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PreibischLab

Preibisch Lab

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  1. RS-FISH RS-FISH Public

    Tool for precise, interactive, fast and scalable FISH spot detection

    Java 50 14

  2. STIM STIM Public

    Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

    Java 29 1

  3. multiview-simulation multiview-simulation Public

    Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

    Java 12 5

  4. dl-cell-counting dl-cell-counting Public

    Repo contains the implementation of the count-ception CNN (Tensorflow + Keras)

    Jupyter Notebook 11 4

  5. RS-FISH-Spark RS-FISH-Spark Public

    Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud

    Java 8 1

  6. FRC-QE FRC-QE Public

    Fourier Ring Correlation-based estimation of clearing quality

    HTML 4 2

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