=0;s<e;s++)r[s]=s}else for(e=l.length,n=new Float32Array(2*e),r=new Int32Array(e),s=0;s<e;s++)a=l[s],o=c[s],r[s]=s,n[2*s]=a,n[2*s+1]=o,a<d[0]&&(d[0]=a),a>d[2]&&(d[2]=a),o<d[1]&&(d[1]=o),o>d[3]&&(d[3]=o);this.idToIndex=r,this.pointcloudOptions.idToIndex=r,this.pointcloudOptions.positions=n;var p=i(t.marker.color),m=i(t.marker.border.color),v=t.opacity*t.marker.opacity;p[3]*=v,this.pointcloudOptions.color=p;var g=t.marker.blend;if(null===g){g=l.length<100||c.length<100}this.pointcloudOptions.blend=g,m[3]*=v,this.pointcloudOptions.borderColor=m;var y=t.marker.sizemin,b=Math.max(t.marker.sizemax,t.marker.sizemin);this.pointcloudOptions.sizeMin=y,this.pointcloudOptions.sizeMax=b,this.pointcloudOptions.areaRatio=t.marker.border.arearatio,this.pointcloud.update(this.pointcloudOptions),this.expandAxesFast(d,b/2)},l.expandAxesFast=function(t,e){for(var r,n,i,a=e||.5,s=0;s<2;s++)(n=(r=this.scene[o[s]])._min)||(n=[]),n.push({val:t[s],pad:a}),(i=r._max)||(i=[]),i.push({val:t[s+2],pad:a})},l.dispose=function(){this.pointcloud.dispose()},e.exports=function(t,e){var r=new s(t,e.uid);return r.update(e),r}},{"../../lib/str2rgbarray":746,"../scatter/get_trace_color":1058,"gl-pointcloud2d":212}],1037:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes");e.exports=function(t,e,r){function a(r,a){return n.coerce(t,e,i,r,a)}a("x"),a("y"),a("xbounds"),a("ybounds"),t.xy&&t.xy instanceof Float32Array&&(e.xy=t.xy),t.indices&&t.indices instanceof Int32Array&&(e.indices=t.indices),a("text"),a("marker.color",r),a("marker.opacity"),a("marker.blend"),a("marker.sizemin"),a("marker.sizemax"),a("marker.border.color",r),a("marker.border.arearatio")}},{"../../lib":724,"./attributes":1035}],1038:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("../scatter3d/calc"),n.plot=t("./convert"),n.moduleType="trace",n.name="pointcloud",n.basePlotModule=t("../../plots/gl2d"),n.categories=["gl","gl2d","showLegend"],n.meta={},e.exports=n},{"../../plots/gl2d":810,"../scatter3d/calc":1074,"./attributes":1035,"./convert":1036,"./defaults":1037}],1039:[function(t,e,r){"use strict";var n=t("../../plots/font_attributes"),i=t("../../plots/attributes"),a=t("../../components/color/attributes"),o=t("../../components/fx/attributes"),s=t("../../plots/domain_attributes"),l=t("../../lib/extend").extendFlat,c=t("../../plot_api/edit_types").overrideAll;e.exports=c({hoverinfo:l({},i.hoverinfo,{flags:["label","text","value","percent","name"]}),hoverlabel:o.hoverlabel,domain:s({name:"sankey",trace:!0}),orientation:{valType:"enumerated",values:["v","h"],dflt:"h"},valueformat:{valType:"string",dflt:".3s"},valuesuffix:{valType:"string",dflt:""},arrangement:{valType:"enumerated",values:["snap","perpendicular","freeform","fixed"],dflt:"snap"},textfont:n({}),node:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:.5,arrayOk:!0}},pad:{valType:"number",arrayOk:!1,min:0,dflt:20},thickness:{valType:"number",arrayOk:!1,min:1,dflt:20}},link:{label:{valType:"data_array",dflt:[]},color:{valType:"color",arrayOk:!0},line:{color:{valType:"color",dflt:a.defaultLine,arrayOk:!0},width:{valType:"number",min:0,dflt:0,arrayOk:!0}},source:{valType:"data_array",dflt:[]},target:{valType:"data_array",dflt:[]},value:{valType:"data_array",dflt:[]}}},"calc","nested")},{"../../components/color/attributes":597,"../../components/fx/attributes":632,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../../plots/domain_attributes":796,"../../plots/font_attributes":797}],1040:[function(t,e,r){"use strict";var n=t("../../plot_api/edit_types").overrideAll,i=t("../../plots/get_data").getModuleCalcData,a=t("./plot"),o=t("../../components/fx/layout_attributes");r.name="sankey",r.baseLayoutAttrOverrides=n({hoverlabel:o.hoverlabel},"plot","nested"),r.plot=function(t){var e=i(t.calcdata,"sankey");a(t,e)},r.clean=function(t,e,r,n){var i=n._has&&n._has("sankey"),a=e._has&&e._has("sankey");i&&!a&&n._paperdiv.selectAll(".sankey").remove()}},{"../../components/fx/layout_attributes":641,"../../plot_api/edit_types":754,"../../plots/get_data":807,"./plot":1045}],1041:[function(t,e,r){"use strict";var n=t("strongly-connected-components"),i=t("../../lib"),a=t("../../lib/gup").wrap;e.exports=function(t,e){return function(t,e,r){for(var i=t.map(function(){return[]}),a=0;a<Math.min(e.length,r.length);a++){if(e[a]===r[a])return!0;i[e[a]].push(r[a])}return n(i).components.some(function(t){return t.length>1})}(e.node.label,e.link.source,e.link.target)&&(i.error("Circularity is present in the Sankey data. Removing all nodes and links."),e.link.label=[],e.link.source=[],e.link.target=[],e.link.value=[],e.link.color=[],e.node.label=[],e.node.color=[]),a({link:e.link,node:e.node})}},{"../../lib":724,"../../lib/gup":721,"strongly-connected-components":517}],1042:[function(t,e,r){"use strict";e.exports={nodeTextOffsetHorizontal:4,nodeTextOffsetVertical:3,nodePadAcross:10,sankeyIterations:50,forceIterations:5,forceTicksPerFrame:10,duration:500,ease:"cubic-in-out",cn:{sankey:"sankey",sankeyLinks:"sankey-links",sankeyLink:"sankey-link",sankeyNodeSet:"sankey-node-set",sankeyNode:"sankey-node",nodeRect:"node-rect",nodeCapture:"node-capture",nodeCentered:"node-entered",nodeLabelGuide:"node-label-guide",nodeLabel:"node-label",nodeLabelTextPath:"node-label-text-path"}}},{}],1043:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("../../components/color"),o=t("tinycolor2");e.exports=function(t,e,r,s){function l(r,a){return n.coerce(t,e,i,r,a)}l("node.label"),l("node.pad"),l("node.thickness"),l("node.line.color"),l("node.line.width");var c=s.colorway;l("node.color",e.node.label.map(function(t,e){return a.addOpacity(function(t){return c[t%c.length]}(e),.8)})),l("link.label"),l("link.source"),l("link.target"),l("link.value"),l("link.line.color"),l("link.line.width"),l("link.color",e.link.value.map(function(){return o(s.paper_bgcolor).getLuminance()<.333?"rgba(255, 255, 255, 0.6)":"rgba(0, 0, 0, 0.2)"})),l("domain.x"),l("domain.y"),l("orientation"),l("valueformat"),l("valuesuffix"),l("arrangement"),n.coerceFont(l,"textfont",n.extendFlat({},s.font));e.node.label.some(function(t,r){return-1===e.link.source.indexOf(r)&&-1===e.link.target.indexOf(r)})&&n.warn("Some of the nodes are neither sources nor targets, they will not be displayed.")}},{"../../components/color":598,"../../lib":724,"./attributes":1039,tinycolor2:526}],1044:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.calc=t("./calc"),n.plot=t("./plot"),n.moduleType="trace",n.name="sankey",n.basePlotModule=t("./base_plot"),n.categories=["noOpacity"],n.meta={},e.exports=n},{"./attributes":1039,"./base_plot":1040,"./calc":1041,"./defaults":1043,"./plot":1045}],1045:[function(t,e,r){"use strict";var n=t("d3"),i=t("./render"),a=t("../../components/fx"),o=t("../../components/color"),s=t("../../lib"),l=t("./constants").cn,c=s._;function u(t){return""!==t}function f(t,e){return t.filter(function(t){return t.key===e.traceId})}function h(t,e){n.select(t).select("path").style("fill-opacity",e),n.select(t).select("rect").style("fill-opacity",e)}function d(t){n.select(t).select("text.name").style("fill","black")}function p(t){return function(e){return-1!==t.node.sourceLinks.indexOf(e.link)||-1!==t.node.targetLinks.indexOf(e.link)}}function m(t){return function(e){return-1!==e.node.sourceLinks.indexOf(t.link)||-1!==e.node.targetLinks.indexOf(t.link)}}function v(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(y.bind(0,e,r,!1))}function g(t,e,r){e&&r&&f(r,e).selectAll("."+l.sankeyLink).filter(p(e)).call(b.bind(0,e,r,!1))}function y(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",.4),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",.4),r&&f(e,t).selectAll("."+l.sankeyNode).filter(m(t)).call(v)}function b(t,e,r,n){var i=n.datum().link.label;n.style("fill-opacity",function(t){return t.tinyColorAlpha}),i&&f(e,t).selectAll("."+l.sankeyLink).filter(function(t){return t.link.label===i}).style("fill-opacity",function(t){return t.tinyColorAlpha}),r&&f(e,t).selectAll(l.sankeyNode).filter(m(t)).call(g)}function x(t,e){var r=t.hoverlabel||{},n=s.nestedProperty(r,e).get();return!Array.isArray(n)&&n}e.exports=function(t,e){var r=t._fullLayout,s=r._paper,f=r._size,p=c(t,"source:")+" ",m=c(t,"target:")+" ",_=c(t,"incoming flow count:")+" ",w=c(t,"outgoing flow count:")+" ";i(s,e,{width:f.w,height:f.h,margin:{t:f.t,r:f.r,b:f.b,l:f.l}},{linkEvents:{hover:function(e,r,i){n.select(e).call(y.bind(0,r,i,!0)),t.emit("plotly_hover",{event:n.event,points:[r.link]})},follow:function(e,i){var s=i.link.trace,l=t._fullLayout._paperdiv.node().getBoundingClientRect(),c=e.getBoundingClientRect(),f=c.left+c.width/2,v=c.top+c.height/2,g=a.loneHover({x:f-l.left,y:v-l.top,name:n.format(i.valueFormat)(i.link.value)+i.valueSuffix,text:[i.link.label||"",p+i.link.source.label,m+i.link.target.label].filter(u).join("<br>"),color:x(s,"bgcolor")||o.addOpacity(i.tinyColorHue,1),borderColor:x(s,"bordercolor"),fontFamily:x(s,"font.family"),fontSize:x(s,"font.size"),fontColor:x(s,"font.color"),idealAlign:n.event.x<f?"right":"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.65),d(g)},unhover:function(e,i,o){n.select(e).call(b.bind(0,i,o,!0)),t.emit("plotly_unhover",{event:n.event,points:[i.link]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r){var i=r.link;i.originalEvent=n.event,t._hoverdata=[i],a.click(t,{target:!0})}},nodeEvents:{hover:function(e,r,i){n.select(e).call(v,r,i),t.emit("plotly_hover",{event:n.event,points:[r.node]})},follow:function(e,i){var o=i.node.trace,s=n.select(e).select("."+l.nodeRect),c=t._fullLayout._paperdiv.node().getBoundingClientRect(),f=s.node().getBoundingClientRect(),p=f.left-2-c.left,m=f.right+2-c.left,v=f.top+f.height/4-c.top,g=a.loneHover({x0:p,x1:m,y:v,name:n.format(i.valueFormat)(i.node.value)+i.valueSuffix,text:[i.node.label,_+i.node.targetLinks.length,w+i.node.sourceLinks.length].filter(u).join("<br>"),color:x(o,"bgcolor")||i.tinyColorHue,borderColor:x(o,"bordercolor"),fontFamily:x(o,"font.family"),fontSize:x(o,"font.size"),fontColor:x(o,"font.color"),idealAlign:"left"},{container:r._hoverlayer.node(),outerContainer:r._paper.node(),gd:t});h(g,.85),d(g)},unhover:function(e,i,o){n.select(e).call(g,i,o),t.emit("plotly_unhover",{event:n.event,points:[i.node]}),a.loneUnhover(r._hoverlayer.node())},select:function(e,r,i){var o=r.node;o.originalEvent=n.event,t._hoverdata=[o],n.select(e).call(g,r,i),a.click(t,{target:!0})}}})}},{"../../components/color":598,"../../components/fx":640,"../../lib":724,"./constants":1042,"./render":1046,d3:128}],1046:[function(t,e,r){"use strict";var n=t("./constants"),i=t("d3"),a=t("tinycolor2"),o=t("../../components/color"),s=t("../../components/drawing"),l=t("@plotly/d3-sankey").sankey,c=t("d3-force"),u=t("../../lib"),f=t("../../lib/gup").keyFun,h=t("../../lib/gup").repeat,d=t("../../lib/gup").unwrap;function p(t){t.lastDraggedX=t.x,t.lastDraggedY=t.y}function m(t){return function(e){return e.node.originalX===t.node.originalX}}function v(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y+t[e].dy/2}function g(t){t.attr("transform",function(t){return"translate("+t.node.x.toFixed(3)+", "+(t.node.y-t.node.dy/2).toFixed(3)+")"})}function y(t){var e=t.sankey.nodes();!function(t){for(var e=0;e<t.length;e++)t[e].y=t[e].y-t[e].dy/2}(e);var r=t.sankey.link()(t.link);return v(e),r}function b(t){t.call(g)}function x(t,e){t.call(b),e.attr("d",y)}function _(t){t.attr("width",function(t){return t.visibleWidth}).attr("height",function(t){return t.visibleHeight})}function w(t){return t.link.dy>1||t.linkLineWidth>0}function M(t){return"translate("+t.translateX+","+t.translateY+")"+(t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)")}function k(t){return"translate("+(t.horizontal?0:t.labelY)+" "+(t.horizontal?t.labelY:0)+")"}function A(t){return i.svg.line()([[t.horizontal?t.left?-t.sizeAcross:t.visibleWidth+n.nodeTextOffsetHorizontal:n.nodeTextOffsetHorizontal,0],[t.horizontal?t.left?-n.nodeTextOffsetHorizontal:t.sizeAcross:t.visibleHeight-n.nodeTextOffsetHorizontal,0]])}function T(t){return t.horizontal?"matrix(1 0 0 1 0 0)":"matrix(0 1 1 0 0 0)"}function E(t){return t.horizontal?"scale(1 1)":"scale(-1 1)"}function S(t){return t.darkBackground&&!t.horizontal?"rgb(255,255,255)":"rgb(0,0,0)"}function L(t){return t.horizontal&&t.left?"100%":"0%"}function C(t,e,r){t.on(".basic",null).on("mouseover.basic",function(t){t.interactionState.dragInProgress||(r.hover(this,t,e),t.interactionState.hovered=[this,t])}).on("mousemove.basic",function(t){t.interactionState.dragInProgress||(r.follow(this,t),t.interactionState.hovered=[this,t])}).on("mouseout.basic",function(t){t.interactionState.dragInProgress||(r.unhover(this,t,e),t.interactionState.hovered=!1)}).on("click.basic",function(t){t.interactionState.hovered&&(r.unhover(this,t,e),t.interactionState.hovered=!1),t.interactionState.dragInProgress||r.select(this,t,e)})}function P(t,e,r){var a=i.behavior.drag().origin(function(t){return t.node}).on("dragstart",function(i){if("fixed"!==i.arrangement&&(u.raiseToTop(this),i.interactionState.dragInProgress=i.node,p(i.node),i.interactionState.hovered&&(r.nodeEvents.unhover.apply(0,i.interactionState.hovered),i.interactionState.hovered=!1),"snap"===i.arrangement)){var a=i.traceId+"|"+Math.floor(i.node.originalX);i.forceLayouts[a]?i.forceLayouts[a].alpha(1):function(t,e,r){var i=r.sankey.nodes().filter(function(t){return t.originalX===r.node.originalX});r.forceLayouts[e]=c.forceSimulation(i).alphaDecay(0).force("collide",c.forceCollide().radius(function(t){return t.dy/2+r.nodePad/2}).strength(1).iterations(n.forceIterations)).force("constrain",function(t,e,r,i){return function(){for(var t=0,a=0;a<r.length;a++){var o=r[a];o===i.interactionState.dragInProgress?(o.x=o.lastDraggedX,o.y=o.lastDraggedY):(o.vx=(o.originalX-o.x)/n.forceTicksPerFrame,o.y=Math.min(i.size-o.dy/2,Math.max(o.dy/2,o.y))),t=Math.max(t,Math.abs(o.vx),Math.abs(o.vy))}!i.interactionState.dragInProgress&&t<.1&&i.forceLayouts[e].alpha()>0&&i.forceLayouts[e].alpha(0)}}(0,e,i,r)).stop()}(0,a,i),function(t,e,r,i){window.requestAnimationFrame(function a(){for(var o=0;o<n.forceTicksPerFrame;o++)r.forceLayouts[i].tick();r.sankey.relayout(),x(t.filter(m(r)),e),r.forceLayouts[i].alpha()>0&&window.requestAnimationFrame(a)})}(t,e,i,a)}}).on("drag",function(r){if("fixed"!==r.arrangement){var n=i.event.x,a=i.event.y;"snap"===r.arrangement?(r.node.x=n,r.node.y=a):("freeform"===r.arrangement&&(r.node.x=n),r.node.y=Math.max(r.node.dy/2,Math.min(r.size-r.node.dy/2,a))),p(r.node),"snap"!==r.arrangement&&(r.sankey.relayout(),x(t.filter(m(r)),e))}}).on("dragend",function(t){t.interactionState.dragInProgress=!1});t.on(".drag",null).call(a)}e.exports=function(t,e,r,i){var c=t.selectAll("."+n.cn.sankey).data(e.filter(function(t){return d(t).trace.visible}).map(function(t,e,r){for(var i,a=d(e).trace,o=a.domain,s=a.node,c=a.link,f=a.arrangement,h="h"===a.orientation,p=a.node.pad,m=a.node.thickness,g=a.node.line.color,y=a.node.line.width,b=a.link.line.color,x=a.link.line.width,_=a.valueformat,w=a.valuesuffix,M=a.textfont,k=t.width*(o.x[1]-o.x[0]),A=t.height*(o.y[1]-o.y[0]),T=s.label.map(function(t,e){return{pointNumber:e,label:t,color:u.isArray(s.color)?s.color[e]:s.color}}),E=c.value.map(function(t,e){return{pointNumber:e,label:c.label[e],color:u.isArray(c.color)?c.color[e]:c.color,source:c.source[e],target:c.target[e],value:t}}),S=l().size(h?[k,A]:[A,k]).nodeWidth(m).nodePadding(p).nodes(T).links(E).layout(n.sankeyIterations),L=S.nodes(),C=0;C<L.length;C++)(i=L[C]).width=k,i.height=A;return v(T),{key:r,trace:a,guid:Math.floor(1e12*(1+Math.random())),horizontal:h,width:k,height:A,nodePad:p,nodeLineColor:g,nodeLineWidth:y,linkLineColor:b,linkLineWidth:x,valueFormat:_,valueSuffix:w,textFont:M,translateX:o.x[0]*k+t.margin.l,translateY:t.height-o.y[1]*t.height+t.margin.t,dragParallel:h?A:k,dragPerpendicular:h?k:A,nodes:T,links:E,arrangement:f,sankey:S,forceLayouts:{},interactionState:{dragInProgress:!1,hovered:!1}}}.bind(null,r)),f);c.exit().remove(),c.enter().append("g").classed(n.cn.sankey,!0).style("box-sizing","content-box").style("position","absolute").style("left",0).style("shape-rendering","geometricPrecision").style("pointer-events","auto").style("box-sizing","content-box").attr("transform",M),c.transition().ease(n.ease).duration(n.duration).attr("transform",M);var p=c.selectAll("."+n.cn.sankeyLinks).data(h,f);p.enter().append("g").classed(n.cn.sankeyLinks,!0).style("fill","none");var m=p.selectAll("."+n.cn.sankeyLink).data(function(t){return t.sankey.links().filter(function(t){return t.value}).map(function(t,e,r){var n=a(r.color),i=r.source.label+"|"+r.target.label,s=t[i];t[i]=(s||0)+1;var l=i+"__"+t[i];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:l,traceId:e.key,link:r,tinyColorHue:o.tinyRGB(n),tinyColorAlpha:n.getAlpha(),linkLineColor:e.linkLineColor,linkLineWidth:e.linkLineWidth,valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,interactionState:e.interactionState}}.bind(null,{},t))},f);m.enter().append("path").classed(n.cn.sankeyLink,!0).attr("d",y).call(C,c,i.linkEvents),m.style("stroke",function(t){return w(t)?o.tinyRGB(a(t.linkLineColor)):t.tinyColorHue}).style("stroke-opacity",function(t){return w(t)?o.opacity(t.linkLineColor):t.tinyColorAlpha}).style("stroke-width",function(t){return w(t)?t.linkLineWidth:1}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),m.transition().ease(n.ease).duration(n.duration).attr("d",y),m.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var b=c.selectAll("."+n.cn.sankeyNodeSet).data(h,f);b.enter().append("g").classed(n.cn.sankeyNodeSet,!0),b.style("cursor",function(t){switch(t.arrangement){case"fixed":return"default";case"perpendicular":return"ns-resize";default:return"move"}});var x=b.selectAll("."+n.cn.sankeyNode).data(function(t){var e=t.sankey.nodes();return function(t){var e,r=[];for(e=0;e<t.length;e++)t[e].originalX=t[e].x,t[e].originalY=t[e].y,-1===r.indexOf(t[e].x)&&r.push(t[e].x);for(r.sort(function(t,e){return t-e}),e=0;e<t.length;e++)t[e].originalLayerIndex=r.indexOf(t[e].originalX),t[e].originalLayer=t[e].originalLayerIndex/(r.length-1)}(e),e.filter(function(t){return t.value}).map(function(t,e,r){var i=a(r.color),s=n.nodePadAcross,l=e.nodePad/2,c=r.dx,u=Math.max(.5,r.dy),f=r.label,h=t[f];t[f]=(h||0)+1;var d=f+"__"+t[f];return r.trace=e.trace,r.curveNumber=e.trace.index,{key:d,traceId:e.key,node:r,nodePad:e.nodePad,nodeLineColor:e.nodeLineColor,nodeLineWidth:e.nodeLineWidth,textFont:e.textFont,size:e.horizontal?e.height:e.width,visibleWidth:Math.ceil(c),visibleHeight:u,zoneX:-s,zoneY:-l,zoneWidth:c+2*s,zoneHeight:u+2*l,labelY:e.horizontal?r.dy/2+1:r.dx/2+1,left:1===r.originalLayer,sizeAcross:e.width,forceLayouts:e.forceLayouts,horizontal:e.horizontal,darkBackground:i.getBrightness()<=128,tinyColorHue:o.tinyRGB(i),tinyColorAlpha:i.getAlpha(),valueFormat:e.valueFormat,valueSuffix:e.valueSuffix,sankey:e.sankey,arrangement:e.arrangement,uniqueNodeLabelPathId:[e.guid,e.key,d].join(" "),interactionState:e.interactionState}}.bind(null,{},t))},f);x.enter().append("g").classed(n.cn.sankeyNode,!0).call(g).call(C,c,i.nodeEvents),x.call(P,m,i),x.transition().ease(n.ease).duration(n.duration).call(g),x.exit().transition().ease(n.ease).duration(n.duration).style("opacity",0).remove();var z=x.selectAll("."+n.cn.nodeRect).data(h);z.enter().append("rect").classed(n.cn.nodeRect,!0).call(_),z.style("stroke-width",function(t){return t.nodeLineWidth}).style("stroke",function(t){return o.tinyRGB(a(t.nodeLineColor))}).style("stroke-opacity",function(t){return o.opacity(t.nodeLineColor)}).style("fill",function(t){return t.tinyColorHue}).style("fill-opacity",function(t){return t.tinyColorAlpha}),z.transition().ease(n.ease).duration(n.duration).call(_);var O=x.selectAll("."+n.cn.nodeCapture).data(h);O.enter().append("rect").classed(n.cn.nodeCapture,!0).style("fill-opacity",0),O.attr("x",function(t){return t.zoneX}).attr("y",function(t){return t.zoneY}).attr("width",function(t){return t.zoneWidth}).attr("height",function(t){return t.zoneHeight});var D=x.selectAll("."+n.cn.nodeCentered).data(h);D.enter().append("g").classed(n.cn.nodeCentered,!0).attr("transform",k),D.transition().ease(n.ease).duration(n.duration).attr("transform",k);var I=D.selectAll("."+n.cn.nodeLabelGuide).data(h);I.enter().append("path").classed(n.cn.nodeLabelGuide,!0).attr("id",function(t){return t.uniqueNodeLabelPathId}).attr("d",A).attr("transform",T),I.transition().ease(n.ease).duration(n.duration).attr("d",A).attr("transform",T);var R=D.selectAll("."+n.cn.nodeLabel).data(h);R.enter().append("text").classed(n.cn.nodeLabel,!0).attr("transform",E).style("user-select","none").style("cursor","default").style("fill","black"),R.style("text-shadow",function(t){return t.horizontal?"-1px 1px 1px #fff, 1px 1px 1px #fff, 1px -1px 1px #fff, -1px -1px 1px #fff":"none"}).each(function(t){s.font(R,t.textFont)}),R.transition().ease(n.ease).duration(n.duration).attr("transform",E);var N=R.selectAll("."+n.cn.nodeLabelTextPath).data(h);N.enter().append("textPath").classed(n.cn.nodeLabelTextPath,!0).attr("alignment-baseline","middle").attr("xlink:href",function(t){return"#"+t.uniqueNodeLabelPathId}).attr("startOffset",L).style("fill",S),N.text(function(t){return t.horizontal||t.node.dy>5?t.node.label:""}).attr("text-anchor",function(t){return t.horizontal&&t.left?"end":"start"}),N.transition().ease(n.ease).duration(n.duration).attr("startOffset",L).style("fill",S)}},{"../../components/color":598,"../../components/drawing":623,"../../lib":724,"../../lib/gup":721,"./constants":1042,"@plotly/d3-sankey":41,d3:128,"d3-force":124,tinycolor2:526}],1047:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){for(var r=0;r<t.length;r++)t[r].i=r;n.mergeArray(e.text,t,"tx"),n.mergeArray(e.hovertext,t,"htx"),n.mergeArray(e.customdata,t,"data"),n.mergeArray(e.textposition,t,"tp"),e.textfont&&(n.mergeArray(e.textfont.size,t,"ts"),n.mergeArray(e.textfont.color,t,"tc"),n.mergeArray(e.textfont.family,t,"tf"));var i=e.marker;if(i){n.mergeArray(i.size,t,"ms"),n.mergeArray(i.opacity,t,"mo"),n.mergeArray(i.symbol,t,"mx"),n.mergeArray(i.color,t,"mc");var a=i.line;i.line&&(n.mergeArray(a.color,t,"mlc"),n.mergeArray(a.width,t,"mlw"));var o=i.gradient;o&&"none"!==o.type&&(n.mergeArray(o.type,t,"mgt"),n.mergeArray(o.color,t,"mgc"))}}},{"../../lib":724}],1048:[function(t,e,r){"use strict";var n=t("../../components/colorscale/color_attributes"),i=t("../../components/errorbars/attributes"),a=t("../../components/colorbar/attributes"),o=t("../../plots/font_attributes"),s=t("../../components/drawing/attributes").dash,l=t("../../components/drawing"),c=(t("./constants"),t("../../lib/extend").extendFlat);e.exports={x:{valType:"data_array",editType:"calc+clearAxisTypes"},x0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dx:{valType:"number",dflt:1,editType:"calc"},y:{valType:"data_array",editType:"calc+clearAxisTypes"},y0:{valType:"any",dflt:0,editType:"calc+clearAxisTypes"},dy:{valType:"number",dflt:1,editType:"calc"},text:{valType:"string",dflt:"",arrayOk:!0,editType:"calc"},hovertext:{valType:"string",dflt:"",arrayOk:!0,editType:"style"},mode:{valType:"flaglist",flags:["lines","markers","text"],extras:["none"],editType:"calc"},hoveron:{valType:"flaglist",flags:["points","fills"],editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},shape:{valType:"enumerated",values:["linear","spline","hv","vh","hvh","vhv"],dflt:"linear",editType:"plot"},smoothing:{valType:"number",min:0,max:1.3,dflt:1,editType:"plot"},dash:c({},s,{editType:"style"}),simplify:{valType:"boolean",dflt:!0,editType:"plot"},editType:"plot"},connectgaps:{valType:"boolean",dflt:!1,editType:"calc"},cliponaxis:{valType:"boolean",dflt:!0,editType:"plot"},fill:{valType:"enumerated",values:["none","tozeroy","tozerox","tonexty","tonextx","toself","tonext"],dflt:"none",editType:"calc"},fillcolor:{valType:"color",editType:"style"},marker:c({symbol:{valType:"enumerated",values:l.symbolList,dflt:"circle",arrayOk:!0,editType:"style"},opacity:{valType:"number",min:0,max:1,arrayOk:!0,editType:"style"},size:{valType:"number",min:0,dflt:6,arrayOk:!0,editType:"calcIfAutorange"},maxdisplayed:{valType:"number",min:0,dflt:0,editType:"plot"},sizeref:{valType:"number",dflt:1,editType:"calc"},sizemin:{valType:"number",min:0,dflt:0,editType:"calc"},sizemode:{valType:"enumerated",values:["diameter","area"],dflt:"diameter",editType:"calc"},showscale:{valType:"boolean",dflt:!1,editType:"calc"},colorbar:a,line:c({width:{valType:"number",min:0,arrayOk:!0,editType:"style"},editType:"calc"},n("marker.line")),gradient:{type:{valType:"enumerated",values:["radial","horizontal","vertical","none"],arrayOk:!0,dflt:"none",editType:"calc"},color:{valType:"color",arrayOk:!0,editType:"calc"},editType:"calc"},editType:"calc"},n("marker")),selected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},unselected:{marker:{opacity:{valType:"number",min:0,max:1,editType:"style"},color:{valType:"color",editType:"style"},size:{valType:"number",min:0,editType:"style"},editType:"style"},textfont:{color:{valType:"color",editType:"style"},editType:"style"},editType:"style"},textposition:{valType:"enumerated",values:["top left","top center","top right","middle left","middle center","middle right","bottom left","bottom center","bottom right"],dflt:"middle center",arrayOk:!0,editType:"calc"},textfont:o({editType:"calc",colorEditType:"style",arrayOk:!0}),r:{valType:"data_array",editType:"calc"},t:{valType:"data_array",editType:"calc"},error_y:i,error_x:i}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../components/drawing":623,"../../components/drawing/attributes":622,"../../components/errorbars/attributes":625,"../../lib/extend":713,"../../plots/font_attributes":797,"./constants":1054}],1049:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("./subtypes"),s=t("./colorscale_calc"),l=t("./arrays_to_calcdata"),c=t("./calc_selection");function u(t,e){if(o.hasMarkers(t)){var r,n=t.marker,a=1.6*(t.marker.sizeref||1);if(r="area"===t.marker.sizemode?function(t){return Math.max(Math.sqrt((t||0)/a),3)}:function(t){return Math.max((t||0)/a,3)},Array.isArray(n.size)){var s={type:"linear"};i.setConvert(s);for(var l=s.makeCalcdata(t.marker,"size"),c=new Array(e),u=0;u<e;u++)c[u]=r(l[u]);return c}return r(n.size)}}e.exports={calc:function(t,e){var r=i.getFromId(t,e.xaxis||"x"),f=i.getFromId(t,e.yaxis||"y"),h=r.makeCalcdata(e,"x"),d=f.makeCalcdata(e,"y"),p=e._length;r._minDtick=0,f._minDtick=0;var m={padded:!0},v={padded:!0},g=u(e,p);g&&(m.ppad=v.ppad=g),!("tozerox"===e.fill||"tonextx"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?e.error_y.visible||-1===["tonexty","tozeroy"].indexOf(e.fill)&&(o.hasMarkers(e)||o.hasText(e))||(m.padded=!1,m.ppad=0):m.tozero=!0,!("tozeroy"===e.fill||"tonexty"===e.fill&&t.firstscatter)||h[0]===h[p-1]&&d[0]===d[p-1]?-1!==["tonextx","tozerox"].indexOf(e.fill)&&(v.padded=!1):v.tozero=!0,i.expand(r,h,m),i.expand(f,d,v);for(var y=new Array(p),b=0;b<p;b++)y[b]=n(h[b])&&n(d[b])?{x:h[b],y:d[b]}:{x:a,y:a},e.ids&&(y[b].id=String(e.ids[b]));return l(y,e),s(e),c(y,e),t.firstscatter=!1,y},calcMarkerSize:u}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"./arrays_to_calcdata":1047,"./calc_selection":1050,"./colorscale_calc":1053,"./subtypes":1070,"fast-isnumeric":140}],1050:[function(t,e,r){"use strict";var n=t("../../lib");e.exports=function(t,e){Array.isArray(e.selectedpoints)&&n.tagSelected(t,e)}},{"../../lib":724}],1051:[function(t,e,r){"use strict";e.exports=function(t){for(var e=0;e<t.length;e++){var r=t[e];if("scatter"===r.type){var n=r.fill;if("none"!==n&&"toself"!==n&&(r.opacity=void 0,"tonexty"===n||"tonextx"===n))for(var i=e-1;i>=0;i--){var a=t[i];if("scatter"===a.type&&a.xaxis===r.xaxis&&a.yaxis===r.yaxis){a.opacity=void 0;break}}}}}},{}],1052:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../lib"),a=t("../../plots/plots"),o=t("../../components/colorscale"),s=t("../../components/colorbar/draw");e.exports=function(t,e){var r=e[0].trace,l=r.marker,c="cb"+r.uid;if(t._fullLayout._infolayer.selectAll("."+c).remove(),void 0!==l&&l.showscale){var u=l.color,f=l.cmin,h=l.cmax;n(f)||(f=i.aggNums(Math.min,null,u)),n(h)||(h=i.aggNums(Math.max,null,u));var d=e[0].t.cb=s(t,c),p=o.makeColorScaleFunc(o.extractScale(l.colorscale,f,h),{noNumericCheck:!0});d.fillcolor(p).filllevels({start:f,end:h,size:(h-f)/254}).options(l.colorbar)()}else a.autoMargin(t,c)}},{"../../components/colorbar/draw":602,"../../components/colorscale":613,"../../lib":724,"../../plots/plots":833,"fast-isnumeric":140}],1053:[function(t,e,r){"use strict";var n=t("../../components/colorscale/has_colorscale"),i=t("../../components/colorscale/calc"),a=t("./subtypes");e.exports=function(t){a.hasLines(t)&&n(t,"line")&&i(t,t.line.color,"line","c"),a.hasMarkers(t)&&(n(t,"marker")&&i(t,t.marker.color,"marker","c"),n(t,"marker.line")&&i(t,t.marker.line.color,"marker.line","c"))}},{"../../components/colorscale/calc":605,"../../components/colorscale/has_colorscale":612,"./subtypes":1070}],1054:[function(t,e,r){"use strict";e.exports={PTS_LINESONLY:20,minTolerance:.2,toleranceGrowth:10,maxScreensAway:20}},{}],1055:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("./attributes"),a=t("./constants"),o=t("./subtypes"),s=t("./xy_defaults"),l=t("./marker_defaults"),c=t("./line_defaults"),u=t("./line_shape_defaults"),f=t("./text_defaults"),h=t("./fillcolor_defaults"),d=t("../../components/errorbars/defaults");e.exports=function(t,e,r,p){function m(r,a){return n.coerce(t,e,i,r,a)}var v=s(t,e,p,m),g=v<a.PTS_LINESONLY?"lines+markers":"lines";if(v){m("text"),m("hovertext"),m("mode",g),o.hasLines(e)&&(c(t,e,r,p,m),u(t,e,m),m("connectgaps"),m("line.simplify")),o.hasMarkers(e)&&l(t,e,r,p,m,{gradient:!0}),o.hasText(e)&&f(t,e,p,m);var y=[];(o.hasMarkers(e)||o.hasText(e))&&(m("cliponaxis"),m("marker.maxdisplayed"),y.push("points")),m("fill"),"none"!==e.fill&&(h(t,e,r,m),o.hasLines(e)||u(t,e,m)),"tonext"!==e.fill&&"toself"!==e.fill||y.push("fills"),m("hoveron",y.join("+")||"points"),d(t,e,r,{axis:"y"}),d(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,m)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"./attributes":1048,"./constants":1054,"./fillcolor_defaults":1057,"./line_defaults":1061,"./line_shape_defaults":1063,"./marker_defaults":1066,"./subtypes":1070,"./text_defaults":1071,"./xy_defaults":1072}],1056:[function(t,e,r){"use strict";var n=t("../../lib");function i(t){return t||0===t}e.exports=function(t,e,r){var a=Array.isArray(r)?function(t){r.push(t)}:function(t){r.text=t},o=n.extractOption(t,e,"htx","hovertext");if(i(o))return a(o);var s=n.extractOption(t,e,"tx","text");return i(s)?a(s):void 0}},{"../../lib":724}],1057:[function(t,e,r){"use strict";var n=t("../../components/color");e.exports=function(t,e,r,i){var a=!1;if(e.marker){var o=e.marker.color,s=(e.marker.line||{}).color;o&&!Array.isArray(o)?a=o:s&&!Array.isArray(s)&&(a=s)}i("fillcolor",n.addOpacity((e.line||{}).color||a||r,.5))}},{"../../components/color":598}],1058:[function(t,e,r){"use strict";var n=t("../../components/color"),i=t("./subtypes");e.exports=function(t,e){var r,a;if("lines"===t.mode)return(r=t.line.color)&&n.opacity(r)?r:t.fillcolor;if("none"===t.mode)return t.fill?t.fillcolor:"";var o=e.mcc||(t.marker||{}).color,s=e.mlcc||((t.marker||{}).line||{}).color;return(a=o&&n.opacity(o)?o:s&&n.opacity(s)&&(e.mlw||((t.marker||{}).line||{}).width)?s:"")?n.opacity(a)<.3?n.addOpacity(a,.3):a:(r=(t.line||{}).color)&&n.opacity(r)&&i.hasLines(t)&&t.line.width?r:t.fillcolor}},{"../../components/color":598,"./subtypes":1070}],1059:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../../components/fx"),a=t("../../components/errorbars"),o=t("./get_trace_color"),s=t("../../components/color"),l=t("./fill_hover_text"),c=i.constants.MAXDIST;e.exports=function(t,e,r,u){var f=t.cd,h=f[0].trace,d=t.xa,p=t.ya,m=d.c2p(e),v=p.c2p(r),g=[m,v],y=h.hoveron||"",b=-1!==h.mode.indexOf("markers")?3:.5;if(-1!