Remove hardcoded paths in RNA-seq Gen #199
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Add boundary column
Allow writing zFPKM graphs to a specific location
Write zFPKM Graphs
This moves all components of rnaseq.py into rnaseq_gen.py
Reduce complexity of building matrix results
This is functionally equivalent to the _read_counts_matrix function from rnaseq.py
This requires troppo and cobamp but does not yet set their version Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
This also sets the downstream sovler in cobamp Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Set Troppo Source
…ral-sh/ruff-action-2 chore(deps): bump astral-sh/ruff-action from 1 to 2
…ral-sh/setup-uv-4 chore(deps): bump astral-sh/setup-uv from 3 to 4
Signed-off-by: Josh Loecker <[email protected]>
hotfix: allow setting solvers through troppo; update actions
# Conflicts: # main/como/rnaseq.py
# Conflicts: # pyproject.toml
# Conflicts: # main/como/rnaseq_gen.py
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
Signed-off-by: Josh Loecker <[email protected]>
JoshLoecker
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…-gen Remove hardcoded paths in RNA-seq Gen
JoshLoecker
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Nov 3, 2025
…-gen Remove hardcoded paths in RNA-seq Gen
JoshLoecker
added a commit
that referenced
this pull request
Nov 3, 2025
…-gen Remove hardcoded paths in RNA-seq Gen
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