SarderLab · AnishTatke · Nov 28, 2023 · Nov 28, 2023 · Mar 14, 2025 · Mar 18, 2025
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,15 @@
+multic/segmentationschool/*.sh
+
+multic/segmentationschool/logs/
+multic/segmentationschool/output/
+multic/segmentationschool/test.py
+multic/segmentationschool/profile.html
+multic/segmentationschool/profile.json
+
+multic/segmentationschool/*.ipynb
+
+multic/segmentationschool/Codes/__pycache__/
+multic/segmentationschool/utils/__pycache__/
+multic/segmentationschool/__pycache__/
+
+
diff --git a/Dockerfile b/Dockerfile
@@ -128,12 +128,11 @@ RUN pip install --no-cache-dir --upgrade --ignore-installed pip setuptools && \
 RUN python --version && pip --version && pip freeze
 
 WORKDIR $mc_path/multic/cli
+LABEL entry_path=$mc_path/multic/cli
 
 # Test our entrypoint.  If we have incompatible versions of numpy and
 # openslide, one of these will fail
 RUN python -m slicer_cli_web.cli_list_entrypoint --list_cli
-RUN python -m slicer_cli_web.cli_list_entrypoint MultiCompartmentSegment --help
-RUN python -m slicer_cli_web.cli_list_entrypoint FeatureExtraction --help
-
+RUN python -m slicer_cli_web.cli_list_entrypoint MultiCompartmentTrain --help
 
 ENTRYPOINT ["/bin/bash", "docker-entrypoint.sh"]
diff --git a/multic/cli/FeatureExtraction/FeatureExtraction.py b/multic/cli/FeatureExtraction/FeatureExtraction.py
diff --git a/multic/cli/FeatureExtraction/FeatureExtraction.xml b/multic/cli/FeatureExtraction/FeatureExtraction.xml
diff --git a/multic/cli/MultiCompartmentSegment/MultiCompartmentSegment.py b/multic/cli/MultiCompartmentSegment/MultiCompartmentSegment.py
diff --git a/multic/cli/MultiCompartmentSegment/MultiCompartmentSegment.xml b/multic/cli/MultiCompartmentSegment/MultiCompartmentSegment.xml