==y.indexOf("points")){var x=i.getDistanceFunction(u,function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(d.c2p(t.x)-m);return n<e?r*n/e:n-e+r},function(t){var e=Math.max(3,t.mrc||0),r=1-1/e,n=Math.abs(p.c2p(t.y)-v);return n<e?r*n/e:n-e+r},function(t){var 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s.opacity(h.fillcolor)?V=h.fillcolor:s.opacity((h.line||{}).color)&&(V=h.line.color),n.extendFlat(t,{distance:c+10,x0:N,x1:F,y0:U,y1:U,color:V}),delete t.index,h.text&&!Array.isArray(h.text)?t.text=String(h.text):t.text=h.name,[t]}}}},{"../../components/color":598,"../../components/errorbars":629,"../../components/fx":640,"../../lib":724,"./fill_hover_text":1056,"./get_trace_color":1058}],1060:[function(t,e,r){"use strict";var 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r=[i(t.x,t.error_x,e[0]),i(t.y,t.error_y,e[1]),i(t.z,t.error_z,e[2])],n=function(t){for(var e=0;e<t.length;e++)if(t[e])return t[e].length;return 0}(r);if(0===n)return null;for(var a=new Array(n),o=0;o<n;o++){for(var s=[[0,0,0],[0,0,0]],l=0;l<3;l++)if(r[l])for(var c=0;c<2;c++)s[c][l]=r[l][o][c];a[o]=s}return a}},{"../../components/errorbars/compute_error":627}],1076:[function(t,e,r){"use strict";var n=t("gl-line3d"),i=t("gl-scatter3d"),a=t("gl-error3d"),o=t("gl-mesh3d"),s=t("delaunay-triangulate"),l=t("../../lib"),c=t("../../lib/str2rgbarray"),u=t("../../lib/gl_format_color"),f=t("../scatter/make_bubble_size_func"),h=t("../../constants/gl3d_dashes"),d=t("../../constants/gl3d_markers"),p=t("./calc_errors");function m(t,e){this.scene=t,this.uid=e,this.linePlot=null,this.scatterPlot=null,this.errorBars=null,this.textMarkers=null,this.delaunayMesh=null,this.color=null,this.mode="",this.dataPoints=[],this.axesBounds=[[-1/0,-1/0,-1/0],[1/0,1/0,1/0]],this.textLabels=null,this.data=null}var 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m=function(t,e,r){var n,i=(r+1)%3,a=(r+2)%3,o=[],l=[];for(n=0;n<t.length;++n){var c=t[n];!isNaN(c[i])&&isFinite(c[i])&&!isNaN(c[a])&&isFinite(c[a])&&(o.push([c[i],c[a]]),l.push(n))}var u=s(o);for(n=0;n<u.length;++n)for(var f=u[n],h=0;h<f.length;++h)f[h]=l[f[h]];return{positions:t,cells:u,meshColor:e}}(d.position,d.delaunayColor,d.delaunayAxis);m.opacity=t.opacity,this.delaunayMesh?this.delaunayMesh.update(m):(m.gl=u,this.delaunayMesh=o(m),this.delaunayMesh._trace=this,this.scene.glplot.add(this.delaunayMesh))}else 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n=t("../../registry"),i=t("../../lib"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/text_defaults"),c=t("../../components/errorbars/defaults"),u=t("./attributes");e.exports=function(t,e,r,f){function h(r,n){return i.coerce(t,e,u,r,n)}if(function(t,e,r,i){var a=0,o=r("x"),s=r("y"),l=r("z");n.getComponentMethod("calendars","handleTraceDefaults")(t,e,["x","y","z"],i),o&&s&&l&&(a=Math.min(o.length,s.length,l.length),e._xlength=e._ylength=e._zlength=a);return a}(t,e,h,f)){h("text"),h("hovertext"),h("mode"),a.hasLines(e)&&(h("connectgaps"),s(t,e,r,f,h)),a.hasMarkers(e)&&o(t,e,r,f,h,{noSelect:!0}),a.hasText(e)&&l(t,e,f,h,{noSelect:!0});var d=(e.line||{}).color,p=(e.marker||{}).color;h("surfaceaxis")>=0&&h("surfacecolor",d||p);for(var m=["x","y","z"],v=0;v<3;++v){var g="projection."+m[v];h(g+".show")&&(h(g+".opacity"),h(g+".scale"))}c(t,e,r,{axis:"z"}),c(t,e,r,{axis:"y",inherit:"z"}),c(t,e,r,{axis:"x",inherit:"z"})}else 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n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/colorbar/attributes"),s=t("../../lib/extend").extendFlat,l=n.marker,c=n.line,u=l.line;e.exports={carpet:{valType:"string",editType:"calc"},a:{valType:"data_array",editType:"calc"},b:{valType:"data_array",editType:"calc"},mode:s({},n.mode,{dflt:"markers"}),text:s({},n.text,{}),line:{color:c.color,width:c.width,dash:c.dash,shape:s({},c.shape,{values:["linear","spline"]}),smoothing:c.smoothing,editType:"calc"},connectgaps:n.connectgaps,fill:s({},n.fill,{values:["none","toself","tonext"]}),fillcolor:n.fillcolor,marker:s({symbol:l.symbol,opacity:l.opacity,maxdisplayed:l.maxdisplayed,size:l.size,sizeref:l.sizeref,sizemin:l.sizemin,sizemode:l.sizemode,line:s({width:u.width,editType:"calc"},a("marker".line)),gradient:l.gradient,editType:"calc"},a("marker"),{showscale:l.showscale,colorbar:o}),textfont:n.textfont,textposition:n.textposition,selected:n.selected,unselected:n.unselected,hoverinfo:s({},i.hoverinfo,{flags:["a","b","text","name"]}),hoveron:n.hoveron}},{"../../components/colorbar/attributes":599,"../../components/colorscale/color_attributes":606,"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1080:[function(t,e,r){"use 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n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/marker_defaults"),s=t("../scatter/line_defaults"),l=t("../scatter/line_shape_defaults"),c=t("../scatter/text_defaults"),u=t("../scatter/fillcolor_defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}d("carpet"),e.xaxis="x",e.yaxis="y";var p,m=d("a"),v=d("b");if(p=Math.min(m.length,v.length)){m&&p<m.length&&(e.a=m.slice(0,p)),v&&p<v.length&&(e.b=v.slice(0,p)),d("text"),d("mode",p<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(s(t,e,r,h,d),l(t,e,d),d("connectgaps")),a.hasMarkers(e)&&o(t,e,r,h,d,{gradient:!0}),a.hasText(e)&&c(t,e,h,d);var g=[];(a.hasMarkers(e)||a.hasText(e))&&(d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(u(t,e,r,d),a.hasLines(e)||l(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1079}],1082:[function(t,e,r){"use strict";e.exports=function(t,e,r,n,i){var a=n[i];return t.a=a.a,t.b=a.b,t}},{}],1083:[function(t,e,r){"use strict";var n=t("../scatter/hover");e.exports=function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var o=a[0];if(void 0===o.index){var s=1-o.y0/t.ya._length,l=t.xa._length,c=l*s/2,u=l-c;return o.x0=Math.max(Math.min(o.x0,u),c),o.x1=Math.max(Math.min(o.x1,u),c),a}var f=o.cd[o.index];o.a=f.a,o.b=f.b,o.xLabelVal=void 0,o.yLabelVal=void 0;var h=o.trace,d=h._carpet,p=(f.hi||h.hoverinfo).split("+"),m=[];-1!==p.indexOf("all")&&(p=["a","b"]),-1!==p.indexOf("a")&&w(d.aaxis,f.a),-1!==p.indexOf("b")&&w(d.baxis,f.b);var v=d.ab2ij([f.a,f.b]),g=Math.floor(v[0]),y=v[0]-g,b=Math.floor(v[1]),x=v[1]-b,_=d.evalxy([],g,b,y,x);return m.push("y: "+_[1].toFixed(3)),o.extraText=m.join("<br>"),a}function w(t,e){var r;r=t.labelprefix&&t.labelprefix.length>0?t.labelprefix.replace(/ = $/,""):t._hovertitle,m.push(r+": "+e.toFixed(3)+t.labelsuffix)}}},{"../scatter/hover":1059}],1084:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("../scatter/style").style,n.hoverPoints=t("./hover"),n.selectPoints=t("../scatter/select"),n.eventData=t("./event_data"),n.moduleType="trace",n.name="scattercarpet",n.basePlotModule=t("../../plots/cartesian"),n.categories=["carpet","symbols","markerColorscale","showLegend","carpetDependent"],n.meta={},e.exports=n},{"../../plots/cartesian":781,"../scatter/colorbar":1052,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1079,"./calc":1080,"./defaults":1081,"./event_data":1082,"./hover":1083,"./plot":1085}],1085:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../plots/cartesian/axes"),a=t("../../components/drawing");e.exports=function(t,e,r){var o,s,l,c=r[0][0].carpet,u={xaxis:i.getFromId(t,c.xaxis||"x"),yaxis:i.getFromId(t,c.yaxis||"y"),plot:e.plot};for(n(t,u,r),o=0;o<r.length;o++)s=r[o][0].trace,l=u.plot.selectAll("g.trace"+s.uid+" .js-line"),a.setClipUrl(l,c._clipPathId)}},{"../../components/drawing":623,"../../plots/cartesian/axes":770,"../scatter/plot":1067}],1086:[function(t,e,r){"use strict";var n=t("../scatter/attributes"),i=t("../../plots/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../components/drawing/attributes").dash,s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=n.marker,u=n.line,f=c.line;e.exports=l({lon:{valType:"data_array"},lat:{valType:"data_array"},locations:{valType:"data_array"},locationmode:{valType:"enumerated",values:["ISO-3","USA-states","country 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n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../scatter/colorscale_calc"),o=t("../scatter/arrays_to_calcdata"),s=t("../scatter/calc_selection"),l=t("../../lib")._;e.exports=function(t,e){for(var r=Array.isArray(e.locations),c=r?e.locations.length:e._length,u=new Array(c),f=0;f<c;f++){var h=u[f]={};if(r){var d=e.locations[f];h.loc="string"==typeof d?d:null}else{var p=e.lon[f],m=e.lat[f];n(p)&&n(m)?h.lonlat=[+p,+m]:h.lonlat=[i,i]}}return o(u,e),a(e),s(u,e),c&&(u[0].t={labels:{lat:l(t,"lat:")+" ",lon:l(t,"lon:")+" "}}),u}},{"../../constants/numerical":702,"../../lib":724,"../scatter/arrays_to_calcdata":1047,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1088:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/text_defaults"),l=t("../scatter/fillcolor_defaults"),c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}!function(t,e,r){var n,i,a=0,o=r("locations");if(o)return r("locationmode"),a=o.length;return n=r("lon")||[],i=r("lat")||[],a=Math.min(n.length,i.length),e._length=a,a}(0,e,f)?e.visible=!1:(f("text"),f("hovertext"),f("mode"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps")),i.hasMarkers(e)&&a(t,e,r,u,f,{gradient:!0}),i.hasText(e)&&s(t,e,u,f),f("fill"),"none"!==e.fill&&l(t,e,r,f))}},{"../../lib":724,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1086}],1089:[function(t,e,r){"use strict";e.exports=function(t,e){return t.lon=e.lon,t.lat=e.lat,t.location=e.loc?e.loc:null,t}},{}],1090:[function(t,e,r){"use strict";var n=t("../../components/fx"),i=t("../../plots/cartesian/axes"),a=t("../../constants/numerical").BADNUM,o=t("../scatter/get_trace_color"),s=t("../scatter/fill_hover_text"),l=t("./attributes");e.exports=function(t,e,r){var c=t.cd,u=c[0].trace,f=t.xa,h=t.ya,d=t.subplot,p=d.projection.isLonLatOverEdges,m=d.project;if(n.getClosest(c,function(t){var n=t.lonlat;if(n[0]===a)return 1/0;if(p(n))return 1/0;var i=m(n),o=m([e,r]),s=Math.abs(i[0]-o[0]),l=Math.abs(i[1]-o[1]),c=Math.max(3,t.mrc||0);return Math.max(Math.sqrt(s*s+l*l)-c,1-3/c)},t),!1!==t.index){var v=c[t.index],g=v.lonlat,y=[f.c2p(g),h.c2p(g)],b=v.mrc||1;return t.x0=y[0]-b,t.x1=y[0]+b,t.y0=y[1]-b,t.y1=y[1]+b,t.loc=v.loc,t.lon=g[0],t.lat=g[1],t.color=o(u,v),t.extraText=function(t,e,r,n){var a=e.hi||t.hoverinfo,o="all"===a?l.hoverinfo.flags:a.split("+"),c=-1!==o.indexOf("location")&&Array.isArray(t.locations),u=-1!==o.indexOf("lon"),f=-1!==o.indexOf("lat"),h=-1!==o.indexOf("text"),d=[];function p(t){return i.tickText(r,r.c2l(t),"hover").text+"\xb0"}c?d.push(e.loc):u&&f?d.push("("+p(e.lonlat[0])+", "+p(e.lonlat[1])+")"):u?d.push(n.lon+p(e.lonlat[0])):f&&d.push(n.lat+p(e.lonlat[1]));h&&s(e,t,d);return d.join("<br>")}(u,v,d.mockAxis,c[0].t.labels),[t]}}},{"../../components/fx":640,"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/fill_hover_text":1056,"../scatter/get_trace_color":1058,"./attributes":1086}],1091:[function(t,e,r){"use strict";var n={};n.attributes=t("./attributes"),n.supplyDefaults=t("./defaults"),n.colorbar=t("../scatter/colorbar"),n.calc=t("./calc"),n.plot=t("./plot"),n.style=t("./style"),n.hoverPoints=t("./hover"),n.eventData=t("./event_data"),n.selectPoints=t("./select"),n.moduleType="trace",n.name="scattergeo",n.basePlotModule=t("../../plots/geo"),n.categories=["geo","symbols","markerColorscale","showLegend","scatter-like"],n.meta={},e.exports=n},{"../../plots/geo":801,"../scatter/colorbar":1052,"./attributes":1086,"./calc":1087,"./defaults":1088,"./event_data":1089,"./hover":1090,"./plot":1092,"./select":1093,"./style":1094}],1092:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../lib"),a=t("../../constants/numerical").BADNUM,o=t("../../lib/topojson_utils").getTopojsonFeatures,s=t("../../lib/geo_location_utils").locationToFeature,l=t("../../lib/geojson_utils"),c=t("../scatter/subtypes"),u=t("./style");function f(t,e){var r=t[0].trace;if(Array.isArray(r.locations))for(var n=o(r,e),i=r.locationmode,l=0;l<t.length;l++){var c=t[l],u=s(i,c.loc,n);c.lonlat=u?u.properties.ct:[a,a]}}e.exports=function(t,e,r){for(var o=0;o<r.length;o++)f(r[o],e.topojson);function s(t,e){t.lonlat[0]===a&&n.select(e).remove()}var h=e.layers.frontplot.select(".scatterlayer").selectAll("g.trace.scattergeo").data(r,function(t){return t[0].trace.uid});h.enter().append("g").attr("class","trace scattergeo"),h.exit().remove(),h.selectAll("*").remove(),h.each(function(e){var r=e[0].node3=n.select(this),a=e[0].trace;if(c.hasLines(a)||"none"!==a.fill){var o=l.calcTraceToLineCoords(e),f="none"!==a.fill?l.makePolygon(o):l.makeLine(o);r.selectAll("path.js-line").data([{geojson:f,trace:a}]).enter().append("path").classed("js-line",!0).style("stroke-miterlimit",2)}c.hasMarkers(a)&&r.selectAll("path.point").data(i.identity).enter().append("path").classed("point",!0).each(function(t){s(t,this)}),c.hasText(a)&&r.selectAll("g").data(i.identity).enter().append("g").append("text").each(function(t){s(t,this)}),u(t,e)})}},{"../../constants/numerical":702,"../../lib":724,"../../lib/geo_location_utils":716,"../../lib/geojson_utils":717,"../../lib/topojson_utils":750,"../scatter/subtypes":1070,"./style":1094,d3:128}],1093:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h)&&!n.hasText(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1094:[function(t,e,r){"use strict";var n=t("d3"),i=t("../../components/drawing"),a=t("../../components/color"),o=t("../scatter/style").stylePoints;e.exports=function(t,e){e&&function(t,e){var r=e[0].trace,s=e[0].node3;s.style("opacity",e[0].trace.opacity),o(s,r,t),s.selectAll("path.js-line").style("fill","none").each(function(t){var e=n.select(this),r=t.trace,o=r.line||{};e.call(a.stroke,o.color).call(i.dashLine,o.dash||"",o.width||0),"none"!==r.fill&&e.call(a.fill,r.fillcolor)})}(t,e)}},{"../../components/color":598,"../../components/drawing":623,"../scatter/style":1069,d3:128}],1095:[function(t,e,r){"use strict";var n=t("../../plots/attributes"),i=t("../scatter/attributes"),a=t("../../components/colorscale/color_attributes"),o=t("../../constants/gl2d_dashes"),s=t("../../lib/extend").extendFlat,l=t("../../plot_api/edit_types").overrideAll,c=i.line,u=i.marker,f=u.line,h=e.exports=l({x:i.x,x0:i.x0,dx:i.dx,y:i.y,y0:i.y0,dy:i.dy,text:s({},i.text,{}),mode:{valType:"flaglist",flags:["lines","markers"],extras:["none"]},line:{color:c.color,width:c.width,dash:{valType:"enumerated",values:Object.keys(o),dflt:"solid"}},marker:s({},a("marker"),{symbol:u.symbol,size:u.size,sizeref:u.sizeref,sizemin:u.sizemin,sizemode:u.sizemode,opacity:u.opacity,showscale:u.showscale,colorbar:u.colorbar,line:s({},a("marker.line"),{width:f.width})}),connectgaps:i.connectgaps,fill:i.fill,fillcolor:i.fillcolor,hoveron:i.hoveron,selected:{marker:i.selected.marker},unselected:{marker:i.unselected.marker},opacity:s({},n.opacity,{editType:"calc"}),error_y:i.error_y,error_x:i.error_x},"calc","nested");h.x.editType=h.y.editType=h.x0.editType=h.y0.editType="calc+clearAxisTypes"},{"../../components/colorscale/color_attributes":606,"../../constants/gl2d_dashes":698,"../../lib/extend":713,"../../plot_api/edit_types":754,"../../plots/attributes":768,"../scatter/attributes":1048}],1096:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/constants"),a=t("../scatter/subtypes"),o=t("../scatter/xy_defaults"),s=t("../scatter/marker_defaults"),l=t("../scatter/line_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../../components/errorbars/defaults"),f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=!!t.marker&&/-open/.test(t.marker.symbol),m=a.isBubble(t),v=o(t,e,h,d);if(v){d("text"),d("mode",v<i.PTS_LINESONLY?"lines+markers":"lines"),a.hasLines(e)&&(d("connectgaps"),l(t,e,r,h,d));var g=[];a.hasMarkers(e)&&(s(t,e,r,h,d),d("marker.line.width",p||m?1:0),g.push("points")),d("fill"),"none"!==e.fill&&c(t,e,r,d),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),u(t,e,r,{axis:"y"}),u(t,e,r,{axis:"x",inherit:"y"}),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../components/errorbars/defaults":628,"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/xy_defaults":1072,"./attributes":1095}],1097:[function(t,e,r){(function(r){"use strict";var n=t("../../lib"),i=t("../scatter/get_trace_color"),a=t("../../components/errorbars"),o=t("object-assign"),s=t("../../plots/cartesian/axes"),l=t("kdgrass"),c=t("../../components/fx"),u=t("../scatter/subtypes"),f=t("../scatter/colorscale_calc"),h=t("../../components/drawing"),d=t("../scatter/make_bubble_size_func"),p=t("../../constants/gl2d_dashes"),m=t("../../lib/gl_format_color"),v=t("../scatter/link_traces"),g=t("regl-scatter2d"),y=t("regl-line2d"),b=t("regl-error2d"),x=t("color-normalize"),_=t("svg-path-sdf"),w=t("regl"),M=t("array-range"),k=t("../scatter/fill_hover_text"),A=t("fast-isnumeric"),T=c.constants.MAXDIST,E=200,S=20,L=S/20,C={},P=h.symbolFuncs[0](.05*S),z=1e5,O=/-dot/;function D(t,e,r,n){var 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t=this.map;t.removeLayer(this.idLayerFill),t.removeLayer(this.idLayerLine),t.removeLayer(this.idLayerCircle),t.removeLayer(this.idLayerSymbol),t.removeSource(this.idSourceFill),t.removeSource(this.idSourceLine),t.removeSource(this.idSourceCircle),t.removeSource(this.idSourceSymbol)},e.exports=function(t,e){var r=new i(t,e[0].trace.uid);return r.update(e),r}},{"./convert":1099}],1105:[function(t,e,r){"use strict";var n=t("../scatter/subtypes");e.exports=function(t,e){var r,i,a,o,s,l=t.cd,c=t.xaxis,u=t.yaxis,f=[],h=l[0].trace;if(!n.hasMarkers(h))return[];if(!1===e)for(s=0;s<l.length;s++)l[s].selected=0;else for(s=0;s<l.length;s++)i=(r=l[s]).lonlat,a=c.c2p(i),o=u.c2p(i),e.contains([a,o])?(f.push({pointNumber:s,lon:i[0],lat:i[1]}),r.selected=1):r.selected=0;return f}},{"../scatter/subtypes":1070}],1106:[function(t,e,r){"use strict";var n=t("../../lib/extend").extendFlat,i=t("../scatter/attributes"),a=t("../../plots/attributes"),o=i.line;e.exports={mode:i.mode,r:{valType:"data_array",editType:"calc+clearAxisTypes"},theta:{valType:"data_array",editType:"calc+clearAxisTypes"},thetaunit:{valType:"enumerated",values:["radians","degrees","gradians"],dflt:"degrees",editType:"calc+clearAxisTypes"},text:i.text,hovertext:i.hovertext,line:{color:o.color,width:o.width,dash:o.dash,shape:n({},o.shape,{values:["linear","spline"]}),smoothing:o.smoothing,editType:"calc"},connectgaps:i.connectgaps,marker:i.marker,cliponaxis:n({},i.cliponaxis,{dflt:!1}),textposition:i.textposition,textfont:i.textfont,fill:n({},i.fill,{values:["none","toself","tonext"]}),fillcolor:i.fillcolor,hoverinfo:n({},a.hoverinfo,{flags:["r","theta","text","name"]}),hoveron:i.hoveron,selected:i.selected,unselected:i.unselected}},{"../../lib/extend":713,"../../plots/attributes":768,"../scatter/attributes":1048}],1107:[function(t,e,r){"use strict";var n=t("fast-isnumeric"),i=t("../../constants/numerical").BADNUM,a=t("../../plots/cartesian/axes"),o=t("../scatter/colorscale_calc"),s=t("../scatter/arrays_to_calcdata"),l=t("../scatter/calc_selection"),c=t("../scatter/calc").calcMarkerSize;e.exports=function(t,e){var r,u=t._fullLayout,f=e.subplot,h=u[f].radialaxis,d=u[f].angularaxis,p=h.makeCalcdata(e,"r"),m=d.makeCalcdata(e,"theta"),v=e._length,g=new Array(v);for(var y=0;y<v;y++){var b=p[y],x=m[y],_=g[y]={};n(b)&&n(x)?(_.r=b,_.theta=x,_.rad=(r=x,d.c2rad(r,e.thetaunit))):_.r=i}var w=c(e,v);return a.expand(h,p,{ppad:w}),"linear"!==d.type&&(d.autorange=!0,a.expand(d,m),delete d.autorange),o(e),s(g,e),l(g,e),g}},{"../../constants/numerical":702,"../../plots/cartesian/axes":770,"../scatter/arrays_to_calcdata":1047,"../scatter/calc":1049,"../scatter/calc_selection":1050,"../scatter/colorscale_calc":1053,"fast-isnumeric":140}],1108:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/line_shape_defaults"),l=t("../scatter/text_defaults"),c=t("../scatter/fillcolor_defaults"),u=t("../scatter/constants").PTS_LINESONLY,f=t("./attributes");e.exports=function(t,e,r,h){function d(r,i){return n.coerce(t,e,f,r,i)}var p=d("r"),m=d("theta"),v=p&&m?Math.min(p.length,m.length):0;if(v){e._length=v,d("thetaunit"),d("mode",v<u?"lines+markers":"lines"),d("text"),d("hovertext"),i.hasLines(e)&&(o(t,e,r,h,d),s(t,e,d),d("connectgaps")),i.hasMarkers(e)&&a(t,e,r,h,d,{gradient:!0}),i.hasText(e)&&l(t,e,h,d);var g=[];(i.hasMarkers(e)||i.hasText(e))&&(d("cliponaxis"),d("marker.maxdisplayed"),g.push("points")),d("fill"),"none"!==e.fill&&(c(t,e,r,d),i.hasLines(e)||s(t,e,d)),"tonext"!==e.fill&&"toself"!==e.fill||g.push("fills"),d("hoveron",g.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,d)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/line_shape_defaults":1063,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"../scatter/text_defaults":1071,"./attributes":1106}],1109:[function(t,e,r){"use strict";var n=t("../scatter/hover"),i=t("../../plots/cartesian/axes"),a=t("../../lib");function o(t,e,r){var n=r.radialAxis,o=r.angularAxis,s=(t.hi||e.hoverinfo).split("+"),l=[];n._hovertitle="r",o._hovertitle="\u03b8";var c,u=o._c2rad(t.theta,e.thetaunit);function f(t,e){l.push(t._hovertitle+": "+i.tickText(t,e,"hover").text)}return c="linear"===o.type&&e.thetaunit!==o.thetaunit?"degrees"===o.thetaunit?a.rad2deg(u):u:t.theta,-1!==s.indexOf("all")&&(s=["r","theta"]),-1!==s.indexOf("r")&&f(n,n.c2r(t.r)),-1!==s.indexOf("theta")&&f(o,c),l.join("<br>")}e.exports={hoverPoints:function(t,e,r,i){var a=n(t,e,r,i);if(a&&!1!==a[0].index){var s=a[0];if(void 0===s.index)return a;var l=t.subplot,c=s.cd[s.index],u=s.trace;if(l.isPtWithinSector(c))return s.xLabelVal=void 0,s.yLabelVal=void 0,s.extraText=o(c,u,l),a}},makeHoverPointText:o}},{"../../lib":724,"../../plots/cartesian/axes":770,"../scatter/hover":1059}],1110:[function(t,e,r){"use strict";e.exports={moduleType:"trace",name:"scatterpolar",basePlotModule:t("../../plots/polar"),categories:["polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:t("./calc"),plot:t("./plot"),style:t("../scatter/style").style,hoverPoints:t("./hover").hoverPoints,selectPoints:t("../scatter/select"),meta:{}}},{"../../plots/polar":836,"../scatter/select":1068,"../scatter/style":1069,"./attributes":1106,"./calc":1107,"./defaults":1108,"./hover":1109,"./plot":1111}],1111:[function(t,e,r){"use strict";var n=t("../scatter/plot"),i=t("../../constants/numerical").BADNUM;e.exports=function(t,e,r){var a,o,s,l={xaxis:e.xaxis,yaxis:e.yaxis,plot:e.framework,layerClipId:e._hasClipOnAxisFalse?e.clipIds.circle:null},c=e.radialAxis,u=c.range;for(s=u[0]>u[1]?function(t){return t<=0}:function(t){return t>=0},a=0;a<r.length;a++)for(o=0;o<r[a].length;o++){var f=r[a][o],h=f.r;if(h!==i){var d=c.c2r(h)-u[0];if(s(d)){var p=f.rad;f.x=d*Math.cos(p),f.y=d*Math.sin(p);continue}f.intoCenter=[e.cxx,e.cyy]}f.x=i,f.y=i}n(t,l,r)}},{"../../constants/numerical":702,"../scatter/plot":1067}],1112:[function(t,e,r){"use strict";var n=t("../scatterpolar/attributes"),i=t("../scattergl/attributes");e.exports={mode:n.mode,r:n.r,theta:n.theta,thetaunit:n.thetaunit,text:n.text,line:i.line,connectgaps:i.connectgaps,marker:i.marker,fill:i.fill,fillcolor:i.fillcolor,hoverinfo:n.hoverinfo,hoveron:n.hoveron,selected:n.selected,unselected:n.unselected}},{"../scattergl/attributes":1095,"../scatterpolar/attributes":1106}],1113:[function(t,e,r){"use strict";var n=t("../../lib"),i=t("../scatter/subtypes"),a=t("../scatter/marker_defaults"),o=t("../scatter/line_defaults"),s=t("../scatter/fillcolor_defaults"),l=t("../scatter/constants").PTS_LINESONLY,c=t("./attributes");e.exports=function(t,e,r,u){function f(r,i){return n.coerce(t,e,c,r,i)}var h=f("r"),d=f("theta"),p=h&&d?Math.min(h.length,d.length):0;if(p){e._length=p,f("thetaunit"),f("mode",p<l?"lines+markers":"lines"),f("text"),i.hasLines(e)&&(o(t,e,r,u,f),f("connectgaps"));var m=[];i.hasMarkers(e)&&(a(t,e,r,u,f),m.push("points")),f("fill"),"none"!==e.fill&&s(t,e,r,f),"tonext"!==e.fill&&"toself"!==e.fill||m.push("fills"),f("hoveron",m.join("+")||"points"),n.coerceSelectionMarkerOpacity(e,f)}else e.visible=!1}},{"../../lib":724,"../scatter/constants":1054,"../scatter/fillcolor_defaults":1057,"../scatter/line_defaults":1061,"../scatter/marker_defaults":1066,"../scatter/subtypes":1070,"./attributes":1112}],1114:[function(t,e,r){"use strict";var n=t("kdgrass"),i=t("fast-isnumeric"),a=t("../scattergl"),o=t("../scatter/colorscale_calc"),s=t("../../plots/cartesian/axes"),l=t("../scatterpolar/hover").makeHoverPointText,c=t("../scatter/subtypes");e.exports={moduleType:"trace",name:"scatterpolargl",basePlotModule:t("../../plots/polar"),categories:["gl","regl","polar","symbols","markerColorscale","showLegend","scatter-like"],attributes:t("./attributes"),supplyDefaults:t("./defaults"),calc:function(t,e){var r=t._fullLayout,n=e.subplot,i=r[n].radialaxis,a=r[n].angularaxis,l=i.makeCalcdata(e,"r"),c=a.makeCalcdata(e,"theta"),u={};return e._length<l.length&&(l=l.slice(0,e._length)),e._length<c.length&&(c=c.slice(0,e._length)),o(e),u.r=l,u.theta=c,s.expand(i,l,{tozero:!0}),"linear"!==a.type&&(a.autorange=!0,s.expand(a,c),delete a.autorange),[{x:!1,y:!1,t:u,trace:e}]},plot:function(t,e,r){var o=e.radialAxis,s=e.angularAxis,l=o.range,u=a.sceneUpdate(t,e);return u.clear(),r.forEach(function(f,h){if(f&&f[0]&&f[0].trace){var d,p,m,v,g,y=f[0],b=y.trace,x=y.t,_=x.r,w=x.theta,M=_.slice(),k=w.slice();for(d=0;d<_.length;d++)p=_[d],v=w[d],g=s.c2rad(v,b.thetaunit),e.isPtWithinSector({r:p,rad:g})||(M[d]=NaN,k[d]=NaN);var A,T=_.length,E=new Array(2*T),S=Array(T),L=Array(T);for(d=0;d<T;d++)p=M[d],v=k[d],i(p)&&i(v)&&p>=0?(m=o.c2r(p)-l[0],A=v,g=s.c2rad(A,b.thetaunit),S[d]=E[2*d]=m*Math.cos(g),L[d]=E[2*d+1]=m*Math.sin(g)):S[d]=L[d]=E[2*d]=E[2*d+1]=NaN;var C=a.sceneOptions(t,e,b,E);C.fill&&!u.fill2d&&(u.fill2d=!0),C.marker&&!u.scatter2d&&(u.scatter2d=!0),C.line&&!u.line2d&&(u.line2d=!0),!C.errorX&&!C.errorY||u.error2d||(u.error2d=!0),c.hasMarkers(b)&&(C.selected.positions=C.unselected.positions=C.marker.positions),u.lineOptions.push(C.line),u.errorXOptions.push(C.errorX),u.errorYOptions.push(C.errorY),u.fillOptions.push(C.fill),u.markerOptions.push(C.marker),u.selectedOptions.push(C.selected),u.unselectedOptions.push(C.unselected),u.count=r.length,x.scene=u,x.index=h,x.x=S,x.y=L,x.rawx=S,x.rawy=L,x.r=_,x.theta=w,x.positions=E,x.count=T,x.tree=n(E,512)}}),a.plot(t,e,r)},hoverPoints:function(t,e,r,n){var i=t.cd[0].t,o=i.r,s=i.theta,c=a.hoverPoints(t,e,r,n);if(c&&!1!==c[0].index){var u=c[0];if(void 0===u.index)return c;var f=t.subplot,h=f.angularAxis,d=u.cd[u.index],p=u.trace;if(d.r=o[u.index],d.theta=s[u.index],d.rad=h.c2rad(d.theta,p.thetaunit),f.isPtWithinSector(d))return u.xLabelVal=void 0,u.yLabelVal=void 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n=t("../../lib/extend").extendFlat;r.splitToPanels=function(t){var e=[0,0],r=n({},t,{key:"header",type:"header",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!0,values:t.calcdata.headerCells.values[t.specIndex],rowBlocks:t.calcdata.headerRowBlocks,calcdata:n({},t.calcdata,{cells:t.calcdata.headerCells})});return[n({},t,{key:"cells1",type:"cells",page:0,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),n({},t,{key:"cells2",type:"cells",page:1,prevPages:e,currentRepaint:[null,null],dragHandle:!1,values:t.calcdata.cells.values[t.specIndex],rowBlocks:t.calcdata.rowBlocks}),r]},r.splitToCells=function(t){var e=function(t){var e=t.rowBlocks[t.page],r=e?e.rows[0].rowIndex:0,n=e?r+e.rows.length:0;return[r,n]}(t);return(t.values||[]).slice(e[0],e[1]).map(function(r,n){return{keyWithinBlock:n+("string"==typeof r&&r.match(/[<$&> 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n=t("../box/attributes"),i=t("../../lib/extend").extendFlat;e.exports={y:n.y,x:n.x,x0:n.x0,y0:n.y0,name:n.name,orientation:i({},n.orientation,{}),bandwidth:{valType:"number",min:0,editType:"calc"},scalegroup:{valType:"string",dflt:"",editType:"calc"},scalemode:{valType:"enumerated",values:["width","count"],dflt:"width",editType:"calc"},spanmode:{valType:"enumerated",values:["soft","hard","manual"],dflt:"soft",editType:"calc"},span:{valType:"info_array",items:[{valType:"any",editType:"calc"},{valType:"any",editType:"calc"}],editType:"calc"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,dflt:2,editType:"style"},editType:"plot"},fillcolor:n.fillcolor,points:i({},n.boxpoints,{}),jitter:i({},n.jitter,{}),pointpos:i({},n.pointpos,{}),marker:n.marker,text:n.text,box:{visible:{valType:"boolean",dflt:!1,editType:"plot"},width:{valType:"number",min:0,max:1,dflt:.25,editType:"plot"},fillcolor:{valType:"color",editType:"style"},line:{color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"style"},editType:"plot"},meanline:{visible:{valType:"boolean",dflt:!1,editType:"plot"},color:{valType:"color",editType:"style"},width:{valType:"number",min:0,editType:"style"},editType:"plot"},side:{valType:"enumerated",values:["both","positive","negative"],dflt:"both",editType:"plot"},selected:n.selected,unselected:n.unselected,hoveron:{valType:"flaglist",flags:["violins","points","kde"],dflt:"violins+points+kde",extras:["all"],editType:"style"}}},{"../../lib/extend":713,"../box/attributes":877}],1138:[function(t,e,r){"use 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r=t[0],a=r.t,s=r.trace,d=r.node3=n.select(this),p=c._numViolins,m="group"===c.violinmode&&p>1,v=a.bdPos=a.dPos*(1-c.violingap)*(1-c.violingroupgap)/(m?p:1),g=a.bPos=m?2*a.dPos*((a.num+.5)/p-.5)*(1-c.violingap):0;if(!0!==s.visible||a.empty)n.select(this).remove();else{var y=e[a.valLetter+"axis"],b=e[a.posLetter+"axis"],x="both"===s.side,_=x||"positive"===s.side,w=x||"negative"===s.side,M=s.box&&s.box.visible,k=s.meanline&&s.meanline.visible,A=c._violinScaleGroupStats[s.scalegroup];if(d.selectAll("path.violin").data(i.identity).enter().append("path").style("vector-effect","non-scaling-stroke").attr("class","violin").each(function(t){var e,r,i,o,l,c,u,f,d=n.select(this),p=t.density,m=p.length,M=t.pos+g,k=b.c2p(M);switch(s.scalemode){case"width":e=A.maxWidth/v;break;case"count":e=A.maxWidth/v*(A.maxCount/t.pts.length)}if(_){for(u=new Array(m),l=0;l<m;l++)(f=u[l]={})[a.posLetter]=M+p[l].v/e,f[a.valLetter]=p[l].t;r=h(u)}if(w){for(u=new 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-/**
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-/**
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- * @param {*} value The value to be converted
- * @param {*} scope The current scope of the value
- * @param {*} unit The unit of the value
- * @returns Decimally shifted value
- */
-function toReadableUnits(value, scope = '', unit = '') {
-  var scopes = ['p', 'n', 'u', 'm', '', 'K', 'M', 'G', 'T', 'P', 'E']; // Units: pico, nano, micro, milli, 0, Kilo, Mega, Giga, Tera, Peta, Exa
-  var scopeIndex = scopes.indexOf(scope);
-
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-
-/**
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- * @param {string} currentUnit The unit of the input value (default: 'B')
- * @returns Bytes in a readable scope
- */
-function toReadableByteUnits(value, currentUnit = 'B') {
-  var units = ['B', 'KB', 'MB', 'GB', 'TB', 'PB', 'EB']; // Units: Byte, Kilobyte, Megabyte, etc.
-  var unit_index = units.indexOf(currentUnit);
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-  while (value >= 1024 && unit_index < units.length - 1) {
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-/**
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- * @return Number of converted time
- */
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-    var units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years']   // Units of time
-    var steps = [1000.0, 1000.0, 1000.0, 60.0, 60.0, 24.0, 7.0, 4.35, 12.0]                // (Average) magnitude change between units
-
-    var givenUnitPos = units.indexOf(unit)
-    var targetUnitPos = units.indexOf(targetUnit)
-
-
-    // Obtain conversion rates in the given range
-    if (targetUnitPos > givenUnitPos) {
-      steps.slice(givenUnitPos, targetUnitPos).forEach( function(it) { value /= it} )
-    }
-    else if (targetUnitPos < givenUnitPos) {
-      steps.slice(targetUnitPos, givenUnitPos).forEach( function(it) { value *= it} )
-    }
-
-    return value
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-
-/**
- * Converts a time value to a human-readable string
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- * @param {*} unit Given unit of time
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- * @param {*} largestUnit The largest unit to convert to
- * @param {*} threshold The minimum value for the conversion to be included in the output
- * @return A human-readable string representation of the time value
- */
-function toReadableTimeUnits(value, unit = 'ms', smallestUnit = 's', largestUnit = 'years', threshold = null) {
-  const units = ['ns', 'mus', 'ms', 's', 'min', 'h', 'days', 'weeks', 'months', 'years'];
-  const steps = [1000, 1000, 1000, 60, 60, 24, 7, 4.35, 12];
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-  const smallestIdx = units.indexOf(smallestUnit);
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-
-  let remaining = convertTime(value, unit, units[largestIdx]);
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-    } else {
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-      remaining = 0;
-    }
-
-    if ((threshold === null && unitValue > 0) || (threshold !== null && unitValue > threshold)) {
-      let label = (unitValue === 1 && ['days', 'weeks', 'months', 'years'].includes(units[i]))
-        ? units[i].slice(0, -1)
-        : units[i];
-      let formatted = parseFloat(unitValue).toString();
-      parts.push(`${formatted}${label}`);
-    }
-  }
-
-  // Carry-over: if the last unit is exactly the conversion factor, increment previous unit
-  if (parts.length && smallestIdx > 0) {
-    let lastPart = parts[parts.length - 1];
-    let lastValue = parseFloat(lastPart.replace(/[^\d.]/g, ''));
-    let lastUnit = lastPart.replace(/[\d.]/g, '');
-    let conversionFactor = steps[smallestIdx - 1];
-    if (lastValue === conversionFactor) {
-      parts.pop();
-      let prevPart = parts[parts.length - 1];
-      let prevNum = parseFloat(prevPart.replace(/[^\d.]/g, ''));
-      let prevUnit = prevPart.replace(/[\d.]/g, '');
-      let newPrev = prevNum + 1;
-      parts[parts.length - 1] = `${parseFloat(newPrev).toString()}${prevUnit}`;
-    }
-  }
-
-  return parts.length ? parts.join(' ') : `0${smallestUnit}`;
-}
-
-//
-// Render functions
-//
-
-/**
- * Perform checks on the data before using other methods to process
- *
- * @param {*} data The data (number/string/...)
- * @param {*} type Type of the data
- * @param {function} parseFunction Function to parse the data
- * @returns
- */
-function check_data(data, type, parseFunction) {
-  if (type === 'sort') {
-    return parseFunction(data);
