Merge pull request #341 from scverse/fix_zarr_v3_visium_reader

LucaMarconato · web-flow · commit 5ea8189988b1 · 2025-11-03T16:59:13.000+01:00
Fix table parameter visium reader
diff --git a/.gitignore b/.gitignore
@@ -36,5 +36,8 @@ node_modules/
 .code-workspace
 
 # test datasets (e.g. Xenium ones)
+# symlinks
+data
+# data folder
 data/
 tests/data
diff --git a/src/spatialdata_io/readers/visium.py b/src/spatialdata_io/readers/visium.py
@@ -253,7 +253,7 @@ def visium(
             rgb=None,
         )
 
-    return SpatialData(images=images, shapes=shapes, table=table)
+    return SpatialData(images=images, shapes=shapes, tables={"table": table})
 
 
 def _read_image(image_file: Path, imread_kwargs: dict[str, Any]) -> Any:

Original file line number	Diff line number	Diff line change
`@@ -253,7 +253,7 @@ def visium(`
`253`	`253`	`rgb=None,`
`254`	`254`	`)`
`255`	`255`
`256`		`- return SpatialData(images=images, shapes=shapes, table=table)`
	`256`	`+ return SpatialData(images=images, shapes=shapes, tables={"table": table})`
`257`	`257`
`258`	`258`
`259`	`259`	`def _read_image(image_file: Path, imread_kwargs: dict[str, Any]) -> Any:`