Skip to content

Commit 0ca7f10

Browse files
author
Tatiana Gelaf Romer
committed
Update snapshots
1 parent 0029ddb commit 0ca7f10

File tree

4 files changed

+12
-171
lines changed

4 files changed

+12
-171
lines changed

tests/main_pipeline_cellranger.nf.test.snap

Lines changed: 3 additions & 51 deletions
Original file line numberDiff line numberDiff line change
@@ -262,56 +262,8 @@
262262
"multiqc/multiqc_data/multiqc_sources.txt",
263263
"multiqc/multiqc_plots",
264264
"multiqc/multiqc_plots/pdf",
265-
"multiqc/multiqc_plots/pdf/cellranger-count-stats-table.pdf",
266-
"multiqc/multiqc_plots/pdf/cellranger-count-warnings-table.pdf",
267-
"multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf",
268-
"multiqc/multiqc_plots/pdf/fastqc_adapter_content_plot.pdf",
269-
"multiqc/multiqc_plots/pdf/fastqc_per_base_n_content_plot.pdf",
270-
"multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
271-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
272-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
273-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
274-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
275-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
276-
"multiqc/multiqc_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
277-
"multiqc/multiqc_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
278-
"multiqc/multiqc_plots/pdf/mqc_cellranger_count_bc_knee.pdf",
279-
"multiqc/multiqc_plots/pdf/mqc_cellranger_count_genesXcell.pdf",
280-
"multiqc/multiqc_plots/pdf/mqc_cellranger_count_saturation.pdf",
281265
"multiqc/multiqc_plots/png",
282-
"multiqc/multiqc_plots/png/cellranger-count-stats-table.png",
283-
"multiqc/multiqc_plots/png/cellranger-count-warnings-table.png",
284-
"multiqc/multiqc_plots/png/fastqc-status-check-heatmap.png",
285-
"multiqc/multiqc_plots/png/fastqc_adapter_content_plot.png",
286-
"multiqc/multiqc_plots/png/fastqc_per_base_n_content_plot.png",
287-
"multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png",
288-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
289-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
290-
"multiqc/multiqc_plots/png/fastqc_per_sequence_quality_scores_plot.png",
291-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-cnt.png",
292-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-pct.png",
293-
"multiqc/multiqc_plots/png/fastqc_sequence_duplication_levels_plot.png",
294-
"multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png",
295-
"multiqc/multiqc_plots/png/mqc_cellranger_count_bc_knee.png",
296-
"multiqc/multiqc_plots/png/mqc_cellranger_count_genesXcell.png",
297-
"multiqc/multiqc_plots/png/mqc_cellranger_count_saturation.png",
298266
"multiqc/multiqc_plots/svg",
299-
"multiqc/multiqc_plots/svg/cellranger-count-stats-table.svg",
300-
"multiqc/multiqc_plots/svg/cellranger-count-warnings-table.svg",
301-
"multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg",
302-
"multiqc/multiqc_plots/svg/fastqc_adapter_content_plot.svg",
303-
"multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg",
304-
"multiqc/multiqc_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
305-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
306-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
307-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
308-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
309-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-pct.svg",
310-
"multiqc/multiqc_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
311-
"multiqc/multiqc_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
312-
"multiqc/multiqc_plots/svg/mqc_cellranger_count_bc_knee.svg",
313-
"multiqc/multiqc_plots/svg/mqc_cellranger_count_genesXcell.svg",
314-
"multiqc/multiqc_plots/svg/mqc_cellranger_count_saturation.svg",
315267
"multiqc/multiqc_report.html",
316268
"pipeline_info",
317269
"pipeline_info/nf_core_scrnaseq_software_mqc_versions.yml"
@@ -380,9 +332,9 @@
380332
]
381333
],
382334
"meta": {
383-
"nf-test": "0.9.2",
384-
"nextflow": "25.04.6"
335+
"nf-test": "0.9.3",
336+
"nextflow": "25.10.0"
385337
},
386-
"timestamp": "2025-10-23T19:11:11.981129882"
338+
"timestamp": "2025-10-30T14:05:45.462689417"
387339
}
388340
}