-  }
-  if($('#nf-table-humanreadable').val() == 'false'){
-    return data;
-  }
-  if (data == '-' || data == 0){
-    return data;
-  }
-  return null
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-
-/**
- * Render CO2 equivalents in desired output format
- *
- * @param {*} value CO2 equivalents in milli-grams
- * @param {*} type Type of the data
- * @returns CO2 equivalents as a readable unit
- */
-function make_co2e(value, type){
-  return check_data(value, type, parseFloat) ?? toReadableUnits(value, 'm', 'g');
-}
-
-/**
- * Render energy in desired output format
- *
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- * @param {*} type Type of the data
- * @returns Energy as a readable unit
- */
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-/**
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- *
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- * @param {*} type Type of the data
- * @returns The readable time
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-/**
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-  return check_data(data, type, parseFloat) ?? toReadableUnits(ci, 'm', 'gCO<sub>2</sub>e/kWh');
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-/**
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- * @returns The memory at a readable scale
- */
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-/**
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- */
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- * @param {*} type Type of the data
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-        // min equals max ==> show just a value
-        window.statsByProcess[processName][metricName] = [ metrics[metricName]['min'] ];
-      }
-      else {
-          // otherwise show all values
-          window.statsByProcess[processName][metricName] = ['min', 'q1', 'q2', 'q3', 'max'].map(stat => metrics[metricName][stat])
-      }
-      if (metricName == "time") {
-        window.statsByProcess[processName][metricName] = window.statsByProcess[processName][metricName].map(function(d,i){
-          return moment.duration(d).asMinutes().toFixed(1);
-        });
-      }
-    }
-  }
-
-  // Plot histograms of resource usage
-  var plot_data_total = [];
-  var plot_data_non_cached = [];
-  for(var processName in window.statsByProcess){
-
-    // Extract process statistics
-    var stats = window.statsByProcess[processName];
-
-    // Add CO2 Boxplot to plot
-    plot_data_total.push(
-      {
-        x:processName, y: norm_units(stats.co2e), name: processName,
-        type:'box', boxmean: true, boxpoints: false
-      }
-    );
-
-    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
-    plot_data_total.push(
-      {
-        x:processName, y: norm_units(stats.energy), name: processName,
-        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
-        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
-      }
-    );
-
-    // Add outline of CO2 emissions from non-cached processes to plot
-    plot_data_non_cached.push(
-      {
-        x:processName, y: norm_units(stats.co2e_non_cached), name: processName,
-        type:'box', boxmean: true, boxpoints: false,
-      }
-    );
-
-    // Add energy to link to the right y-axis, hiding the object, hover info and legend itself
-    plot_data_non_cached.push(
-      {
-        x:processName, y: norm_units(stats.energy_non_cached), name: processName,
-        type:'box', boxmean: true, boxpoints: false, yaxis: 'y2', showlegend: false,
-        hoverinfo: 'skip', marker: {color: 'rgba(0,0,0,0)'}, fillcolor: 'rgba(0,0,0,0)'
-      }
-    );
-  }
-
-  var layout = {
-    title: 'CO<sub>2</sub> emission & energy consumption',
-    legend: {
-      x: 1.1
-    },
-    xaxis: {
-      title: 'Processes',
-    },
-    yaxis: {
-      title: 'CO2e emission (g)',
-      rangemode: 'tozero',
-    },
-    yaxis2: {
-      title: 'Energy consumption (Wh)',
-      rangemode: 'tozero',
-      gridcolor: 'rgba(0, 0, 0, 0)', // transparent grid lines
-      overlaying: 'y',
-      side: 'right',
-    },
-    boxmode: 'group',
-  };
-
-  Plotly.newPlot('co2e-total-plot', plot_data_total, layout);
-  Plotly.newPlot('co2e-non-cached-plot', plot_data_non_cached, layout);
-
-  //
-  // Table creation functions
-  //
-
-  /**
-   * Function to create the table of tasks
-   */
-  function make_tasks_table(){
-    // reset
-      if ( $.fn.dataTable.isDataTable( '#tasks_table' ) ) {
-        $('#tasks_table').DataTable().destroy();
-      }
-
-      // Column titles
-      var energyConsumptionTitle = 'energy consumption (mWh)'; // Default column title
-      var co2EmissionsTitle = 'CO₂e emissions (mg)';
-      if ($('#nf-table-humanreadable').val() == 'true') {
-        energyConsumptionTitle = 'energy consumption'; // Change the column title if the button is selected
-        co2EmissionsTitle = 'CO₂e emissions';
-      }
-
-      var table = $('#tasks_table').DataTable({
-        data: window.data.trace,
-        columns: [
-          { title: 'task_id', data: 'task_id' },
-          { title: 'process', data: 'process' },
-          { title: 'tag', data: 'tag' },
-          { title: 'status', data: 'status', render: function(data, type, row){
-              var s = {
-                COMPLETED: 'success',
-                CACHED: 'secondary',
-                ABORTED: 'danger',
-                FAILED: 'danger'
-              }
-              return '<span class="badge badge-'+s[data]+'">'+data+'</span>';
-            }
-          },
-          { title: 'hash', data: 'hash', render:  function(data, type, row){
-              var script = '';
-              var lines = data.split("\n");
-              var ws_re = /^(\s+)/g;
-              var flws_match = ws_re.exec(lines[1]);
-              if(flws_match == null){
-                script = data;
-              } else {
-                for(var j=0; j<lines.length; j++){
-                  script += lines[j].replace(new RegExp('^'+flws_match[1]), '').replace(/\s+$/,'') + "\n";
-                }
-              }
-              return '<code>'+script+'</code>';
-            }
-          },
-          { title: energyConsumptionTitle, data: 'energy', type: 'num', render: make_energy },
-          { title: co2EmissionsTitle, data: 'co2e', type: 'num', render: make_co2e },
-          { title: `${co2EmissionsTitle} (market)`, data: 'co2eMarket', type: 'num', render: make_co2e },
-          { title: 'carbon intensity', data: 'ci', type: 'num', render: make_carbon_intensity },
-          { title: 'allocated cpus', data: 'cpus', type: 'num' },
-          { title: '%cpu', data: 'cpuUsage', type: 'num', render: make_core_usage_factor },
-          { title: 'allocated memory', data: 'memory', type: 'num', render: make_memory },
-          { title: 'realtime', data: 'time', type: 'num', render: make_time },
-          { title: 'power draw (in W/core)', data: 'powerdrawCPU', type: 'num', render: make_power_draw_cpu },
-          { title: 'cpu model', data: 'cpu_model' },
-        ],
-        "deferRender": true,
-        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
-        "scrollX": true,
-        "colReorder": true,
-        "columnDefs": [
-          { className: "id", "targets": [ 0,1,2,3 ] },
-          { className: "meta", "targets": [ 4,7,8,9,10,11 ] },
-          { className: "metrics", "targets": [ 5,6 ] }
-        ],
-        "buttons": [
-          {
-            extend: 'colvisGroup',
-            text: 'Metrics',
-            show: [ '.id', '.metrics' ],
-            hide: [ '.meta' ],
-          },
-          {
-            extend: 'colvisGroup',
-            text: 'Metadata',
-            show: [ '.id', '.meta'],
-            hide: [ '.metrics' ],
-          },
-          {
-            extend: 'colvisGroup',
-            text: 'All',
-            show: ':hidden',
-          },
-        ]
-      });
-
-      // Insert column filter button group
-      table.buttons().container()
-        .prependTo( $('#tasks_table_filter') );
-
-      // Column filter button group onClick event to highlight active filter
-      $('.buttons-colvisGroup').click(function(){
-        var def = 'btn-secondary';
-        var sel = 'btn-primary';
-        $('.buttons-colvisGroup').removeClass(sel).addClass(def);
-        $(this).addClass(sel).removeClass(def);
-      });
-
-      // Default filter highlight
-      $(".buttons-colvisGroup:contains('All')").click();
-  }
-
-  // Executor for task table creation (on page load)
-  if( window.data.trace==null ) {
-      // Hide tasks table if too many tasks are present
-      $('#tasks-present-table').remove()
-  }
-  else {
-      $('#tasks-omitted-table').remove()
-      // Dropdown changed about raw / human readable values in table
-      $('#nf-table-humanreadable').change(function(){
-        make_tasks_table();
-      });
-      // Make the table on page load
-      make_tasks_table();
-  }
-
-  /**
-   * Function to create the table of options / configurations
-   */
-  function make_options_table(){
-    // reset
-    if ( $.fn.dataTable.isDataTable( '#options_table' ) ) {
-      $('#options_table').DataTable().destroy();
-    }
-
-    var table = $('#options_table').DataTable({
-      data: window.options,
-      columns: [
-          { title: "Option", data: "option" },
-          { title: "Value", data: "value" }
-        ],
-        "deferRender": true,
-        "lengthMenu": [[25, 50, 100, -1], [25, 50, 100, "All"]],
-    });
-  }
-
-  // Executor for options table creation (on page load)
-  make_options_table();
-});
-
-  // Nextflow report data
-  window.data = {"trace":[{"task_id":"5","hash":"1a\/3734fe","native_id":"1934991","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.759","start":"2025-10-17 13:11:26.821","complete":"2025-10-17 13:11:26.914","duration":"155ms","realtime":"24ms","%cpu":"43.2%","%mem":"0.0%","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"158.5 KB","wchar":"1.2 KB","syscr":"310","syscw":"21","read_bytes":"0","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/1a\/3734fe7cb746984e14db5325e1e2cf","script":"\n    py_fasta_validator \\\n        -f toxin-ref.fa \\\n        2> \"toxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to toxin-ref.error.log\"\n\n    if [ $(cat \"toxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"toxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"toxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"toxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.03085015425","co2e":"0.01480807404","co2eMarket":"-","time":"6.6667E-6","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"43.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"4","hash":"64\/bf2fea","native_id":"1935008","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR","module":"-","container":"quay.io\/biocontainers\/py_fasta_validator:0.6--py37h595c7a6_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.779","start":"2025-10-17 13:11:26.832","complete":"2025-10-17 13:11:26.930","duration":"151ms","realtime":"19ms","%cpu":"100.0%","%mem":"0.0%","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"158.5 KB","wchar":"1.2 KB","syscr":"310","syscw":"21","read_bytes":"116 KB","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/64\/bf2fea1ef78d0d849e20d5acbaa09b","script":"\n    py_fasta_validator \\\n        -f setoxin-ref.fa \\\n        2> \"seatoxin-ref.error.log\" \\\n        || echo \"Errors from fasta_validate printed to seatoxin-ref.error.log\"\n\n    if [ $(cat \"seatoxin-ref.error.log\" | wc -l) -gt 0 ]; then\n        echo \"Validation failed...\"\n\n        cat \\\n            \"seatoxin-ref.error.log\"\n    else\n        echo \"Validation successful...\"\n\n        mv \\\n            \"seatoxin-ref.error.log\" \\\n            fasta_validate.stderr\n\n        echo \"Validation successful...\" \\\n            > \"seatoxin-ref.success.log\"\n    fi\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR\":\n        py_fasta_validator: $(py_fasta_validator -v | sed \'s\/.* version \/\/\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.0487800665","co2e":"0.02341443192","co2eMarket":"-","time":"5.2778E-6","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"100.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"8","hash":"16\/eeacd9","native_id":"1935020","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.788","start":"2025-10-17 13:11:26.836","complete":"2025-10-17 13:11:26.969","duration":"181ms","realtime":"54ms","%cpu":"76.2%","%mem":"0.0%","rss":"3.3 MB","vmem":"11.8 MB","peak_rss":"3.3 MB","peak_vmem":"11.8 MB","rchar":"130.9 KB","wchar":"2.7 KB","syscr":"245","syscw":"17","read_bytes":"2.2 MB","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/16\/eeacd9ed5ba4f1b9e421d0c84f9756","script":"\n    clustalo \\\n        -i toxin-ref.fa \\\n        --guidetree-out toxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"1","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.10963125","co2e":"0.052623","co2eMarket":"-","time":"1.5E-5","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"76.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"3","hash":"98\/b351d4","native_id":"1935048","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE","module":"-","container":"quay.io\/biocontainers\/clustalo:1.2.4--h87f3376_5","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.801","start":"2025-10-17 13:11:26.839","complete":"2025-10-17 13:11:26.999","duration":"198ms","realtime":"13ms","%cpu":"21.6%","%mem":"0.0%","rss":"0","vmem":"0","peak_rss":"0","peak_vmem":"0","rchar":"128.7 KB","wchar":"838 B","syscr":"245","syscw":"17","read_bytes":"0","write_bytes":"12 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/98\/b351d445264b97ba38fbfee926d9fd","script":"\n    clustalo \\\n        -i setoxin-ref.fa \\\n        --guidetree-out seatoxin-ref_CLUSTALO-args-default.dnd \\\n        --threads=2 \\\n        \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE\":\n        clustalo: $( clustalo --version )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"0","inv_ctxt":"0","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"0.01037288475","co2e":"0.00497898468","co2eMarket":"-","time":"3.6111E-6","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"21.6","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"6","hash":"61\/77c7ec","native_id":"1935385","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:26.932","start":"2025-10-17 13:11:26.977","complete":"2025-10-17 13:11:27.174","duration":"242ms","realtime":"197ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/61\/77c7ec3b6c330cf3849f0f1a0247aa","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in toxin-ref.fa         -output=sim_idscore         > \"toxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.3142904385","co2e":"0.63085941048","co2eMarket":"-","time":"5.47222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","cpu_model":"-"}, {"task_id":"7","hash":"a2\/0aa64d","native_id":"1935429","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-27978155697a3671f3ef9aead4b5c823a02cc0b7:548df772fe13c0232a7eab1bc1deb98b495a05ab-0","tag":"toxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:26.954","start":"2025-10-17 13:11:26.980","complete":"2025-10-17 13:11:28.326","duration":"1.4s","realtime":"1.2s","%cpu":"77.3%","%mem":"0.1%","rss":"20.6 MB","vmem":"361.4 MB","peak_rss":"20.6 MB","peak_vmem":"361.5 MB","rchar":"11.3 MB","wchar":"891 B","syscr":"1618","syscw":"18","read_bytes":"37.8 MB","write_bytes":"16 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/a2\/0aa64d4b5c61ea0a7db15ed5960777","script":"\n    calc_seqstats.py toxin-ref         toxin-ref.fa         \"toxin-ref_seqstats.csv\"         \"toxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"93","inv_ctxt":"23","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.40028022675","co2e":"1.15213450884","co2eMarket":"-","time":"3.244444E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"77.3","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"2","hash":"fc\/25e69c","native_id":"1935468","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM","module":"-","container":"quay.io\/biocontainers\/t-coffee:13.46.0.919e8c6b--hfc96bf3_0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:26.980","start":"2025-10-17 13:11:27.001","complete":"2025-10-17 13:11:27.189","duration":"209ms","realtime":"188ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/fc\/25e69c7b3302e5effdb816ebce706a","script":"\n    export TEMP=\'.\/\'\n    t_coffee -other_pg seq_reformat         -in setoxin-ref.fa         -output=sim_idscore         > \"seatoxin-ref.txt\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.2542466885","co2e":"0.60203841048","co2eMarket":"-","time":"5.22222E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","cpu_model":"-"}, {"task_id":"1","hash":"25\/4b9570","native_id":"1935539","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS","module":"-","container":"quay.io\/biocontainers\/mulled-v2-27978155697a3671f3ef9aead4b5c823a02cc0b7:548df772fe13c0232a7eab1bc1deb98b495a05ab-0","tag":"seatoxin-ref","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)","status":"COMPLETED","exit":"0","submit":"2025-10-17 13:11:27.038","start":"2025-10-17 13:11:27.210","complete":"2025-10-17 13:11:28.226","duration":"1.2s","realtime":"1s","%cpu":"85.2%","%mem":"0.1%","rss":"42 MB","vmem":"385.8 MB","peak_rss":"42 MB","peak_vmem":"385.8 MB","rchar":"11.3 MB","wchar":"632 B","syscr":"1618","syscw":"18","read_bytes":"29 MB","write_bytes":"16 KB","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/25\/4b9570a14b102c5bc2b9c48f35ebc8","script":"\n    calc_seqstats.py seatoxin-ref         setoxin-ref.fa         \"seatoxin-ref_seqstats.csv\"         \"seatoxin-ref_seqstats_summary.csv\"\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS\":\n        python: $(python --version | sed \'s\/Python \/\/g\')\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"-","vol_ctxt":"32","inv_ctxt":"40","hostname":"-","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz","energy":"2.246732976","co2e":"1.07843182848","co2eMarket":"-","time":"2.794444E-4","ci":"480.0","cpus":"2","powerdrawCPU":"8.125","cpuUsage":"85.2","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)","cpu_model":"Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz"}, {"task_id":"9","hash":"c6\/a8f9fe","native_id":"1935639","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"toxin-ref tree: CLUSTALO","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:27.228","start":"2025-10-17 13:11:27.314","complete":"2025-10-17 13:11:27.528","duration":"300ms","realtime":"214ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/c6\/a8f9fe0db551dd7400542c3a5293b4","script":"\n    famsa -gt import toxin-ref_CLUSTALO-args-default.dnd \\\n         \\\n         \\\n        -t 2 \\\n        toxin-ref.fa \\\n        toxin-ref_CLUSTALO-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.427705877","co2e":"0.68529882096","co2eMarket":"-","time":"5.94444E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)","cpu_model":"-"}, {"task_id":"10","hash":"0d\/2dee58","native_id":"1935670","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN","module":"-","container":"quay.io\/biocontainers\/famsa:2.2.2--h9f5acd7_0","tag":"seatoxin-ref tree: CLUSTALO","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:27.309","start":"2025-10-17 13:11:27.316","complete":"2025-10-17 13:11:27.597","duration":"288ms","realtime":"281ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/0d\/2dee580c69f9f948c93296909259ad","script":"\n    famsa -gt import seatoxin-ref_CLUSTALO-args-default.dnd \\\n         \\\n         \\\n        -t 2 \\\n        setoxin-ref.fa \\\n        seatoxin-ref_CLUSTALO-args-default_FAMSA-args-default.aln\n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN\":\n        famsa: $( famsa -help 2>&1 | head -n 2 | tail -n 1 | sed \'s\/ version \/\/g\' )\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.874700373","co2e":"0.89985617904","co2eMarket":"-","time":"7.80556E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)","cpu_model":"-"}, {"task_id":"12","hash":"0e\/918212","native_id":"1935777","process":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN","module":"-","container":"community.wave.seqera.io\/library\/t-coffee_tmalign_pigz:be7dac2ae6aba380","tag":"toxin-ref tree: DEFAULT  args: default","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","status":"FAILED","exit":"127","submit":"2025-10-17 13:11:27.558","start":"2025-10-17 13:11:27.599","complete":"2025-10-17 13:11:27.756","duration":"198ms","realtime":"157ms","%cpu":"-","%mem":"-","rss":"-","vmem":"-","peak_rss":"-","peak_vmem":"-","rchar":"-","wchar":"-","syscr":"-","syscw":"-","read_bytes":"-","write_bytes":"-","attempt":"1","workdir":"\/home\/luisasantus\/Desktop\/multiplesequencealign\/.nf-test\/tests\/89bf6407a87b2efb7ec274914f562eb6\/work\/0e\/9182126c1bc81b5e270fa1733618ae","script":"\n    export TEMP=\'.\/\'\n    export TMP_4_TCOFFEE=\".\/\"\n    export HOME=\".\/\"\n    t_coffee -seq toxin-ref.fa                           -output fasta_aln         -thread 2         -outfile toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln         \n\n    cat <<-END_VERSIONS > versions.yml\n    \"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN\":\n        tcoffee: $( t_coffee -version | awk \'{gsub(\"Version_\", \"\"); print $3}\')\n        pigz: $(echo $(pigz --version 2>&1) | sed \'s\/^.*pigz\\w*\/\/\' ))\n    END_VERSIONS\n    ","scratch":"-","queue":"-","cpus":"2","memory":"3 GB","disk":"-","time":"1h","env":"PYTHONNOUSERSITE=1\nR_PROFILE_USER=\/.Rprofile\nR_ENVIRON_USER=\/.Renviron\nJULIA_DEPOT_PATH=\/usr\/local\/share\/julia\nPATH=$PATH:\/home\/luisasantus\/Desktop\/multiplesequencealign\/bin\n","error_action":"FINISH","vol_ctxt":"-","inv_ctxt":"-","hostname":"-","cpu_model":"-","energy":"1.04742959425","co2e":"0.50276620524","co2eMarket":"-","time":"4.36111E-5","ci":"480.0","cpus":"2","powerdrawCPU":"11.45","cpuUsage":"200.0","memory":"3","name":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)","cpu_model":"-"}],"summary":{"CLUSTALO_GUIDETREE":{"co2e":{"all":[0.00497898468,0.052623],"total":0.05760198468,"mean":0.02880099234,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.00497898468,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.016889988510000002,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.02880099234,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.04071199617,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.052623},"energy":{"all":[0.01037288475,0.10963125],"total":0.12000413475,"mean":0.060002067375,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.01037288475,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.0351874760625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.060002067375,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.08481665868749999,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.10963125},"co2e_non_cached":{"all":[0.00497898468,0.052623],"total":0.05760198468,"mean":0.02880099234,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.00497898468,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.016889988510000002,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.02880099234,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.04071199617,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.052623},"energy_non_cached":{"all":[0.01037288475,0.10963125],"total":0.12000413475,"mean":0.060002067375,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.01037288475,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.0351874760625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.060002067375,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.08481665868749999,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.10963125},"co2e_market":{},"energy_market":{"all":[0.01037288475,0.10963125],"total":0.12000413475,"mean":0.060002067375,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","min":0.01037288475,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q1":0.0351874760625,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q2":0.060002067375,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)","q3":0.08481665868749999,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)","max":0.10963125}},"TCOFFEE_SEQREFORMAT_SIM":{"co2e":{"all":[0.60203841048,0.63085941048],"total":1.23289782096,"mean":0.61644891048,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","min":0.60203841048,"q1Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","q1":0.60924366048,"q2Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","q2":0.61644891048,"q3Label":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)","q3":0.62365416048,"maxLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)","max":0.63085941048},"energy":{"all":[1.2542466885,1.3142904385],"total":2.568537127,"mean":1.2842685635,"minLabel":"NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM 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deleted file mode 100644
index 3c6d6fb5..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt
+++ /dev/null
@@ -1,29 +0,0 @@
-Total CO2e footprint measures of this workflow run (including cached tasks):
-  CO2e emissions: 5.65 mg
-  Energy consumption: 11.77 mWh
-  CO2e emissions (market): -
-
-Which equals:
-  - 3.23E-5 km travelled by car
-  - It takes one tree 16.2s to sequester the equivalent amount of CO2 from the atmosphere
-  - 1.13E-5 % of a flight from Paris to London
-
-The calculation of these values is based on the carbon footprint computation method developed in the Green Algorithms project:
-  Lannelongue, L., Grealey, J., Inouye, M., Green Algorithms: Quantifying the Carbon Footprint of Computation.
-  Adv. Sci. 2021, 2100707. https://doi.org/10.1002/advs.202100707
-
-nf-co2footprint plugin version: 1.0.0
-
-nf-co2footprint options:
-  ci: 480.0
-  ciMarket: null
-  ignoreCpuModel: false
-  location: null
-  machineType: null
-  powerdrawCpuDefault: null
-  powerdrawMem: 0.3725
-  pue: 1.0
-  customCpuTdpFile: null
-  reportFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_report_2025-10-17_13-11-11.html
-  summaryFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_summary_2025-10-17_13-11-11.txt
-  traceFile: /home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
deleted file mode 100644
index 77aaf161..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/co2footprint_trace_2025-10-17_13-11-11.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-task_id	status	name	energy_consumption	CO2e	CO2e_market	carbon_intensity	%cpu	memory	realtime	cpus	powerdraw_cpu	cpu_model
-6	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (toxin-ref)	1.31 mWh	630.86 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	197ms	2	11.5 W	null
-3	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (seatoxin-ref)	10.37 uWh	4.98 ug	null	480.0 gCO₂e/kWh	21.6%	3.0 GB	13ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-2	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:TCOFFEE_SEQREFORMAT_SIM (seatoxin-ref)	1.25 mWh	602.04 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	188ms	2	11.5 W	null
-8	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:COMPUTE_TREES:CLUSTALO_GUIDETREE (toxin-ref)	109.63 uWh	52.62 ug	null	480.0 gCO₂e/kWh	76.2%	3.0 GB	54ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-9	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (toxin-ref tree: CLUSTALO)	1.43 mWh	685.3 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	214ms	2	11.5 W	null
-5	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (toxin-ref)	30.85 uWh	14.81 ug	null	480.0 gCO₂e/kWh	43.2%	3.0 GB	24ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-10	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:FAMSA_ALIGN (seatoxin-ref tree: CLUSTALO)	1.87 mWh	899.86 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	281ms	2	11.5 W	null
-4	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:FASTAVALIDATOR (seatoxin-ref)	48.78 uWh	23.41 ug	null	480.0 gCO₂e/kWh	100.0%	3.0 GB	19ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-12	FAILED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:ALIGN:TCOFFEE_ALIGN (toxin-ref tree: DEFAULT  args: default)	1.05 mWh	502.77 ug	null	480.0 gCO₂e/kWh	200.0%	3.0 GB	157ms	2	11.5 W	null
-1	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (seatoxin-ref)	2.25 mWh	1.08 mg	null	480.0 gCO₂e/kWh	85.2%	3.0 GB	1s 6ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
-7	COMPLETED	NFCORE_MULTIPLESEQUENCEALIGN:MULTIPLESEQUENCEALIGN:STATS:CALCULATE_SEQSTATS (toxin-ref)	2.4 mWh	1.15 mg	null	480.0 gCO₂e/kWh	77.3%	3.0 GB	1s 168ms	2	8.1 W	Intel(R) Core(TM) i7-9700 CPU @ 3.00GHz
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
deleted file mode 100644
index f2e7f10c..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml
+++ /dev/null
@@ -1,7 +0,0 @@
-CLUSTALO_GUIDETREE:
-  clustalo: 1.2.4
-FASTAVALIDATOR:
-  py_fasta_validator: null
-Workflow:
-    nf-core/multiplesequencealign: v1.2.0dev
-    Nextflow: 25.04.6
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json
deleted file mode 100644
index 1a0fed2a..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/pipeline_info/params_2025-10-17_13-11-21.json
+++ /dev/null
@@ -1,57 +0,0 @@
-{
-    "input": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/samplesheet/v1.0/samplesheet_test.csv",
-    "seqs": null,
-    "tools": "https://raw.githubusercontent.com/nf-core/test-datasets/multiplesequencealign/toolsheet/v1.0/toolsheet.csv",
-    "templates_suffix": ".pdb",
-    "pdbs_dir": null,
-    "tree": null,
-    "args_tree": null,
-    "aligner": null,
-    "args_aligner": null,
-    "skip_validation": false,
-    "skip_preprocessing": false,
-    "skip_pdbconversion": false,
-    "build_consensus": true,
-    "skip_stats": false,
-    "calc_sim": true,
-    "calc_seq_stats": true,
-    "extract_plddt": true,
-    "skip_eval": false,
-    "calc_sp": true,
-    "calc_tc": true,
-    "calc_irmsd": true,
-    "calc_gaps": true,
-    "calc_tcs": true,
-    "skip_compression": false,
-    "multiqc_config": null,
-    "multiqc_title": null,
-    "multiqc_logo": null,
-    "max_multiqc_email_size": "25.MB",
-    "multiqc_methods_description": null,
-    "skip_multiqc": false,
-    "outdir": "/home/luisasantus/Desktop/multiplesequencealign/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output",
-    "publish_dir_mode": "copy",
-    "email": null,
-    "email_on_fail": null,
-    "plaintext_email": false,
-    "monochrome_logs": false,
-    "hook_url": null,
-    "help": false,
-    "help_full": false,
-    "show_hidden": false,
-    "version": false,
-    "pipelines_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign",
-    "trace_report_suffix": "2025-10-17_13-11-11",
-    "config_profile_name": "Test profile",
-    "config_profile_description": "Minimal test dataset to check pipeline function",
-    "shiny_app": "/home/luisasantus/Desktop/multiplesequencealign/bin/shiny_app",
-    "skip_shiny": false,
-    "skip_visualisation": false,
-    "custom_config_version": "master",
-    "custom_config_base": "https://raw.githubusercontent.com/nf-core/configs/master",
-    "config_profile_contact": null,
-    "config_profile_url": null,
-    "validate_params": true,
-    "use_gpu": false,
-    "modules_testdata_base_path": "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/"
-}
\ No newline at end of file
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
deleted file mode 100644
index 24c4672f..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/stats/sequences/seqstats/toxin-ref_seqstats.csv
+++ /dev/null
@@ -1,21 +0,0 @@
-id,seq_id,sequence length
-toxin-ref,1kbt,60
-toxin-ref,2crt,60
-toxin-ref,2cdx,60
-toxin-ref,1cdta,60
-toxin-ref,1tgxa,60
-toxin-ref,1kxia,62
-toxin-ref,1tfs,60
-toxin-ref,1drs,59
-toxin-ref,1txb,73
-toxin-ref,2ctx,71
-toxin-ref,1ntn,72
-toxin-ref,1lsi,66
-toxin-ref,2abxa,74
-toxin-ref,2nbta,66
-toxin-ref,1nean,61
-toxin-ref,1nor,61
-toxin-ref,1cod,62
-toxin-ref,1nxb,62
-toxin-ref,1ntx,60
-toxin-ref,1fas,61
diff --git a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd b/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
deleted file mode 100644
index 3c9873e2..00000000
--- a/.nf-test/tests/89bf6407a87b2efb7ec274914f562eb6/output/trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd
+++ /dev/null
@@ -1,78 +0,0 @@
-(
-(
-1fas:0.347519
-,
-(
-1drs:0.329979
-,
-(
-1tfs:0.282813
-,
-(
-1ntx:0.21875
-,
-(
-1nxb:0.190838
-,
-(
-1cod:0.135246
-,
-(
-1nean:0.0655738
-,
-1nor:0.0655738
-):0.0696721
-):0.0555923
-):0.0279118
-):0.0640625
-):0.0471663
-):0.0175399
-):0.051554
-,
-(
-(
-1kxia:0.225521
-,
-(
-1tgxa:0.138542
-,
-(
-1cdta:0.108333
-,
-(
-2cdx:0.0833333
-,
-(
-1kbt:0.0583333
-,
-2crt:0.0583333
-):0.025
-):0.025
-):0.0302083
-):0.0869792
-):0.146659
-,
-(
-2nbta:0.295455
-,
-(
-2abxa:0.235201
-,
-(
-1lsi:0.234848
-,
-(
-1ntn:0.192488
-,
-(
-1txb:0.15493
-,
-2ctx:0.15493
-):0.0375587
-):0.0423602
-):0.000352517
-):0.0602536
-):0.0767252
-):0.0268929
-)
-;

