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@sayatmimar sayatmimar commented Nov 28, 2023

This PR adds the slurm sctipt to run multi compartment segmentation training in HPG. Along with this script, please create the following folders in segmentationschool directory:

TRAINING_data
output
pretrained_model

In addition, also create slurm_log.out file (touch slurm_log.out).

Finally, please update user and CODESDIR path.

Singularity container (.sif) is located in /orange/pinaki.sarder/shared_singularity_files.

To pull this branch on your local, run the following on your main branch (git checkout main):

git fetch origin
git branch -f hpg_training origin/hpg_training
git checkout hpg_training

@sayatmimar sayatmimar changed the title adding hpg tra training code adding hpg training code (DO NOT MERGE) Nov 28, 2023
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