change bolt version to test

Author: qclayssen

modules/local/bolt/other/multiqc_report/main.nf

@@ -2,7 +2,7 @@ process BOLT_OTHER_MULTIQC_REPORT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6-multiqc'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3-multiqc'
 
     input:
     tuple val(meta), path(input_files)

modules/local/bolt/other/purple_baf_plot/main.nf

@@ -2,7 +2,7 @@ process BOLT_OTHER_PURPLE_BAF_PLOT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6-circos'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3-circos'
 
     input:
     tuple val(meta), path(purple_dir)

modules/local/bolt/smlv_germline/prepare/main.nf

@@ -2,7 +2,7 @@ process BOLT_SMLV_GERMLINE_PREPARE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(smlv_vcf)

modules/local/bolt/smlv_germline/report/main.nf

@@ -2,7 +2,7 @@ process BOLT_SMLV_GERMLINE_REPORT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6-pcgr'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3-pcgr'
 
     input:
     tuple val(meta), path(smlv_vcf), path(smlv_unfiltered_vcf)

modules/local/bolt/smlv_somatic/annotate/main.nf

@@ -2,7 +2,7 @@ process BOLT_SMLV_SOMATIC_ANNOTATE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6-pcgr'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3-pcgr'
 
     input:
     tuple val(meta), path(smlv_vcf)

modules/local/bolt/smlv_somatic/filter/main.nf

@@ -2,7 +2,7 @@ process BOLT_SMLV_SOMATIC_FILTER {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(smlv_vcf)

modules/local/bolt/smlv_somatic/report/main.nf

@@ -2,7 +2,7 @@ process BOLT_SMLV_SOMATIC_REPORT {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6-pcgr'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3-pcgr'
 
     input:
     tuple val(meta), path(smlv_vcf), path(smlv_filters_vcf), path(smlv_dragen_vcf), path(purple_purity)

modules/local/bolt/smlv_somatic/rescue/main.nf

@@ -2,7 +2,7 @@ process BOLT_SMLV_SOMATIC_RESCUE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(smlv_vcf), path(smlv_tbi), path(sage_smlv_vcf), path(sage_smlv_tbi)

modules/local/bolt/sv_somatic/annotate/main.nf

@@ -2,7 +2,7 @@ process BOLT_SV_SOMATIC_ANNOTATE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6-snpeff'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3-snpeff'
 
     input:
     tuple val(meta), path(sv_vcf), path(cnv_tsv)

modules/local/bolt/sv_somatic/prioritise/main.nf

@@ -2,7 +2,7 @@ process BOLT_SV_SOMATIC_PRIORITISE {
     tag "${meta.id}"
     label 'process_low'
 
-    container 'ghcr.io/umccr/bolt:0.3.0-dev-6'
+    container 'ghcr.io/umccr/bolt:v0.3.0-pcgr-v2.2.5-3'
 
     input:
     tuple val(meta), path(sv_vcf)