Major changes:
- Introduces an exome bam pipeline: allows running STRetch directly from exomes in bam format
Minor changes/bugfixes
- Add unit tests and coverage reports
- Add tests for
identify_locus.pyand its dependencies, and refactor these to aid testing - Round off floating point numbers in result
STR.tsvfiles identify_locus.pysorts bed inputs by default- Fix some paths
pipeline_config_template.groovy