tests/main_pipeline_cellrangerarc.nf.test.snap

Lines changed: 3 additions & 39 deletions
Original file line numberDiff line numberDiff line change
@@ -182,44 +182,8 @@
182182
"multiqc/multiqc_data/multiqc_sources.txt",
183183
"multiqc/multiqc_plots",
184184
"multiqc/multiqc_plots/pdf",
185-
"multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf",
186-
"multiqc/multiqc_plots/pdf/fastqc_adapter_content_plot.pdf",
187-
"multiqc/multiqc_plots/pdf/fastqc_overrepresented_sequences_plot.pdf",
188-
"multiqc/multiqc_plots/pdf/fastqc_per_base_n_content_plot.pdf",
189-
"multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
190-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
191-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
192-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
193-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
194-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
195-
"multiqc/multiqc_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
196-
"multiqc/multiqc_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
197185
"multiqc/multiqc_plots/png",
198-
"multiqc/multiqc_plots/png/fastqc-status-check-heatmap.png",
199-
"multiqc/multiqc_plots/png/fastqc_adapter_content_plot.png",
200-
"multiqc/multiqc_plots/png/fastqc_overrepresented_sequences_plot.png",
201-
"multiqc/multiqc_plots/png/fastqc_per_base_n_content_plot.png",
202-
"multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png",
203-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
204-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
205-
"multiqc/multiqc_plots/png/fastqc_per_sequence_quality_scores_plot.png",
206-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-cnt.png",
207-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-pct.png",
208-
"multiqc/multiqc_plots/png/fastqc_sequence_duplication_levels_plot.png",
209-
"multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png",
210186
"multiqc/multiqc_plots/svg",
211-
"multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg",
212-
"multiqc/multiqc_plots/svg/fastqc_adapter_content_plot.svg",
213-
"multiqc/multiqc_plots/svg/fastqc_overrepresented_sequences_plot.svg",
214-
"multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg",
215-
"multiqc/multiqc_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
216-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
217-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
218-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
219-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
220-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-pct.svg",
221-
"multiqc/multiqc_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
222-
"multiqc/multiqc_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
223187
"multiqc/multiqc_report.html",
224188
"pipeline_info",
225189
"pipeline_info/nf_core_scrnaseq_software_mqc_versions.yml"
@@ -283,9 +247,9 @@
283247
]
284248
],
285249
"meta": {
286-
"nf-test": "0.9.2",
287-
"nextflow": "25.04.6"
250+
"nf-test": "0.9.3",
251+
"nextflow": "25.10.0"
288252
},
289-
"timestamp": "2025-10-23T19:10:33.168539516"
253+
"timestamp": "2025-10-30T14:13:47.05850975"
290254
}
291255
}

tests/main_pipeline_kallisto.nf.test.snap

Lines changed: 3 additions & 36 deletions
Original file line numberDiff line numberDiff line change
@@ -120,41 +120,8 @@
120120
"multiqc/multiqc_data/multiqc_sources.txt",
121121
"multiqc/multiqc_plots",
122122
"multiqc/multiqc_plots/pdf",
123-
"multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf",
124-
"multiqc/multiqc_plots/pdf/fastqc_adapter_content_plot.pdf",
125-
"multiqc/multiqc_plots/pdf/fastqc_per_base_n_content_plot.pdf",
126-
"multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
127-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
128-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
129-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
130-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
131-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
132-
"multiqc/multiqc_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
133-
"multiqc/multiqc_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
134123
"multiqc/multiqc_plots/png",
135-
"multiqc/multiqc_plots/png/fastqc-status-check-heatmap.png",
136-
"multiqc/multiqc_plots/png/fastqc_adapter_content_plot.png",
137-
"multiqc/multiqc_plots/png/fastqc_per_base_n_content_plot.png",
138-
"multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png",
139-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
140-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
141-
"multiqc/multiqc_plots/png/fastqc_per_sequence_quality_scores_plot.png",
142-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-cnt.png",
143-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-pct.png",
144-
"multiqc/multiqc_plots/png/fastqc_sequence_duplication_levels_plot.png",
145-
"multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png",
146124
"multiqc/multiqc_plots/svg",
147-
"multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg",
148-
"multiqc/multiqc_plots/svg/fastqc_adapter_content_plot.svg",
149-
"multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg",
150-
"multiqc/multiqc_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
151-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
152-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
153-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
154-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
155-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-pct.svg",
156-
"multiqc/multiqc_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
157-
"multiqc/multiqc_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
158125
"multiqc/multiqc_report.html",
159126
"pipeline_info",
160127
"pipeline_info/nf_core_scrnaseq_software_mqc_versions.yml"
@@ -209,9 +176,9 @@
209176
]
210177
],
211178
"meta": {
212-
"nf-test": "0.9.2",
213-
"nextflow": "25.04.6"
179+
"nf-test": "0.9.3",
180+
"nextflow": "25.10.0"
214181
},
215-
"timestamp": "2025-10-23T19:08:08.954153394"
182+
"timestamp": "2025-10-30T14:16:21.07763953"
216183
}
217184
}

