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@huanlity huanlity commented Aug 6, 2025

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* Add IST preprocessing support

* adding print statements
* Use simple image layer for H&E

* Generate IST cell metadata before gene parquet step

* Fix custom meta cell loading

* Fix gene parquet saving

* Avoid in-place replace on sparse data

* fix sparse to_parquet

* fix gene parquet saving

* fix parquet gene filtering with duplicate names

* Fix gene parquet export with duplicate columns

* addressing duplicate gene names before making cbg files
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2 participants