Merge remote-tracking branch 'upstream/main' into fix-ci

Author: jorisvandenbossche

.github/actions/setup-conda/action.yml

@@ -9,6 +9,8 @@ runs:
     - name: Install ${{ inputs.environment-file }}
       uses: mamba-org/setup-micromamba@v1
       with:
+        # Pinning to avoid 2.0 failures
+        micromamba-version: '1.5.10-0'
         environment-file: ${{ inputs.environment-file }}
         environment-name: test
         condarc-file: ci/.condarc

.github/workflows/code-checks.yml

@@ -4,11 +4,11 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
 
 env:
   ENV_FILE: environment.yml

.github/workflows/docbuild-and-upload.yml

@@ -4,13 +4,13 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
     tags:
       - '*'
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
 
 env:
   ENV_FILE: environment.yml

.github/workflows/package-checks.yml

@@ -4,11 +4,11 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
     types: [ labeled, opened, synchronize, reopened ]
 
 permissions:
@@ -67,7 +67,7 @@ jobs:
           fetch-depth: 0
 
       - name: Set up Python
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@v2
         with:
           environment-name: recipe-test
           create-args: >-

.github/workflows/unit-tests.yml

@@ -4,11 +4,11 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
     paths-ignore:
       - "doc/**"
       - "web/**"

.github/workflows/wheels.yml

@@ -156,7 +156,7 @@ jobs:
         run: echo "sdist_name=$(cd ./dist && ls -d */)" >> "$GITHUB_ENV"
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.20.0
+        uses: pypa/cibuildwheel@v2.21.3
         with:
          package-dir: ./dist/${{ startsWith(matrix.buildplat[1], 'macosx') && env.sdist_name || needs.build_sdist.outputs.sdist_file }}
         env:
@@ -165,7 +165,7 @@ jobs:
           CIBW_PLATFORM: ${{ matrix.buildplat[1] == 'pyodide_wasm32' && 'pyodide' || 'auto' }}
 
       - name: Set up Python
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@v2
         with:
           environment-name: wheel-env
           # Use a fixed Python, since we might have an unreleased Python not

.pre-commit-config.yaml

@@ -2,9 +2,9 @@ minimum_pre_commit_version: 2.15.0
 exclude: ^LICENSES/|\.(html|csv|svg)$
 # reserve "manual" for relatively slow hooks which we still want to run in CI
 default_stages: [
-    commit,
-    merge-commit,
-    push,
+    pre-commit,
+    pre-merge-commit,
+    pre-push,
     prepare-commit-msg,
     commit-msg,
     post-checkout,
@@ -19,7 +19,7 @@ ci:
     skip: [pyright, mypy]
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.5.0
+    rev: v0.6.9
     hooks:
     -   id: ruff
         args: [--exit-non-zero-on-fix]
@@ -34,7 +34,7 @@ repos:
     -   id: ruff-format
         exclude: ^scripts|^pandas/tests/frame/test_query_eval.py
 -   repo: https://github.com/jendrikseipp/vulture
-    rev: 'v2.11'
+    rev: 'v2.13'
     hooks:
       - id: vulture
         entry: python scripts/run_vulture.py
@@ -52,7 +52,7 @@ repos:
     -   id: cython-lint
     -   id: double-quote-cython-strings
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
     -   id: check-case-conflict
     -   id: check-toml
@@ -74,7 +74,7 @@ repos:
     hooks:
     -   id: isort
 -   repo: https://github.com/asottile/pyupgrade
-    rev: v3.16.0
+    rev: v3.17.0
     hooks:
     -   id: pyupgrade
         args: [--py310-plus]
@@ -90,12 +90,12 @@ repos:
         types: [text]  # overwrite types: [rst]
         types_or: [python, rst]
 -   repo: https://github.com/sphinx-contrib/sphinx-lint
-    rev: v0.9.1
+    rev: v1.0.0
     hooks:
     - id: sphinx-lint
       args: ["--enable", "all", "--disable", "line-too-long"]
 -   repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v18.1.8
+    rev: v19.1.1
     hooks:
     - id: clang-format
       files: ^pandas/_libs/src|^pandas/_libs/include
@@ -112,7 +112,7 @@ repos:
         types: [python]
         stages: [manual]
         additional_dependencies: &pyright_dependencies
-        - [email protected].352
+        - [email protected].383
     -   id: pyright
         # note: assumes python env is setup and activated
         name: pyright reportGeneralTypeIssues

