use pie-documents

[ArneBinder]

Changes:

• use pie-documents
• remove annotations and documents, but re-export them from pie-documents
  • remove respective tests
• remove metrics and statistics (except TokenCountCollector), but re-export them from pie-documents
  • remove respective tests
  • remove pandas dependency (was just used in metrics)
• remove is_contained_in and has_overlap from utils.span, but re-export them from pie-documents
  • remove test file with tests that were commented out
• lower codecov project target from 70% to 68%

This requires pie-documents release v0.1.0.

We mark this as breaking, since documents and annotations are now from another package which may cause type mismatches.

IMPORTANT: This will be incompatible with pie-modules (this is enforced via may pytorch-ie version in latest pie-modules release).

[codecov]

Codecov Report

❌ Patch coverage is 96.42857% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 69.20%. Comparing base (7bc0040) to head (be37f64).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
...rch_ie/metrics/statistics/token_count_collector.py	94.73%	0 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #476      +/-   ##
==========================================
- Coverage   78.32%   69.20%   -9.13%     
==========================================
  Files          32       31       -1     
  Lines        2164     1750     -414     
  Branches      316      329      +13     
==========================================
- Hits         1695     1211     -484     
- Misses        378      472      +94     
+ Partials       91       67      -24     

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