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@dependabot dependabot bot commented on behalf of github Mar 2, 2023

Updates the requirements on snakemake to permit the latest version.

Release notes

Sourced from snakemake's releases.

v7.24.0

7.24.0 (2023-03-01)

Features

  • limit the number of input/output files in job properties (#2149) (d93f091)

Bug Fixes

  • #2130 by patching the protect() method so the path of files in subdirectories is properly resolved during write-protection (#2131) (1a754fd)
  • sre_constants import because of deprecation (#2139) (3b326db)
  • ensure user and group rw permissions for metadata files and source cache (#2132) (cc51faa)
  • is_run error with local, group jobs (#2133) (31bfcd5)
  • require toposort >= 1.10 (#2145) (3cb54b8)

Documentation

Changelog

Sourced from snakemake's changelog.

7.24.0 (2023-03-01)

Features

  • limit the number of input/output files in job properties (#2149) (d93f091)

Bug Fixes

  • #2130 by patching the protect() method so the path of files in subdirectories is properly resolved during write-protection (#2131) (1a754fd)
  • sre_constants import because of deprecation (#2139) (3b326db)
  • ensure user and group rw permissions for metadata files and source cache (#2132) (cc51faa)
  • is_run error with local, group jobs (#2133) (31bfcd5)
  • require toposort >= 1.10 (#2145) (3cb54b8)

Documentation

7.23.1 (2023-02-18)

Bug Fixes

7.23.0 (2023-02-18)

Features

  • changed report layout to display menu always left of the results. For fullscreen, one can still hide the menu, which leads to automatic growth of the results (#2116) (d771b1b)
  • Publish docker images for amd64 & arm64 (#2105) (4c898f5)

Bug Fixes

  • use text/markdown for long_description_content_type (#2112) (0241075)

Performance Improvements

  • Improve execution speed of cleanup_workdir (in dag) (#2103) (1fbc5f5)

7.22.0 (2023-02-12)

Features

... (truncated)

Commits
  • c892446 chore(main): release 7.24.0 (#2144)
  • f07d779 refactor: add missing linebreak in error handling (#2082)
  • 3b326db fix: sre_constants import because of deprecation (#2139)
  • d93f091 feat: limit the number of input/output files in job properties (#2149)
  • cc51faa fix: ensure user and group rw permissions for metadata files and source cache...
  • 3cb54b8 fix: require toposort >= 1.10 (#2145)
  • 1a754fd fix: #2130 by patching the protect() method so the path of files in subdirect...
  • 16954c7 docs: Update modularization.rst (#2137)
  • 31bfcd5 fix: is_run error with local, group jobs (#2133)
  • a110ae0 chore(main): release 7.23.1 (#2119)
  • Additional commits viewable in compare view

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Updates the requirements on [snakemake](https://github.com/snakemake/snakemake) to permit the latest version.
- [Release notes](https://github.com/snakemake/snakemake/releases)
- [Changelog](https://github.com/snakemake/snakemake/blob/main/CHANGELOG.md)
- [Commits](snakemake/snakemake@v7.8.0...v7.24.0)

---
updated-dependencies:
- dependency-name: snakemake
  dependency-type: direct:development
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Mar 2, 2023
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