ci/code_checks.sh

@@ -73,136 +73,76 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.Period.freq GL08" \
         -i "pandas.Period.ordinal GL08" \
         -i "pandas.RangeIndex.from_range PR01,SA01" \
-        -i "pandas.Series.cat.add_categories PR01,PR02" \
-        -i "pandas.Series.cat.as_ordered PR01" \
-        -i "pandas.Series.cat.as_unordered PR01" \
-        -i "pandas.Series.cat.remove_categories PR01,PR02" \
-        -i "pandas.Series.cat.remove_unused_categories PR01" \
-        -i "pandas.Series.cat.rename_categories PR01,PR02" \
-        -i "pandas.Series.cat.reorder_categories PR01,PR02" \
-        -i "pandas.Series.cat.set_categories PR01,PR02" \
-        -i "pandas.Series.dt.as_unit PR01,PR02" \
-        -i "pandas.Series.dt.ceil PR01,PR02" \
-        -i "pandas.Series.dt.day_name PR01,PR02" \
-        -i "pandas.Series.dt.floor PR01,PR02" \
         -i "pandas.Series.dt.freq GL08" \
-        -i "pandas.Series.dt.month_name PR01,PR02" \
-        -i "pandas.Series.dt.normalize PR01" \
-        -i "pandas.Series.dt.round PR01,PR02" \
-        -i "pandas.Series.dt.strftime PR01,PR02" \
-        -i "pandas.Series.dt.to_period PR01,PR02" \
-        -i "pandas.Series.dt.total_seconds PR01" \
-        -i "pandas.Series.dt.tz_convert PR01,PR02" \
-        -i "pandas.Series.dt.tz_localize PR01,PR02" \
         -i "pandas.Series.dt.unit GL08" \
         -i "pandas.Series.pad PR01,SA01" \
-        -i "pandas.Series.sparse.from_coo PR07,SA01" \
-        -i "pandas.Series.sparse.npoints SA01" \
         -i "pandas.Timedelta.max PR02" \
         -i "pandas.Timedelta.min PR02" \
         -i "pandas.Timedelta.resolution PR02" \
-        -i "pandas.TimedeltaIndex.to_pytimedelta RT03,SA01" \
         -i "pandas.Timestamp.max PR02" \
         -i "pandas.Timestamp.min PR02" \
         -i "pandas.Timestamp.nanosecond GL08" \
         -i "pandas.Timestamp.resolution PR02" \
         -i "pandas.Timestamp.tzinfo GL08" \
         -i "pandas.Timestamp.year GL08" \
-        -i "pandas.api.types.is_dict_like PR07,SA01" \
-        -i "pandas.api.types.is_file_like PR07,SA01" \
-        -i "pandas.api.types.is_float PR01,SA01" \
-        -i "pandas.api.types.is_hashable PR01,RT03,SA01" \
-        -i "pandas.api.types.is_integer PR01,SA01" \
-        -i "pandas.api.types.is_iterator PR07,SA01" \
-        -i "pandas.api.types.is_named_tuple PR07,SA01" \
-        -i "pandas.api.types.is_re PR07,SA01" \
         -i "pandas.api.types.is_re_compilable PR07,SA01" \
         -i "pandas.api.types.pandas_dtype PR07,RT03,SA01" \
         -i "pandas.arrays.ArrowExtensionArray PR07,SA01" \
-        -i "pandas.arrays.DatetimeArray SA01" \
         -i "pandas.arrays.IntegerArray SA01" \
         -i "pandas.arrays.IntervalArray.left SA01" \
         -i "pandas.arrays.IntervalArray.length SA01" \
         -i "pandas.arrays.IntervalArray.right SA01" \
         -i "pandas.arrays.NumpyExtensionArray SA01" \
         -i "pandas.arrays.SparseArray PR07,SA01" \
         -i "pandas.arrays.TimedeltaArray PR07,SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.__iter__ RT03,SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.agg RT03" \
-        -i "pandas.core.groupby.DataFrameGroupBy.aggregate RT03" \
         -i "pandas.core.groupby.DataFrameGroupBy.boxplot PR07,RT03,SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.get_group RT03,SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.groups SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.indices SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.nth PR02" \
         -i "pandas.core.groupby.DataFrameGroupBy.nunique SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.ohlc SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.plot PR02" \
         -i "pandas.core.groupby.DataFrameGroupBy.sem SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.__iter__ RT03,SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.agg RT03" \
-        -i "pandas.core.groupby.SeriesGroupBy.aggregate RT03" \
         -i "pandas.core.groupby.SeriesGroupBy.get_group RT03,SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.groups SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.indices SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.is_monotonic_decreasing SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.is_monotonic_increasing SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.nth PR02" \
