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Commit 81cf3be

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author
Tatiana Gelaf Romer
committed
Update snapshots
1 parent 7bc4502 commit 81cf3be

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+105
-319
lines changed

‎conf/modules.config‎

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enabled: false
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]
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}
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executor = 'slurm'
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}
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if(params.aligner == "cellranger") {

‎conf/test.config‎

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memory: '15.GB',
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time: '1.h'
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]
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executor = 'slurm'
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}
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params {

‎conf/test_cellranger_multi.config‎

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memory: '15.GB',
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time: '1.h'
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]
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executor = 'slurm'
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}
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// shared across profiles

‎tests/main_pipeline_cellranger.nf.test.snap‎

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"multiqc/multiqc_data/multiqc_sources.txt",
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"multiqc/multiqc_plots",
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"multiqc/multiqc_plots/pdf",
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"multiqc/multiqc_plots/pdf/cellranger-count-stats-table.pdf",
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"multiqc/multiqc_plots/pdf/cellranger-count-warnings-table.pdf",
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"multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_adapter_content_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_base_n_content_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
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"multiqc/multiqc_plots/pdf/mqc_cellranger_count_bc_knee.pdf",
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"multiqc/multiqc_plots/pdf/mqc_cellranger_count_genesXcell.pdf",
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"multiqc/multiqc_plots/pdf/mqc_cellranger_count_saturation.pdf",
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"multiqc/multiqc_plots/png",
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"multiqc/multiqc_plots/png/cellranger-count-stats-table.png",
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"multiqc/multiqc_plots/png/cellranger-count-warnings-table.png",
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"multiqc/multiqc_plots/png/fastqc-status-check-heatmap.png",
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"multiqc/multiqc_plots/png/fastqc_adapter_content_plot.png",
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"multiqc/multiqc_plots/png/fastqc_per_base_n_content_plot.png",
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"multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png",
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"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
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"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
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"multiqc/multiqc_plots/png/fastqc_per_sequence_quality_scores_plot.png",
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"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-cnt.png",
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"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-pct.png",
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"multiqc/multiqc_plots/png/fastqc_sequence_duplication_levels_plot.png",
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"multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png",
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"multiqc/multiqc_plots/png/mqc_cellranger_count_bc_knee.png",
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"multiqc/multiqc_plots/png/mqc_cellranger_count_genesXcell.png",
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"multiqc/multiqc_plots/png/mqc_cellranger_count_saturation.png",
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"multiqc/multiqc_plots/svg",
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"multiqc/multiqc_plots/svg/cellranger-count-stats-table.svg",
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"multiqc/multiqc_plots/svg/cellranger-count-warnings-table.svg",
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"multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg",
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"multiqc/multiqc_plots/svg/fastqc_adapter_content_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
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"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-pct.svg",
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"multiqc/multiqc_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
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"multiqc/multiqc_plots/svg/mqc_cellranger_count_bc_knee.svg",
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"multiqc/multiqc_plots/svg/mqc_cellranger_count_genesXcell.svg",
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"multiqc/multiqc_plots/svg/mqc_cellranger_count_saturation.svg",
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"multiqc/multiqc_report.html",
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"pipeline_info",
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"pipeline_info/nf_core_scrnaseq_software_mqc_versions.yml"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-10-23T19:11:11.981129882"
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"timestamp": "2025-10-30T14:05:45.462689417"
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}
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}

‎tests/main_pipeline_cellrangerarc.nf.test.snap‎

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"multiqc/multiqc_data/multiqc_sources.txt",
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"multiqc/multiqc_plots",
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"multiqc/multiqc_plots/pdf",
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"multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_adapter_content_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_overrepresented_sequences_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_base_n_content_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
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"multiqc/multiqc_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
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"multiqc/multiqc_plots/png",
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"multiqc/multiqc_plots/png/fastqc-status-check-heatmap.png",
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"multiqc/multiqc_plots/png/fastqc_adapter_content_plot.png",
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"multiqc/multiqc_plots/png/fastqc_overrepresented_sequences_plot.png",
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"multiqc/multiqc_plots/png/fastqc_per_base_n_content_plot.png",
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"multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png",
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"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
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"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
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"multiqc/multiqc_plots/png/fastqc_per_sequence_quality_scores_plot.png",
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"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-cnt.png",
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"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-pct.png",
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"multiqc/multiqc_plots/png/fastqc_sequence_duplication_levels_plot.png",
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"multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png",
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"multiqc/multiqc_plots/svg",
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"multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg",
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"multiqc/multiqc_plots/svg/fastqc_adapter_content_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_overrepresented_sequences_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
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"multiqc/multiqc_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
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"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-pct.svg",
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"multiqc/multiqc_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
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"multiqc/multiqc_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
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"multiqc/multiqc_report.html",
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"pipeline_info",
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"pipeline_info/nf_core_scrnaseq_software_mqc_versions.yml"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-10-23T19:10:33.168539516"
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"timestamp": "2025-10-30T14:13:47.05850975"
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}
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}

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