From 18948efab25be397f3bd08cd164173b822618808 Mon Sep 17 00:00:00 2001
From: rishu2403 <prakash@aganitha.ai>
Date: Thu, 26 Aug 2021 14:05:44 +0530
Subject: [PATCH] Added support for persisting IndexedReads index to disk

---
 pysam/libcalignmentfile.pyx | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/pysam/libcalignmentfile.pyx b/pysam/libcalignmentfile.pyx
index 6858985a..bcbb5f4e 100644
--- a/pysam/libcalignmentfile.pyx
+++ b/pysam/libcalignmentfile.pyx
@@ -75,7 +75,7 @@ from pysam.libcutils cimport force_bytes, force_str, charptr_to_str
 from pysam.libcutils cimport encode_filename, from_string_and_size
 from pysam.libcalignedsegment cimport makeAlignedSegment, makePileupColumn
 from pysam.libchtslib cimport HTSFile, hisremote
-
+import json
 if PY_MAJOR_VERSION >= 3:
     from io import StringIO
 else:
@@ -2918,6 +2918,14 @@ cdef class IndexedReads:
             self.htsfile = self.samfile.htsfile
             self.header = samfile.header
             self.owns_samfile = False
+    
+    def store(self, filename):
+        with open(filename, 'w') as f:
+            json.dump(self.index, f)
+    
+    def load(self, filename):
+        with open(filename) as f:
+            self.index = json.load(f)
 
     def build(self):
         '''build the index.'''