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Unclear which snippy output file to provide to <code>PATHOGIST distance</code>

Status: Open.

#35 In WGS-TB/PathOGiST;

· sean-la opened on Oct 4, 2019

Current conda package has too many dependencies

Status: Open.

#34 In WGS-TB/PathOGiST;

· sean-la opened on Sep 4, 2019

MentaLiST installation in conda package has <code>LoadError</code>

Status: Open.

#33 In WGS-TB/PathOGiST;

· sean-la opened on Aug 13, 2019

Parallelize correlation clustering

enhancementNew feature or requestNew feature or request

Status: Open.

#23 In WGS-TB/PathOGiST;

· sean-la opened on Feb 20, 2019

Make <code>visualize</code> subcommand compatible with jupyter notebook

enhancementNew feature or requestNew feature or request

Status: Open.

#10 In WGS-TB/PathOGiST;

· sean-la opened on Jan 7, 2019

Refactor <code>consensus</code> subcommand to take a YAML configuration file as input, similar to subcommand <code>all</code>.

enhancementNew feature or requestNew feature or request

Status: Open.

#9 In WGS-TB/PathOGiST;

· sean-la opened on Dec 28, 2018

Consensus clustering output should have the same column name as Correlation clustering

Status: Open.

#5 In WGS-TB/PathOGiST;

· pedrofeijao opened on Nov 30, 2018

Galaxy interprets logger output to stderr as an actual error

bugSomething isn't workingSomething isn't working

Status: Open.

#1 In WGS-TB/PathOGiST;

· matnguyen opened on Nov 16, 2018