From 974b8212c749453a86f9921831d10edb779028f3 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 13:26:50 +0100
Subject: [PATCH 17/58] fix prettier

---
 tests/default.nf.test | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index 884623f3..ecda5b01 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -32,4 +32,4 @@ nextflow_pipeline {
             )
         }
     }
-}
\ No newline at end of file
+}

From 2235fc9218b92371093d377359d7e4ab029f2546 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 14:42:09 +0100
Subject: [PATCH 18/58] remove ci actions and keep only nf test

---
 .github/workflows/ci.yml        |  80 -------------------
 .github/workflows/ci_master.yml | 134 --------------------------------
 2 files changed, 214 deletions(-)
 delete mode 100644 .github/workflows/ci.yml
 delete mode 100644 .github/workflows/ci_master.yml

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
deleted file mode 100644
index 34de79d1..00000000
--- a/.github/workflows/ci.yml
+++ /dev/null
@@ -1,80 +0,0 @@
-name: nf-core CI dev
-# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors upon dev PR
-on:
-  pull_request:
-    branches:
-      - dev
-  workflow_dispatch:
-
-env:
-  NXF_ANSI_LOG: false
-  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
-  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
-
-concurrency:
-  group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
-  cancel-in-progress: true
-
-jobs:
-  test:
-    name: "Run pipeline with test data (${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }})"
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        NXF_VER:
-          - "25.04.2"
-          - "latest-everything"
-        profile:
-          - "docker"
-        test_name:
-          - "test"
-          - "test_pdb"
-          - "test_no_sheet"
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
-
-      - name: Set up Nextflow
-        uses: nf-core/setup-nextflow@v2
-        with:
-          version: "${{ matrix.NXF_VER }}"
-
-      - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
-
-      - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results
-
-  parameters_stub:
-    name: Stub run
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        NXF_VER:
-          - "25.04.2"
-          - "latest-everything"
-        profile:
-          - "docker"
-        params:
-          - "--skip_stats --skip_eval --skip_visualisation --skip_validation --skip_preprocessing --skip_shiny --skip_multiqc"
-        test_name:
-          - "test_no_sheet"
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
-        with:
-          fetch-depth: 0
-
-      - name: Set up Nextflow
-        uses: nf-core/setup-nextflow@v2
-        with:
-          version: "${{ matrix.NXF_VER }}"
-
-      - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
-
-      - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
-        continue-on-error: ${{ matrix.NXF_VER == 'latest-everything' }}
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -stub-run -profile ${{ matrix.test_name }},${{ matrix.profile }} ${{ matrix.params }}  --outdir ./results
diff --git a/.github/workflows/ci_master.yml b/.github/workflows/ci_master.yml
deleted file mode 100644
index 18743029..00000000
--- a/.github/workflows/ci_master.yml
+++ /dev/null
@@ -1,134 +0,0 @@
-name: nf-core CI master
-# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors upon master PR
-on:
-  pull_request:
-    branches:
-      - master
-  release:
-    types: [published]
-  workflow_dispatch:
-
-env:
-  NXF_ANSI_LOG: false
-  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
-  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
-
-concurrency:
-  group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
-  cancel-in-progress: true
-
-jobs:
-  test:
-    name: "Run pipeline with test data (${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }})"
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        NXF_VER:
-          - "25.04.2"
-          - "latest-everything"
-        profile:
-          - "docker"
-          - "singularity"
-          - "conda"
-        test_name:
-          - "test"
-          - "test_conda"
-          - "test_pdb"
-          - "test_no_sheet"
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
-
-      - name: Set up Nextflow
-        uses: nf-core/setup-nextflow@v2
-        with:
-          version: "${{ matrix.NXF_VER }}"
-
-      - name: Set up Apptainer
-        if: matrix.profile == 'singularity'
-        uses: eWaterCycle/setup-apptainer@main
-
-      - name: Set up Singularity
-        if: matrix.profile == 'singularity'
-        run: |
-          mkdir -p $NXF_SINGULARITY_CACHEDIR
-          mkdir -p $NXF_SINGULARITY_LIBRARYDIR
-          echo $(realpath $CONDA)/condabin >> $GITHUB_PATH
-          echo $(realpath python) >> $GITHUB_PATH
-
-      - name: Set up Miniconda
-        if: matrix.profile == 'conda'
-        uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca # v3
-        with:
-          miniconda-version: "latest"
-          auto-update-conda: true
-          conda-solver: libmamba
-          channels: conda-forge,bioconda
-
-      - name: Set up Conda
-        if: matrix.profile == 'conda'
-        run: |
-          echo $(realpath $CONDA)/condabin >> $GITHUB_PATH
-          echo $(realpath python) >> $GITHUB_PATH
-
-      - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
-
-      - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
-        if: ${{ (matrix.test_name != 'test' && (matrix.profile == 'conda' || matrix.profile == 'singularity')) || (matrix.test_name != 'test_conda' && matrix.profile != 'conda' && matrix.profile != 'singularity') }}
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results
-
-  parameters_stub:
-    name: Stub run
-
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        NXF_VER:
-          - "25.04.2"
-          - "latest-everything"
-        profile:
-          - "docker"
-          - "singularity"
-        params:
-          - "--skip_stats"
-          - "--skip_eval"
-          - "--skip_visualisation"
-          - "--skip_validation"
-          - "--skip_preprocessing"
-          - "--skip_compression"
-          - "--skip_shiny"
-        test_name:
-          - "test"
-          - "test_conda"
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
-        with:
-          fetch-depth: 0
-
-      - name: Set up Nextflow
-        uses: nf-core/setup-nextflow@v2
-        with:
-          version: "${{ matrix.NXF_VER }}"
-
-      - name: Set up Apptainer
-        if: matrix.profile == 'singularity'
-        uses: eWaterCycle/setup-apptainer@main
-
-      - name: Set up Singularity
-        if: matrix.profile == 'singularity'
-        run: |
-          mkdir -p $NXF_SINGULARITY_CACHEDIR
-          mkdir -p $NXF_SINGULARITY_LIBRARYDIR
-          echo $(realpath $CONDA)/condabin >> $GITHUB_PATH
-          echo $(realpath python) >> $GITHUB_PATH
-
-      - name: Clean up Disk space
-        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
-
-      - name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
-        if: ${{ (matrix.test_name != 'test' && (matrix.profile == 'conda' || matrix.profile == 'singularity')) || (matrix.test_name != 'test_conda' && matrix.profile != 'conda' && matrix.profile != 'singularity') }}
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -stub-run -profile ${{ matrix.test_name }},${{ matrix.profile }} ${{ matrix.params }}  --outdir ./results

From d80961fae930af29730e41b49c22da232a90e297 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 14:44:46 +0100
Subject: [PATCH 19/58] Update learnmsa

---
 modules.json                                           | 2 +-
 modules/nf-core/learnmsa/align/main.nf                 | 2 +-
 modules/nf-core/learnmsa/align/tests/main.nf.test.snap | 6 +++---
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/modules.json b/modules.json
index 22b04847..f5bd46ac 100644
--- a/modules.json
+++ b/modules.json
@@ -65,7 +65,7 @@
                     },
                     "learnmsa/align": {
                         "branch": "master",
-                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
+                        "git_sha": "4b580a9cf7414a5649d1913144659e68e487d0fe",
                         "installed_by": ["modules"]
                     },
                     "mafft/align": {
diff --git a/modules/nf-core/learnmsa/align/main.nf b/modules/nf-core/learnmsa/align/main.nf
index c9d40fd7..7e7ecd25 100644
--- a/modules/nf-core/learnmsa/align/main.nf
+++ b/modules/nf-core/learnmsa/align/main.nf
@@ -1,7 +1,7 @@
 process LEARNMSA_ALIGN {
     tag "$meta.id"
     label 'process_medium'
-    container "registry.hub.docker.com/felbecker/learnmsa:2.0.9"
+    container "registry.hub.docker.com/felbecker/learnmsa:2.0.14"
 
     input:
     tuple val(meta), path(fasta)
diff --git a/modules/nf-core/learnmsa/align/tests/main.nf.test.snap b/modules/nf-core/learnmsa/align/tests/main.nf.test.snap
index 5c54c144..2a20fe83 100644
--- a/modules/nf-core/learnmsa/align/tests/main.nf.test.snap
+++ b/modules/nf-core/learnmsa/align/tests/main.nf.test.snap
@@ -27,9 +27,9 @@
             }
         ],
         "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "24.10.4"
+            "nf-test": "0.9.3",
+            "nextflow": "25.04.6"
         },
-        "timestamp": "2025-01-31T13:29:53.669503397"
+        "timestamp": "2025-11-05T14:13:46.857435403"
     }
 }
\ No newline at end of file

From b7cb0fde341a3a1e8d1b6b141d93f32aba3ed2c9 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 16:16:54 +0100
Subject: [PATCH 20/58] modify test

---
 tests/default.nf.test | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index ecda5b01..8f374c14 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -4,7 +4,7 @@ nextflow_pipeline {
     script "../main.nf"
     tag "pipeline"
 
-    test("-profile test") {
+    test("-profile test_tiny") {
 
         when {
             params {

From 3070cec2de38dc69af3feb5b7d8f1edda797ab2a Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 17:15:50 +0100
Subject: [PATCH 21/58] change tetss

---
 tests/default.nf.test      |  39 +++---
 tests/default.nf.test.snap | 248 +------------------------------------
 tests/nextflow.config      |   2 +-
 3 files changed, 31 insertions(+), 258 deletions(-)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index 8f374c14..bea2b6d9 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -8,27 +8,36 @@ nextflow_pipeline {
 
         when {
             params {
-                outdir = "$outputDir"
+                config_profile_name        = 'Test profile'
+                config_profile_description = 'Tiny test dataset to check pipeline function'
+                skip_stats      = false
+                calc_sim        = true
+                calc_seq_stats  = true
+                extract_plddt   = true
+                skip_eval       = false
+                calc_sp         = true
+                calc_tc         = true
+                calc_irmsd      = true
+                calc_gaps       = true
+                calc_tcs        = true
+                build_consensus = true
+
+    
+                // Define your base URL here
+                pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
+                
+                // Now you can use the variable
+                input = "${params.pipelines_testdata_base_path}/samplesheet/v1.1/samplesheet_test_af2.csv"
+                tools = "${params.pipelines_testdata_base_path}/toolsheet/v1.1/toolsheet_tiny.csv"
+    
+                outdir = "results"
             }
         }
 
         then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+
             assertAll(
                 { assert workflow.success},
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
             )
         }
     }
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 03251d98..57549e2a 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -1,256 +1,20 @@
 {
     "-profile test_tiny": {
         "content": [
-            78,
-            {
-                "CALCULATE_SEQSTATS": {
-                    "python": "3.11.0"
-                },
-                "CALC_GAPS": {
-                    "awk": "1.3.4 20200120"
-                },
-                "CONCAT_GAPS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_PLDDTS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SEQSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SIMSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SP": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TC": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TCS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONSENSUS": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "EXTRACT_PLDDT": {
-                    "awk": "1.3.4 20200120"
-                },
-                "FAMSA_ALIGN": {
-                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
-                },
-                "FAMSA_GUIDETREE": {
-                    "famsa": "2.2.2- (2022-10-09)"
-                },
-                "FASTAVALIDATOR": {
-                    "py_fasta_validator": 0.6
-                },
-                "MAFFT_ALIGN": {
-                    "mafft": 7.52,
-                    "pigz": "2.8)"
-                },
-                "MERGE_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "PARSE_IRMSD": {
-                    "python": "3.11.0"
-                },
-                "PARSE_SIM": {
-                    "awk": "1.3.4 20200120",
-                    "cat": 8.32
-                },
-                "PIGZ_COMPRESS": {
-                    "pigz": 2.8
-                },
-                "PREPARE_SHINY": {
-                    "bash": "5.1.16 3"
-                },
-                "TCOFFEE_ALNCOMPARE_SP": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALNCOMPARE_TC": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_EXTRACTFROMPDB": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_IRMSD": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_SEQREFORMAT_SIM": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_TCS": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
+            0,
+            null,
             [
-                "alignments",
-                "alignments/seatoxin-ref",
-                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln",
-                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz",
-                "alignments/toxin-ref",
-                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln",
-                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
-                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz",
-                "evaluation",
-                "evaluation/complete_summary_eval.csv",
-                "evaluation/consensus",
-                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.html",
-                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.sp_ascii",
-                "evaluation/consensus/toxin-ref_CONSENSUS.aln.html",
-                "evaluation/consensus/toxin-ref_CONSENSUS.aln.sp_ascii",
-                "evaluation/tcoffee_irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs",
-                "pipeline_info",
-                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
-                "reports",
-                "reports/multiqc",
-                "reports/multiqc/multiqc_data",
-                "reports/multiqc/multiqc_data/llms-full.txt",
-                "reports/multiqc/multiqc_data/multiqc.log",
-                "reports/multiqc/multiqc_data/multiqc.parquet",
-                "reports/multiqc/multiqc_data/multiqc_citations.txt",
-                "reports/multiqc/multiqc_data/multiqc_data.json",
-                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
-                "reports/multiqc/multiqc_data/multiqc_sources.txt",
-                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
-                "reports/multiqc/multiqc_plots",
-                "reports/multiqc/multiqc_plots/pdf",
-                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
-                "reports/multiqc/multiqc_plots/png",
-                "reports/multiqc/multiqc_plots/png/summary_stats.png",
-                "reports/multiqc/multiqc_plots/svg",
-                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
-                "reports/multiqc/multiqc_report.html",
-                "reports/shiny_app",
-                "reports/shiny_app/run.sh",
-                "reports/shiny_app/shiny_app.py",
-                "reports/shiny_app/static",
-                "reports/shiny_app/static/bootstrap.min.css",
-                "reports/shiny_app/static/favicon.ico",
-                "reports/shiny_app/static/style.css",
-                "reports/visualization",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html",
-                "reports/visualization/seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html",
-                "stats",
-                "stats/complete_summary_stats.csv",
-                "stats/sequences",
-                "stats/sequences/perc_sim",
-                "stats/sequences/perc_sim/seatoxin-ref.txt",
-                "stats/sequences/perc_sim/toxin-ref.txt",
-                "stats/sequences/seqstats",
-                "stats/sequences/seqstats/seatoxin-ref_seqstats.csv",
-                "stats/sequences/seqstats/toxin-ref_seqstats.csv",
-                "stats/structures",
-                "stats/structures/plddt",
-                "stats/structures/plddt/seatoxin-ref_full_plddt.csv",
-                "trees",
-                "trees/seatoxin-ref",
-                "trees/seatoxin-ref/seatoxin-ref_FAMSA-args-default.dnd",
-                "trees/toxin-ref",
-                "trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd"
+                "pipeline_info"
             ],
             [
-                "seatoxin-ref_CONSENSUS.aln:md5,fe31fc0603b7f4bcd06c13c474f8264d",
-                "seatoxin-ref_CONSENSUS.aln.gz:md5,fe31fc0603b7f4bcd06c13c474f8264d",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,514e6910e6a14353963d68d933c18171",
-                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
-                "toxin-ref_CONSENSUS.aln:md5,62ea7ad0d5d2b0527112c83c7d882160",
-                "toxin-ref_CONSENSUS.aln.gz:md5,62ea7ad0d5d2b0527112c83c7d882160",
-                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,d24caa61ecbe107f1f60d70c4de58263",
-                "toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,326de89fce0fc44b83ce026190449e74",
-                "complete_summary_eval.csv:md5,bb9d24f9bd527c2290a3b87d1413e170",
-                "seatoxin-ref_CONSENSUS.aln.html:md5,f1804566c5282a4b56dfe4661d802086",
-                "seatoxin-ref_CONSENSUS.aln.sp_ascii:md5,9b4c5540ef94da99b7b35e0670a95f2f",
-                "toxin-ref_CONSENSUS.aln.html:md5,fd506d7063ec61a2eb54c25da1328a57",
-                "toxin-ref_CONSENSUS.aln.sp_ascii:md5,3e6c0fbf406f6453ab1fc2015e1320f4",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd:md5,c10111ab2b6eab2454db77f526fd3d6b",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd:md5,68b1bc3bbbe887161207fb530fffc30a",
-                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,47a5091fde8a42ae52ccf17069ae1707",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,d133d1eab5a4700754c4a16d4a28f9ec",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,2124035ff0abf79322e7a2d3dda8c7c3",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,f351510a048a39584b4368d6bcfa504a",
-                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,12ba6f9cfd9c886acc90e8348b192dcb",
-                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,9a8ae84ad59c2c09a2d800f06464bd3c",
-                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,5ce4d42ab1fed394349e24482044b6f5",
-                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,27bcfb8bb054dbc165e3c88b16191f94",
-                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
-                "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
-                "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
-                "llms-full.txt:md5,c24b2411e190b283f192035be234813b",
-                "multiqc.log:md5,208b4f847d34bbd58156fb7229820891",
-                "multiqc.parquet:md5,cee84ce184250b81e1e3ccfb7ac5ae44",
-                "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
-                "multiqc_data.json:md5,f8d15e87d3f90651ff8b2e701cf982f1",
-                "multiqc_software_versions.txt:md5,73681362b16365ed0a0b410c11b0ec7d",
-                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
-                "multiqc_summary_stats.txt:md5,79f9c3918f85708b9df4a2811102498b",
-                "summary_stats.pdf:md5,389c9c1bdba2542cd07d6533c3933c3f",
-                "summary_stats.png:md5,6a210741392732854b6ca0ed91c2165f",
-                "summary_stats.svg:md5,89e492aaee4aeca7608204891dbec5d1",
-                "multiqc_report.html:md5,f065b6358e020827a0177c5dcdb97b30",
-                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
-                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
-                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
-                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
-                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html:md5,0dbcb624692ca5238f776c0ee15e7f2d",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,4552760dbe951b4ec96c9261d8244f7b",
-                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html:md5,a37c1ce23116b79688dafd6469664a8b",
-                "complete_summary_stats.csv:md5,19cee5e76d1a601b967a2c8c672e3a69",
-                "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
-                "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
-                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
-                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
-                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
-                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
-                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009"
+                
             ]
         ],
         "meta": {
             "nf-test": "0.9.3",
-            "nextflow": "25.04.6"
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2025-10-17T15:26:13.056762925"
+        "timestamp": "2025-11-05T16:39:55.675469295"
     },
     "-profile test": {
         "content": [
diff --git a/tests/nextflow.config b/tests/nextflow.config
index 1feb078c..b346cfba 100644
--- a/tests/nextflow.config
+++ b/tests/nextflow.config
@@ -7,7 +7,7 @@
 params {
     modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
     pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
-    outdir = 'results'
+    outputDir = 'results'
 }
 
 // Impose sensible resource limits for testing

From fe3811053a33c9d961c949cf1e5823e81d067545 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 17:18:02 +0100
Subject: [PATCH 22/58] fix precommit

---
 .nf-test.log          | 36 +++++++++++++++++-------------------
 tests/default.nf.test |  6 +++---
 2 files changed, 20 insertions(+), 22 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index dc1029ed..79bcb10c 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,19 +1,17 @@
-Oct-17 15:37:52.569 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Oct-17 15:37:52.589 [main] INFO  com.askimed.nf.test.App - Arguments: [test, --profile, test,docker, --update-snapshot]
-Oct-17 15:37:53.577 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.04.6
-Oct-17 15:37:53.579 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Oct-17 15:37:54.224 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.085 sec
-Oct-17 15:37:54.225 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Oct-17 15:37:54.225 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Oct-17 15:37:54.393 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Oct-17 15:37:54.394 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Oct-17 15:37:54.394 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Oct-17 15:37:54.394 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '3b90429f: -profile test'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Oct-17 15:41:32.089 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Oct-17 15:41:32.168 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test' do not match. Update snapshots flag set.
-Oct-17 15:41:32.169 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test'
-Oct-17 15:41:32.212 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Oct-17 15:41:32.213 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '3b90429f: -profile test' finished. status: FAILED
+Nov-05 16:41:48.044 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-05 16:41:48.058 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, docker]
+Nov-05 16:41:48.776 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-05 16:41:48.777 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-05 16:41:49.239 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.084 sec
+Nov-05 16:41:49.241 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-05 16:41:49.241 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-05 16:41:49.425 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-05 16:41:49.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-05 16:41:49.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-05 16:41:49.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-05 16:42:00.162 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-05 16:42:00.177 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' match.
+Nov-05 16:42:00.179 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: FAILED
 org.codehaus.groovy.runtime.powerassert.PowerAssertionError: 1 of 2 assertions failed
 	at com.askimed.nf.test.lang.extensions.GlobalMethods.assertAll(GlobalMethods.java:48)
 	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
@@ -25,7 +23,7 @@ org.codehaus.groovy.runtime.powerassert.PowerAssertionError: 1 of 2 assertions f
 	at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallStatic(CallSiteArray.java:55)
 	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:217)
 	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:240)
-	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test:20)
+	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test:38)
 	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test)
 	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
 	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
@@ -50,5 +48,5 @@ org.codehaus.groovy.runtime.powerassert.PowerAssertionError: 1 of 2 assertions f
 	at picocli.CommandLine.execute(CommandLine.java:2078)
 	at com.askimed.nf.test.App.run(App.java:39)
 	at com.askimed.nf.test.App.main(App.java:46)
-Oct-17 15:41:32.224 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: true
-Oct-17 15:41:32.228 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 1 tests failed. Done!
+Nov-05 16:42:00.183 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: true
+Nov-05 16:42:00.183 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 1 tests failed. Done!
diff --git a/tests/default.nf.test b/tests/default.nf.test
index bea2b6d9..8e4428e8 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -22,14 +22,14 @@ nextflow_pipeline {
                 calc_tcs        = true
                 build_consensus = true
 
-    
+
                 // Define your base URL here
                 pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
-                
+
                 // Now you can use the variable
                 input = "${params.pipelines_testdata_base_path}/samplesheet/v1.1/samplesheet_test_af2.csv"
                 tools = "${params.pipelines_testdata_base_path}/toolsheet/v1.1/toolsheet_tiny.csv"
-    
+
                 outdir = "results"
             }
         }

From 4acb846e710eafad07709d5885af222aa10ad234 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 17:24:32 +0100
Subject: [PATCH 23/58] test new test

---
 .nf-test.log          | 66 +++++++++----------------------------------
 tests/default.nf.test |  2 +-
 2 files changed, 15 insertions(+), 53 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index 79bcb10c..d1bc0c62 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,52 +1,14 @@
-Nov-05 16:41:48.044 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-05 16:41:48.058 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, docker]
-Nov-05 16:41:48.776 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-05 16:41:48.777 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-05 16:41:49.239 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.084 sec
-Nov-05 16:41:49.241 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-05 16:41:49.241 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-05 16:41:49.425 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-05 16:41:49.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-05 16:41:49.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-05 16:41:49.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-05 16:42:00.162 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-05 16:42:00.177 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' match.
-Nov-05 16:42:00.179 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: FAILED
-org.codehaus.groovy.runtime.powerassert.PowerAssertionError: 1 of 2 assertions failed
-	at com.askimed.nf.test.lang.extensions.GlobalMethods.assertAll(GlobalMethods.java:48)
-	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
-	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
-	at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107)
-	at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
-	at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.invoke(StaticMetaMethodSite.java:44)
-	at org.codehaus.groovy.runtime.callsite.StaticMetaMethodSite.callStatic(StaticMetaMethodSite.java:100)
-	at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallStatic(CallSiteArray.java:55)
-	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:217)
-	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callStatic(AbstractCallSite.java:240)
-	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test:38)
-	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test)
-	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
-	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
-	at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107)
-	at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
-	at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:274)
-	at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1030)
-	at groovy.lang.Closure.call(Closure.java:427)
-	at groovy.lang.Closure.call(Closure.java:406)
-	at com.askimed.nf.test.lang.TestCode.execute(TestCode.java:16)
-	at com.askimed.nf.test.lang.pipeline.PipelineTest.execute(PipelineTest.java:135)
-	at com.askimed.nf.test.core.TestExecutionEngine.execute(TestExecutionEngine.java:172)
-	at com.askimed.nf.test.commands.RunTestsCommand.execute(RunTestsCommand.java:322)
-	at com.askimed.nf.test.commands.AbstractCommand.call(AbstractCommand.java:43)
-	at com.askimed.nf.test.commands.AbstractCommand.call(AbstractCommand.java:18)
-	at picocli.CommandLine.executeUserObject(CommandLine.java:1953)
-	at picocli.CommandLine.access$1300(CommandLine.java:145)
-	at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2352)
-	at picocli.CommandLine$RunLast.handle(CommandLine.java:2346)
-	at picocli.CommandLine$RunLast.handle(CommandLine.java:2311)
-	at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
-	at picocli.CommandLine.execute(CommandLine.java:2078)
-	at com.askimed.nf.test.App.run(App.java:39)
-	at com.askimed.nf.test.App.main(App.java:46)
-Nov-05 16:42:00.183 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: true
-Nov-05 16:42:00.183 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 1 tests failed. Done!
+Nov-05 17:22:45.394 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-05 17:22:45.424 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, docker]
+Nov-05 17:22:46.369 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-05 17:22:46.371 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-05 17:22:46.956 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.117 sec
+Nov-05 17:22:46.959 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-05 17:22:46.959 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-05 17:22:47.129 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-05 17:22:47.130 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-05 17:22:47.130 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-05 17:22:47.130 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-05 17:24:12.343 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-05 17:24:12.344 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: false, skipped tests: false, failed tests: false
+Nov-05 17:24:12.344 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/default.nf.test b/tests/default.nf.test
index 8e4428e8..29288375 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -30,7 +30,7 @@ nextflow_pipeline {
                 input = "${params.pipelines_testdata_base_path}/samplesheet/v1.1/samplesheet_test_af2.csv"
                 tools = "${params.pipelines_testdata_base_path}/toolsheet/v1.1/toolsheet_tiny.csv"
 
-                outdir = "results"
+                outdir = "$outDir"
             }
         }
 

From 9421de24c4d55b1ef47bc160d799d3ff5a849f0f Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 5 Nov 2025 17:29:18 +0100
Subject: [PATCH 24/58] add test

---
 .nf-test.log          | 28 ++++++++++++++--------------
 tests/default.nf.test |  2 +-
 2 files changed, 15 insertions(+), 15 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index d1bc0c62..fc2f3deb 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,14 +1,14 @@
-Nov-05 17:22:45.394 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-05 17:22:45.424 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, docker]
-Nov-05 17:22:46.369 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-05 17:22:46.371 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-05 17:22:46.956 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.117 sec
-Nov-05 17:22:46.959 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-05 17:22:46.959 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-05 17:22:47.129 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-05 17:22:47.130 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-05 17:22:47.130 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-05 17:22:47.130 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-05 17:24:12.343 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-05 17:24:12.344 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: false, skipped tests: false, failed tests: false
-Nov-05 17:24:12.344 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-05 17:27:16.010 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-05 17:27:16.031 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, docker]
+Nov-05 17:27:17.205 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-05 17:27:17.206 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-05 17:27:17.883 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.142 sec
+Nov-05 17:27:17.885 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-05 17:27:17.886 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-05 17:27:18.064 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-05 17:27:18.066 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-05 17:27:18.067 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-05 17:27:18.067 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-05 17:28:40.025 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-05 17:28:40.027 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: false, skipped tests: false, failed tests: false
+Nov-05 17:28:40.027 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/default.nf.test b/tests/default.nf.test
index 29288375..b68f9233 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -30,7 +30,7 @@ nextflow_pipeline {
                 input = "${params.pipelines_testdata_base_path}/samplesheet/v1.1/samplesheet_test_af2.csv"
                 tools = "${params.pipelines_testdata_base_path}/toolsheet/v1.1/toolsheet_tiny.csv"
 
-                outdir = "$outDir"
+                outdir = "$outputDir"
             }
         }
 

From 6201712d6757f2f39b82a62e41c7a2ac1602c93b Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 14:00:37 +0100
Subject: [PATCH 25/58] Add tests

---
 .nf-test.log                     |  32 +-
 conf/test_no_sheet.config        |  11 +-
 tests/default.nf.test            |  43 ++-
 tests/default.nf.test.snap       | 259 +++++++++-------
 tests/nextflow.config            |   1 -
 tests/test_conda.nf.test         |  39 +++
 tests/test_conda.nf.test.snap    | 505 +++++++++++++++++++++++++++++++
 tests/test_no_sheet.nf.test      |  39 +++
 tests/test_no_sheet.nf.test.snap |  40 +++
 tests/test_pdb.nf.test           |  39 +++
 tests/test_pdb.nf.test.snap      | 126 ++++++++
 11 files changed, 980 insertions(+), 154 deletions(-)
 create mode 100644 tests/test_conda.nf.test
 create mode 100644 tests/test_conda.nf.test.snap
 create mode 100644 tests/test_no_sheet.nf.test
 create mode 100644 tests/test_no_sheet.nf.test.snap
 create mode 100644 tests/test_pdb.nf.test
 create mode 100644 tests/test_pdb.nf.test.snap

diff --git a/.nf-test.log b/.nf-test.log
index fc2f3deb..d08bb86c 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,14 +1,18 @@
-Nov-05 17:27:16.010 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-05 17:27:16.031 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, docker]
-Nov-05 17:27:17.205 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-05 17:27:17.206 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-05 17:27:17.883 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.142 sec
-Nov-05 17:27:17.885 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-05 17:27:17.886 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-05 17:27:18.064 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-05 17:27:18.066 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-05 17:27:18.067 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-05 17:27:18.067 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-05 17:28:40.025 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-05 17:28:40.027 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: false, skipped tests: false, failed tests: false
-Nov-05 17:28:40.027 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-06 13:16:34.568 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-06 13:16:34.586 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/test_conda.nf.test, --update-snapshot, --profile, +docker]
+Nov-06 13:16:36.284 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-06 13:16:36.285 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-06 13:16:36.945 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 59 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.139 sec
+Nov-06 13:16:36.948 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-06 13:16:36.948 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test]
+Nov-06 13:16:37.140 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-06 13:16:37.141 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-06 13:16:37.141 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test'.
+Nov-06 13:16:37.142 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test 'd732824b: -profile test_conda'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-06 13:20:05.769 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Init new snapshot file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test.snap'
+Nov-06 13:20:05.770 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshot '-profile test_conda' not found.
+Nov-06 13:20:05.771 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Created snapshot '-profile test_conda'
+Nov-06 13:20:06.410 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test.snap'
+Nov-06 13:20:06.411 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test 'd732824b: -profile test_conda' finished. status: PASSED
+Nov-06 13:20:06.412 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-06 13:20:06.415 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/conf/test_no_sheet.config b/conf/test_no_sheet.config
index 6d99c9dc..42ce0d03 100644
--- a/conf/test_no_sheet.config
+++ b/conf/test_no_sheet.config
@@ -22,9 +22,14 @@ params {
     config_profile_name        = 'Test profile without samplesheet'
     config_profile_description = 'Minimal test dataset to check pipeline function when the samplesheet is not used'
 
-    skip_stats      = true
-    skip_eval       = true
-    build_consensus = false
+    skip_stats         = true
+    skip_eval          = true
+    build_consensus    = false
+    skip_visualisation = true
+    skip_validation    = true
+    skip_preprocessing = true
+    skip_shiny         = true
+    skip_multiqc       = true
 
     // Input data
     seqs         = params.pipelines_testdata_base_path + 'multiplesequencealign/testdata/setoxin-ref.fa'
diff --git a/tests/default.nf.test b/tests/default.nf.test
index b68f9233..872d0f56 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -3,41 +3,36 @@ nextflow_pipeline {
     name "Test pipeline"
     script "../main.nf"
     tag "pipeline"
+    tag "test_tiny"
+    profile "test_tiny"
+
 
     test("-profile test_tiny") {
 
         when {
             params {
-                config_profile_name        = 'Test profile'
-                config_profile_description = 'Tiny test dataset to check pipeline function'
-                skip_stats      = false
-                calc_sim        = true
-                calc_seq_stats  = true
-                extract_plddt   = true
-                skip_eval       = false
-                calc_sp         = true
-                calc_tc         = true
-                calc_irmsd      = true
-                calc_gaps       = true
-                calc_tcs        = true
-                build_consensus = true
-
-
-                // Define your base URL here
-                pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
-
-                // Now you can use the variable
-                input = "${params.pipelines_testdata_base_path}/samplesheet/v1.1/samplesheet_test_af2.csv"
-                tools = "${params.pipelines_testdata_base_path}/toolsheet/v1.1/toolsheet_tiny.csv"
-
                 outdir = "$outputDir"
             }
         }
 
         then {
-
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
             assertAll(
-                { assert workflow.success},
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
             )
         }
     }
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 57549e2a..97249780 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -1,24 +1,7 @@
 {
     "-profile test_tiny": {
         "content": [
-            0,
-            null,
-            [
-                "pipeline_info"
-            ],
-            [
-                
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-05T16:39:55.675469295"
-    },
-    "-profile test": {
-        "content": [
-            95,
+            78,
             {
                 "CALCULATE_SEQSTATS": {
                     "python": "3.11.0"
@@ -26,12 +9,11 @@
                 "CALC_GAPS": {
                     "awk": "1.3.4 20200120"
                 },
-                "CLUSTALO_ALIGN": {
-                    "clustalo": "1.2.4",
-                    "pigz": "2.8)"
+                "CONCAT_GAPS": {
+                    "csvtk": "0.31.0"
                 },
-                "CLUSTALO_GUIDETREE": {
-                    "clustalo": "1.2.4"
+                "CONCAT_PLDDTS": {
+                    "csvtk": "0.31.0"
                 },
                 "CONCAT_SEQSTATS": {
                     "csvtk": "0.31.0"
@@ -39,6 +21,19 @@
                 "CONCAT_SIMSTATS": {
                     "csvtk": "0.31.0"
                 },
+                "CONCAT_SP": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TC": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TCS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONSENSUS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
                 "EXTRACT_PLDDT": {
                     "awk": "1.3.4 20200120"
                 },
@@ -51,24 +46,21 @@
                 "FASTAVALIDATOR": {
                     "py_fasta_validator": 0.6
                 },
-                "KALIGN_ALIGN": {
-                    "kalign": "3.4.0",
-                    "pigz": "2.8)"
-                },
                 "MAFFT_ALIGN": {
                     "mafft": 7.52,
                     "pigz": "2.8)"
                 },
-                "MAFFT_GUIDETREE": {
-                    "mafft": 7.525
+                "MERGE_EVAL": {
+                    "csvtk": "0.31.0"
                 },
-                "MAGUS_ALIGN": {
-                    "MAGUS": "0.2.0",
-                    "pigz": "2.8)"
+                "MERGE_STATS": {
+                    "csvtk": "0.31.0"
                 },
-                "MUSCLE5_ALIGN": {
-                    "muscle": 5.1,
-                    "pigz": "2.8)"
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
                 },
                 "PARSE_SIM": {
                     "awk": "1.3.4 20200120",
@@ -77,13 +69,8 @@
                 "PIGZ_COMPRESS": {
                     "pigz": 2.8
                 },
-                "REGRESSIVE_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
                 },
                 "TCOFFEE_ALNCOMPARE_SP": {
                     "tcoffee": "13.46.0.919e8c6b",
@@ -96,6 +83,10 @@
                 "TCOFFEE_EXTRACTFROMPDB": {
                     "tcoffee": "13.46.0.919e8c6b"
                 },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
                 "TCOFFEE_SEQREFORMAT_SIM": {
                     "tcoffee": "13.46.0.919e8c6b"
                 },
@@ -106,10 +97,6 @@
                 "UNTAR": {
                     "untar": 1.34
                 },
-                "UPP_ALIGN": {
-                    "upp": "4.5.5",
-                    "pigz": "2.4)"
-                },
                 "Workflow": {
                     "nf-core/multiplesequencealign": "v1.2.0dev"
                 }
@@ -117,37 +104,73 @@
             [
                 "alignments",
                 "alignments/seatoxin-ref",
-                "alignments/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz",
                 "alignments/toxin-ref",
-                "alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz",
                 "evaluation",
+                "evaluation/complete_summary_eval.csv",
+                "evaluation/consensus",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/tcoffee_irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_irmsd.irmsd",
                 "evaluation/tcoffee_tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs",
                 "pipeline_info",
                 "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "reports",
+                "reports/multiqc",
+                "reports/multiqc/multiqc_data",
+                "reports/multiqc/multiqc_data/llms-full.txt",
+                "reports/multiqc/multiqc_data/multiqc.log",
+                "reports/multiqc/multiqc_data/multiqc.parquet",
+                "reports/multiqc/multiqc_data/multiqc_citations.txt",
+                "reports/multiqc/multiqc_data/multiqc_data.json",
+                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
+                "reports/multiqc/multiqc_data/multiqc_sources.txt",
+                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
+                "reports/multiqc/multiqc_plots",
+                "reports/multiqc/multiqc_plots/pdf",
+                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
+                "reports/multiqc/multiqc_plots/png",
+                "reports/multiqc/multiqc_plots/png/summary_stats.png",
+                "reports/multiqc/multiqc_plots/svg",
+                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
+                "reports/multiqc/multiqc_report.html",
+                "reports/shiny_app",
+                "reports/shiny_app/run.sh",
+                "reports/shiny_app/shiny_app.py",
+                "reports/shiny_app/static",
+                "reports/shiny_app/static/bootstrap.min.css",
+                "reports/shiny_app/static/favicon.ico",
+                "reports/shiny_app/static/style.css",
+                "reports/visualization",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html",
+                "reports/visualization/seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html",
                 "stats",
+                "stats/complete_summary_stats.csv",
                 "stats/sequences",
                 "stats/sequences/perc_sim",
                 "stats/sequences/perc_sim/seatoxin-ref.txt",
@@ -160,61 +183,73 @@
                 "stats/structures/plddt/seatoxin-ref_full_plddt.csv",
                 "trees",
                 "trees/seatoxin-ref",
-                "trees/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default.dnd",
-                "trees/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd",
                 "trees/seatoxin-ref/seatoxin-ref_FAMSA-args-default.dnd",
-                "trees/seatoxin-ref/seatoxin-ref_MAFFT-args-default.dnd",
                 "trees/toxin-ref",
-                "trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd",
-                "trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd",
-                "trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd",
-                "trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd"
+                "trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd"
             ],
             [
-                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
-                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
-                "seatoxin-ref_DEFAULT-args-default_KALIGN-args-default.aln.gz:md5,f924f716efa6cda7b56f6d9d67ba5d44",
-                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz:md5,56686f3b3d853ef31b4b43683c30f8f5",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
-                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz:md5,20844d321995ed865277254366ad9523",
-                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz:md5,c6556744aeee7ba25803dab39963ef0b",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz:md5,9ec12eeea5bf34fc1149d69898728273",
-                "toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz:md5,321521faec856ce5a444b01f517c3800",
-                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,f65e2f5c176e9cd11a3c90c332c3069e",
-                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,0f4fc63937804b3e566d9764e94aeb02",
-                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.scores:md5,0bf4d8b10a274888f499095ef24589f7",
-                "seatoxin-ref_DEFAULT-args-default_KALIGN-args-default_tcs.tcs:md5,dbe9fc368b82979dd407c414138476df",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,24889456acb2ca3c67cefa42c50a8b9f",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,4b74c0c271882f51820654d557a698b1",
-                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,b5b1539aa0cf75f1b079395c77523b37",
-                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,890081067b40770970e894eed36df354",
-                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,cfc7e04656de59ce988d33e2108a4270",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,8db2422c778f61445344edeffa6b4c47",
-                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,43b5ec2cfa24eed12d9d6cc7799fb476",
-                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,f65d8b513294e27bdd856814c3b8dc92",
+                "seatoxin-ref_CONSENSUS.aln:md5,fe31fc0603b7f4bcd06c13c474f8264d",
+                "seatoxin-ref_CONSENSUS.aln.gz:md5,fe31fc0603b7f4bcd06c13c474f8264d",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,514e6910e6a14353963d68d933c18171",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "toxin-ref_CONSENSUS.aln:md5,62ea7ad0d5d2b0527112c83c7d882160",
+                "toxin-ref_CONSENSUS.aln.gz:md5,62ea7ad0d5d2b0527112c83c7d882160",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,d24caa61ecbe107f1f60d70c4de58263",
+                "toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,326de89fce0fc44b83ce026190449e74",
+                "complete_summary_eval.csv:md5,75be98fd438567ec76b776c04c68f862",
+                "seatoxin-ref_CONSENSUS.aln.html:md5,f1804566c5282a4b56dfe4661d802086",
+                "seatoxin-ref_CONSENSUS.aln.sp_ascii:md5,9b4c5540ef94da99b7b35e0670a95f2f",
+                "toxin-ref_CONSENSUS.aln.html:md5,fd506d7063ec61a2eb54c25da1328a57",
+                "toxin-ref_CONSENSUS.aln.sp_ascii:md5,3e6c0fbf406f6453ab1fc2015e1320f4",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd:md5,c10111ab2b6eab2454db77f526fd3d6b",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd:md5,68b1bc3bbbe887161207fb530fffc30a",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,47a5091fde8a42ae52ccf17069ae1707",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,d133d1eab5a4700754c4a16d4a28f9ec",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,2124035ff0abf79322e7a2d3dda8c7c3",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,f351510a048a39584b4368d6bcfa504a",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,12ba6f9cfd9c886acc90e8348b192dcb",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,9a8ae84ad59c2c09a2d800f06464bd3c",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,5ce4d42ab1fed394349e24482044b6f5",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,27bcfb8bb054dbc165e3c88b16191f94",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
+                "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
+                "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
+                "llms-full.txt:md5,10150b1ed2fb0d596cbcf24086c65506",
+                "multiqc.log:md5,eea5832fe7b52601b2d18868070f4e95",
+                "multiqc.parquet:md5,9bc7e74c5389414d3d1e66fc09763280",
+                "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
+                "multiqc_data.json:md5,a977000a9c50efb46c35d8ea318aa553",
+                "multiqc_software_versions.txt:md5,8249ccbdf0a9b5dc9f979124882ca3db",
+                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
+                "multiqc_summary_stats.txt:md5,b7ff8fe7a0479058665b6d9f217cb757",
+                "summary_stats.pdf:md5,cf6888bb072cfd7b84bd7d263bfd5492",
+                "summary_stats.png:md5,23b1537f305d30ced5ca3578778433da",
+                "summary_stats.svg:md5,51200a47bce4e8f2a888bb50deea1278",
+                "multiqc_report.html:md5,12d0e7a5c0dc3a29899542632c0421b5",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html:md5,0dbcb624692ca5238f776c0ee15e7f2d",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,f7d28fa32cb75aed8552370195513b76",
+                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html:md5,a37c1ce23116b79688dafd6469664a8b",
+                "complete_summary_stats.csv:md5,35ed5236bf4eed9077ef00edab4dac23",
                 "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
                 "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
                 "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
                 "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
                 "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
-                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
                 "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
-                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
-                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
-                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
-                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
+                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009"
             ]
         ],
         "meta": {
             "nf-test": "0.9.3",
-            "nextflow": "25.04.6"
+            "nextflow": "25.10.0"
         },
-        "timestamp": "2025-10-17T15:41:32.169056249"
+        "timestamp": "2025-11-06T12:57:43.900053043"
     }
 }
\ No newline at end of file
diff --git a/tests/nextflow.config b/tests/nextflow.config
index b346cfba..2dfa8e55 100644
--- a/tests/nextflow.config
+++ b/tests/nextflow.config
@@ -7,7 +7,6 @@
 params {
     modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
     pipelines_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/multiplesequencealign'
-    outputDir = 'results'
 }
 
