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@VIBTOBIlab

VIBTOBIlab

Translational Oncogenomics and Bio-informatics (TOBI), headed by Prof. Dr. Ir. Katleen De Preter.

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  1. BismarkPipeline BismarkPipeline Public

    Methylation (Bisulfite-Sequencing) analysis pipeline of cfRRBS samples using Bismark

    HTML 1

  2. MethylSeq MethylSeq Public

    Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

    Nextflow 1

Repositories

Showing 10 of 12 repositories
  • MethylSeq Public

    Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

    VIBTOBIlab/MethylSeq’s past year of commit activity
    Nextflow 1 MIT 0 0 0 Updated Jan 13, 2026
  • VIBTOBIlab.github.io Public
    VIBTOBIlab/VIBTOBIlab.github.io’s past year of commit activity
    SCSS 0 1 0 0 Updated Jan 9, 2026
  • methurator Public

    methurator is a Python package designed to estimate sequencing saturation for reduced-representation bisulfite sequencing (RRBS) data.

    VIBTOBIlab/methurator’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jan 5, 2026
  • Shiny-DNAmBenchmarking Public

    Shiny Application for DNAmBenchmarking paper doi: 10.1101/2025.11.27.688590

    VIBTOBIlab/Shiny-DNAmBenchmarking’s past year of commit activity
    R 0 MIT 1 0 0 Updated Dec 2, 2025
  • DecoNFlow Public

    DecoNFlow is a bioinformatics analysis pipeline used for computational deconvolution of DNA methylation data. It allows deconvolution of samples using both reference-based and reference-free deconvolution tools.

    VIBTOBIlab/DecoNFlow’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Dec 1, 2025
  • BenchmarkingAnalysis Public

    Repository containing scripts and tutorials to reproduce the benchmarking results.

    VIBTOBIlab/BenchmarkingAnalysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 20, 2025
  • deconflow_testdata Public

    Repository containing toy data to test DecoNFlow pipeline

    VIBTOBIlab/deconflow_testdata’s past year of commit activity
    0 0 0 0 Updated Oct 20, 2025
  • Sillymix Public

    Sillymix is a bioinformatics analysis pipeline used to perform in-silico mixtures of tumoral and healthy fastq files at specified sequencing depth (in number of reads) and tumoral fractions.

    VIBTOBIlab/Sillymix’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 8, 2025
  • BismarkPipeline Public

    Methylation (Bisulfite-Sequencing) analysis pipeline of cfRRBS samples using Bismark

    VIBTOBIlab/BismarkPipeline’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 4, 2025
  • NBAtlas_manuscript Public
    VIBTOBIlab/NBAtlas_manuscript’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 10, 2024
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