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1 parent c9a06dd commit 3bae7aeCopy full SHA for 3bae7ae
src/scanpy/preprocessing/_highly_variable_genes.py
@@ -597,7 +597,8 @@ def highly_variable_genes( # noqa: PLR0913
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the normalized dispersion is artificially set to 1. You'll be informed
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about this if you set `settings.verbosity = 4`.
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flavor
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- Choose the flavor for identifying highly variable genes (default depends on :attr:`~scanpy.Preset.highly_variable_genes`).
+ Choose the flavor for identifying highly variable genes
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+ (default depends on :attr:`scanpy.settings.preset` property :attr:`~scanpy.Preset.highly_variable_genes`).
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For the dispersion based methods in their default workflows,
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`'seurat'` passes the cutoffs whereas `'cell_ranger'` passes `n_top_genes`.
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subset
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