-        -i "pandas.core.groupby.SeriesGroupBy.ohlc SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.plot PR02" \
         -i "pandas.core.groupby.SeriesGroupBy.sem SA01" \
-        -i "pandas.core.resample.Resampler.__iter__ RT03,SA01" \
         -i "pandas.core.resample.Resampler.get_group RT03,SA01" \
         -i "pandas.core.resample.Resampler.groups SA01" \
         -i "pandas.core.resample.Resampler.indices SA01" \
         -i "pandas.core.resample.Resampler.max PR01,RT03,SA01" \
         -i "pandas.core.resample.Resampler.mean SA01" \
         -i "pandas.core.resample.Resampler.min PR01,RT03,SA01" \
-        -i "pandas.core.resample.Resampler.ohlc SA01" \
         -i "pandas.core.resample.Resampler.prod SA01" \
         -i "pandas.core.resample.Resampler.quantile PR01,PR07" \
         -i "pandas.core.resample.Resampler.sem SA01" \
         -i "pandas.core.resample.Resampler.std SA01" \
-        -i "pandas.core.resample.Resampler.sum SA01" \
         -i "pandas.core.resample.Resampler.transform PR01,RT03,SA01" \
         -i "pandas.core.resample.Resampler.var SA01" \
         -i "pandas.errors.AttributeConflictWarning SA01" \
-        -i "pandas.errors.CSSWarning SA01" \
-        -i "pandas.errors.CategoricalConversionWarning SA01" \
         -i "pandas.errors.ChainedAssignmentError SA01" \
-        -i "pandas.errors.ClosedFileError SA01" \
         -i "pandas.errors.DataError SA01" \
         -i "pandas.errors.DuplicateLabelError SA01" \
         -i "pandas.errors.IntCastingNaNError SA01" \
         -i "pandas.errors.InvalidIndexError SA01" \
-        -i "pandas.errors.InvalidVersion SA01" \
         -i "pandas.errors.NullFrequencyError SA01" \
         -i "pandas.errors.NumExprClobberingError SA01" \
         -i "pandas.errors.NumbaUtilError SA01" \
-        -i "pandas.errors.OptionError SA01" \
-        -i "pandas.errors.OutOfBoundsDatetime SA01" \
         -i "pandas.errors.OutOfBoundsTimedelta SA01" \
         -i "pandas.errors.PerformanceWarning SA01" \
         -i "pandas.errors.PossibleDataLossError SA01" \
-        -i "pandas.errors.PossiblePrecisionLoss SA01" \
-        -i "pandas.errors.SpecificationError SA01" \
         -i "pandas.errors.UndefinedVariableError PR01,SA01" \
         -i "pandas.errors.UnsortedIndexError SA01" \
-        -i "pandas.errors.UnsupportedFunctionCall SA01" \
         -i "pandas.errors.ValueLabelTypeMismatch SA01" \
         -i "pandas.infer_freq SA01" \
         -i "pandas.io.json.build_table_schema PR07,RT03,SA01" \
-        -i "pandas.io.stata.StataReader.data_label SA01" \
-        -i "pandas.io.stata.StataReader.value_labels RT03,SA01" \
-        -i "pandas.io.stata.StataReader.variable_labels RT03,SA01" \
         -i "pandas.io.stata.StataWriter.write_file SA01" \
-        -i "pandas.json_normalize RT03,SA01" \
-        -i "pandas.period_range RT03,SA01" \
         -i "pandas.plotting.andrews_curves RT03,SA01" \
-        -i "pandas.plotting.lag_plot RT03,SA01" \
         -i "pandas.plotting.scatter_matrix PR07,SA01" \
-        -i "pandas.set_eng_float_format RT03,SA01" \
-        -i "pandas.testing.assert_extension_array_equal SA01" \
         -i "pandas.tseries.offsets.BDay PR02,SA01" \
         -i "pandas.tseries.offsets.BQuarterBegin.is_on_offset GL08" \
         -i "pandas.tseries.offsets.BQuarterBegin.n GL08" \
@@ -348,7 +288,6 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.tseries.offsets.Second.is_on_offset GL08" \
         -i "pandas.tseries.offsets.Second.n GL08" \
         -i "pandas.tseries.offsets.Second.normalize GL08" \
-        -i "pandas.tseries.offsets.SemiMonthBegin SA01" \
         -i "pandas.tseries.offsets.SemiMonthBegin.day_of_month GL08" \
         -i "pandas.tseries.offsets.SemiMonthBegin.is_on_offset GL08" \
         -i "pandas.tseries.offsets.SemiMonthBegin.n GL08" \

ci/deps/actions-310.yaml

@@ -52,7 +52,7 @@ dependencies:
   - scipy>=1.10.0
   - sqlalchemy>=2.0.0
   - tabulate>=0.9.0
-  - xarray>=2022.12.0
+  - xarray>=2022.12.0, <=2024.9.0
   - xlrd>=2.0.1
   - xlsxwriter>=3.0.5
   - zstandard>=0.19.0

ci/deps/actions-311-downstream_compat.yaml

@@ -53,7 +53,7 @@ dependencies:
   - scipy>=1.10.0
   - sqlalchemy>=2.0.0
   - tabulate>=0.9.0
-  - xarray>=2022.12.0
+  - xarray>=2022.12.0, <=2024.9.0
   - xlrd>=2.0.1
   - xlsxwriter>=3.0.5
   - zstandard>=0.19.0