 // Impose sensible resource limits for testing
diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
new file mode 100644
index 00000000..d6159bcb
--- /dev/null
+++ b/tests/test_conda.nf.test
@@ -0,0 +1,39 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_conda"
+    profile "test_conda"
+
+
+    test("-profile test_conda") {
+        
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_conda.nf.test.snap b/tests/test_conda.nf.test.snap
new file mode 100644
index 00000000..f503205f
--- /dev/null
+++ b/tests/test_conda.nf.test.snap
@@ -0,0 +1,505 @@
+{
+    "-profile test_conda": {
+        "content": [
+            271,
+            {
+                "CALCULATE_SEQSTATS": {
+                    "python": "3.11.0"
+                },
+                "CALC_GAPS": {
+                    "awk": "1.3.4 20200120"
+                },
+                "CLUSTALO_ALIGN": {
+                    "clustalo": "1.2.4",
+                    "pigz": "2.8)"
+                },
+                "CLUSTALO_GUIDETREE": {
+                    "clustalo": "1.2.4"
+                },
+                "CONCAT_GAPS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_PLDDTS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SEQSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SIMSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SP": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TC": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TCS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONSENSUS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "EXTRACT_PLDDT": {
+                    "awk": "1.3.4 20200120"
+                },
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "FOLDMASON_ALIGN": {
+                    "foldmason": "2.7bd21ed",
+                    "pigz": "2.8)"
+                },
+                "MAFFT_ALIGN": {
+                    "mafft": 7.52,
+                    "pigz": "2.8)"
+                },
+                "MAFFT_GUIDETREE": {
+                    "mafft": 7.525
+                },
+                "MAGUS_ALIGN": {
+                    "MAGUS": "0.2.0",
+                    "pigz": "2.8)"
+                },
+                "MERGE_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MTMALIGN_ALIGN": {
+                    "mTM-align": 20220104,
+                    "pigz": "2.8)"
+                },
+                "MUSCLE5_ALIGN": {
+                    "muscle": 5.1,
+                    "pigz": "2.8)"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
+                },
+                "PARSE_SIM": {
+                    "awk": "1.3.4 20200120",
+                    "cat": 8.32
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
+                },
+                "REGRESSIVE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE3D_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_SP": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_TC": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_SEQREFORMAT_SIM": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_TCS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/toxin-ref",
+                "alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "evaluation",
+                "evaluation/complete_summary_eval.csv",
+                "evaluation/consensus",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/tcoffee_irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_irmsd.irmsd",
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+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.tcs:md5,f471356c6fbd2ded677f446c1748c13f",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,461fc9bd7f27ec576b7299129e411c13",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,2ec0c2cbb381d51aadb9c4cb8df2c013",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,3f2762f21c823ffae44c4dbd3f937a97",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,3520c83711dae4525482bb74472d7af5",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,6343c7cb5f42d1ef40f74c3016b75941",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,24889456acb2ca3c67cefa42c50a8b9f",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,4b74c0c271882f51820654d557a698b1",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,b5b1539aa0cf75f1b079395c77523b37",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.scores:md5,bed8c781ba285bc4d25939bed76efe16",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.tcs:md5,91cdfdf774cda4cbcdc9d8129381140d",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,890081067b40770970e894eed36df354",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
+                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores:md5,6126690f4a22ed66df5b10689f71903a",
+                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs:md5,bd5c31b7cef9c2edf33bcd18016ec48a",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,68cb8c807b37337497a66daa0117d5d3",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,da89f674513336ed9f5c968d2fe9158a",
+                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,b5a18e94a7a7ca0c4060a0901f6ff363",
+                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,27bcfb8bb054dbc165e3c88b16191f94",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores:md5,1b5fec8307509fa8e4c5c86e2a2bd0d8",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs:md5,ca27c739aacb4828317bb38cd4c58d40",
+                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores:md5,0c163568eed898ec7de506bf74c8bf2c",
+                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs:md5,a35ebce05641c3cae28792e7f91acc7d",
+                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.scores:md5,d8d60ce4b7ba0e9dc34da6008022f1b7",
+                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.tcs:md5,a192bc084687b0c1c26f2b7829ea598b",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,5e786930c9639e3a7f7e11c741871db2",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,a8248c5e6176f498721b7b5934893428",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,1e86882c6b31e00a8f5ad42af49fe0a4",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
+                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,ecd8e6013889af7faf62d31997d91182",
+                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,468d3d0bbb3eb539a268e6f58ea8eebd",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,cfc7e04656de59ce988d33e2108a4270",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,8db2422c778f61445344edeffa6b4c47",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,43b5ec2cfa24eed12d9d6cc7799fb476",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,4ca7b374940d81fb43faed7bdeb10fb7",
+                "llms-full.txt:md5,69a59300ed932868f81d0a9524b053a1",
+                "multiqc.log:md5,da9db32e136e00188b6d714830465afd",
+                "multiqc.parquet:md5,b041dcef03de2272b24f57caf7b2c32c",
+                "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
+                "multiqc_data.json:md5,0bc49914ac36559bcfbd681c669a0acd",
+                "multiqc_software_versions.txt:md5,b8f56518ffb1785ee3044bda25f79b87",
+                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
+                "multiqc_summary_stats.txt:md5,246ab0c33f648e22914088163574fb4c",
+                "summary_stats.pdf:md5,54248cd18c36841a8dd45013e2b29f75",
+                "summary_stats.png:md5,110b6c5f5783abce3c52b2a6d5f517be",
+                "summary_stats.svg:md5,801cfb47bd443e558f7b4ce8aed2c342",
+                "multiqc_report.html:md5,716fbe1ac15de8f462d4d93eb70f7e18",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
+                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.html:md5,a160ae01b7f56c22bbf81e5292c33540",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html:md5,ad6ade9f0b773b794aa410dfb0234620",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default.html:md5,a688e78fa08ae081b3962aac55f4bd4a",
+                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.html:md5,a17555d8eb32bf935fd793f5c4b219c9",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html:md5,13fdb68149b8e4fba68947ec0eb62abf",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.html:md5,955b1bb27ab1ca265d8c67e7179d0432",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html:md5,7dcd7c88b85d9f15dd3b1b01c0280382",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,f7d28fa32cb75aed8552370195513b76",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.html:md5,8ded6fbf6faeefe2b00c926e7f079d95",
+                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.html:md5,d8bd92d6f2a3ad3d72e6e95246a5b3e0",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html:md5,494eed31abab8d10b558f4f136a9fb5f",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.html:md5,ef2f1fcea46d3acded102baeb4f61131",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.html:md5,b7b3723bd916e03f279644baf0de8395",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.html:md5,dbbb5b91a3b994607e91a55193587f8b",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.html:md5,b02892d4576a8b1333284b2b36d7bed2",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default.html:md5,3f6c2b556317a32c5815936e9b358d72",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default.html:md5,ea9f4828a5be8dfda94e5c075b1c979f",
+                "complete_summary_stats.csv:md5,19cee5e76d1a601b967a2c8c672e3a69",
+                "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
+                "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
+                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
+                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
+                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
+                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
+                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
+                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
+                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
+                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
+                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-06T13:20:05.771062196"
+    }
+}
\ No newline at end of file
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
new file mode 100644
index 00000000..b920ba39
--- /dev/null
+++ b/tests/test_no_sheet.nf.test
@@ -0,0 +1,39 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_no_sheet"
+    profile "test_no_sheet"
+
+
+    test("-profile test_no_sheet - stub") {
+        
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_no_sheet.nf.test.snap b/tests/test_no_sheet.nf.test.snap
new file mode 100644
index 00000000..a53079a7
--- /dev/null
+++ b/tests/test_no_sheet.nf.test.snap
@@ -0,0 +1,40 @@
+{
+    "-profile test_no_sheet - stub": {
+        "content": [
+            3,
+            {
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/setoxin-ref",
+                "alignments/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "trees",
+                "trees/setoxin-ref",
+                "trees/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd"
+            ],
+            [
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-06T13:00:00.803514333"
+    }
+}
\ No newline at end of file
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
new file mode 100644
index 00000000..f1dd99f0
--- /dev/null
+++ b/tests/test_pdb.nf.test
@@ -0,0 +1,39 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_pdb"
+    profile "test_pdb"
+
+
+    test("-profile test_pdb") {
+        
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_pdb.nf.test.snap b/tests/test_pdb.nf.test.snap
new file mode 100644
index 00000000..1cc88967
--- /dev/null
+++ b/tests/test_pdb.nf.test.snap
@@ -0,0 +1,126 @@
+{
+    "-profile test_pdb": {
+        "content": [
+            30,
+            {
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "FOLDMASON_ALIGN": {
+                    "foldmason": "2.7bd21ed",
+                    "pigz": "2.8)"
+                },
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MTMALIGN_ALIGN": {
+                    "mTM-align": 20220104,
+                    "pigz": "2.8)"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
+                },
+                "TCOFFEE3D_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
+                "evaluation",
+                "evaluation/tcoffee_irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "reports",
+                "reports/multiqc",
+                "reports/multiqc/multiqc_data",
+                "reports/multiqc/multiqc_data/llms-full.txt",
+                "reports/multiqc/multiqc_data/multiqc.log",
+                "reports/multiqc/multiqc_data/multiqc.parquet",
+                "reports/multiqc/multiqc_data/multiqc_citations.txt",
+                "reports/multiqc/multiqc_data/multiqc_data.json",
+                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
+                "reports/multiqc/multiqc_data/multiqc_sources.txt",
+                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
+                "reports/multiqc/multiqc_plots",
+                "reports/multiqc/multiqc_plots/pdf",
+                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
+                "reports/multiqc/multiqc_plots/png",
+                "reports/multiqc/multiqc_plots/png/summary_stats.png",
+                "reports/multiqc/multiqc_plots/svg",
+                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
+                "reports/multiqc/multiqc_report.html",
+                "reports/shiny_app",
+                "reports/shiny_app/run.sh",
+                "reports/shiny_app/shiny_app.py",
+                "reports/shiny_app/static",
+                "reports/shiny_app/static/bootstrap.min.css",
+                "reports/shiny_app/static/favicon.ico",
+                "reports/shiny_app/static/style.css",
+                "reports/visualization",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html"
+            ],
+            [
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz:md5,bfec7de9e22fb892f573415feab92188",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz:md5,61a0244fb011d129017b7be3e35e72b2",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz:md5,595c2526ce7637b4630837a607914151",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,260e6ec190766c5dfc59a76a02c8efa7",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,59bfba29741dcf51f5ef2589e50c746c",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,380cb01e89fac0f2eae9f5418933b8e5",
+                "llms-full.txt:md5,1792b71949bcf2f12932f821ad6a65b4",
+                "multiqc.log:md5,ba696955fa05c236285b69f1a9865ef1",
+                "multiqc.parquet:md5,23d3dcf948281acf8768dbf1acdaa20f",
+                "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
+                "multiqc_data.json:md5,abd3e3e2d54224d63e0eeed29b3c248b",
+                "multiqc_software_versions.txt:md5,659336ce694409cef38e2b36259e83ef",
+                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
+                "multiqc_summary_stats.txt:md5,3451fe7e38bfb8b4bfe85da918c5027c",
+                "summary_stats.pdf:md5,db4afee798873f4a884f567f7c9c0373",
+                "summary_stats.png:md5,9faeff00bf2e3c1933ead4fe1f2a903f",
+                "summary_stats.svg:md5,98fa0cea92475f8318f6e3ed97e4b266",
+                "multiqc_report.html:md5,99e906096a2ed0ba6e7784d1e212b011",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html:md5,1e7af46c3224697cfe2bf3b96aa524c6",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html:md5,64715692dea284bb8deb2586de138b57",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html:md5,0786510d9931106e5415934317c8c2e9"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-06T12:59:24.474245641"
+    }
+}
\ No newline at end of file

From 50e024dc3d359e65747470d454d4f63d0f850538 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 14:03:34 +0100
Subject: [PATCH 26/58] fix precommit

---
 tests/default.nf.test       | 1 +
 tests/test_conda.nf.test    | 1 +
 tests/test_no_sheet.nf.test | 1 +
 tests/test_pdb.nf.test      | 1 +
 4 files changed, 4 insertions(+)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index 872d0f56..c25ff59d 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -37,3 +37,4 @@ nextflow_pipeline {
         }
     }
 }
+
diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
index d6159bcb..1b6d8e78 100644
--- a/tests/test_conda.nf.test
+++ b/tests/test_conda.nf.test
@@ -37,3 +37,4 @@ nextflow_pipeline {
         }
     }
 }
+
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
index b920ba39..4a5c0001 100644
--- a/tests/test_no_sheet.nf.test
+++ b/tests/test_no_sheet.nf.test
@@ -37,3 +37,4 @@ nextflow_pipeline {
         }
     }
 }
+
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
index f1dd99f0..ff3c6ca1 100644
--- a/tests/test_pdb.nf.test
+++ b/tests/test_pdb.nf.test
@@ -37,3 +37,4 @@ nextflow_pipeline {
         }
     }
 }
+

From 95f6d54a3c93804748a50d86de1ce3addfc07708 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 14:06:13 +0100
Subject: [PATCH 27/58] fix precommit

---
 tests/default.nf.test       | 1 -
 tests/test_conda.nf.test    | 1 -
 tests/test_no_sheet.nf.test | 1 -
 tests/test_pdb.nf.test      | 1 -
 4 files changed, 4 deletions(-)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index c25ff59d..872d0f56 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -37,4 +37,3 @@ nextflow_pipeline {
         }
     }
 }
-
diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
index 1b6d8e78..d6159bcb 100644
--- a/tests/test_conda.nf.test
+++ b/tests/test_conda.nf.test
@@ -37,4 +37,3 @@ nextflow_pipeline {
         }
     }
 }
-
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
index 4a5c0001..b920ba39 100644
--- a/tests/test_no_sheet.nf.test
+++ b/tests/test_no_sheet.nf.test
@@ -37,4 +37,3 @@ nextflow_pipeline {
         }
     }
 }
-
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
index ff3c6ca1..f1dd99f0 100644
--- a/tests/test_pdb.nf.test
+++ b/tests/test_pdb.nf.test
@@ -37,4 +37,3 @@ nextflow_pipeline {
         }
     }
 }
-

From 5a6949a056d7897158936ef6df09e17d8373a934 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 14:13:16 +0100
Subject: [PATCH 28/58] fix precommit

---
 tests/test_conda.nf.test    | 2 +-
 tests/test_no_sheet.nf.test | 3 +--
 tests/test_pdb.nf.test      | 2 +-
 3 files changed, 3 insertions(+), 4 deletions(-)

diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
index d6159bcb..a34edd63 100644
--- a/tests/test_conda.nf.test
+++ b/tests/test_conda.nf.test
@@ -8,7 +8,7 @@ nextflow_pipeline {
 
 
     test("-profile test_conda") {
-        
+
         when {
             params {
                 outdir = "$outputDir"
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
index b920ba39..50ce9516 100644
--- a/tests/test_no_sheet.nf.test
+++ b/tests/test_no_sheet.nf.test
@@ -6,9 +6,8 @@ nextflow_pipeline {
     tag "test_no_sheet"
     profile "test_no_sheet"
 
-
     test("-profile test_no_sheet - stub") {
-        
+
         when {
             params {
                 outdir = "$outputDir"
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
index f1dd99f0..fdd01640 100644
--- a/tests/test_pdb.nf.test
+++ b/tests/test_pdb.nf.test
@@ -8,7 +8,7 @@ nextflow_pipeline {
 
 
     test("-profile test_pdb") {
-        
+
         when {
             params {
                 outdir = "$outputDir"

From be40a1fa64a6b477a5bc5e242521f6d377f5edcd Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 14:40:03 +0100
Subject: [PATCH 29/58] Add tetss

---
 .nf-test.log                                  | 36 +++++++++----------
 .../main.nf                                   |  9 +++++
 tests/test_pdb.nf.test.snap                   | 22 ++++++------
 3 files changed, 38 insertions(+), 29 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index d08bb86c..673f4423 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,18 +1,18 @@
-Nov-06 13:16:34.568 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-06 13:16:34.586 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/test_conda.nf.test, --update-snapshot, --profile, +docker]
-Nov-06 13:16:36.284 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-06 13:16:36.285 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-06 13:16:36.945 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 59 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.139 sec
-Nov-06 13:16:36.948 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-06 13:16:36.948 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test]
-Nov-06 13:16:37.140 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-06 13:16:37.141 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-06 13:16:37.141 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test'.
-Nov-06 13:16:37.142 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test 'd732824b: -profile test_conda'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-06 13:20:05.769 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Init new snapshot file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test.snap'
-Nov-06 13:20:05.770 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshot '-profile test_conda' not found.
-Nov-06 13:20:05.771 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Created snapshot '-profile test_conda'
-Nov-06 13:20:06.410 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_conda.nf.test.snap'
-Nov-06 13:20:06.411 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test 'd732824b: -profile test_conda' finished. status: PASSED
-Nov-06 13:20:06.412 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-06 13:20:06.415 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-06 14:36:27.548 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-06 14:36:27.567 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/test_pdb.nf.test, --update-snapshot, --profile, +docker]
+Nov-06 14:36:28.603 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-06 14:36:28.604 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-06 14:36:29.384 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 60 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.253 sec
+Nov-06 14:36:29.385 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-06 14:36:29.385 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test]
+Nov-06 14:36:29.599 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-06 14:36:29.600 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-06 14:36:29.600 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test'.
+Nov-06 14:36:29.600 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '594f046f: -profile test_pdb'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-06 14:37:44.933 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test.snap'
+Nov-06 14:37:45.187 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_pdb' do not match. Update snapshots flag set.
+Nov-06 14:37:45.187 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_pdb'
+Nov-06 14:37:45.426 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test.snap'
+Nov-06 14:37:45.427 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '594f046f: -profile test_pdb' finished. status: PASSED
+Nov-06 14:37:45.430 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-06 14:37:45.434 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index 8f475c62..e60dcbb6 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -487,6 +487,10 @@ def latesTraceFileToCSV(String traceDirPath, String filePattern) {
     // Identify and parse the latest trace file based on the given pattern
     def traceFile = new File(traceDirPath).listFiles().findAll { it.name.startsWith(filePattern) }.sort { -it.lastModified() }.take(1)[0]
 
+    // if trace file does not exist, return empty list
+    if (!traceFile) {
+        return []
+    }
     // Keep only the lines that report running times related to evaluation
     def header = traceFile.readLines()[0].replaceAll("\t", ",")
     def traceFileAlign = traceFile.readLines().findAll { it.contains("COMPLETED") && it.contains("MULTIPLESEQUENCEALIGN:ALIGN") }.collect { it.replaceAll("\t", ",") }.join("\n")
@@ -730,6 +734,11 @@ def merge_summary_and_traces(summary_file, trace_dir_path, versions_path, outFil
     // -------------------
     // SUMMARY FILE
     // -------------------
+    // if summary file does not exist, return
+    if (!new File(summary_file).exists()) {
+        log.warn "Summary file ${summary_file} does not exist. Skipping merge with trace data."
+        return
+    }
 
     // Parse the summary data (scientific accuracy file: SP, TC etc.)
     def data = parseCsv(new File(summary_file).readLines().collect { it.replaceAll("\t", ",") }.join("\n"))
diff --git a/tests/test_pdb.nf.test.snap b/tests/test_pdb.nf.test.snap
index 1cc88967..01867fd0 100644
--- a/tests/test_pdb.nf.test.snap
+++ b/tests/test_pdb.nf.test.snap
@@ -95,25 +95,25 @@
                 "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,260e6ec190766c5dfc59a76a02c8efa7",
                 "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,59bfba29741dcf51f5ef2589e50c746c",
                 "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,380cb01e89fac0f2eae9f5418933b8e5",
-                "llms-full.txt:md5,1792b71949bcf2f12932f821ad6a65b4",
-                "multiqc.log:md5,ba696955fa05c236285b69f1a9865ef1",
-                "multiqc.parquet:md5,23d3dcf948281acf8768dbf1acdaa20f",
+                "llms-full.txt:md5,674339aef7192e4c30fcecf94c6eaa4f",
+                "multiqc.log:md5,c589f2b905ff0145ceec8e6cc569167a",
+                "multiqc.parquet:md5,7da7a4b2c1be473544812ce0e1b0e1f7",
                 "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
-                "multiqc_data.json:md5,abd3e3e2d54224d63e0eeed29b3c248b",
+                "multiqc_data.json:md5,ab2e68551ebc09c27e85dae14179782b",
                 "multiqc_software_versions.txt:md5,659336ce694409cef38e2b36259e83ef",
                 "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
-                "multiqc_summary_stats.txt:md5,3451fe7e38bfb8b4bfe85da918c5027c",
-                "summary_stats.pdf:md5,db4afee798873f4a884f567f7c9c0373",
-                "summary_stats.png:md5,9faeff00bf2e3c1933ead4fe1f2a903f",
-                "summary_stats.svg:md5,98fa0cea92475f8318f6e3ed97e4b266",
-                "multiqc_report.html:md5,99e906096a2ed0ba6e7784d1e212b011",
+                "multiqc_summary_stats.txt:md5,f1f6b6363d84644e9aa73f802a2b4ad2",
+                "summary_stats.pdf:md5,97d7193a531f3a2d149bd8ee049ab6ac",
+                "summary_stats.png:md5,abec7e0524fb372298943c072bbc3f93",
+                "summary_stats.svg:md5,bfb094bd0bffbac3ebf217ed3b805c6e",
+                "multiqc_report.html:md5,4a523ac96700aac99201876cfc284388",
                 "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
                 "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
                 "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
                 "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
                 "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
                 "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html:md5,1e7af46c3224697cfe2bf3b96aa524c6",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html:md5,64715692dea284bb8deb2586de138b57",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html:md5,810a98ceb1fcdb803da9b0dd8f111f46",
                 "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html:md5,0786510d9931106e5415934317c8c2e9"
             ]
         ],
@@ -121,6 +121,6 @@
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-11-06T12:59:24.474245641"
+        "timestamp": "2025-11-06T14:37:45.187647894"
     }
 }
\ No newline at end of file

From 3b88b647a19cdfc07114373cd8bfce0eacd557a1 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 14:55:21 +0100
Subject: [PATCH 30/58] Add tetss

---
 tests/nextflow.config | 12 ------------
 1 file changed, 12 deletions(-)

diff --git a/tests/nextflow.config b/tests/nextflow.config
index 2dfa8e55..87f02d95 100644
--- a/tests/nextflow.config
+++ b/tests/nextflow.config
@@ -18,16 +18,4 @@ process {
     }
 }
 
-// Impose same minimum Nextflow version as the pipeline for testing
-manifest {
-    nextflowVersion = '!>=25.04.2'
-}
-
-// Disable all Nextflow reporting options
-timeline { enabled = false }
-report   { enabled = false }
-trace    { enabled = false }
-dag      { enabled = false }
-
-
 aws.client.anonymous = true // fixes S3 access issues on self-hosted runners

From b6f8770c6a11bf1a249def834d150f6757c06688 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 15:04:14 +0100
Subject: [PATCH 31/58] Fix groovy merge function onComplete

---
 .../main.nf                                          | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index e60dcbb6..a6b9206c 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -722,6 +722,18 @@ def parseVersions(String filePath) {
 
 def merge_summary_and_traces(summary_file, trace_dir_path, versions_path, outFileName, shinyOutFileName) {
 
+    // If summary file does not exist, return and log a warning
+    if(!new File(summary_file).exists()){
+        log.warn "Summary file ${summary_file} does not exist. Skipping merge with trace data."
+        return
+    }
+
+    // If trace directory does not exist, return and log a warning
+    if(!new File(trace_dir_path).exists()){
+        log.warn "Trace directory ${trace_dir_path} does not exist. Skipping merge with summary data."
+        return
+    }
+
     // -------------------
     // TRACE FILE
     // -------------------

From e7bb875aee6a1ef5ec51b1e05fc99220a73916b7 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 15:07:50 +0100
Subject: [PATCH 32/58] Fix groovy merge function onComplete

---
 .../utils_nfcore_multiplesequencealign_pipeline/main.nf     | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index a6b9206c..ff944f33 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -725,13 +725,13 @@ def merge_summary_and_traces(summary_file, trace_dir_path, versions_path, outFil
     // If summary file does not exist, return and log a warning
     if(!new File(summary_file).exists()){
         log.warn "Summary file ${summary_file} does not exist. Skipping merge with trace data."
-        return
+        return []
     }
 
     // If trace directory does not exist, return and log a warning
     if(!new File(trace_dir_path).exists()){
         log.warn "Trace directory ${trace_dir_path} does not exist. Skipping merge with summary data."
-        return
+        return []
     }
 
     // -------------------
@@ -749,7 +749,7 @@ def merge_summary_and_traces(summary_file, trace_dir_path, versions_path, outFil
     // if summary file does not exist, return
     if (!new File(summary_file).exists()) {
         log.warn "Summary file ${summary_file} does not exist. Skipping merge with trace data."
-        return
+        return []
     }
 
     // Parse the summary data (scientific accuracy file: SP, TC etc.)

From 0d1708b9eaa546259c55f39b4311f38b5730b4a0 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 15:23:32 +0100
Subject: [PATCH 33/58] Fix groovy merge function onComplete

---
 .../main.nf                                            | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index ff944f33..0226eac5 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -734,6 +734,11 @@ def merge_summary_and_traces(summary_file, trace_dir_path, versions_path, outFil
         return []
     }
 
+    if(!new File(versions_path).exists()){
+        log.warn "Versions file ${versions_path} does not exist. Skipping merge with summary data."
+        return []
+    }
+
     // -------------------
     // TRACE FILE
     // -------------------
@@ -746,11 +751,6 @@ def merge_summary_and_traces(summary_file, trace_dir_path, versions_path, outFil
     // -------------------
     // SUMMARY FILE
     // -------------------
-    // if summary file does not exist, return
-    if (!new File(summary_file).exists()) {
-        log.warn "Summary file ${summary_file} does not exist. Skipping merge with trace data."
-        return []
-    }
 
     // Parse the summary data (scientific accuracy file: SP, TC etc.)
     def data = parseCsv(new File(summary_file).readLines().collect { it.replaceAll("\t", ",") }.join("\n"))

From 21641522fcd6019e7292c385eefc688372e3eb1c Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 15:53:10 +0100
Subject: [PATCH 34/58] Fix groovy merge function onComplete

---
 .../utils_nfcore_multiplesequencealign_pipeline/main.nf     | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index 0226eac5..9fb66150 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -427,7 +427,7 @@ def keepKeysFromArrayList(arrayList, keysToKeep) {
  * @throws IllegalArgumentException if the time string is not in the correct format.
  */
 def convertTime(String timeStr) {
-    def pattern = /((?<hours>\d+(\.\d+)?)h)?\s*((?<minutes>\d+(\.\d+)?)m)?\s*((?<seconds>\d+(\.\d+)?)s)?\s*((?<milliseconds>\d+(\.\d+)?)ms)?/
+    def pattern = /((?<hours>\d+(\.\d+)?)h)?\s*((?<minutes>\d+(\.\d+)?)m)?\s*((?<seconds>\d+(\.\d+)?)s)?\s*((?<milliseconds>\d+(\.\d+)?)ms)?/    
     def matcher = timeStr.trim() =~ pattern
 
     if (!matcher.matches()) {
@@ -820,6 +820,10 @@ import groovy.text.SimpleTemplateEngine
 class Utils {
 
     public static cleanArgs(argString) {
+        // If argString is null, return "default"
+        if(argString == null){
+            return "default"
+        }
 
         def cleanArgs = argString.toString().trim().replace("  ", " ").replace(" ", "_").replaceAll("==", "_").replaceAll("\\s+", "")
         // if clearnArgs is empty, return ""

From c0adc08b8df3332adf2496783c541159f2e3420b Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 16:24:42 +0100
Subject: [PATCH 35/58] add nf test ignore

---
 .nf-test.log               | 36 ++++++++++++++++++------------------
 tests/.nftignore           |  2 ++
 tests/default.nf.test.snap | 26 +++++++++++++-------------
 3 files changed, 33 insertions(+), 31 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index 673f4423..3ebf85a2 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,18 +1,18 @@
-Nov-06 14:36:27.548 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-06 14:36:27.567 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/test_pdb.nf.test, --update-snapshot, --profile, +docker]
-Nov-06 14:36:28.603 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-06 14:36:28.604 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-06 14:36:29.384 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 60 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.253 sec
-Nov-06 14:36:29.385 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-06 14:36:29.385 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test]
-Nov-06 14:36:29.599 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-06 14:36:29.600 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-06 14:36:29.600 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test'.
-Nov-06 14:36:29.600 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '594f046f: -profile test_pdb'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-06 14:37:44.933 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test.snap'
-Nov-06 14:37:45.187 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_pdb' do not match. Update snapshots flag set.
-Nov-06 14:37:45.187 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_pdb'
-Nov-06 14:37:45.426 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_pdb.nf.test.snap'
-Nov-06 14:37:45.427 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '594f046f: -profile test_pdb' finished. status: PASSED
-Nov-06 14:37:45.430 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-06 14:37:45.434 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-06 16:06:42.056 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-06 16:06:42.076 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-06 16:06:43.147 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-06 16:06:43.149 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-06 16:06:44.175 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 60 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.255 sec
+Nov-06 16:06:44.180 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-06 16:06:44.180 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-06 16:06:44.689 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-06 16:06:44.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-06 16:06:44.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-06 16:06:44.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-06 16:08:37.955 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-06 16:08:38.172 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
+Nov-06 16:08:38.172 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
+Nov-06 16:08:38.364 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-06 16:08:38.365 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-06 16:08:38.367 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-06 16:08:38.370 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/.nftignore b/tests/.nftignore
index e128a128..f52eef75 100644
--- a/tests/.nftignore
+++ b/tests/.nftignore
@@ -10,3 +10,5 @@ multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
 multiqc/multiqc_report.html
 fastqc/*_fastqc.{html,zip}
 pipeline_info/*.{html,json,txt,yml}
+evaluation/complete_summary_eval.csv
+stats/complete_summary_stats.csv
\ No newline at end of file
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 97249780..f5d814dc 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -196,7 +196,7 @@
                 "toxin-ref_CONSENSUS.aln.gz:md5,62ea7ad0d5d2b0527112c83c7d882160",
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,d24caa61ecbe107f1f60d70c4de58263",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,326de89fce0fc44b83ce026190449e74",
-                "complete_summary_eval.csv:md5,75be98fd438567ec76b776c04c68f862",
+                "complete_summary_eval.csv:md5,e3a994608cb2a319117af208d8cc42b8",
                 "seatoxin-ref_CONSENSUS.aln.html:md5,f1804566c5282a4b56dfe4661d802086",
                 "seatoxin-ref_CONSENSUS.aln.sp_ascii:md5,9b4c5540ef94da99b7b35e0670a95f2f",
                 "toxin-ref_CONSENSUS.aln.html:md5,fd506d7063ec61a2eb54c25da1328a57",
@@ -216,27 +216,27 @@
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
-                "llms-full.txt:md5,10150b1ed2fb0d596cbcf24086c65506",
-                "multiqc.log:md5,eea5832fe7b52601b2d18868070f4e95",
-                "multiqc.parquet:md5,9bc7e74c5389414d3d1e66fc09763280",
+                "llms-full.txt:md5,8ae796eb11e8e85fe1502d1c6266e0bf",
+                "multiqc.log:md5,e2a5c17cfd8a0100acb1228b1a0b76f6",
+                "multiqc.parquet:md5,b3dbb9ed8a25a3a5530f03a2b514886a",
                 "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
-                "multiqc_data.json:md5,a977000a9c50efb46c35d8ea318aa553",
+                "multiqc_data.json:md5,1d3b32de9bfc217bbe0d9ff172bafbe0",
                 "multiqc_software_versions.txt:md5,8249ccbdf0a9b5dc9f979124882ca3db",
                 "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
-                "multiqc_summary_stats.txt:md5,b7ff8fe7a0479058665b6d9f217cb757",
-                "summary_stats.pdf:md5,cf6888bb072cfd7b84bd7d263bfd5492",
-                "summary_stats.png:md5,23b1537f305d30ced5ca3578778433da",
-                "summary_stats.svg:md5,51200a47bce4e8f2a888bb50deea1278",
-                "multiqc_report.html:md5,12d0e7a5c0dc3a29899542632c0421b5",
+                "multiqc_summary_stats.txt:md5,605bd059335ffc2289e0aafb007d6287",
+                "summary_stats.pdf:md5,ddd44b0bf8a8478348e9972ff23591e6",
+                "summary_stats.png:md5,3843f884f2f55bd82bcacb52dad3d36e",
+                "summary_stats.svg:md5,41311400cdd4dd988cb258c429906d0a",
+                "multiqc_report.html:md5,c9253734c0b43a4df7c63f346786dfcf",
                 "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
                 "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
                 "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
                 "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
                 "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
                 "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html:md5,0dbcb624692ca5238f776c0ee15e7f2d",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,f7d28fa32cb75aed8552370195513b76",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,4552760dbe951b4ec96c9261d8244f7b",
                 "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html:md5,a37c1ce23116b79688dafd6469664a8b",
-                "complete_summary_stats.csv:md5,35ed5236bf4eed9077ef00edab4dac23",
+                "complete_summary_stats.csv:md5,19cee5e76d1a601b967a2c8c672e3a69",
                 "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
                 "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
                 "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
@@ -250,6 +250,6 @@
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-11-06T12:57:43.900053043"
+        "timestamp": "2025-11-06T16:08:38.172360393"
     }
 }
\ No newline at end of file

