Usage

This is a workflow/pipeline aimed to streamline post-processing of noisy reads from Oxford Nanopore MinION Sequencing Data. The following software will need to be installed in a conda environment. A startup-script is provided in the GitHub repository. This is explained further on this page.

The following software will be used (not necessarily in this order, and this list may be incomplete):

• Guppy Basecalling
• Guppy Barcoding
• Cutadapt
• NanoFilt
• NanoQC
• NanoPlot
• MiniMap2
• isONclust
• spoa
• Plotly Graphs

Return to Wiki Homepage
Continue to Installation