Skip to content

Commit 6663983

Browse files
committed
fix name variable and lint
1 parent 054274f commit 6663983

File tree

1 file changed

+2
-2
lines changed

1 file changed

+2
-2
lines changed

bolt/workflows/other/cancer_report.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -64,7 +64,7 @@ def entry(ctx, **kwargs):
6464

6565
# Optional dragen hrd argument
6666
if kwargs['dragen_hrd_fp']:
67-
hrdetect_line = f'--dragen_hrd {kwargs['dragen_hrd_fp']}'
67+
hrdetect_arg = f"--dragen_hrd {kwargs['dragen_hrd_fp']}"
6868

6969
# Run gpgr canrep
7070
command = fr'''
@@ -100,7 +100,7 @@ def entry(ctx, **kwargs):
100100
--img_dir {output_image_dir}/ \
101101
--result_outdir {output_table_dir}/ \
102102
--out_file {output_dir}/{kwargs["tumor_name"]}.cancer_report.html
103-
{hrdetect_line}\
103+
{hrdetect_arg}\
104104
'''
105105
util.execute_command(command)
106106

0 commit comments

Comments
 (0)