From c44c20e74bd0a7387fbf2a441ddd64c9ba60019e Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Thu, 6 Nov 2025 16:28:28 +0100
Subject: [PATCH 36/58] add nf test ignore

---
 tests/.nftignore | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/.nftignore b/tests/.nftignore
index f52eef75..fff5268f 100644
--- a/tests/.nftignore
+++ b/tests/.nftignore
@@ -11,4 +11,4 @@ multiqc/multiqc_report.html
 fastqc/*_fastqc.{html,zip}
 pipeline_info/*.{html,json,txt,yml}
 evaluation/complete_summary_eval.csv
-stats/complete_summary_stats.csv
\ No newline at end of file
+stats/complete_summary_stats.csv

From f80d53741119ed82d895ed7d632b7204cb395eac Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 11:48:09 +0100
Subject: [PATCH 37/58] Fix precommit

---
 .../local/utils_nfcore_multiplesequencealign_pipeline/main.nf   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index 9fb66150..602d0a6a 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -427,7 +427,7 @@ def keepKeysFromArrayList(arrayList, keysToKeep) {
  * @throws IllegalArgumentException if the time string is not in the correct format.
  */
 def convertTime(String timeStr) {
-    def pattern = /((?<hours>\d+(\.\d+)?)h)?\s*((?<minutes>\d+(\.\d+)?)m)?\s*((?<seconds>\d+(\.\d+)?)s)?\s*((?<milliseconds>\d+(\.\d+)?)ms)?/    
+    def pattern = /((?<hours>\d+(\.\d+)?)h)?\s*((?<minutes>\d+(\.\d+)?)m)?\s*((?<seconds>\d+(\.\d+)?)s)?\s*((?<milliseconds>\d+(\.\d+)?)ms)?/
     def matcher = timeStr.trim() =~ pattern
 
     if (!matcher.matches()) {

From 17d16ce7c68e8dca7a025f08a709b676494eca33 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 12:30:33 +0100
Subject: [PATCH 38/58] Test removing tests

---
 tests/test_conda.nf.test         |  39 ---
 tests/test_conda.nf.test.snap    | 505 -------------------------------
 tests/test_no_sheet.nf.test      |  38 ---
 tests/test_no_sheet.nf.test.snap |  40 ---
 tests/test_pdb.nf.test           |  39 ---
 tests/test_pdb.nf.test.snap      | 126 --------
 6 files changed, 787 deletions(-)
 delete mode 100644 tests/test_conda.nf.test
 delete mode 100644 tests/test_conda.nf.test.snap
 delete mode 100644 tests/test_no_sheet.nf.test
 delete mode 100644 tests/test_no_sheet.nf.test.snap
 delete mode 100644 tests/test_pdb.nf.test
 delete mode 100644 tests/test_pdb.nf.test.snap

diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
deleted file mode 100644
index a34edd63..00000000
--- a/tests/test_conda.nf.test
+++ /dev/null
@@ -1,39 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_conda"
-    profile "test_conda"
-
-
-    test("-profile test_conda") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_conda.nf.test.snap b/tests/test_conda.nf.test.snap
deleted file mode 100644
index f503205f..00000000
--- a/tests/test_conda.nf.test.snap
+++ /dev/null
@@ -1,505 +0,0 @@
-{
-    "-profile test_conda": {
-        "content": [
-            271,
-            {
-                "CALCULATE_SEQSTATS": {
-                    "python": "3.11.0"
-                },
-                "CALC_GAPS": {
-                    "awk": "1.3.4 20200120"
-                },
-                "CLUSTALO_ALIGN": {
-                    "clustalo": "1.2.4",
-                    "pigz": "2.8)"
-                },
-                "CLUSTALO_GUIDETREE": {
-                    "clustalo": "1.2.4"
-                },
-                "CONCAT_GAPS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_PLDDTS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SEQSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SIMSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SP": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TC": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TCS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONSENSUS": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "EXTRACT_PLDDT": {
-                    "awk": "1.3.4 20200120"
-                },
-                "FAMSA_ALIGN": {
-                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
-                },
-                "FAMSA_GUIDETREE": {
-                    "famsa": "2.2.2- (2022-10-09)"
-                },
-                "FASTAVALIDATOR": {
-                    "py_fasta_validator": 0.6
-                },
-                "FOLDMASON_ALIGN": {
-                    "foldmason": "2.7bd21ed",
-                    "pigz": "2.8)"
-                },
-                "MAFFT_ALIGN": {
-                    "mafft": 7.52,
-                    "pigz": "2.8)"
-                },
-                "MAFFT_GUIDETREE": {
-                    "mafft": 7.525
-                },
-                "MAGUS_ALIGN": {
-                    "MAGUS": "0.2.0",
-                    "pigz": "2.8)"
-                },
-                "MERGE_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MTMALIGN_ALIGN": {
-                    "mTM-align": 20220104,
-                    "pigz": "2.8)"
-                },
-                "MUSCLE5_ALIGN": {
-                    "muscle": 5.1,
-                    "pigz": "2.8)"
-                },
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-                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,da89f674513336ed9f5c968d2fe9158a",
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-                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
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-                "multiqc.parquet:md5,b041dcef03de2272b24f57caf7b2c32c",
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-                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
-                "multiqc_summary_stats.txt:md5,246ab0c33f648e22914088163574fb4c",
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-                "multiqc_report.html:md5,716fbe1ac15de8f462d4d93eb70f7e18",
-                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
-                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
-                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
-                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
-                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
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-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default.html:md5,a688e78fa08ae081b3962aac55f4bd4a",
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-                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default.html:md5,3f6c2b556317a32c5815936e9b358d72",
-                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default.html:md5,ea9f4828a5be8dfda94e5c075b1c979f",
-                "complete_summary_stats.csv:md5,19cee5e76d1a601b967a2c8c672e3a69",
-                "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
-                "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
-                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
-                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
-                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
-                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
-                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
-                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
-                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
-                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
-                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-06T13:20:05.771062196"
-    }
-}
\ No newline at end of file
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
deleted file mode 100644
index 50ce9516..00000000
--- a/tests/test_no_sheet.nf.test
+++ /dev/null
@@ -1,38 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_no_sheet"
-    profile "test_no_sheet"
-
-    test("-profile test_no_sheet - stub") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_no_sheet.nf.test.snap b/tests/test_no_sheet.nf.test.snap
deleted file mode 100644
index a53079a7..00000000
--- a/tests/test_no_sheet.nf.test.snap
+++ /dev/null
@@ -1,40 +0,0 @@
-{
-    "-profile test_no_sheet - stub": {
-        "content": [
-            3,
-            {
-                "FAMSA_ALIGN": {
-                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
-                },
-                "FAMSA_GUIDETREE": {
-                    "famsa": "2.2.2- (2022-10-09)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/setoxin-ref",
-                "alignments/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz",
-                "pipeline_info",
-                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
-                "trees",
-                "trees/setoxin-ref",
-                "trees/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd"
-            ],
-            [
-                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz:md5,9394e09dd7f576da794a74de60327324",
-                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-06T13:00:00.803514333"
-    }
-}
\ No newline at end of file
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
deleted file mode 100644
index fdd01640..00000000
--- a/tests/test_pdb.nf.test
+++ /dev/null
@@ -1,39 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_pdb"
-    profile "test_pdb"
-
-
-    test("-profile test_pdb") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_pdb.nf.test.snap b/tests/test_pdb.nf.test.snap
deleted file mode 100644
index 01867fd0..00000000
--- a/tests/test_pdb.nf.test.snap
+++ /dev/null
@@ -1,126 +0,0 @@
-{
-    "-profile test_pdb": {
-        "content": [
-            30,
-            {
-                "FASTAVALIDATOR": {
-                    "py_fasta_validator": 0.6
-                },
-                "FOLDMASON_ALIGN": {
-                    "foldmason": "2.7bd21ed",
-                    "pigz": "2.8)"
-                },
-                "MERGE_STATS_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MTMALIGN_ALIGN": {
-                    "mTM-align": 20220104,
-                    "pigz": "2.8)"
-                },
-                "PARSE_IRMSD": {
-                    "python": "3.11.0"
-                },
-                "PIGZ_COMPRESS": {
-                    "pigz": 2.8
-                },
-                "PREPARE_SHINY": {
-                    "bash": "5.1.16 3"
-                },
-                "TCOFFEE3D_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_EXTRACTFROMPDB": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_IRMSD": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/seatoxin-ref",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
-                "evaluation",
-                "evaluation/tcoffee_irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
-                "pipeline_info",
-                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
-                "reports",
-                "reports/multiqc",
-                "reports/multiqc/multiqc_data",
-                "reports/multiqc/multiqc_data/llms-full.txt",
-                "reports/multiqc/multiqc_data/multiqc.log",
-                "reports/multiqc/multiqc_data/multiqc.parquet",
-                "reports/multiqc/multiqc_data/multiqc_citations.txt",
-                "reports/multiqc/multiqc_data/multiqc_data.json",
-                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
-                "reports/multiqc/multiqc_data/multiqc_sources.txt",
-                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
-                "reports/multiqc/multiqc_plots",
-                "reports/multiqc/multiqc_plots/pdf",
-                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
-                "reports/multiqc/multiqc_plots/png",
-                "reports/multiqc/multiqc_plots/png/summary_stats.png",
-                "reports/multiqc/multiqc_plots/svg",
-                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
-                "reports/multiqc/multiqc_report.html",
-                "reports/shiny_app",
-                "reports/shiny_app/run.sh",
-                "reports/shiny_app/shiny_app.py",
-                "reports/shiny_app/static",
-                "reports/shiny_app/static/bootstrap.min.css",
-                "reports/shiny_app/static/favicon.ico",
-                "reports/shiny_app/static/style.css",
-                "reports/visualization",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html"
-            ],
-            [
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz:md5,bfec7de9e22fb892f573415feab92188",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz:md5,61a0244fb011d129017b7be3e35e72b2",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz:md5,595c2526ce7637b4630837a607914151",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,260e6ec190766c5dfc59a76a02c8efa7",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,59bfba29741dcf51f5ef2589e50c746c",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,380cb01e89fac0f2eae9f5418933b8e5",
-                "llms-full.txt:md5,674339aef7192e4c30fcecf94c6eaa4f",
-                "multiqc.log:md5,c589f2b905ff0145ceec8e6cc569167a",
-                "multiqc.parquet:md5,7da7a4b2c1be473544812ce0e1b0e1f7",
-                "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
-                "multiqc_data.json:md5,ab2e68551ebc09c27e85dae14179782b",
-                "multiqc_software_versions.txt:md5,659336ce694409cef38e2b36259e83ef",
-                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
-                "multiqc_summary_stats.txt:md5,f1f6b6363d84644e9aa73f802a2b4ad2",
-                "summary_stats.pdf:md5,97d7193a531f3a2d149bd8ee049ab6ac",
-                "summary_stats.png:md5,abec7e0524fb372298943c072bbc3f93",
-                "summary_stats.svg:md5,bfb094bd0bffbac3ebf217ed3b805c6e",
-                "multiqc_report.html:md5,4a523ac96700aac99201876cfc284388",
-                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
-                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
-                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
-                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
-                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html:md5,1e7af46c3224697cfe2bf3b96aa524c6",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html:md5,810a98ceb1fcdb803da9b0dd8f111f46",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html:md5,0786510d9931106e5415934317c8c2e9"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-06T14:37:45.187647894"
-    }
-}
\ No newline at end of file

From fbdd08183652969a106457cd84180b02c9dd4f75 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 12:43:39 +0100
Subject: [PATCH 39/58] Add trim check

---
 .../local/utils_nfcore_multiplesequencealign_pipeline/main.nf | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
index 602d0a6a..96448651 100644
--- a/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
+++ b/subworkflows/local/utils_nfcore_multiplesequencealign_pipeline/main.nf
@@ -428,6 +428,10 @@ def keepKeysFromArrayList(arrayList, keysToKeep) {
  */
 def convertTime(String timeStr) {
     def pattern = /((?<hours>\d+(\.\d+)?)h)?\s*((?<minutes>\d+(\.\d+)?)m)?\s*((?<seconds>\d+(\.\d+)?)s)?\s*((?<milliseconds>\d+(\.\d+)?)ms)?/
+    if (!timeStr) {
+        return "not available"
+    }
+
     def matcher = timeStr.trim() =~ pattern
 
     if (!matcher.matches()) {

From f6212303b391836c65bad6c20ba1f27c81aed9e5 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 13:59:34 +0100
Subject: [PATCH 40/58] Add new test

---
 .nf-test.log               | 36 ++++++++++++++++++------------------
 tests/default.nf.test.snap | 29 ++++++++++++++++-------------
 2 files changed, 34 insertions(+), 31 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index 3ebf85a2..6d527357 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,18 +1,18 @@
-Nov-06 16:06:42.056 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-06 16:06:42.076 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-06 16:06:43.147 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-06 16:06:43.149 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-06 16:06:44.175 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 60 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.255 sec
-Nov-06 16:06:44.180 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-06 16:06:44.180 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-06 16:06:44.689 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-06 16:06:44.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-06 16:06:44.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-06 16:06:44.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-06 16:08:37.955 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-06 16:08:38.172 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
-Nov-06 16:08:38.172 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
-Nov-06 16:08:38.364 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-06 16:08:38.365 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-06 16:08:38.367 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-06 16:08:38.370 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-10 13:09:45.924 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-10 13:09:45.946 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-10 13:09:47.027 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-10 13:09:47.028 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-10 13:09:47.852 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.29 sec
+Nov-10 13:09:47.864 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-10 13:09:47.865 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-10 13:09:48.135 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-10 13:09:48.137 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-10 13:09:48.137 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-10 13:09:48.137 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-10 13:11:09.143 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 13:11:09.288 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
+Nov-10 13:11:09.288 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
+Nov-10 13:11:09.424 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 13:11:09.425 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-10 13:11:09.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-10 13:11:09.429 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index f5d814dc..879cc54a 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -159,6 +159,7 @@
                 "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
                 "reports/multiqc/multiqc_report.html",
                 "reports/shiny_app",
+                "reports/shiny_app/complete_summary_stats_eval_times.csv",
                 "reports/shiny_app/run.sh",
                 "reports/shiny_app/shiny_app.py",
                 "reports/shiny_app/static",
@@ -181,6 +182,8 @@
                 "stats/structures",
                 "stats/structures/plddt",
                 "stats/structures/plddt/seatoxin-ref_full_plddt.csv",
+                "summary",
+                "summary/complete_summary_stats_eval_times.csv",
                 "trees",
                 "trees/seatoxin-ref",
                 "trees/seatoxin-ref/seatoxin-ref_FAMSA-args-default.dnd",
@@ -196,7 +199,6 @@
                 "toxin-ref_CONSENSUS.aln.gz:md5,62ea7ad0d5d2b0527112c83c7d882160",
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,d24caa61ecbe107f1f60d70c4de58263",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,326de89fce0fc44b83ce026190449e74",
-                "complete_summary_eval.csv:md5,e3a994608cb2a319117af208d8cc42b8",
                 "seatoxin-ref_CONSENSUS.aln.html:md5,f1804566c5282a4b56dfe4661d802086",
                 "seatoxin-ref_CONSENSUS.aln.sp_ascii:md5,9b4c5540ef94da99b7b35e0670a95f2f",
                 "toxin-ref_CONSENSUS.aln.html:md5,fd506d7063ec61a2eb54c25da1328a57",
@@ -216,32 +218,33 @@
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
-                "llms-full.txt:md5,8ae796eb11e8e85fe1502d1c6266e0bf",
-                "multiqc.log:md5,e2a5c17cfd8a0100acb1228b1a0b76f6",
-                "multiqc.parquet:md5,b3dbb9ed8a25a3a5530f03a2b514886a",
+                "llms-full.txt:md5,f7effb51be0460ef997f4e2f0ff848af",
+                "multiqc.log:md5,d45269b516c5dd4a9db3ca0a0652e1f3",
+                "multiqc.parquet:md5,d1ed42cfb2b0e0c4fae413a9f78ab8ee",
                 "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
-                "multiqc_data.json:md5,1d3b32de9bfc217bbe0d9ff172bafbe0",
+                "multiqc_data.json:md5,a068805e390b80d6cadbb4903ad3372a",
                 "multiqc_software_versions.txt:md5,8249ccbdf0a9b5dc9f979124882ca3db",
                 "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
-                "multiqc_summary_stats.txt:md5,605bd059335ffc2289e0aafb007d6287",
-                "summary_stats.pdf:md5,ddd44b0bf8a8478348e9972ff23591e6",
-                "summary_stats.png:md5,3843f884f2f55bd82bcacb52dad3d36e",
-                "summary_stats.svg:md5,41311400cdd4dd988cb258c429906d0a",
-                "multiqc_report.html:md5,c9253734c0b43a4df7c63f346786dfcf",
+                "multiqc_summary_stats.txt:md5,86245956cfd548e9728c12d2e572f5f8",
+                "summary_stats.pdf:md5,255a0867549f7d67099c0b93643dad46",
+                "summary_stats.png:md5,23b1537f305d30ced5ca3578778433da",
+                "summary_stats.svg:md5,da64dd9383481352c8d0f5b85285ab7b",
+                "multiqc_report.html:md5,f3dee8e59a4e23a139a000eccd5be2c8",
+                "complete_summary_stats_eval_times.csv:md5,3fc7f345fec1135994bc7df5d196a41b",
                 "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
                 "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
                 "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
                 "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
                 "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
                 "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html:md5,0dbcb624692ca5238f776c0ee15e7f2d",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,4552760dbe951b4ec96c9261d8244f7b",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,fcd1db58967435a78b9d51acc344a636",
                 "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html:md5,a37c1ce23116b79688dafd6469664a8b",
-                "complete_summary_stats.csv:md5,19cee5e76d1a601b967a2c8c672e3a69",
                 "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
                 "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
                 "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
                 "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
                 "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
+                "complete_summary_stats_eval_times.csv:md5,3fc7f345fec1135994bc7df5d196a41b",
                 "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
                 "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009"
             ]
@@ -250,6 +253,6 @@
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-11-06T16:08:38.172360393"
+        "timestamp": "2025-11-10T13:11:09.288306499"
     }
 }
\ No newline at end of file

From 093b92f6de7640c9813962b902486796e65a5e1a Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 14:13:26 +0100
Subject: [PATCH 41/58] Add new test

---
 .nf-test.log               | 36 ++++++++++++++++++------------------
 tests/.nftignore           | 26 +++++++++++++-------------
 tests/default.nf.test.snap | 25 +++----------------------
 3 files changed, 34 insertions(+), 53 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index 6d527357..0869c9dc 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,18 +1,18 @@
-Nov-10 13:09:45.924 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-10 13:09:45.946 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-10 13:09:47.027 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-10 13:09:47.028 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-10 13:09:47.852 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.29 sec
-Nov-10 13:09:47.864 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-10 13:09:47.865 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-10 13:09:48.135 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-10 13:09:48.137 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-10 13:09:48.137 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-10 13:09:48.137 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-10 13:11:09.143 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 13:11:09.288 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
-Nov-10 13:11:09.288 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
-Nov-10 13:11:09.424 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 13:11:09.425 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-10 13:11:09.426 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-10 13:11:09.429 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-10 14:10:45.687 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-10 14:10:45.727 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-10 14:10:46.627 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-10 14:10:46.629 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-10 14:10:47.301 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.178 sec
+Nov-10 14:10:47.303 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-10 14:10:47.304 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-10 14:10:47.488 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-10 14:10:47.489 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-10 14:10:47.489 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-10 14:10:47.489 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-10 14:12:15.427 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 14:12:15.541 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
+Nov-10 14:12:15.541 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
+Nov-10 14:12:15.574 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 14:12:15.575 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-10 14:12:15.577 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-10 14:12:15.580 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/.nftignore b/tests/.nftignore
index fff5268f..f3ab5764 100644
--- a/tests/.nftignore
+++ b/tests/.nftignore
@@ -1,14 +1,14 @@
 .DS_Store
-multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt
-multiqc/multiqc_data/multiqc.parquet
-multiqc/multiqc_data/multiqc.log
-multiqc/multiqc_data/multiqc_data.json
-multiqc/multiqc_data/multiqc_sources.txt
-multiqc/multiqc_data/multiqc_software_versions.txt
-multiqc/multiqc_data/llms-full.txt
-multiqc/multiqc_plots/{svg,pdf,png}/*.{svg,pdf,png}
-multiqc/multiqc_report.html
-fastqc/*_fastqc.{html,zip}
-pipeline_info/*.{html,json,txt,yml}
-evaluation/complete_summary_eval.csv
-stats/complete_summary_stats.csv
+**/fastqc_top_overrepresented_sequences_table.txt
+**/multiqc.parquet
+**/multiqc.log
+**/multiqc_data.json
+**/multiqc_sources.txt
+**/multiqc_software_versions.txt
+**/llms-full.txt
+**/*.{svg,pdf,png}
+**/multiqc_report.html
+**/*_fastqc.{html,zip}
+**/*.{html,json,txt,yml}
+**/complete_summary_eval.csv
+**/complete_summary_stats.csv
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 879cc54a..8b8ccae6 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -199,9 +199,7 @@
                 "toxin-ref_CONSENSUS.aln.gz:md5,62ea7ad0d5d2b0527112c83c7d882160",
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz:md5,d24caa61ecbe107f1f60d70c4de58263",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default.aln.gz:md5,326de89fce0fc44b83ce026190449e74",
-                "seatoxin-ref_CONSENSUS.aln.html:md5,f1804566c5282a4b56dfe4661d802086",
                 "seatoxin-ref_CONSENSUS.aln.sp_ascii:md5,9b4c5540ef94da99b7b35e0670a95f2f",
-                "toxin-ref_CONSENSUS.aln.html:md5,fd506d7063ec61a2eb54c25da1328a57",
                 "toxin-ref_CONSENSUS.aln.sp_ascii:md5,3e6c0fbf406f6453ab1fc2015e1320f4",
                 "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd:md5,c10111ab2b6eab2454db77f526fd3d6b",
                 "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd:md5,68b1bc3bbbe887161207fb530fffc30a",
@@ -218,33 +216,16 @@
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
-                "llms-full.txt:md5,f7effb51be0460ef997f4e2f0ff848af",
-                "multiqc.log:md5,d45269b516c5dd4a9db3ca0a0652e1f3",
-                "multiqc.parquet:md5,d1ed42cfb2b0e0c4fae413a9f78ab8ee",
-                "multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
-                "multiqc_data.json:md5,a068805e390b80d6cadbb4903ad3372a",
-                "multiqc_software_versions.txt:md5,8249ccbdf0a9b5dc9f979124882ca3db",
-                "multiqc_sources.txt:md5,d2a044df39ce3c6abe5cdc2d67473490",
-                "multiqc_summary_stats.txt:md5,86245956cfd548e9728c12d2e572f5f8",
-                "summary_stats.pdf:md5,255a0867549f7d67099c0b93643dad46",
-                "summary_stats.png:md5,23b1537f305d30ced5ca3578778433da",
-                "summary_stats.svg:md5,da64dd9383481352c8d0f5b85285ab7b",
-                "multiqc_report.html:md5,f3dee8e59a4e23a139a000eccd5be2c8",
-                "complete_summary_stats_eval_times.csv:md5,3fc7f345fec1135994bc7df5d196a41b",
+                "complete_summary_stats_eval_times.csv:md5,0fada6286b604d11f7e294aa4a86c2c4",
                 "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
                 "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
                 "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
                 "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
                 "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html:md5,0dbcb624692ca5238f776c0ee15e7f2d",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html:md5,fcd1db58967435a78b9d51acc344a636",
-                "seatoxin-ref_FAMSA-args-default_FAMSA-args-default.html:md5,a37c1ce23116b79688dafd6469664a8b",
-                "seatoxin-ref.txt:md5,fdaa411d62bd66b5c30b21fd5b85a914",
-                "toxin-ref.txt:md5,a03aa486e0949d572972378a21dff28b",
                 "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
                 "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
                 "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
-                "complete_summary_stats_eval_times.csv:md5,3fc7f345fec1135994bc7df5d196a41b",
+                "complete_summary_stats_eval_times.csv:md5,0fada6286b604d11f7e294aa4a86c2c4",
                 "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
                 "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009"
             ]
@@ -253,6 +234,6 @@
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-11-10T13:11:09.288306499"
+        "timestamp": "2025-11-10T14:12:15.541450074"
     }
 }
\ No newline at end of file

From 70aa7cc0937d07018ef969667962a8ecb52790d3 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 14:26:44 +0100
Subject: [PATCH 42/58] Add new test

---
 .nf-test.log               | 36 ++++++++++++++++++------------------
 tests/.nftignore           |  1 +
 tests/default.nf.test.snap |  5 ++---
 3 files changed, 21 insertions(+), 21 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index 0869c9dc..19525f36 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,18 +1,18 @@
-Nov-10 14:10:45.687 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-10 14:10:45.727 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-10 14:10:46.627 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-10 14:10:46.629 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-10 14:10:47.301 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.178 sec
-Nov-10 14:10:47.303 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-10 14:10:47.304 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-10 14:10:47.488 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-10 14:10:47.489 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-10 14:10:47.489 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-10 14:10:47.489 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-10 14:12:15.427 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 14:12:15.541 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
-Nov-10 14:12:15.541 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
-Nov-10 14:12:15.574 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 14:12:15.575 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-10 14:12:15.577 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-10 14:12:15.580 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-10 14:24:40.864 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-10 14:24:40.894 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-10 14:24:41.861 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-10 14:24:41.863 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-10 14:24:42.506 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.176 sec
+Nov-10 14:24:42.507 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-10 14:24:42.507 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-10 14:24:42.691 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-10 14:24:42.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-10 14:24:42.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-10 14:24:42.692 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-10 14:26:17.833 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 14:26:17.902 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
+Nov-10 14:26:17.902 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
+Nov-10 14:26:17.933 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 14:26:17.934 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-10 14:26:17.938 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-10 14:26:17.941 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/.nftignore b/tests/.nftignore
index f3ab5764..41f4442c 100644
--- a/tests/.nftignore
+++ b/tests/.nftignore
@@ -12,3 +12,4 @@
 **/*.{html,json,txt,yml}
 **/complete_summary_eval.csv
 **/complete_summary_stats.csv
+*/complete_summary_stats_eval_times.csv
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 8b8ccae6..9d9b7836 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -216,7 +216,7 @@
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
-                "complete_summary_stats_eval_times.csv:md5,0fada6286b604d11f7e294aa4a86c2c4",
+                "complete_summary_stats_eval_times.csv:md5,7cb3524f8ed9eb9e697169435d616219",
                 "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
                 "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
                 "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
@@ -225,7 +225,6 @@
                 "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
                 "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
                 "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
-                "complete_summary_stats_eval_times.csv:md5,0fada6286b604d11f7e294aa4a86c2c4",
                 "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
                 "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009"
             ]
@@ -234,6 +233,6 @@
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-11-10T14:12:15.541450074"
+        "timestamp": "2025-11-10T14:26:17.902329058"
     }
 }
\ No newline at end of file

From eaeb5e00933a3e93142c2ebc6e5da156a9fa32ac Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 14:36:24 +0100
Subject: [PATCH 43/58] Add new test

---
 .nf-test.log               | 36 ++++++++++++++++++------------------
 tests/.nftignore           |  2 +-
 tests/default.nf.test.snap |  3 +--
 3 files changed, 20 insertions(+), 21 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index 19525f36..ccd054e9 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,18 +1,18 @@
-Nov-10 14:24:40.864 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-10 14:24:40.894 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-10 14:24:41.861 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-10 14:24:41.863 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-10 14:24:42.506 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.176 sec
-Nov-10 14:24:42.507 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-10 14:24:42.507 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-10 14:24:42.691 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-10 14:24:42.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-10 14:24:42.691 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-10 14:24:42.692 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-10 14:26:17.833 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 14:26:17.902 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
-Nov-10 14:26:17.902 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
-Nov-10 14:26:17.933 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 14:26:17.934 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-10 14:26:17.938 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-10 14:26:17.941 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-10 14:34:41.964 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-10 14:34:41.980 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-10 14:34:42.908 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-10 14:34:42.910 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-10 14:34:43.602 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.239 sec
+Nov-10 14:34:43.603 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-10 14:34:43.603 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-10 14:34:43.766 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-10 14:34:43.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-10 14:34:43.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-10 14:34:43.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-10 14:36:18.496 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 14:36:18.562 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
+Nov-10 14:36:18.562 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
+Nov-10 14:36:18.590 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 14:36:18.591 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-10 14:36:18.594 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-10 14:36:18.597 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/.nftignore b/tests/.nftignore
index 41f4442c..81610b72 100644
--- a/tests/.nftignore
+++ b/tests/.nftignore
@@ -12,4 +12,4 @@
 **/*.{html,json,txt,yml}
 **/complete_summary_eval.csv
 **/complete_summary_stats.csv
-*/complete_summary_stats_eval_times.csv
+**/complete_summary_stats_eval_times.csv
diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
index 9d9b7836..9dfc4046 100644
--- a/tests/default.nf.test.snap
+++ b/tests/default.nf.test.snap
@@ -216,7 +216,6 @@
                 "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.scores:md5,08496e87d5bd101d5cb89546ce6db937",
                 "toxin-ref_FAMSA-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
-                "complete_summary_stats_eval_times.csv:md5,7cb3524f8ed9eb9e697169435d616219",
                 "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
                 "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
                 "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
@@ -233,6 +232,6 @@
             "nf-test": "0.9.3",
             "nextflow": "25.10.0"
         },
-        "timestamp": "2025-11-10T14:26:17.902329058"
+        "timestamp": "2025-11-10T14:36:18.562534926"
     }
 }
\ No newline at end of file

From 82303152e019f98c02b710b2615d468e66379315 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 14:47:51 +0100
Subject: [PATCH 44/58] Add new test

---
 .nf-test.log                     |  34 ++-
 tests/test_conda.nf.test         |  39 +++
 tests/test_conda.nf.test.snap    | 473 +++++++++++++++++++++++++++++++
 tests/test_no_sheet.nf.test      |  38 +++
 tests/test_no_sheet.nf.test.snap |  40 +++
 tests/test_pdb.nf.test           |  39 +++
 tests/test_pdb.nf.test.snap      | 114 ++++++++
 7 files changed, 759 insertions(+), 18 deletions(-)
 create mode 100644 tests/test_conda.nf.test
 create mode 100644 tests/test_conda.nf.test.snap
 create mode 100644 tests/test_no_sheet.nf.test
 create mode 100644 tests/test_no_sheet.nf.test.snap
 create mode 100644 tests/test_pdb.nf.test
 create mode 100644 tests/test_pdb.nf.test.snap

diff --git a/.nf-test.log b/.nf-test.log
index ccd054e9..e24b490f 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,18 +1,16 @@
-Nov-10 14:34:41.964 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-10 14:34:41.980 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-10 14:34:42.908 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-10 14:34:42.910 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-10 14:34:43.602 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.239 sec
-Nov-10 14:34:43.603 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-10 14:34:43.603 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-10 14:34:43.766 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-10 14:34:43.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-10 14:34:43.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-10 14:34:43.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-10 14:36:18.496 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 14:36:18.562 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' do not match. Update snapshots flag set.
-Nov-10 14:36:18.562 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Updated snapshot '-profile test_tiny'
-Nov-10 14:36:18.590 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Wrote snapshots to file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 14:36:18.591 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-10 14:36:18.594 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-10 14:36:18.597 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-10 14:46:56.235 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-10 14:46:56.293 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/test_no_sheet.nf.test, --update-snapshot, --profile, +docker]
+Nov-10 14:46:57.950 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-10 14:46:57.953 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-10 14:47:00.038 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 60 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.392 sec
+Nov-10 14:47:00.053 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-10 14:47:00.056 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/test_no_sheet.nf.test]
+Nov-10 14:47:00.676 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-10 14:47:00.679 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-10 14:47:00.679 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_no_sheet.nf.test'.
+Nov-10 14:47:00.680 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test 'b6eca94f: -profile test_no_sheet - stub'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-10 14:47:32.125 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_no_sheet.nf.test.snap'
+Nov-10 14:47:32.142 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_no_sheet - stub' match.
+Nov-10 14:47:32.143 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test 'b6eca94f: -profile test_no_sheet - stub' finished. status: PASSED
+Nov-10 14:47:32.146 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-10 14:47:32.147 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
new file mode 100644
index 00000000..a34edd63
--- /dev/null
+++ b/tests/test_conda.nf.test
@@ -0,0 +1,39 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_conda"
+    profile "test_conda"
+
+
+    test("-profile test_conda") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_conda.nf.test.snap b/tests/test_conda.nf.test.snap
new file mode 100644
index 00000000..89442a50
--- /dev/null
+++ b/tests/test_conda.nf.test.snap
@@ -0,0 +1,473 @@
+{
+    "-profile test_conda": {
+        "content": [
+            271,
+            {
+                "CALCULATE_SEQSTATS": {
+                    "python": "3.11.0"
+                },
+                "CALC_GAPS": {
+                    "awk": "1.3.4 20200120"
+                },
+                "CLUSTALO_ALIGN": {
+                    "clustalo": "1.2.4",
+                    "pigz": "2.8)"
+                },
+                "CLUSTALO_GUIDETREE": {
+                    "clustalo": "1.2.4"
+                },
+                "CONCAT_GAPS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_PLDDTS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SEQSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SIMSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SP": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TC": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TCS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONSENSUS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "EXTRACT_PLDDT": {
+                    "awk": "1.3.4 20200120"
+                },
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "FOLDMASON_ALIGN": {
+                    "foldmason": "2.7bd21ed",
+                    "pigz": "2.8)"
+                },
+                "MAFFT_ALIGN": {
+                    "mafft": 7.52,
+                    "pigz": "2.8)"
+                },
+                "MAFFT_GUIDETREE": {
+                    "mafft": 7.525
+                },
+                "MAGUS_ALIGN": {
+                    "MAGUS": "0.2.0",
+                    "pigz": "2.8)"
+                },
+                "MERGE_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MTMALIGN_ALIGN": {
+                    "mTM-align": 20220104,
+                    "pigz": "2.8)"
+                },
+                "MUSCLE5_ALIGN": {
+                    "muscle": 5.1,
+                    "pigz": "2.8)"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
+                },
+                "PARSE_SIM": {
+                    "awk": "1.3.4 20200120",
+                    "cat": 8.32
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
+                },
+                "REGRESSIVE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE3D_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_SP": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_TC": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_SEQREFORMAT_SIM": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_TCS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/toxin-ref",
+                "alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
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+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.scores:md5,838956c4702953572c0d1961e56f6231",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.tcs:md5,103f33166e800cdf3451584459d70b33",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.scores:md5,f8d7715427d702530db4a57cf0b47428",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.tcs:md5,103f33166e800cdf3451584459d70b33",
+                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores:md5,8014939ae866d2f917ee8c9117403f60",
+                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs:md5,7ace90453a3d045f9e7259c98b357b15",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,581bf0c044d61dba20d2797011b1838e",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,b7fd86b2da48202a544036ad14117e3d",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,0f4fc63937804b3e566d9764e94aeb02",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.scores:md5,24bc882e8126622b5c53ac5674412b0d",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.tcs:md5,fafa15d19ed5c8fea69e523de3c530ab",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,2124035ff0abf79322e7a2d3dda8c7c3",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,f351510a048a39584b4368d6bcfa504a",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores:md5,311b5e36b64f42f14f80499b2e383348",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs:md5,b678c0aaaaa9a892ad5481598587232a",
+                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores:md5,e052d797228c6b1a96581b46975cb581",
+                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs:md5,3d19d964275c740a78ea3e9feb8fdf5f",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.scores:md5,d148aa60b22e6b3d681c04b3df63ac4d",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.tcs:md5,f471356c6fbd2ded677f446c1748c13f",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,461fc9bd7f27ec576b7299129e411c13",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,2ec0c2cbb381d51aadb9c4cb8df2c013",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,3f2762f21c823ffae44c4dbd3f937a97",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,3520c83711dae4525482bb74472d7af5",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,6343c7cb5f42d1ef40f74c3016b75941",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,24889456acb2ca3c67cefa42c50a8b9f",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,4b74c0c271882f51820654d557a698b1",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,b5b1539aa0cf75f1b079395c77523b37",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.scores:md5,bed8c781ba285bc4d25939bed76efe16",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.tcs:md5,91cdfdf774cda4cbcdc9d8129381140d",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,890081067b40770970e894eed36df354",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
+                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores:md5,6126690f4a22ed66df5b10689f71903a",
+                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs:md5,bd5c31b7cef9c2edf33bcd18016ec48a",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,68cb8c807b37337497a66daa0117d5d3",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,da89f674513336ed9f5c968d2fe9158a",
+                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,b5a18e94a7a7ca0c4060a0901f6ff363",
+                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,27bcfb8bb054dbc165e3c88b16191f94",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores:md5,1b5fec8307509fa8e4c5c86e2a2bd0d8",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs:md5,ca27c739aacb4828317bb38cd4c58d40",
+                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores:md5,0c163568eed898ec7de506bf74c8bf2c",
+                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs:md5,88bf04af10a61ec012b0413a7989fc42",
+                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.scores:md5,d8d60ce4b7ba0e9dc34da6008022f1b7",
+                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.tcs:md5,a192bc084687b0c1c26f2b7829ea598b",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,5e786930c9639e3a7f7e11c741871db2",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,a8248c5e6176f498721b7b5934893428",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,1e86882c6b31e00a8f5ad42af49fe0a4",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
+                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,ecd8e6013889af7faf62d31997d91182",
+                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,468d3d0bbb3eb539a268e6f58ea8eebd",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,cfc7e04656de59ce988d33e2108a4270",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,8db2422c778f61445344edeffa6b4c47",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,43b5ec2cfa24eed12d9d6cc7799fb476",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,4ca7b374940d81fb43faed7bdeb10fb7",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
+                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
+                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
+                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
+                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
+                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
+                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
+                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
+                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
+                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-10T14:45:54.997896577"
+    }
+}
\ No newline at end of file
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
new file mode 100644
index 00000000..50ce9516
--- /dev/null
+++ b/tests/test_no_sheet.nf.test
@@ -0,0 +1,38 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_no_sheet"
+    profile "test_no_sheet"
+
+    test("-profile test_no_sheet - stub") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_no_sheet.nf.test.snap b/tests/test_no_sheet.nf.test.snap
new file mode 100644
index 00000000..a53079a7
--- /dev/null
+++ b/tests/test_no_sheet.nf.test.snap
@@ -0,0 +1,40 @@
+{
+    "-profile test_no_sheet - stub": {
+        "content": [
+            3,
+            {
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/setoxin-ref",
+                "alignments/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "trees",
+                "trees/setoxin-ref",
+                "trees/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd"
+            ],
+            [
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-06T13:00:00.803514333"
+    }
+}
\ No newline at end of file
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
new file mode 100644
index 00000000..fdd01640
--- /dev/null
+++ b/tests/test_pdb.nf.test
@@ -0,0 +1,39 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_pdb"
+    profile "test_pdb"
+
+
+    test("-profile test_pdb") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_pdb.nf.test.snap b/tests/test_pdb.nf.test.snap
new file mode 100644
index 00000000..a22f241f
--- /dev/null
+++ b/tests/test_pdb.nf.test.snap
@@ -0,0 +1,114 @@
+{
+    "-profile test_pdb": {
+        "content": [
+            30,
+            {
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "FOLDMASON_ALIGN": {
+                    "foldmason": "2.7bd21ed",
+                    "pigz": "2.8)"
+                },
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MTMALIGN_ALIGN": {
+                    "mTM-align": 20220104,
+                    "pigz": "2.8)"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
+                },
+                "TCOFFEE3D_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
+                "evaluation",
+                "evaluation/tcoffee_irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "reports",
+                "reports/multiqc",
+                "reports/multiqc/multiqc_data",
+                "reports/multiqc/multiqc_data/llms-full.txt",
+                "reports/multiqc/multiqc_data/multiqc.log",
+                "reports/multiqc/multiqc_data/multiqc.parquet",
+                "reports/multiqc/multiqc_data/multiqc_citations.txt",
+                "reports/multiqc/multiqc_data/multiqc_data.json",
+                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
+                "reports/multiqc/multiqc_data/multiqc_sources.txt",
+                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
+                "reports/multiqc/multiqc_plots",
+                "reports/multiqc/multiqc_plots/pdf",
+                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
+                "reports/multiqc/multiqc_plots/png",
+                "reports/multiqc/multiqc_plots/png/summary_stats.png",
+                "reports/multiqc/multiqc_plots/svg",
+                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
+                "reports/multiqc/multiqc_report.html",
+                "reports/shiny_app",
+                "reports/shiny_app/complete_summary_stats_eval_times.csv",
+                "reports/shiny_app/run.sh",
+                "reports/shiny_app/shiny_app.py",
+                "reports/shiny_app/static",
+                "reports/shiny_app/static/bootstrap.min.css",
+                "reports/shiny_app/static/favicon.ico",
+                "reports/shiny_app/static/style.css",
+                "reports/visualization",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html",
+                "summary",
+                "summary/complete_summary_stats_eval_times.csv"
+            ],
+            [
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz:md5,bfec7de9e22fb892f573415feab92188",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz:md5,61a0244fb011d129017b7be3e35e72b2",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz:md5,595c2526ce7637b4630837a607914151",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,260e6ec190766c5dfc59a76a02c8efa7",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,59bfba29741dcf51f5ef2589e50c746c",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,380cb01e89fac0f2eae9f5418933b8e5",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-10T14:40:13.752103358"
+    }
+}
\ No newline at end of file

