v0.3

What's Changed

• hcs viewer for well plate datasets by @maragall in #41
• Tiff stack handling by @maragall in #42
• Batch processing by @maragall in #43

Full Changelog: v0.2.1...v0.2.2

v0.2.1

What's Changed

• Gpu setup by @maragall in #40

Full Changelog: v0.2...v0.3

v0.2

What's Changed

• option to stitch a selected z layer, stitch middle layer by default by @maragall in #28
• option to load flatfield .npy files by @maragall in #29
• feat: Add Maximum Intensity Projection (MIP) support by @maragall in #30
• add registration support by @maragall in #31
• GUI refactor by @maragall in #33
• Desktop shortcut by @maragall in #36
• Save flatfields by @maragall in #38

New Contributors

• @maragall made their first contribution in #28

Full Changelog: v0.1...v0.2

v0.1

What's Changed

• Initial python package and tools setup by @cjfuller in #1
• Import the image stitching parameters class by @cjfuller in #2
• Set up the computed stitching parameters by @cjfuller in #3
• Add dask_image, pandas, numpy dependencies by @cjfuller in #4
• Add the core stitcher logic + CLI by @cjfuller in #5
• Import the GUI code + hook it up to the revised stitcher by @cjfuller in #6
• Switch from print to logging by @cjfuller in #7
• Also convert the parameters file from print to logging by @cjfuller in #8
• Add a test for the stitcher by @cjfuller in #9
• Choose the chunk size for the output dask array based on available memory by @cjfuller in #10
• Add some timing utilities and a small speedup by @cjfuller in #11
• Use skimage for image reading direct to numpy arrays instead of dask by @cjfuller in #12
• Provide a name when calling da.from_array by @cjfuller in #13
• Add a couple more debug timing spans and suppress spammy third-party logs by @cjfuller in #14
• Use a zarr, disk-backed impl for large images by @cjfuller in #15
• Remove a bunch of unused code for non-implemented features by @cjfuller in #16
• Add setup and install scripts for the GUI by @cjfuller in #17
• Add an optional CLI parameter to choose the number of pyramid levels by @cjfuller in #18
• Add an option to turn on/off compression for the output by @cjfuller in #19
• Hook up the compression and pyramid settings to the GUI by @cjfuller in #20
• feat: add flatfield correction by @ianohara in #21
• fix: make sure to re-chunk pyramid levels and dask array top level by @ianohara in #22
• setup: source base env no matter what by @ianohara in #23
• flatfield: instead of loading all images, only load those used for flatfield by @ianohara in #24
• setup and run_gui: fix conda init and activation by @ianohara in #25

New Contributors

• @cjfuller made their first contribution in #1
• @ianohara made their first contribution in #21

Full Changelog: https://github.com/Cephla-Lab/image-stitcher/commits/v0.1