tests/main_pipeline_star.nf.test.snap

Lines changed: 3 additions & 45 deletions
Original file line numberDiff line numberDiff line change
@@ -60,50 +60,8 @@
6060
"multiqc/multiqc_data/star_summary_table.txt",
6161
"multiqc/multiqc_plots",
6262
"multiqc/multiqc_plots/pdf",
63-
"multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf",
64-
"multiqc/multiqc_plots/pdf/fastqc_adapter_content_plot.pdf",
65-
"multiqc/multiqc_plots/pdf/fastqc_per_base_n_content_plot.pdf",
66-
"multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
67-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
68-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
69-
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
70-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
71-
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
72-
"multiqc/multiqc_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
73-
"multiqc/multiqc_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
74-
"multiqc/multiqc_plots/pdf/star_alignment_plot-cnt.pdf",
75-
"multiqc/multiqc_plots/pdf/star_alignment_plot-pct.pdf",
76-
"multiqc/multiqc_plots/pdf/star_summary_table.pdf",
7763
"multiqc/multiqc_plots/png",
78-
"multiqc/multiqc_plots/png/fastqc-status-check-heatmap.png",
79-
"multiqc/multiqc_plots/png/fastqc_adapter_content_plot.png",
80-
"multiqc/multiqc_plots/png/fastqc_per_base_n_content_plot.png",
81-
"multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png",
82-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
83-
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
84-
"multiqc/multiqc_plots/png/fastqc_per_sequence_quality_scores_plot.png",
85-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-cnt.png",
86-
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-pct.png",
87-
"multiqc/multiqc_plots/png/fastqc_sequence_duplication_levels_plot.png",
88-
"multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png",
89-
"multiqc/multiqc_plots/png/star_alignment_plot-cnt.png",
90-
"multiqc/multiqc_plots/png/star_alignment_plot-pct.png",
91-
"multiqc/multiqc_plots/png/star_summary_table.png",
9264
"multiqc/multiqc_plots/svg",
93-
"multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg",
94-
"multiqc/multiqc_plots/svg/fastqc_adapter_content_plot.svg",
95-
"multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg",
96-
"multiqc/multiqc_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
97-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
98-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
99-
"multiqc/multiqc_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
100-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
101-
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-pct.svg",
102-
"multiqc/multiqc_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
103-
"multiqc/multiqc_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
104-
"multiqc/multiqc_plots/svg/star_alignment_plot-cnt.svg",
105-
"multiqc/multiqc_plots/svg/star_alignment_plot-pct.svg",
106-
"multiqc/multiqc_plots/svg/star_summary_table.svg",
10765
"multiqc/multiqc_report.html",
10866
"pipeline_info",
10967
"pipeline_info/nf_core_scrnaseq_software_mqc_versions.yml",
@@ -229,9 +187,9 @@
229187
]
230188
],
231189
"meta": {
232-
"nf-test": "0.9.2",
233-
"nextflow": "25.04.6"
190+
"nf-test": "0.9.3",
191+
"nextflow": "25.10.0"
234192
},
235-
"timestamp": "2025-10-23T19:11:01.001258"
193+
"timestamp": "2025-10-30T14:22:04.512298845"
236194
}
237195
}

0 commit comments

Comments
 (0)