Bash assignment !!!!

LinuxProblems/Problem1.sh

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+less 9606.tsv.gz | grep Domain | cut -d ' ' -f 4 | wc -l

LinuxProblems/Problem2/ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/Yersinia_pestis_A1122_uid158119/NC_017170.faa

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+>gi|384136997|ref|YP_005523947.1| pesticin immunity protein [Yersinia pestis A1122]
+MISKLFCLALIFLSSSGLAEKNTYTAKDILQNLELNTFGNSLSHGIYGKQTTFKQTEFTNIKSNTKKHIA
+LINKDNSWMISLKILGIKRDEYTVCFEDFSLIRPPTYVAIHPLLIKKVKSGNFIVVKEIKKSIPGCTVYY
+H
+>gi|384136998|ref|YP_005523948.1| pesticin [Yersinia pestis A1122]
+MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSE
+YSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRI
+VLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQ
+RSKQDLLNDGVPQYIADRLDGYYMLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANI
+GLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKREGALVQKD
+IDSGLLK
+>gi|384136999|ref|YP_005523949.1| hypothetical protein [Yersinia pestis A1122]
+MKFHFCDLNHSYKNQEGKIRSRKTAPGNIRKKQKGDNVSKTKSGRHRLSKTDKRLLAALVVAGYEERTAR
+DLIQKHVYTLTQADLRHLVSEISNGVGQSQAYDAIYQARRIRLARKYLSGKKPEGVEPREGQEREDLP
+>gi|384137000|ref|YP_005523950.1| outer membrane protease [Yersinia pestis A1122]
+MKKSSIVATIITILSGSANAASSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNV
+AILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWL
+LQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFEL
+NALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTI
+DKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF
+>gi|384137001|ref|YP_005523951.1| XRE family transcriptional regulator [Yersinia pestis A1122]
+MRTLDEVIASRSPESQTRIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLA
+TLKRYVEAMGGKLSLDVELPTGRRVAFHV
+>gi|384137002|ref|YP_005523952.1| hypothetical protein [Yersinia pestis A1122]
+MWMVLFSQRFDDWLNEQEDALQEKVLADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAF
+YAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFTAHLNTLESK
+>gi|384137003|ref|YP_005523953.1| hypothetical protein [Yersinia pestis A1122]
+MNGKTEFMPDERDLAIKAKHSNKDTPESRPDMF
+>gi|384137004|ref|YP_005523954.1| hypothetical protein [Yersinia pestis A1122]
+MWITIAPFVTQGSGYAFPHASILSGIAMSHFYFLVLHAVKQGFIFGDAKVRTRHINHRFSPYHTPSQNTS
+CEGLFYVVAKKKPLCLKEGLYVSKKIPGVIHLRKFQTNHKMEHRQCPEVKECSD
+>gi|384137005|ref|YP_005523955.1| transposase for insertion sequence [Yersinia pestis A1122]
+MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIAD
+AHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHV
+FVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQ
+FGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRK
+HETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
+>gi|384137006|ref|YP_005523956.1| transposase/IS protein [Yersinia pestis A1122]
+MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFP
+AVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAA
+DLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQ
+WDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE

LinuxProblems/Problem2/ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/Yersinia_pestis_Antiqua_uid58607/NC_008121.faa

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+>gi|108793633|ref|YP_636782.1| transposase [Yersinia pestis Antiqua]
+MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIAD
+AHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHV
+FVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQ
+FGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRK
+HETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
+>gi|108793634|ref|YP_636783.1| transposase/IS protein [Yersinia pestis Antiqua]
+MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPA
+VKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAAD
+LLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQW
+DQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
+>gi|108793640|ref|YP_636784.1| replication regulatory protein [Yersinia pestis Antiqua]
+MNKQQQTALNMARFIRSQSLILLEKLDALDADEQAAMCERLHELAEELQNSIQARFEAESETGT
+>gi|108793641|ref|YP_636785.1| replication regulatory protein [Yersinia pestis Antiqua]
+MNKQQQTALNMARFIRSQSLILLEKLDALDADEQAAMCERLHELAEELQNSIQARFEAESETGT
+>gi|108793635|ref|YP_636786.1| pesticin [Yersinia pestis Antiqua]
+MSDTMVVNGSGGVPAFLFSGSTLSSYRPNFEANSITIALPHYVDLPGRSNFKLMYIMGFPIDTEMEKDSE
+YSNKIRQESKISKTEGTVSYEQKITVETGQEKDGVKVYRVMVLEGTIAESIEHLDKKENEDILNNNRNRI
+VLADNTVINFDNISQLKEFLRRSVNIVDHDIFSSNGFEGFNPTSHFPSNPSSDYFNSTGVTFGSGVDLGQ
+RSKQDLLNDGVPQYIADRLDGYYMLRGKEAYDKVRTAPLTLSDNEAHLLSNIYIDKFSHKIEGLFNDANI
+GLRFSDLPLRTRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNIVDGMSDRRKREGALVQKD
+IDSGLLK
+>gi|108793636|ref|YP_636787.1| hypothetical protein YPA_PCP0004 [Yersinia pestis Antiqua]
+MSKTKSGRHRLSKTDKRLLAALVVAGYEERTARDLIQKHVYTLTQADLRHLVSEISNGVGQSQAYDAIYQ
+ARRIRLARKYLSGKKPEGVEPREGQEREDLP
+>gi|108793637|ref|YP_636788.1| outer membrane protease [Yersinia pestis Antiqua]
+MKKSSIVATIITILSGSANAASSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNV
+AILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWL
+LQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFEL
+NALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTI
+DKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF
+>gi|108793638|ref|YP_636789.1| transcriptional regulator [Yersinia pestis Antiqua]
+MRTLDEVIASRSPESQTRIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLA
+TLKRYVEAMGGKLSLDVELPTGRRVAFHV
+>gi|108793639|ref|YP_636790.1| hypothetical protein YPA_PCP0007 [Yersinia pestis Antiqua]
+MWMVLFSQRFDDWLNEQEDALQEKVLADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAF
+YAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFTAHLNTLESK