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feat: predict spectrum from mol using NMRShiftDB #79

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Merged
vcnainala merged 1 commit into from
Jun 13, 2025
Merged

feat: predict spectrum from mol using NMRShiftDB #79

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5 changes: 4 additions & 1 deletion app/scripts/nmr-cli/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -3,13 +3,15 @@

FROM mcr.microsoft.com/playwright:v1.51.1-jammy


SHELL ["/bin/bash", "-o", "pipefail", "-c"]


WORKDIR /app

#ENV BASE_NMRIUM_URL=https://nmrium.nmrxiv.org/
ENV BASE_NMRIUM_URL=https://nmriumdev.nmrxiv.org/

ENV NMR_PREDICTION_URL=https://nmrshiftdb.nmr.uni-koeln.de/NmrshiftdbServlet/nmrshiftdbaction/quickcheck

COPY package.json ./
COPY package-lock.json ./
Expand All @@ -22,6 +24,7 @@ RUN npm run build

#install the nmr-cli as a global package
# for example, nmr-cli parse-spectra -u https://cheminfo.github.io/bruker-data-test/data/zipped/aspirin-1h.zip
# nmr-cli predict -n "1H" --id 1 --type "nmr;1H;1d" --shifts "1" --solvent "Dimethylsulphoxide-D6 (DMSO-D6, C2D6SO)" -m $"\n Ketcher 6122516162D 1 1.00000 0.00000 0\n\n 16 17 0 0 0 0 0 0 0 0999 V2000\n 1.1954 -4.6484 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 2.9258 -4.6479 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 2.0622 -4.1483 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 2.9258 -5.6488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 1.1954 -5.6533 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 2.0644 -6.1483 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 3.7902 -4.1495 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0\n 4.6574 -4.6498 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 3.7964 -6.1512 0.0000 N 0 0 0 0 0 0 0 0 0 0 0 0\n 4.6596 -5.6458 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 5.5228 -4.1488 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 5.5277 -6.1421 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\n 6.3895 -4.6477 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\n 5.5216 -3.1488 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\n 7.2548 -4.1466 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 8.1215 -4.6455 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 3 1 2 0 0 0 0\n 1 5 1 0 0 0 0\n 5 6 2 0 0 0 0\n 6 4 1 0 0 0 0\n 4 2 1 0 0 0 0\n 2 3 1 0 0 0 0\n 4 9 1 0 0 0 0\n 9 10 2 0 0 0 0\n 10 8 1 0 0 0 0\n 8 7 2 0 0 0 0\n 7 2 1 0 0 0 0\n 8 11 1 0 0 0 0\n 10 12 1 0 0 0 0\n 11 13 1 0 0 0 0\n 11 14 2 0 0 0 0\n 13 15 1 0 0 0 0\n 15 16 1 0 0 0 0\nM END"
RUN npm install . -g


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257 changes: 257 additions & 0 deletions app/scripts/nmr-cli/package-lock.json
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