From a11b11af522eb137777fb2f1c598f53b9d34bd90 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 15:10:16 +0100
Subject: [PATCH 45/58] Add new test

---
 .github/workflows/nf-test.yml    |   2 +-
 .nf-test.log                     |  32 +--
 tests/test_conda.nf.test         |  39 ---
 tests/test_conda.nf.test.snap    | 473 -------------------------------
 tests/test_no_sheet.nf.test      |  38 ---
 tests/test_no_sheet.nf.test.snap |  40 ---
 tests/test_pdb.nf.test           |  39 ---
 tests/test_pdb.nf.test.snap      | 114 --------
 8 files changed, 17 insertions(+), 760 deletions(-)
 delete mode 100644 tests/test_conda.nf.test
 delete mode 100644 tests/test_conda.nf.test.snap
 delete mode 100644 tests/test_no_sheet.nf.test
 delete mode 100644 tests/test_no_sheet.nf.test.snap
 delete mode 100644 tests/test_pdb.nf.test
 delete mode 100644 tests/test_pdb.nf.test.snap

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 94d123f0..a14e899a 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -58,7 +58,7 @@ jobs:
           echo ${{ steps.set-shards.outputs.total_shards }}
 
   nf-test:
-    name: "${{ matrix.profile }} | ${{ matrix.NXF_VER }} | ${{ matrix.shard }}/${{ needs.nf-test-changes.outputs.total_shards }}"
+    name: "${{ matrix.profile }} | ${{ matrix.NXF_VER }} |  ${{ github.event.inputs.profile }} | ${{ matrix.shard }}/${{ needs.nf-test-changes.outputs.total_shards }}"
     needs: [nf-test-changes]
     if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
     runs-on: # use self-hosted runners
diff --git a/.nf-test.log b/.nf-test.log
index e24b490f..9c015d3e 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,16 +1,16 @@
-Nov-10 14:46:56.235 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-10 14:46:56.293 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/test_no_sheet.nf.test, --update-snapshot, --profile, +docker]
-Nov-10 14:46:57.950 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-10 14:46:57.953 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-10 14:47:00.038 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 60 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.392 sec
-Nov-10 14:47:00.053 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-10 14:47:00.056 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/test_no_sheet.nf.test]
-Nov-10 14:47:00.676 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-10 14:47:00.679 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-10 14:47:00.679 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_no_sheet.nf.test'.
-Nov-10 14:47:00.680 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test 'b6eca94f: -profile test_no_sheet - stub'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-10 14:47:32.125 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/test_no_sheet.nf.test.snap'
-Nov-10 14:47:32.142 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_no_sheet - stub' match.
-Nov-10 14:47:32.143 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test 'b6eca94f: -profile test_no_sheet - stub' finished. status: PASSED
-Nov-10 14:47:32.146 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-10 14:47:32.147 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-10 15:05:48.863 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-10 15:05:48.898 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-10 15:05:51.139 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-10 15:05:51.142 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-10 15:05:52.772 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.575 sec
+Nov-10 15:05:52.775 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-10 15:05:52.775 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-10 15:05:52.982 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-10 15:05:52.982 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-10 15:05:52.983 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-10 15:05:52.983 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-10 15:09:38.493 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 15:09:38.744 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' match.
+Nov-10 15:09:38.746 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-10 15:09:38.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-10 15:09:38.779 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
deleted file mode 100644
index a34edd63..00000000
--- a/tests/test_conda.nf.test
+++ /dev/null
@@ -1,39 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_conda"
-    profile "test_conda"
-
-
-    test("-profile test_conda") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_conda.nf.test.snap b/tests/test_conda.nf.test.snap
deleted file mode 100644
index 89442a50..00000000
--- a/tests/test_conda.nf.test.snap
+++ /dev/null
@@ -1,473 +0,0 @@
-{
-    "-profile test_conda": {
-        "content": [
-            271,
-            {
-                "CALCULATE_SEQSTATS": {
-                    "python": "3.11.0"
-                },
-                "CALC_GAPS": {
-                    "awk": "1.3.4 20200120"
-                },
-                "CLUSTALO_ALIGN": {
-                    "clustalo": "1.2.4",
-                    "pigz": "2.8)"
-                },
-                "CLUSTALO_GUIDETREE": {
-                    "clustalo": "1.2.4"
-                },
-                "CONCAT_GAPS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_PLDDTS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SEQSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SIMSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SP": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TC": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TCS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONSENSUS": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "EXTRACT_PLDDT": {
-                    "awk": "1.3.4 20200120"
-                },
-                "FAMSA_ALIGN": {
-                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
-                },
-                "FAMSA_GUIDETREE": {
-                    "famsa": "2.2.2- (2022-10-09)"
-                },
-                "FASTAVALIDATOR": {
-                    "py_fasta_validator": 0.6
-                },
-                "FOLDMASON_ALIGN": {
-                    "foldmason": "2.7bd21ed",
-                    "pigz": "2.8)"
-                },
-                "MAFFT_ALIGN": {
-                    "mafft": 7.52,
-                    "pigz": "2.8)"
-                },
-                "MAFFT_GUIDETREE": {
-                    "mafft": 7.525
-                },
-                "MAGUS_ALIGN": {
-                    "MAGUS": "0.2.0",
-                    "pigz": "2.8)"
-                },
-                "MERGE_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MTMALIGN_ALIGN": {
-                    "mTM-align": 20220104,
-                    "pigz": "2.8)"
-                },
-                "MUSCLE5_ALIGN": {
-                    "muscle": 5.1,
-                    "pigz": "2.8)"
-                },
-                "PARSE_IRMSD": {
-                    "python": "3.11.0"
-                },
-                "PARSE_SIM": {
-                    "awk": "1.3.4 20200120",
-                    "cat": 8.32
-                },
-                "PIGZ_COMPRESS": {
-                    "pigz": 2.8
-                },
-                "PREPARE_SHINY": {
-                    "bash": "5.1.16 3"
-                },
-                "REGRESSIVE_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE3D_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALNCOMPARE_SP": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALNCOMPARE_TC": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_EXTRACTFROMPDB": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_IRMSD": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_SEQREFORMAT_SIM": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_TCS": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/seatoxin-ref",
-                "alignments/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln",
-                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default.fa.gz",
-                "alignments/toxin-ref",
-                "alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln",
-                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
-                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
-                "evaluation",
-                "evaluation/complete_summary_eval.csv",
-                "evaluation/consensus",
-                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.html",
-                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.sp_ascii",
-                "evaluation/consensus/toxin-ref_CONSENSUS.aln.html",
-                "evaluation/consensus/toxin-ref_CONSENSUS.aln.sp_ascii",
-                "evaluation/tcoffee_irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores",
-                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs",
-                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
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-                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,a8248c5e6176f498721b7b5934893428",
-                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,1e86882c6b31e00a8f5ad42af49fe0a4",
-                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
-                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,ecd8e6013889af7faf62d31997d91182",
-                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,468d3d0bbb3eb539a268e6f58ea8eebd",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,cfc7e04656de59ce988d33e2108a4270",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,8db2422c778f61445344edeffa6b4c47",
-                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,43b5ec2cfa24eed12d9d6cc7799fb476",
-                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,4ca7b374940d81fb43faed7bdeb10fb7",
-                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
-                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
-                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
-                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
-                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
-                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
-                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
-                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
-                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
-                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
-                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
-                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
-                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
-                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-10T14:45:54.997896577"
-    }
-}
\ No newline at end of file
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
deleted file mode 100644
index 50ce9516..00000000
--- a/tests/test_no_sheet.nf.test
+++ /dev/null
@@ -1,38 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_no_sheet"
-    profile "test_no_sheet"
-
-    test("-profile test_no_sheet - stub") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_no_sheet.nf.test.snap b/tests/test_no_sheet.nf.test.snap
deleted file mode 100644
index a53079a7..00000000
--- a/tests/test_no_sheet.nf.test.snap
+++ /dev/null
@@ -1,40 +0,0 @@
-{
-    "-profile test_no_sheet - stub": {
-        "content": [
-            3,
-            {
-                "FAMSA_ALIGN": {
-                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
-                },
-                "FAMSA_GUIDETREE": {
-                    "famsa": "2.2.2- (2022-10-09)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/setoxin-ref",
-                "alignments/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz",
-                "pipeline_info",
-                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
-                "trees",
-                "trees/setoxin-ref",
-                "trees/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd"
-            ],
-            [
-                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz:md5,9394e09dd7f576da794a74de60327324",
-                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-06T13:00:00.803514333"
-    }
-}
\ No newline at end of file
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
deleted file mode 100644
index fdd01640..00000000
--- a/tests/test_pdb.nf.test
+++ /dev/null
@@ -1,39 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_pdb"
-    profile "test_pdb"
-
-
-    test("-profile test_pdb") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_pdb.nf.test.snap b/tests/test_pdb.nf.test.snap
deleted file mode 100644
index a22f241f..00000000
--- a/tests/test_pdb.nf.test.snap
+++ /dev/null
@@ -1,114 +0,0 @@
-{
-    "-profile test_pdb": {
-        "content": [
-            30,
-            {
-                "FASTAVALIDATOR": {
-                    "py_fasta_validator": 0.6
-                },
-                "FOLDMASON_ALIGN": {
-                    "foldmason": "2.7bd21ed",
-                    "pigz": "2.8)"
-                },
-                "MERGE_STATS_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MTMALIGN_ALIGN": {
-                    "mTM-align": 20220104,
-                    "pigz": "2.8)"
-                },
-                "PARSE_IRMSD": {
-                    "python": "3.11.0"
-                },
-                "PIGZ_COMPRESS": {
-                    "pigz": 2.8
-                },
-                "PREPARE_SHINY": {
-                    "bash": "5.1.16 3"
-                },
-                "TCOFFEE3D_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_EXTRACTFROMPDB": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_IRMSD": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/seatoxin-ref",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
-                "evaluation",
-                "evaluation/tcoffee_irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
-                "pipeline_info",
-                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
-                "reports",
-                "reports/multiqc",
-                "reports/multiqc/multiqc_data",
-                "reports/multiqc/multiqc_data/llms-full.txt",
-                "reports/multiqc/multiqc_data/multiqc.log",
-                "reports/multiqc/multiqc_data/multiqc.parquet",
-                "reports/multiqc/multiqc_data/multiqc_citations.txt",
-                "reports/multiqc/multiqc_data/multiqc_data.json",
-                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
-                "reports/multiqc/multiqc_data/multiqc_sources.txt",
-                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
-                "reports/multiqc/multiqc_plots",
-                "reports/multiqc/multiqc_plots/pdf",
-                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
-                "reports/multiqc/multiqc_plots/png",
-                "reports/multiqc/multiqc_plots/png/summary_stats.png",
-                "reports/multiqc/multiqc_plots/svg",
-                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
-                "reports/multiqc/multiqc_report.html",
-                "reports/shiny_app",
-                "reports/shiny_app/complete_summary_stats_eval_times.csv",
-                "reports/shiny_app/run.sh",
-                "reports/shiny_app/shiny_app.py",
-                "reports/shiny_app/static",
-                "reports/shiny_app/static/bootstrap.min.css",
-                "reports/shiny_app/static/favicon.ico",
-                "reports/shiny_app/static/style.css",
-                "reports/visualization",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html",
-                "summary",
-                "summary/complete_summary_stats_eval_times.csv"
-            ],
-            [
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz:md5,bfec7de9e22fb892f573415feab92188",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz:md5,61a0244fb011d129017b7be3e35e72b2",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz:md5,595c2526ce7637b4630837a607914151",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,260e6ec190766c5dfc59a76a02c8efa7",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,59bfba29741dcf51f5ef2589e50c746c",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,380cb01e89fac0f2eae9f5418933b8e5",
-                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
-                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
-                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
-                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
-                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-10T14:40:13.752103358"
-    }
-}
\ No newline at end of file

From b177f5f3a4a0f5721cbe6521eb7fe771ba8d0b29 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 15:31:48 +0100
Subject: [PATCH 46/58] Add new test

---
 .github/actions/nf-test/action.yml | 3 ++-
 tests/default.nf.test              | 1 +
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/actions/nf-test/action.yml b/.github/actions/nf-test/action.yml
index 3b9724c7..51e7a14d 100644
--- a/.github/actions/nf-test/action.yml
+++ b/.github/actions/nf-test/action.yml
@@ -57,13 +57,14 @@ runs:
         conda-remove-defaults: true
 
     - name: Run nf-test
+      if: contains(inputs.profile, 'conda')
       shell: bash
       env:
         NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
       run: |
         nf-test test \
           --profile=+${{ inputs.profile }} \
-          $(if [ -n "${{ inputs.tags }}" ]; then echo "--tag ${{ inputs.tags }}"; fi) \
+          --tag "conda"
           --ci \
           --changed-since HEAD^ \
           --verbose \
diff --git a/tests/default.nf.test b/tests/default.nf.test
index 872d0f56..87e52625 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test pipeline"
     script "../main.nf"
     tag "pipeline"
+    tag "conda"
     tag "test_tiny"
     profile "test_tiny"
 

From 822670abeb91655acd42f474d843bf4fa5a667fd Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 15:56:43 +0100
Subject: [PATCH 47/58] add all

---
 .github/actions/nf-test/action.yml | 22 ++++++++++++++++++--
 .github/workflows/nf-test.yml      |  2 +-
 .nf-test.log                       | 32 +++++++++++++++---------------
 tests/default.nf.test              |  1 +
 4 files changed, 38 insertions(+), 19 deletions(-)

diff --git a/.github/actions/nf-test/action.yml b/.github/actions/nf-test/action.yml
index 51e7a14d..e1f5ee00 100644
--- a/.github/actions/nf-test/action.yml
+++ b/.github/actions/nf-test/action.yml
@@ -56,7 +56,7 @@ runs:
         channel-priority: strict
         conda-remove-defaults: true
 
-    - name: Run nf-test
+    - name: Run nf-test conda
       if: contains(inputs.profile, 'conda')
       shell: bash
       env:
@@ -64,7 +64,25 @@ runs:
       run: |
         nf-test test \
           --profile=+${{ inputs.profile }} \
-          --tag "conda"
+          --tag 'conda' \
+          --ci \
+          --changed-since HEAD^ \
+          --verbose \
+          --tap=test.tap \
+          --shard ${{ inputs.shard }}/${{ inputs.total_shards }}
+
+          # Save the absolute path of the test.tap file to the output
+          echo "tap_file_path=$(realpath test.tap)" >> $GITHUB_OUTPUT
+
+    - name: Run nf-test non-conda
+      if: contains(inputs.profile, 'docker') || contains(inputs.profile, 'singularity')
+      shell: bash
+      env:
+        NFT_WORKDIR: ${{ env.NFT_WORKDIR }}
+      run: |
+        nf-test test \
+          --profile=+${{ inputs.profile }} \
+          --tag 'docker_singularity' \
           --ci \
           --changed-since HEAD^ \
           --verbose \
diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index a14e899a..94d123f0 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -58,7 +58,7 @@ jobs:
           echo ${{ steps.set-shards.outputs.total_shards }}
 
   nf-test:
-    name: "${{ matrix.profile }} | ${{ matrix.NXF_VER }} |  ${{ github.event.inputs.profile }} | ${{ matrix.shard }}/${{ needs.nf-test-changes.outputs.total_shards }}"
+    name: "${{ matrix.profile }} | ${{ matrix.NXF_VER }} | ${{ matrix.shard }}/${{ needs.nf-test-changes.outputs.total_shards }}"
     needs: [nf-test-changes]
     if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
     runs-on: # use self-hosted runners
diff --git a/.nf-test.log b/.nf-test.log
index 9c015d3e..e7fe316d 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,16 +1,16 @@
-Nov-10 15:05:48.863 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-10 15:05:48.898 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-10 15:05:51.139 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-10 15:05:51.142 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-10 15:05:52.772 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.575 sec
-Nov-10 15:05:52.775 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-10 15:05:52.775 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-10 15:05:52.982 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-10 15:05:52.982 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-10 15:05:52.983 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-10 15:05:52.983 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-10 15:09:38.493 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 15:09:38.744 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' match.
-Nov-10 15:09:38.746 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-10 15:09:38.767 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-10 15:09:38.779 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-10 15:55:25.519 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-10 15:55:25.534 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-10 15:55:26.267 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-10 15:55:26.268 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-10 15:55:26.906 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.246 sec
+Nov-10 15:55:26.908 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-10 15:55:26.908 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-10 15:55:27.069 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-10 15:55:27.069 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-10 15:55:27.069 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-10 15:55:27.070 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-10 15:56:29.853 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
+Nov-10 15:56:29.890 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' match.
+Nov-10 15:56:29.891 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
+Nov-10 15:56:29.892 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
+Nov-10 15:56:29.892 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
diff --git a/tests/default.nf.test b/tests/default.nf.test
index 87e52625..40392438 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -3,6 +3,7 @@ nextflow_pipeline {
     name "Test pipeline"
     script "../main.nf"
     tag "pipeline"
+    tag "docker_singularity"
     tag "conda"
     tag "test_tiny"
     profile "test_tiny"

From 8676630b9700f3ee9d2f07db06ea5880081886e1 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 15:59:00 +0100
Subject: [PATCH 48/58] add labels for profile tests

---
 tests/default.nf.test            |   1 -
 tests/test_conda.nf.test         |  40 +++
 tests/test_conda.nf.test.snap    | 473 +++++++++++++++++++++++++++++++
 tests/test_no_sheet.nf.test      |  40 +++
 tests/test_no_sheet.nf.test.snap |  40 +++
 tests/test_pdb.nf.test           |  41 +++
 tests/test_pdb.nf.test.snap      | 114 ++++++++
 7 files changed, 748 insertions(+), 1 deletion(-)
 create mode 100644 tests/test_conda.nf.test
 create mode 100644 tests/test_conda.nf.test.snap
 create mode 100644 tests/test_no_sheet.nf.test
 create mode 100644 tests/test_no_sheet.nf.test.snap
 create mode 100644 tests/test_pdb.nf.test
 create mode 100644 tests/test_pdb.nf.test.snap

diff --git a/tests/default.nf.test b/tests/default.nf.test
index 40392438..87e52625 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -3,7 +3,6 @@ nextflow_pipeline {
     name "Test pipeline"
     script "../main.nf"
     tag "pipeline"
-    tag "docker_singularity"
     tag "conda"
     tag "test_tiny"
     profile "test_tiny"
diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
new file mode 100644
index 00000000..2a734a37
--- /dev/null
+++ b/tests/test_conda.nf.test
@@ -0,0 +1,40 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_conda"
+    tag "conda"
+    profile "test_conda"
+
+
+    test("-profile test_conda") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_conda.nf.test.snap b/tests/test_conda.nf.test.snap
new file mode 100644
index 00000000..89442a50
--- /dev/null
+++ b/tests/test_conda.nf.test.snap
@@ -0,0 +1,473 @@
+{
+    "-profile test_conda": {
+        "content": [
+            271,
+            {
+                "CALCULATE_SEQSTATS": {
+                    "python": "3.11.0"
+                },
+                "CALC_GAPS": {
+                    "awk": "1.3.4 20200120"
+                },
+                "CLUSTALO_ALIGN": {
+                    "clustalo": "1.2.4",
+                    "pigz": "2.8)"
+                },
+                "CLUSTALO_GUIDETREE": {
+                    "clustalo": "1.2.4"
+                },
+                "CONCAT_GAPS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_PLDDTS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SEQSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SIMSTATS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_SP": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TC": {
+                    "csvtk": "0.31.0"
+                },
+                "CONCAT_TCS": {
+                    "csvtk": "0.31.0"
+                },
+                "CONSENSUS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "EXTRACT_PLDDT": {
+                    "awk": "1.3.4 20200120"
+                },
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "FOLDMASON_ALIGN": {
+                    "foldmason": "2.7bd21ed",
+                    "pigz": "2.8)"
+                },
+                "MAFFT_ALIGN": {
+                    "mafft": 7.52,
+                    "pigz": "2.8)"
+                },
+                "MAFFT_GUIDETREE": {
+                    "mafft": 7.525
+                },
+                "MAGUS_ALIGN": {
+                    "MAGUS": "0.2.0",
+                    "pigz": "2.8)"
+                },
+                "MERGE_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS": {
+                    "csvtk": "0.31.0"
+                },
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MTMALIGN_ALIGN": {
+                    "mTM-align": 20220104,
+                    "pigz": "2.8)"
+                },
+                "MUSCLE5_ALIGN": {
+                    "muscle": 5.1,
+                    "pigz": "2.8)"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
+                },
+                "PARSE_SIM": {
+                    "awk": "1.3.4 20200120",
+                    "cat": 8.32
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
+                },
+                "REGRESSIVE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE3D_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_SP": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_ALNCOMPARE_TC": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_SEQREFORMAT_SIM": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_TCS": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln",
+                "alignments/seatoxin-ref/seatoxin-ref_CONSENSUS.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/toxin-ref",
+                "alignments/toxin-ref/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln",
+                "alignments/toxin-ref/toxin-ref_CONSENSUS.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_FAMSA-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.fas.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAFFT-args-default.fas.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MAGUS-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz",
+                "alignments/toxin-ref/toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz",
+                "evaluation",
+                "evaluation/complete_summary_eval.csv",
+                "evaluation/consensus",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/seatoxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.html",
+                "evaluation/consensus/toxin-ref_CONSENSUS.aln.sp_ascii",
+                "evaluation/tcoffee_irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores",
+                "evaluation/tcoffee_tcs/toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "reports",
+                "reports/multiqc",
+                "reports/multiqc/multiqc_data",
+                "reports/multiqc/multiqc_data/llms-full.txt",
+                "reports/multiqc/multiqc_data/multiqc.log",
+                "reports/multiqc/multiqc_data/multiqc.parquet",
+                "reports/multiqc/multiqc_data/multiqc_citations.txt",
+                "reports/multiqc/multiqc_data/multiqc_data.json",
+                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
+                "reports/multiqc/multiqc_data/multiqc_sources.txt",
+                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
+                "reports/multiqc/multiqc_plots",
+                "reports/multiqc/multiqc_plots/pdf",
+                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
+                "reports/multiqc/multiqc_plots/png",
+                "reports/multiqc/multiqc_plots/png/summary_stats.png",
+                "reports/multiqc/multiqc_plots/svg",
+                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
+                "reports/multiqc/multiqc_report.html",
+                "reports/shiny_app",
+                "reports/shiny_app/complete_summary_stats_eval_times.csv",
+                "reports/shiny_app/run.sh",
+                "reports/shiny_app/shiny_app.py",
+                "reports/shiny_app/static",
+                "reports/shiny_app/static/bootstrap.min.css",
+                "reports/shiny_app/static/favicon.ico",
+                "reports/shiny_app/static/style.css",
+                "reports/visualization",
+                "reports/visualization/seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FAMSA-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MAFFT-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MAGUS-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default.html",
+                "reports/visualization/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.html",
+                "reports/visualization/seatoxin-ref_FAMSA-args-default_MAGUS-args-default.html",
+                "reports/visualization/seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default.html",
+                "stats",
+                "stats/complete_summary_stats.csv",
+                "stats/sequences",
+                "stats/sequences/perc_sim",
+                "stats/sequences/perc_sim/seatoxin-ref.txt",
+                "stats/sequences/perc_sim/toxin-ref.txt",
+                "stats/sequences/seqstats",
+                "stats/sequences/seqstats/seatoxin-ref_seqstats.csv",
+                "stats/sequences/seqstats/toxin-ref_seqstats.csv",
+                "stats/structures",
+                "stats/structures/plddt",
+                "stats/structures/plddt/seatoxin-ref_full_plddt.csv",
+                "summary",
+                "summary/complete_summary_stats_eval_times.csv",
+                "trees",
+                "trees/seatoxin-ref",
+                "trees/seatoxin-ref/seatoxin-ref_CLUSTALO-args-default.dnd",
+                "trees/seatoxin-ref/seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd",
+                "trees/seatoxin-ref/seatoxin-ref_FAMSA-args-default.dnd",
+                "trees/seatoxin-ref/seatoxin-ref_MAFFT-args-default.dnd",
+                "trees/toxin-ref",
+                "trees/toxin-ref/toxin-ref_CLUSTALO-args-default.dnd",
+                "trees/toxin-ref/toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd",
+                "trees/toxin-ref/toxin-ref_FAMSA-args-default.dnd",
+                "trees/toxin-ref/toxin-ref_MAFFT-args-default.dnd"
+            ],
+            [
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+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz:md5,20844d321995ed865277254366ad9523",
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+                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default.aln.gz:md5,d21d49df95d7c802eac5896cffa6696b",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3.aln.gz:md5,cfa9a5c918856ab85873585350bc4b15",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default.aln.gz:md5,c6556744aeee7ba25803dab39963ef0b",
+                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default.aln.gz:md5,66109d372abe90ab292b326a3d411e3a",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default.aln.gz:md5,9ec12eeea5bf34fc1149d69898728273",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default.aln.gz:md5,e27536fae5096430fba926717cd67250",
+                "seatoxin-ref_CONSENSUS.aln.sp_ascii:md5,a3fdc45127e56dbfc0f42f82d706472a",
+                "toxin-ref_CONSENSUS.aln.sp_ascii:md5,4d7826fc7d7c4428f1f64596633cb975",
+                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,09ec92e695fdc25393814c84c60a8e3a",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_irmsd.irmsd:md5,09ec92e695fdc25393814c84c60a8e3a",
+                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_irmsd.irmsd:md5,e29674d0f4a89f3f6e1f40f7f75a4f27",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd:md5,bdeb0fc4d3fa3be5149d8a9886ffdadf",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,ec1e2fb7e81c8edd37c4df83d95a4061",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd:md5,68b1bc3bbbe887161207fb530fffc30a",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_irmsd.irmsd:md5,3d931dbad8dad549599b9e9433751383",
+                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_irmsd.irmsd:md5,92d6e5e5505a37c1b3ff43f5ec44c2f1",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,93a8fcfe9d570adda45809e4622db7d9",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_irmsd.irmsd:md5,db147089d52ba8f926a151ea1daa3128",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_irmsd.irmsd:md5,c35bf60f4e03bbcc9a27a858cd7c0231",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_irmsd.irmsd:md5,23baa7184982ed96fc6a352479973bca",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,b2667d1e27fad606a82cb3d94dc24dd0",
+                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,f65e2f5c176e9cd11a3c90c332c3069e",
+                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.scores:md5,838956c4702953572c0d1961e56f6231",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.tcs:md5,103f33166e800cdf3451584459d70b33",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.scores:md5,f8d7715427d702530db4a57cf0b47428",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.tcs:md5,103f33166e800cdf3451584459d70b33",
+                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores:md5,8014939ae866d2f917ee8c9117403f60",
+                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs:md5,7ace90453a3d045f9e7259c98b357b15",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,581bf0c044d61dba20d2797011b1838e",
+                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,b7fd86b2da48202a544036ad14117e3d",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,0f4fc63937804b3e566d9764e94aeb02",
+                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.scores:md5,24bc882e8126622b5c53ac5674412b0d",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.tcs:md5,fafa15d19ed5c8fea69e523de3c530ab",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,2124035ff0abf79322e7a2d3dda8c7c3",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,f351510a048a39584b4368d6bcfa504a",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores:md5,311b5e36b64f42f14f80499b2e383348",
+                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs:md5,b678c0aaaaa9a892ad5481598587232a",
+                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores:md5,e052d797228c6b1a96581b46975cb581",
+                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs:md5,3d19d964275c740a78ea3e9feb8fdf5f",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.scores:md5,d148aa60b22e6b3d681c04b3df63ac4d",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.tcs:md5,f471356c6fbd2ded677f446c1748c13f",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,461fc9bd7f27ec576b7299129e411c13",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,2ec0c2cbb381d51aadb9c4cb8df2c013",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,3f2762f21c823ffae44c4dbd3f937a97",
+                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,3520c83711dae4525482bb74472d7af5",
+                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,6343c7cb5f42d1ef40f74c3016b75941",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,24889456acb2ca3c67cefa42c50a8b9f",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,4b74c0c271882f51820654d557a698b1",
+                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,b5b1539aa0cf75f1b079395c77523b37",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.scores:md5,bed8c781ba285bc4d25939bed76efe16",
+                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.tcs:md5,91cdfdf774cda4cbcdc9d8129381140d",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,890081067b40770970e894eed36df354",
+                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
+                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores:md5,6126690f4a22ed66df5b10689f71903a",
+                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs:md5,bd5c31b7cef9c2edf33bcd18016ec48a",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,68cb8c807b37337497a66daa0117d5d3",
+                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,da89f674513336ed9f5c968d2fe9158a",
+                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,b5a18e94a7a7ca0c4060a0901f6ff363",
+                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,27bcfb8bb054dbc165e3c88b16191f94",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores:md5,1b5fec8307509fa8e4c5c86e2a2bd0d8",
+                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs:md5,ca27c739aacb4828317bb38cd4c58d40",
+                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores:md5,0c163568eed898ec7de506bf74c8bf2c",
+                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs:md5,88bf04af10a61ec012b0413a7989fc42",
+                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.scores:md5,d8d60ce4b7ba0e9dc34da6008022f1b7",
+                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.tcs:md5,a192bc084687b0c1c26f2b7829ea598b",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,5e786930c9639e3a7f7e11c741871db2",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,a8248c5e6176f498721b7b5934893428",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,1e86882c6b31e00a8f5ad42af49fe0a4",
+                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
+                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,ecd8e6013889af7faf62d31997d91182",
+                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,468d3d0bbb3eb539a268e6f58ea8eebd",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,cfc7e04656de59ce988d33e2108a4270",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,8db2422c778f61445344edeffa6b4c47",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,43b5ec2cfa24eed12d9d6cc7799fb476",
+                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,4ca7b374940d81fb43faed7bdeb10fb7",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
+                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
+                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
+                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
+                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
+                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
+                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
+                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
+                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
+                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
+                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
+                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-10T14:45:54.997896577"
+    }
+}
\ No newline at end of file
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
new file mode 100644
index 00000000..4355bc03
--- /dev/null
+++ b/tests/test_no_sheet.nf.test
@@ -0,0 +1,40 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_no_sheet"
+    tag "docker_singularity"
+    tag "conda"
+    profile "test_no_sheet"
+
+    test("-profile test_no_sheet - stub") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_no_sheet.nf.test.snap b/tests/test_no_sheet.nf.test.snap
new file mode 100644
index 00000000..a53079a7
--- /dev/null
+++ b/tests/test_no_sheet.nf.test.snap
@@ -0,0 +1,40 @@
+{
+    "-profile test_no_sheet - stub": {
+        "content": [
+            3,
+            {
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/setoxin-ref",
+                "alignments/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "trees",
+                "trees/setoxin-ref",
+                "trees/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd"
+            ],
+            [
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-06T13:00:00.803514333"
+    }
+}
\ No newline at end of file
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
new file mode 100644
index 00000000..cbe732b8
--- /dev/null
+++ b/tests/test_pdb.nf.test
@@ -0,0 +1,41 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_pdb"
+    tag "docker_singularity"
+    tag "conda"
+    profile "test_pdb"
+
+
+    test("-profile test_pdb") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_pdb.nf.test.snap b/tests/test_pdb.nf.test.snap
new file mode 100644
index 00000000..a22f241f
--- /dev/null
+++ b/tests/test_pdb.nf.test.snap
@@ -0,0 +1,114 @@
+{
+    "-profile test_pdb": {
+        "content": [
+            30,
+            {
+                "FASTAVALIDATOR": {
+                    "py_fasta_validator": 0.6
+                },
+                "FOLDMASON_ALIGN": {
+                    "foldmason": "2.7bd21ed",
+                    "pigz": "2.8)"
+                },
+                "MERGE_STATS_EVAL": {
+                    "csvtk": "0.31.0"
+                },
+                "MTMALIGN_ALIGN": {
+                    "mTM-align": 20220104,
+                    "pigz": "2.8)"
+                },
+                "PARSE_IRMSD": {
+                    "python": "3.11.0"
+                },
+                "PIGZ_COMPRESS": {
+                    "pigz": 2.8
+                },
+                "PREPARE_SHINY": {
+                    "bash": "5.1.16 3"
+                },
+                "TCOFFEE3D_ALIGN": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "TCOFFEE_EXTRACTFROMPDB": {
+                    "tcoffee": "13.46.0.919e8c6b"
+                },
+                "TCOFFEE_IRMSD": {
+                    "tcoffee": "13.46.0.919e8c6b",
+                    "pigz": "2.8)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/seatoxin-ref",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
+                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
+                "evaluation",
+                "evaluation/tcoffee_irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
+                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "reports",
+                "reports/multiqc",
+                "reports/multiqc/multiqc_data",
+                "reports/multiqc/multiqc_data/llms-full.txt",
+                "reports/multiqc/multiqc_data/multiqc.log",
+                "reports/multiqc/multiqc_data/multiqc.parquet",
+                "reports/multiqc/multiqc_data/multiqc_citations.txt",
+                "reports/multiqc/multiqc_data/multiqc_data.json",
+                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
+                "reports/multiqc/multiqc_data/multiqc_sources.txt",
+                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
+                "reports/multiqc/multiqc_plots",
+                "reports/multiqc/multiqc_plots/pdf",
+                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
+                "reports/multiqc/multiqc_plots/png",
+                "reports/multiqc/multiqc_plots/png/summary_stats.png",
+                "reports/multiqc/multiqc_plots/svg",
+                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
+                "reports/multiqc/multiqc_report.html",
+                "reports/shiny_app",
+                "reports/shiny_app/complete_summary_stats_eval_times.csv",
+                "reports/shiny_app/run.sh",
+                "reports/shiny_app/shiny_app.py",
+                "reports/shiny_app/static",
+                "reports/shiny_app/static/bootstrap.min.css",
+                "reports/shiny_app/static/favicon.ico",
+                "reports/shiny_app/static/style.css",
+                "reports/visualization",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html",
+                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html",
+                "summary",
+                "summary/complete_summary_stats_eval_times.csv"
+            ],
+            [
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz:md5,bfec7de9e22fb892f573415feab92188",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz:md5,61a0244fb011d129017b7be3e35e72b2",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz:md5,595c2526ce7637b4630837a607914151",
+                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,260e6ec190766c5dfc59a76a02c8efa7",
+                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,59bfba29741dcf51f5ef2589e50c746c",
+                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,380cb01e89fac0f2eae9f5418933b8e5",
+                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
+                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
+                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
+                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
+                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-10T14:40:13.752103358"
+    }
+}
\ No newline at end of file

