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ModelSEED

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  1. ModelSEEDDatabase ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    HTML 64 41

  2. ModelSEEDpy ModelSEEDpy Public

    Python package for building and analyzing models using ModelSEED

    Python 24 20

  3. Model-SEED-core Model-SEED-core Public archive

    The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.

    Perl 21 9

  4. ModelSEED-UI ModelSEED-UI Public

    ModelSEED UI (beta)

    HTML 9 7

  5. PlantSEED PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    Perl 6 9

  6. ModelSeedApi ModelSeedApi Public

    Application Programming Interface to the Model Seed

    Perl 4 1

Repositories

Showing 10 of 52 repositories
  • anme-thermodynamic-modeling Public

    ANME-SRB thermodynamic metabolic flux analysis notebooks

    ModelSEED/anme-thermodynamic-modeling’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 2, 2026
  • ADP1Notebooks Public
    ModelSEED/ADP1Notebooks’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 29, 2025
  • MicrobiomeNotebooks Public
    ModelSEED/MicrobiomeNotebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 23, 2025
  • ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    ModelSEED/ModelSEEDDatabase’s past year of commit activity
    HTML 64 41 22 2 Updated Dec 12, 2025
  • ModelSEEDTemplates Public
    ModelSEED/ModelSEEDTemplates’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Dec 12, 2025
  • AISynbioPipeline Public

    Autonomous lab system for adaptive lab evolution of ADP1 with LIMS Google Sheets synchronization

    ModelSEED/AISynbioPipeline’s past year of commit activity
    Python 0 1 0 0 Updated Dec 12, 2025
  • KB-ModelSEEDReconstruction Public
    ModelSEED/KB-ModelSEEDReconstruction’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Dec 11, 2025
  • PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    ModelSEED/PlantSEED’s past year of commit activity
    Perl 6 9 13 0 Updated Dec 6, 2025
  • ModelSEED-UI Public

    ModelSEED UI (beta)

    ModelSEED/ModelSEED-UI’s past year of commit activity
    HTML 9 MIT 7 27 5 Updated Dec 5, 2025
  • GenomeImporter Public

    Module for importing a genome into KBase from SEED, PATRIC, or RAST

    ModelSEED/GenomeImporter’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Dec 4, 2025
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