typo again ......

qclayssen · qclayssen · commit d34a7c28d35b · 2025-09-23T12:01:01.000+10:00
diff --git a/bolt/workflows/other/cancer_report.py b/bolt/workflows/other/cancer_report.py
@@ -96,11 +96,11 @@ def entry(ctx, **kwargs):
             \
             --key_genes {kwargs['cancer_genes_fp']} \
             --oncokb_genes {kwargs['oncokb_genes_fp']} \
+            {hrdetect_arg} \
             \
             --img_dir {output_image_dir}/ \
             --result_outdir {output_table_dir}/ \
-            --out_file {output_dir}/{kwargs["tumor_name"]}.cancer_report.html
-            {hrdetect_arg} \
+            --out_file {output_dir}/{kwargs['tumor_name']}.cancer_report.html
     '''
     util.execute_command(command)
 

Original file line number	Diff line number	Diff line change
`@@ -96,11 +96,11 @@ def entry(ctx, **kwargs):`
`96`	`96`	`\`
`97`	`97`	`--key_genes {kwargs['cancer_genes_fp']} \`
`98`	`98`	`--oncokb_genes {kwargs['oncokb_genes_fp']} \`
	`99`	`+ {hrdetect_arg} \`
`99`	`100`	`\`
`100`	`101`	`--img_dir {output_image_dir}/ \`
`101`	`102`	`--result_outdir {output_table_dir}/ \`
`102`		`- --out_file {output_dir}/{kwargs["tumor_name"]}.cancer_report.html`
`103`		`- {hrdetect_arg} \`
	`103`	`+ --out_file {output_dir}/{kwargs['tumor_name']}.cancer_report.html`
`104`	`104`	`'''`
`105`	`105`	`util.execute_command(command)`
`106`	`106`