diff --git a/.gitmodules b/.gitmodules
index e69de29bb..393c69e52 100644
--- a/.gitmodules
+++ b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "mcp_docs/mcp_repo"]
+	path = mcp_docs/mcp_repo
+	url = https://github.com/seqeralabs/mcp.git
diff --git a/docusaurus.config.js b/docusaurus.config.js
index 65e67a41e..3173e1dde 100644
--- a/docusaurus.config.js
+++ b/docusaurus.config.js
@@ -148,6 +148,26 @@ export default async function createConfigAsync() {
     },
   ];
 
+  const docs_mcp = [
+    "@docusaurus/plugin-content-docs",
+    {
+      id: "mcp",
+      routeBasePath: "/mcp",
+      path: "mcp_docs/mcp_repo/docs",
+      remarkPlugins: [
+        (await import("remark-code-import")).default,
+        (await require("remark-math")).default,
+        (await import("docusaurus-remark-plugin-tab-blocks")).default,
+        (await require("remark-yaml-to-table")).default,
+      ],
+      rehypePlugins: [(await require("rehype-katex")).default],
+      editUrl: ({ docPath }) => {
+        return `https://github.com/seqeralabs/mcp/blob/master/docs/${docPath}`;
+      },
+      sidebarPath: "./mcp_docs/sidebar.json",
+    },
+  ];
+
   console.log(
     "\n  EXCLUDE_CHANGELOG: " + (process.env.EXCLUDE_CHANGELOG ? true : false),
     "\n  EXCLUDE_PLATFORM_ENTERPRISE: " +
@@ -161,6 +181,7 @@ export default async function createConfigAsync() {
     "\n  EXCLUDE_MULTIQC: " + (process.env.EXCLUDE_MULTIQC ? true : false),
     "\n  EXCLUDE_FUSION: " + (process.env.EXCLUDE_FUSION ? true : false),
     "\n  EXCLUDE_WAVE: " + (process.env.EXCLUDE_WAVE ? true : false),
+    "\n  EXCLUDE_MCP: " + (process.env.EXCLUDE_MCP ? true : false),
     "\n  INCLUDE_NEXT: " + (process.env.INCLUDE_NEXT ? true : false),
   );
 
@@ -265,6 +286,7 @@ export default async function createConfigAsync() {
       process.env.EXCLUDE_MULTIQC ? null : docs_multiqc,
       process.env.EXCLUDE_FUSION ? null : docs_fusion,
       process.env.EXCLUDE_WAVE ? null : docs_wave,
+      process.env.EXCLUDE_MCP ? null : docs_mcp,
 
       // Disable expensive bundler options.
       // https://github.com/facebook/docusaurus/pull/11176
@@ -367,6 +389,11 @@ export default async function createConfigAsync() {
             label: "Fusion",
             position: "left",
           },
+          {
+            to: "/mcp",
+            label: "MCP",
+            position: "left",
+          },
           {
             to: "https://training.nextflow.io/latest/",
             html: 'Nextflow Training <svg width="12" height="12" aria-hidden="true" viewBox="0 0 24 24" class="iconExternalLink_nPIU" style="margin-left:6px;opacity:0.6;"><path fill="currentColor" d="M21 13v10h-21v-19h12v2h-10v15h17v-8h2zm3-12h-10.988l4.035 4-6.977 7.07 2.828 2.828 6.977-7.07 4.125 4.172v-11z"></path></svg>',
diff --git a/mcp_docs/mcp_repo b/mcp_docs/mcp_repo
new file mode 160000
index 000000000..3b9f88fd7
--- /dev/null
+++ b/mcp_docs/mcp_repo
@@ -0,0 +1 @@
+Subproject commit 3b9f88fd7a976b1950d6879a9cbb185dc14003f9
diff --git a/mcp_docs/sidebar.json b/mcp_docs/sidebar.json
new file mode 100644
index 000000000..26d7ff64b
--- /dev/null
+++ b/mcp_docs/sidebar.json
@@ -0,0 +1,5 @@
+{
+  "sidebar": [
+    "index"
+  ]
+}