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This PR adds a comprehensive MINDS data access tutorial to the neuroshapes repository, solving Issues #374 and #147.

Files Added

  • notebooks/minds_data_access/minds_sparql_tutorial.ipynb
  • notebooks/minds_data_access/config.py
  • notebooks/minds_data_access/minds_queries.py
  • notebooks/minds_data_access/requirements.txt
  • notebooks/minds_data_access/README.md
  • notebooks/minds_data_access/test_tutorial.py

How to Run

  1. Activate the venv: venv\Scripts\activate
  2. Install dependencies: pip install -r notebooks\minds_data_access\requirements.txt
  3. Launch Jupyter: jupyter notebook
  4. Open notebooks/minds_data_access/minds_sparql_tutorial.ipynb
  5. Select the “Python 3.11.1 (neuroshapes)” kernel and run all cells.

Testing

Run python -m unittest discover notebooks/minds_data_access to ensure all tests pass.

Closes #374
Closes #147

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Request for SPARQL endpoint or API access to query MINDS data Build a python notebook showing how to query MINDS data

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