From 46da962dea91e4dac1b01b58d3697b43a93a9e2f Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 16:09:57 +0100
Subject: [PATCH 49/58] add labels for profile tests

---
 tests/default.nf.test | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index 87e52625..ea9f5d92 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -4,11 +4,11 @@ nextflow_pipeline {
     script "../main.nf"
     tag "pipeline"
     tag "conda"
-    tag "test_tiny"
-    profile "test_tiny"
+    tag "test"
+    profile "test"
 
 
-    test("-profile test_tiny") {
+    test("-profile test") {
 
         when {
             params {

From e831236cb5e564c94d160c011db21f819fc608f7 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Mon, 10 Nov 2025 16:14:00 +0100
Subject: [PATCH 50/58] add labels for profile tests

---
 tests/default.nf.test | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tests/default.nf.test b/tests/default.nf.test
index ea9f5d92..bfc5979b 100644
--- a/tests/default.nf.test
+++ b/tests/default.nf.test
@@ -3,7 +3,7 @@ nextflow_pipeline {
     name "Test pipeline"
     script "../main.nf"
     tag "pipeline"
-    tag "conda"
+    tag "docker_singularity"
     tag "test"
     profile "test"
 

From 07916b99db02384be2b3a9d217d86bd8d4618f85 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 11 Nov 2025 10:37:00 +0100
Subject: [PATCH 51/58] increase resources runner

---
 .github/workflows/nf-test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 94d123f0..01db4c40 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -29,7 +29,7 @@ jobs:
     name: nf-test-changes
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test-changes
-      - runner=4cpu-linux-x64
+      - runner=8cpu-linux-x64
     outputs:
       shard: ${{ steps.set-shards.outputs.shard }}
       total_shards: ${{ steps.set-shards.outputs.total_shards }}

From 228e95a0cee42d8be34eb2fc4a7e164431d1bf2f Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 11 Nov 2025 10:43:30 +0100
Subject: [PATCH 52/58] increase resources runner

---
 .github/workflows/nf-test.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 01db4c40..624ffb17 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -29,7 +29,7 @@ jobs:
     name: nf-test-changes
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test-changes
-      - runner=8cpu-linux-x64
+      - runner=4cpu-linux-x64
     outputs:
       shard: ${{ steps.set-shards.outputs.shard }}
       total_shards: ${{ steps.set-shards.outputs.total_shards }}
@@ -63,7 +63,7 @@ jobs:
     if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test
-      - runner=4cpu-linux-x64
+      - runner=8cpu-linux-x64
     strategy:
       fail-fast: false
       matrix:

From 8c6571c104110bd4fc99ec05aabe07af3b12ab01 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 11 Nov 2025 10:49:40 +0100
Subject: [PATCH 53/58] increase resources runner (and temporarly remove tests)

---
 .github/workflows/nf-test.yml    |   2 +-
 tests/test_conda.nf.test         |  40 ---
 tests/test_conda.nf.test.snap    | 473 -------------------------------
 tests/test_no_sheet.nf.test      |  40 ---
 tests/test_no_sheet.nf.test.snap |  40 ---
 tests/test_pdb.nf.test           |  41 ---
 tests/test_pdb.nf.test.snap      | 114 --------
 7 files changed, 1 insertion(+), 749 deletions(-)
 delete mode 100644 tests/test_conda.nf.test
 delete mode 100644 tests/test_conda.nf.test.snap
 delete mode 100644 tests/test_no_sheet.nf.test
 delete mode 100644 tests/test_no_sheet.nf.test.snap
 delete mode 100644 tests/test_pdb.nf.test
 delete mode 100644 tests/test_pdb.nf.test.snap

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 624ffb17..82d82a3a 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -63,7 +63,7 @@ jobs:
     if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test
-      - runner=8cpu-linux-x64
+      - runner=16cpu-linux-x64
     strategy:
       fail-fast: false
       matrix:
diff --git a/tests/test_conda.nf.test b/tests/test_conda.nf.test
deleted file mode 100644
index 2a734a37..00000000
--- a/tests/test_conda.nf.test
+++ /dev/null
@@ -1,40 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_conda"
-    tag "conda"
-    profile "test_conda"
-
-
-    test("-profile test_conda") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_conda.nf.test.snap b/tests/test_conda.nf.test.snap
deleted file mode 100644
index 89442a50..00000000
--- a/tests/test_conda.nf.test.snap
+++ /dev/null
@@ -1,473 +0,0 @@
-{
-    "-profile test_conda": {
-        "content": [
-            271,
-            {
-                "CALCULATE_SEQSTATS": {
-                    "python": "3.11.0"
-                },
-                "CALC_GAPS": {
-                    "awk": "1.3.4 20200120"
-                },
-                "CLUSTALO_ALIGN": {
-                    "clustalo": "1.2.4",
-                    "pigz": "2.8)"
-                },
-                "CLUSTALO_GUIDETREE": {
-                    "clustalo": "1.2.4"
-                },
-                "CONCAT_GAPS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_PLDDTS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SEQSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SIMSTATS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_SP": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TC": {
-                    "csvtk": "0.31.0"
-                },
-                "CONCAT_TCS": {
-                    "csvtk": "0.31.0"
-                },
-                "CONSENSUS": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "EXTRACT_PLDDT": {
-                    "awk": "1.3.4 20200120"
-                },
-                "FAMSA_ALIGN": {
-                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
-                },
-                "FAMSA_GUIDETREE": {
-                    "famsa": "2.2.2- (2022-10-09)"
-                },
-                "FASTAVALIDATOR": {
-                    "py_fasta_validator": 0.6
-                },
-                "FOLDMASON_ALIGN": {
-                    "foldmason": "2.7bd21ed",
-                    "pigz": "2.8)"
-                },
-                "MAFFT_ALIGN": {
-                    "mafft": 7.52,
-                    "pigz": "2.8)"
-                },
-                "MAFFT_GUIDETREE": {
-                    "mafft": 7.525
-                },
-                "MAGUS_ALIGN": {
-                    "MAGUS": "0.2.0",
-                    "pigz": "2.8)"
-                },
-                "MERGE_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS": {
-                    "csvtk": "0.31.0"
-                },
-                "MERGE_STATS_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MTMALIGN_ALIGN": {
-                    "mTM-align": 20220104,
-                    "pigz": "2.8)"
-                },
-                "MUSCLE5_ALIGN": {
-                    "muscle": 5.1,
-                    "pigz": "2.8)"
-                },
-                "PARSE_IRMSD": {
-                    "python": "3.11.0"
-                },
-                "PARSE_SIM": {
-                    "awk": "1.3.4 20200120",
-                    "cat": 8.32
-                },
-                "PIGZ_COMPRESS": {
-                    "pigz": 2.8
-                },
-                "PREPARE_SHINY": {
-                    "bash": "5.1.16 3"
-                },
-                "REGRESSIVE_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE3D_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALNCOMPARE_SP": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_ALNCOMPARE_TC": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_EXTRACTFROMPDB": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_IRMSD": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_SEQREFORMAT_SIM": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_TCS": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/seatoxin-ref",
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-                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_irmsd.irmsd:md5,e29674d0f4a89f3f6e1f40f7f75a4f27",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_irmsd.irmsd:md5,bdeb0fc4d3fa3be5149d8a9886ffdadf",
-                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,ec1e2fb7e81c8edd37c4df83d95a4061",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_irmsd.irmsd:md5,68b1bc3bbbe887161207fb530fffc30a",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_irmsd.irmsd:md5,3d931dbad8dad549599b9e9433751383",
-                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_irmsd.irmsd:md5,92d6e5e5505a37c1b3ff43f5ec44c2f1",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,93a8fcfe9d570adda45809e4622db7d9",
-                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_irmsd.irmsd:md5,db147089d52ba8f926a151ea1daa3128",
-                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
-                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_irmsd.irmsd:md5,c35bf60f4e03bbcc9a27a858cd7c0231",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_irmsd.irmsd:md5,4c676706519eb9ed4cfa0241a719a59b",
-                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_irmsd.irmsd:md5,23baa7184982ed96fc6a352479973bca",
-                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,b2667d1e27fad606a82cb3d94dc24dd0",
-                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,f65e2f5c176e9cd11a3c90c332c3069e",
-                "seatoxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.scores:md5,838956c4702953572c0d1961e56f6231",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_tcs.tcs:md5,103f33166e800cdf3451584459d70b33",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.scores:md5,f8d7715427d702530db4a57cf0b47428",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args-default_tcs.tcs:md5,103f33166e800cdf3451584459d70b33",
-                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores:md5,8014939ae866d2f917ee8c9117403f60",
-                "seatoxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs:md5,7ace90453a3d045f9e7259c98b357b15",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,581bf0c044d61dba20d2797011b1838e",
-                "seatoxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,b7fd86b2da48202a544036ad14117e3d",
-                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,0f4fc63937804b3e566d9764e94aeb02",
-                "seatoxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.scores:md5,24bc882e8126622b5c53ac5674412b0d",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_tcs.tcs:md5,fafa15d19ed5c8fea69e523de3c530ab",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,2124035ff0abf79322e7a2d3dda8c7c3",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,f351510a048a39584b4368d6bcfa504a",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores:md5,311b5e36b64f42f14f80499b2e383348",
-                "seatoxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs:md5,b678c0aaaaa9a892ad5481598587232a",
-                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores:md5,e052d797228c6b1a96581b46975cb581",
-                "seatoxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs:md5,3d19d964275c740a78ea3e9feb8fdf5f",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.scores:md5,d148aa60b22e6b3d681c04b3df63ac4d",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_tcs.tcs:md5,f471356c6fbd2ded677f446c1748c13f",
-                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,461fc9bd7f27ec576b7299129e411c13",
-                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,2ec0c2cbb381d51aadb9c4cb8df2c013",
-                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,3f2762f21c823ffae44c4dbd3f937a97",
-                "seatoxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,3520c83711dae4525482bb74472d7af5",
-                "seatoxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,6343c7cb5f42d1ef40f74c3016b75941",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,24889456acb2ca3c67cefa42c50a8b9f",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,cfda4486e3e23460b87b3ad391ae418b",
-                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,4b74c0c271882f51820654d557a698b1",
-                "seatoxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,b5b1539aa0cf75f1b079395c77523b37",
-                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.scores:md5,bed8c781ba285bc4d25939bed76efe16",
-                "seatoxin-ref_MAFFT-args-default_FOLDMASON-args-default_tcs.tcs:md5,91cdfdf774cda4cbcdc9d8129381140d",
-                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.scores:md5,890081067b40770970e894eed36df354",
-                "toxin-ref_CLUSTALO-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
-                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.scores:md5,6126690f4a22ed66df5b10689f71903a",
-                "toxin-ref_DEFAULT-args-default_CLUSTALO-args-default_tcs.tcs:md5,bd5c31b7cef9c2edf33bcd18016ec48a",
-                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.scores:md5,68cb8c807b37337497a66daa0117d5d3",
-                "toxin-ref_DEFAULT-args-default_CONSENSUS-args-default_tcs.tcs:md5,da89f674513336ed9f5c968d2fe9158a",
-                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.scores:md5,b5a18e94a7a7ca0c4060a0901f6ff363",
-                "toxin-ref_DEFAULT-args-default_FAMSA-args-default_tcs.tcs:md5,e22211ddc84faa963bde0a1d2abcce69",
-                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.scores:md5,27bcfb8bb054dbc165e3c88b16191f94",
-                "toxin-ref_DEFAULT-args-default_MAFFT-args---dpparttree_tcs.tcs:md5,4ac552a7e8d7b088eef8e38f9dce39d4",
-                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.scores:md5,1b5fec8307509fa8e4c5c86e2a2bd0d8",
-                "toxin-ref_DEFAULT-args-default_MAFFT-args-default_tcs.tcs:md5,ca27c739aacb4828317bb38cd4c58d40",
-                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.scores:md5,0c163568eed898ec7de506bf74c8bf2c",
-                "toxin-ref_DEFAULT-args-default_MAGUS-args-default_tcs.tcs:md5,88bf04af10a61ec012b0413a7989fc42",
-                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.scores:md5,d8d60ce4b7ba0e9dc34da6008022f1b7",
-                "toxin-ref_DEFAULT-args-default_MUSCLE5-args-default_tcs.tcs:md5,a192bc084687b0c1c26f2b7829ea598b",
-                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.scores:md5,5e786930c9639e3a7f7e11c741871db2",
-                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args--reg_nseq_3_tcs.tcs:md5,a8248c5e6176f498721b7b5934893428",
-                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.scores:md5,1e86882c6b31e00a8f5ad42af49fe0a4",
-                "toxin-ref_DEFAULT-args-default_REGRESSIVE-args-default_tcs.tcs:md5,9de07ce3a2ef98374cc00f8e42321223",
-                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.scores:md5,ecd8e6013889af7faf62d31997d91182",
-                "toxin-ref_DEFAULT-args-default_TCOFFEE-args-default_tcs.tcs:md5,468d3d0bbb3eb539a268e6f58ea8eebd",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.scores:md5,cfc7e04656de59ce988d33e2108a4270",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args-default_tcs.tcs:md5,8db2422c778f61445344edeffa6b4c47",
-                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.scores:md5,43b5ec2cfa24eed12d9d6cc7799fb476",
-                "toxin-ref_FAMSA-args-default_MAGUS-args-default_tcs.tcs:md5,4ca7b374940d81fb43faed7bdeb10fb7",
-                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
-                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
-                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
-                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
-                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7",
-                "seatoxin-ref_seqstats.csv:md5,e104112c929b39f43410681d8bdcb15b",
-                "toxin-ref_seqstats.csv:md5,51f477faf393c2c4a49896ef5a49374c",
-                "seatoxin-ref_full_plddt.csv:md5,a7ecccb1bd68fcd9b248b15707955e67",
-                "seatoxin-ref_CLUSTALO-args-default.dnd:md5,0b8de84bed1e52cee17f7c54e322386d",
-                "seatoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347",
-                "seatoxin-ref_FAMSA-args-default.dnd:md5,3fddb6ad96904101d105d090ddff061d",
-                "seatoxin-ref_MAFFT-args-default.dnd:md5,d4635608d06bc6856874a1a19b03f74e",
-                "toxin-ref_CLUSTALO-args-default.dnd:md5,666b7fe7ca55b2b83aef0869b4f38a66",
-                "toxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,c55917a824e99bdcb705d1cfa21bbd2b",
-                "toxin-ref_FAMSA-args-default.dnd:md5,5f47b8a4eff625b224e8a3bacb904009",
-                "toxin-ref_MAFFT-args-default.dnd:md5,f172ccdf796f111145b32d97ed8323b7"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-10T14:45:54.997896577"
-    }
-}
\ No newline at end of file
diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
deleted file mode 100644
index 4355bc03..00000000
--- a/tests/test_no_sheet.nf.test
+++ /dev/null
@@ -1,40 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_no_sheet"
-    tag "docker_singularity"
-    tag "conda"
-    profile "test_no_sheet"
-
-    test("-profile test_no_sheet - stub") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_no_sheet.nf.test.snap b/tests/test_no_sheet.nf.test.snap
deleted file mode 100644
index a53079a7..00000000
--- a/tests/test_no_sheet.nf.test.snap
+++ /dev/null
@@ -1,40 +0,0 @@
-{
-    "-profile test_no_sheet - stub": {
-        "content": [
-            3,
-            {
-                "FAMSA_ALIGN": {
-                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
-                },
-                "FAMSA_GUIDETREE": {
-                    "famsa": "2.2.2- (2022-10-09)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/setoxin-ref",
-                "alignments/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz",
-                "pipeline_info",
-                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
-                "trees",
-                "trees/setoxin-ref",
-                "trees/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd"
-            ],
-            [
-                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz:md5,9394e09dd7f576da794a74de60327324",
-                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-06T13:00:00.803514333"
-    }
-}
\ No newline at end of file
diff --git a/tests/test_pdb.nf.test b/tests/test_pdb.nf.test
deleted file mode 100644
index cbe732b8..00000000
--- a/tests/test_pdb.nf.test
+++ /dev/null
@@ -1,41 +0,0 @@
-nextflow_pipeline {
-
-    name "Test pipeline"
-    script "../main.nf"
-    tag "pipeline"
-    tag "test_pdb"
-    tag "docker_singularity"
-    tag "conda"
-    profile "test_pdb"
-
-
-    test("-profile test_pdb") {
-
-        when {
-            params {
-                outdir = "$outputDir"
-            }
-        }
-
-        then {
-            // stable_name: All files + folders in ${params.outdir}/ with a stable name
-            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
-            // stable_path: All files in ${params.outdir}/ with stable content
-            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
-            // Early failure no need to test the rest of snapshots
-            assert workflow.success
-            assertAll(
-                { assert snapshot(
-                    // Number of successful tasks
-                    workflow.trace.succeeded().size(),
-                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
-                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
-                    // All stable path name, with a relative path
-                    stable_name,
-                    // All files with stable contents
-                    stable_path
-                ).match() }
-            )
-        }
-    }
-}
diff --git a/tests/test_pdb.nf.test.snap b/tests/test_pdb.nf.test.snap
deleted file mode 100644
index a22f241f..00000000
--- a/tests/test_pdb.nf.test.snap
+++ /dev/null
@@ -1,114 +0,0 @@
-{
-    "-profile test_pdb": {
-        "content": [
-            30,
-            {
-                "FASTAVALIDATOR": {
-                    "py_fasta_validator": 0.6
-                },
-                "FOLDMASON_ALIGN": {
-                    "foldmason": "2.7bd21ed",
-                    "pigz": "2.8)"
-                },
-                "MERGE_STATS_EVAL": {
-                    "csvtk": "0.31.0"
-                },
-                "MTMALIGN_ALIGN": {
-                    "mTM-align": 20220104,
-                    "pigz": "2.8)"
-                },
-                "PARSE_IRMSD": {
-                    "python": "3.11.0"
-                },
-                "PIGZ_COMPRESS": {
-                    "pigz": 2.8
-                },
-                "PREPARE_SHINY": {
-                    "bash": "5.1.16 3"
-                },
-                "TCOFFEE3D_ALIGN": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "TCOFFEE_EXTRACTFROMPDB": {
-                    "tcoffee": "13.46.0.919e8c6b"
-                },
-                "TCOFFEE_IRMSD": {
-                    "tcoffee": "13.46.0.919e8c6b",
-                    "pigz": "2.8)"
-                },
-                "UNTAR": {
-                    "untar": 1.34
-                },
-                "Workflow": {
-                    "nf-core/multiplesequencealign": "v1.2.0dev"
-                }
-            },
-            [
-                "alignments",
-                "alignments/seatoxin-ref",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz",
-                "alignments/seatoxin-ref/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz",
-                "evaluation",
-                "evaluation/tcoffee_irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd",
-                "evaluation/tcoffee_irmsd/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd",
-                "pipeline_info",
-                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
-                "reports",
-                "reports/multiqc",
-                "reports/multiqc/multiqc_data",
-                "reports/multiqc/multiqc_data/llms-full.txt",
-                "reports/multiqc/multiqc_data/multiqc.log",
-                "reports/multiqc/multiqc_data/multiqc.parquet",
-                "reports/multiqc/multiqc_data/multiqc_citations.txt",
-                "reports/multiqc/multiqc_data/multiqc_data.json",
-                "reports/multiqc/multiqc_data/multiqc_software_versions.txt",
-                "reports/multiqc/multiqc_data/multiqc_sources.txt",
-                "reports/multiqc/multiqc_data/multiqc_summary_stats.txt",
-                "reports/multiqc/multiqc_plots",
-                "reports/multiqc/multiqc_plots/pdf",
-                "reports/multiqc/multiqc_plots/pdf/summary_stats.pdf",
-                "reports/multiqc/multiqc_plots/png",
-                "reports/multiqc/multiqc_plots/png/summary_stats.png",
-                "reports/multiqc/multiqc_plots/svg",
-                "reports/multiqc/multiqc_plots/svg/summary_stats.svg",
-                "reports/multiqc/multiqc_report.html",
-                "reports/shiny_app",
-                "reports/shiny_app/complete_summary_stats_eval_times.csv",
-                "reports/shiny_app/run.sh",
-                "reports/shiny_app/shiny_app.py",
-                "reports/shiny_app/static",
-                "reports/shiny_app/static/bootstrap.min.css",
-                "reports/shiny_app/static/favicon.ico",
-                "reports/shiny_app/static/style.css",
-                "reports/visualization",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.html",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.html",
-                "reports/visualization/seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.html",
-                "summary",
-                "summary/complete_summary_stats_eval_times.csv"
-            ],
-            [
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair.aln.gz:md5,bfec7de9e22fb892f573415feab92188",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default.fa.gz:md5,61a0244fb011d129017b7be3e35e72b2",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default.aln.gz:md5,595c2526ce7637b4630837a607914151",
-                "seatoxin-ref_DEFAULT-args-default_3DCOFFEE-args--method_TMalign_pair_irmsd.irmsd:md5,260e6ec190766c5dfc59a76a02c8efa7",
-                "seatoxin-ref_DEFAULT-args-default_FOLDMASON-args-default_irmsd.irmsd:md5,59bfba29741dcf51f5ef2589e50c746c",
-                "seatoxin-ref_DEFAULT-args-default_MTMALIGN-args-default_irmsd.irmsd:md5,380cb01e89fac0f2eae9f5418933b8e5",
-                "run.sh:md5,025ecd434fe421c6a52140fd380504f0",
-                "shiny_app.py:md5,1428dfaefa5ad41704f0c9fb7f2dab60",
-                "bootstrap.min.css:md5,d736fb89b2cd45289ab550ad0ee60347",
-                "favicon.ico:md5,6e0be9d9e071c1a5d63dfdefaa12f246",
-                "style.css:md5,97b72456bb461bd2dfc9ad9feda249d7"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.3",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-10T14:40:13.752103358"
-    }
-}
\ No newline at end of file

From 238d0c3d8fc18cee34ce8e237fe6aa26b9b21c62 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 11 Nov 2025 10:54:36 +0100
Subject: [PATCH 54/58] test runner

---
 .github/workflows/nf-test.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 82d82a3a..6be26d54 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -63,7 +63,7 @@ jobs:
     if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test
-      - runner=16cpu-linux-x64
+      - runner=32cpu-linux-x64
     strategy:
       fail-fast: false
       matrix:

From 19a334b50129f534ac06e5290fbf315629c63b3e Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 11 Nov 2025 11:00:25 +0100
Subject: [PATCH 55/58] more

---
 .github/workflows/nf-test.yml |  2 +-
 .nf-test.log                  | 27 +++++++++++----------------
 2 files changed, 12 insertions(+), 17 deletions(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 6be26d54..1c57d4ad 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -63,7 +63,7 @@ jobs:
     if: ${{ needs.nf-test-changes.outputs.total_shards != '0' }}
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test
-      - runner=32cpu-linux-x64
+      - runner=64cpu-linux-x64
     strategy:
       fail-fast: false
       matrix:
diff --git a/.nf-test.log b/.nf-test.log
index e7fe316d..6bd92b7e 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,16 +1,11 @@
-Nov-10 15:55:25.519 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-10 15:55:25.534 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-10 15:55:26.267 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-10 15:55:26.268 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-10 15:55:26.906 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.246 sec
-Nov-10 15:55:26.908 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-10 15:55:26.908 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-10 15:55:27.069 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-10 15:55:27.069 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-10 15:55:27.069 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-10 15:55:27.070 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '29aa33c1: -profile test_tiny'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
-Nov-10 15:56:29.853 [main] DEBUG com.askimed.nf.test.lang.extensions.SnapshotFile - Load snapshots from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test.snap'
-Nov-10 15:56:29.890 [main] DEBUG com.askimed.nf.test.lang.extensions.Snapshot - Snapshots '-profile test_tiny' match.
-Nov-10 15:56:29.891 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '29aa33c1: -profile test_tiny' finished. status: PASSED
-Nov-10 15:56:29.892 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: true, skipped tests: false, failed tests: false
-Nov-10 15:56:29.892 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 0 tests failed. Done!
+Nov-11 10:55:00.052 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-11 10:55:00.078 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-11 10:55:01.388 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-11 10:55:01.390 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-11 10:55:02.706 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.753 sec
+Nov-11 10:55:02.708 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-11 10:55:02.708 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '3b90429f: -profile test'. type: com.askimed.nf.test.lang.pipeline.PipelineTest

From 555e443bef41b4682890dc153fc3c18467089059 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 11 Nov 2025 11:04:37 +0100
Subject: [PATCH 56/58] more

---
 tests/test_no_sheet.nf.test      | 40 ++++++++++++++++++++++++++++++++
 tests/test_no_sheet.nf.test.snap | 40 ++++++++++++++++++++++++++++++++
 2 files changed, 80 insertions(+)
 create mode 100644 tests/test_no_sheet.nf.test
 create mode 100644 tests/test_no_sheet.nf.test.snap

diff --git a/tests/test_no_sheet.nf.test b/tests/test_no_sheet.nf.test
new file mode 100644
index 00000000..4355bc03
--- /dev/null
+++ b/tests/test_no_sheet.nf.test
@@ -0,0 +1,40 @@
+nextflow_pipeline {
+
+    name "Test pipeline"
+    script "../main.nf"
+    tag "pipeline"
+    tag "test_no_sheet"
+    tag "docker_singularity"
+    tag "conda"
+    profile "test_no_sheet"
+
+    test("-profile test_no_sheet - stub") {
+
+        when {
+            params {
+                outdir = "$outputDir"
+            }
+        }
+
+        then {
+            // stable_name: All files + folders in ${params.outdir}/ with a stable name
+            def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
+            // stable_path: All files in ${params.outdir}/ with stable content
+            def stable_path = getAllFilesFromDir(params.outdir, ignoreFile: 'tests/.nftignore')
+            // Early failure no need to test the rest of snapshots
+            assert workflow.success
+            assertAll(
+                { assert snapshot(
+                    // Number of successful tasks
+                    workflow.trace.succeeded().size(),
+                    // pipeline versions.yml file for multiqc from which Nextflow version is removed because we test pipelines on multiple Nextflow versions
+                    removeNextflowVersion("$outputDir/pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml"),
+                    // All stable path name, with a relative path
+                    stable_name,
+                    // All files with stable contents
+                    stable_path
+                ).match() }
+            )
+        }
+    }
+}
diff --git a/tests/test_no_sheet.nf.test.snap b/tests/test_no_sheet.nf.test.snap
new file mode 100644
index 00000000..a53079a7
--- /dev/null
+++ b/tests/test_no_sheet.nf.test.snap
@@ -0,0 +1,40 @@
+{
+    "-profile test_no_sheet - stub": {
+        "content": [
+            3,
+            {
+                "FAMSA_ALIGN": {
+                    "famsa": "2.4.1-45c9b2b (2025-05-09)"
+                },
+                "FAMSA_GUIDETREE": {
+                    "famsa": "2.2.2- (2022-10-09)"
+                },
+                "UNTAR": {
+                    "untar": 1.34
+                },
+                "Workflow": {
+                    "nf-core/multiplesequencealign": "v1.2.0dev"
+                }
+            },
+            [
+                "alignments",
+                "alignments/setoxin-ref",
+                "alignments/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz",
+                "pipeline_info",
+                "pipeline_info/nf_core_multiplesequencealign_software_mqc_versions.yml",
+                "trees",
+                "trees/setoxin-ref",
+                "trees/setoxin-ref/setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd"
+            ],
+            [
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree_FAMSA-args--refine_mode_on.aln.gz:md5,9394e09dd7f576da794a74de60327324",
+                "setoxin-ref_FAMSA-args--gt_upgma_-medoidtree.dnd:md5,2f40d5dd57a0072732428ba94ec89347"
+            ]
+        ],
+        "meta": {
+            "nf-test": "0.9.3",
+            "nextflow": "25.10.0"
+        },
+        "timestamp": "2025-11-06T13:00:00.803514333"
+    }
+}
\ No newline at end of file

From 6c5e59235e832fbffb65ca10366879e31e1e3588 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Tue, 11 Nov 2025 11:12:03 +0100
Subject: [PATCH 57/58] more

---
 .github/workflows/nf-test.yml |  1 +
 .nf-test.log                  | 22 +++++++++++-----------
 2 files changed, 12 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/nf-test.yml b/.github/workflows/nf-test.yml
index 1c57d4ad..da162482 100644
--- a/.github/workflows/nf-test.yml
+++ b/.github/workflows/nf-test.yml
@@ -64,6 +64,7 @@ jobs:
     runs-on: # use self-hosted runners
       - runs-on=${{ github.run_id }}-nf-test
       - runner=64cpu-linux-x64
+      - volume=80gb
     strategy:
       fail-fast: false
       matrix:
diff --git a/.nf-test.log b/.nf-test.log
index 6bd92b7e..80a748de 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -1,11 +1,11 @@
-Nov-11 10:55:00.052 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
-Nov-11 10:55:00.078 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
-Nov-11 10:55:01.388 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
-Nov-11 10:55:01.390 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
-Nov-11 10:55:02.706 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 54 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.753 sec
-Nov-11 10:55:02.708 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
-Nov-11 10:55:02.708 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
-Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
-Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
-Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
-Nov-11 10:55:02.904 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '3b90429f: -profile test'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-11 11:11:46.768 [main] INFO  com.askimed.nf.test.App - nf-test 0.9.3
+Nov-11 11:11:46.790 [main] INFO  com.askimed.nf.test.App - Arguments: [test, tests/default.nf.test, --update-snapshot, --profile, +docker]
+Nov-11 11:11:47.824 [main] INFO  com.askimed.nf.test.App - Nextflow Version: 25.10.0
+Nov-11 11:11:47.827 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Load config from file /home/luisasantus/Desktop/multiplesequencealign/nf-test.config...
+Nov-11 11:11:48.729 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Loaded 56 files from directory /home/luisasantus/Desktop/multiplesequencealign in 0.357 sec
+Nov-11 11:11:48.730 [main] INFO  com.askimed.nf.test.lang.dependencies.DependencyResolver - Found 1 files containing tests.
+Nov-11 11:11:48.731 [main] DEBUG com.askimed.nf.test.lang.dependencies.DependencyResolver - Found files: [/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test]
+Nov-11 11:11:48.966 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand - Found 1 tests to execute.
+Nov-11 11:11:48.968 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
+Nov-11 11:11:48.968 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
+Nov-11 11:11:48.968 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '3b90429f: -profile test'. type: com.askimed.nf.test.lang.pipeline.PipelineTest

From c9c4a79c76cc1cfe97220377930a6e742c236af0 Mon Sep 17 00:00:00 2001
From: luisas <luisa.santus95@gmail.com>
Date: Wed, 12 Nov 2025 17:00:33 +0100
Subject: [PATCH 58/58] Update learnmsa for testng

---
 .nf-test.log                           | 33 ++++++++++++++++++++++++++
 assets/toolsheet.csv                   |  4 ++--
 modules/nf-core/learnmsa/align/main.nf |  5 +++-
 3 files changed, 39 insertions(+), 3 deletions(-)

diff --git a/.nf-test.log b/.nf-test.log
index 80a748de..997e7b28 100644
--- a/.nf-test.log
+++ b/.nf-test.log
@@ -9,3 +9,36 @@ Nov-11 11:11:48.966 [main] INFO  com.askimed.nf.test.commands.RunTestsCommand -
 Nov-11 11:11:48.968 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Started test plan
 Nov-11 11:11:48.968 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Running testsuite 'Test pipeline' from file '/home/luisasantus/Desktop/multiplesequencealign/tests/default.nf.test'.
 Nov-11 11:11:48.968 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Run test '3b90429f: -profile test'. type: com.askimed.nf.test.lang.pipeline.PipelineTest
+Nov-11 11:13:38.210 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Test '3b90429f: -profile test' finished. status: FAILED
+org.codehaus.groovy.runtime.powerassert.PowerAssertionError: assert workflow.success
+       |        |
+       workflow false
+	at org.codehaus.groovy.runtime.InvokerHelper.assertFailed(InvokerHelper.java:432)
+	at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.assertFailed(ScriptBytecodeAdapter.java:670)
+	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test:25)
+	at default_nf$_run_closure1$_closure2$_closure4.doCall(default.nf.test)
+	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
+	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
+	at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:107)
+	at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
+	at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:274)
+	at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1030)
+	at groovy.lang.Closure.call(Closure.java:427)
+	at groovy.lang.Closure.call(Closure.java:406)
+	at com.askimed.nf.test.lang.TestCode.execute(TestCode.java:16)
+	at com.askimed.nf.test.lang.pipeline.PipelineTest.execute(PipelineTest.java:135)
+	at com.askimed.nf.test.core.TestExecutionEngine.execute(TestExecutionEngine.java:172)
+	at com.askimed.nf.test.commands.RunTestsCommand.execute(RunTestsCommand.java:322)
+	at com.askimed.nf.test.commands.AbstractCommand.call(AbstractCommand.java:43)
+	at com.askimed.nf.test.commands.AbstractCommand.call(AbstractCommand.java:18)
+	at picocli.CommandLine.executeUserObject(CommandLine.java:1953)
+	at picocli.CommandLine.access$1300(CommandLine.java:145)
+	at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2352)
+	at picocli.CommandLine$RunLast.handle(CommandLine.java:2346)
+	at picocli.CommandLine$RunLast.handle(CommandLine.java:2311)
+	at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
+	at picocli.CommandLine.execute(CommandLine.java:2078)
+	at com.askimed.nf.test.App.run(App.java:39)
+	at com.askimed.nf.test.App.main(App.java:46)
+Nov-11 11:13:38.219 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Testsuite 'Test pipeline' finished. snapshot file: false, skipped tests: false, failed tests: true
+Nov-11 11:13:38.220 [main] INFO  com.askimed.nf.test.core.TestExecutionEngine - Executed 1 tests. 1 tests failed. Done!
diff --git a/assets/toolsheet.csv b/assets/toolsheet.csv
index ac21c853..d606a017 100644
--- a/assets/toolsheet.csv
+++ b/assets/toolsheet.csv
@@ -1,3 +1,3 @@
 tree,args_tree,aligner,args_aligner
-FAMSA,,FAMSA,
-,,MAFFT,--dpparttree
+,,FAMSA,
+,,LEARNMSA,"--use_language_model"
\ No newline at end of file
diff --git a/modules/nf-core/learnmsa/align/main.nf b/modules/nf-core/learnmsa/align/main.nf
index 7e7ecd25..082cdc93 100644
--- a/modules/nf-core/learnmsa/align/main.nf
+++ b/modules/nf-core/learnmsa/align/main.nf
@@ -1,6 +1,6 @@
 process LEARNMSA_ALIGN {
     tag "$meta.id"
-    label 'process_medium'
+    label 'process_gpu'
     container "registry.hub.docker.com/felbecker/learnmsa:2.0.14"
 
     input:
@@ -20,6 +20,9 @@ process LEARNMSA_ALIGN {
         error("LearnMSA align module does not support Conda. Please use Docker / Singularity / Podman instead.")
     }
     """
+    export MPLCONFIGDIR="./.config/matplotlib"
+    mkdir -p \$MPLCONFIGDIR
+
     learnMSA \\
         -i $fasta \\
         -o "${prefix}.aln" \\